-
2
-
-
79960399031
-
A brief history of the antibiotic era: Lessons learned and challenges for the future
-
[CrossRef] [PubMed]
-
Aminov, R.I. A brief history of the antibiotic era: Lessons learned and challenges for the future. Front. Microbiol. 2010, 1. [CrossRef] [PubMed]
-
(2010)
Front. Microbiol
, pp. 1
-
-
Aminov, R.I.1
-
3
-
-
84866883020
-
Antibiotics produced by Streptomyces
-
[CrossRef] [PubMed]
-
De Lima Procópio, R.E.; da Silva, I.R.; Martins, M.K.; de Azevedo, J.L.; de Araújo, J.M. Antibiotics produced by Streptomyces. Braz. J. Infect. Dis. 2012, 16, 466–471. [CrossRef] [PubMed]
-
(2012)
Braz. J. Infect. Dis
, vol.16
, pp. 466-471
-
-
De Lima Procópio, R.E.1
Da Silva, I.R.2
Martins, M.K.3
De Azevedo, J.L.4
De Araújo, J.M.5
-
4
-
-
67650436176
-
Drug discovery and natural products: End of an era or an endless frontier?
-
[CrossRef] [PubMed]
-
Li, J.W.-H.; Vederas, J.C. Drug discovery and natural products: End of an era or an endless frontier? Science 2009, 325, 161–165. [CrossRef] [PubMed]
-
(2009)
Science
, vol.325
, pp. 161-165
-
-
Li, J.W.1
Vederas, J.C.2
-
5
-
-
34547613493
-
The future of natural products as a source of new antibiotics
-
[PubMed]
-
Luzhetskyy, A.; Pelzer, S.; Bechthold, A. The future of natural products as a source of new antibiotics. Curr. Opin. Investig. Drugs 2007, 8, 608–613. [PubMed]
-
(2007)
Curr. Opin. Investig. Drugs
, vol.8
, pp. 608-613
-
-
Luzhetskyy, A.1
Pelzer, S.2
Bechthold, A.3
-
6
-
-
77957674643
-
Isolation and partial purification of an antimicrobial agent from halotolerant alkaliphilic Streptomyces aburaviensis strain Kut-8
-
[CrossRef]
-
Thumar, J.T.; Dhulia, K.; Singh, S.P. Isolation and partial purification of an antimicrobial agent from halotolerant alkaliphilic Streptomyces aburaviensis strain Kut-8. World J. Microbiol. Biotechnol. 2010, 26, 2081–2087. [CrossRef]
-
(2010)
World J. Microbiol. Biotechnol
, vol.26
, pp. 2081-2087
-
-
Thumar, J.T.1
Dhulia, K.2
Singh, S.P.3
-
7
-
-
79953100640
-
Screening the Egyptian desert actinomycetes as candidates for new antimicrobial compounds and identification of a new desert Streptomyces strain
-
Hozzein, W.N.; Rabie, W.; Ali, M.I.A. Screening the Egyptian desert actinomycetes as candidates for new antimicrobial compounds and identification of a new desert Streptomyces strain. Afr. J. Biotechnol. 2011, 10, 2295–2301.
-
(2011)
Afr. J. Biotechnol
, vol.10
, pp. 2295-2301
-
-
Hozzein, W.N.1
Rabie, W.2
Ali, M.I.A.3
-
8
-
-
84892380693
-
-
Elsevier: New York, NY, USA, Chapter 14
-
Tiwari, K.; Gupta, R.K. Studies in Natural Products Chemistry. Bioactive Metabolites from Rare Actinomycetes; Elsevier: New York, NY, USA, 2014; Chapter 14.
-
(2014)
Studies in Natural Products Chemistry. Bioactive Metabolites from Rare Actinomycetes
-
-
Tiwari, K.1
Gupta, R.K.2
-
9
-
-
4544291065
-
Abyssomicin C—A polycyclic antibiotic from a marine Verrucosispora strain as an inhibitor of the p-aminobenzoic acid/tetrahydrofolate biosynthesis pathway
-
[CrossRef] [PubMed]
-
Bister, B.; Bischoff, D.; Strobele, M.; Riedlinger, J.; Reicke, A.; Wolter, F.; Bull, A.T.; Zahner, H.; Fiedler, H.P.; Sussmuth, R.D. Abyssomicin C—A polycyclic antibiotic from a marine Verrucosispora strain as an inhibitor of the p-aminobenzoic acid/tetrahydrofolate biosynthesis pathway. Angew. Chem. Int. Ed. Engl. 2004, 43, 2574–2576. [CrossRef] [PubMed]
-
(2004)
Angew. Chem. Int. Ed. Engl
, vol.43
, pp. 2574-2576
-
-
Bister, B.1
Bischoff, D.2
Strobele, M.3
Riedlinger, J.4
Reicke, A.5
Wolter, F.6
Bull, A.T.7
Zahner, H.8
Fiedler, H.P.9
Sussmuth, R.D.10
-
10
-
-
54049104413
-
Proximicin A, B and C, novel aminofuran antibiotic and anticancer compounds isolated from marine strains of the actinomycete Verrucosispora
-
[CrossRef] [PubMed]
-
Fiedler, H.-P.; Bruntner, C.; Riedlinger, J.; Bull, A.T.; Knutsen, G.; Goodfellow, M.; Jones, A.; Maldonado, L.; Pathom-Aree, W.; Beil, W.; et al. Proximicin A, B and C, novel aminofuran antibiotic and anticancer compounds isolated from marine strains of the actinomycete Verrucosispora. J. Antibiot. 2008, 61, 158–163. [CrossRef] [PubMed]
-
(2008)
J. Antibiot
, vol.61
, pp. 158-163
-
-
Fiedler, H.-P.1
Bruntner, C.2
Riedlinger, J.3
Bull, A.T.4
Knutsen, G.5
Goodfellow, M.6
Jones, A.7
Maldonado, L.8
Pathom-Aree, W.9
Beil, W.10
-
11
-
-
79955716262
-
Current approaches to exploit actinomycetes as a source of novel natural products
-
[CrossRef] [PubMed]
-
Genilloud, O.; Gonzalez, I.; Salazar, O.; Martin, J.; Tormo, J.R.; Vicente, F. Current approaches to exploit actinomycetes as a source of novel natural products. J. Ind. Microbiol. Biotechnol. 2011, 38, 375–389. [CrossRef] [PubMed]
-
(2011)
J. Ind. Microbiol. Biotechnol
, vol.38
, pp. 375-389
-
-
Genilloud, O.1
Gonzalez, I.2
Salazar, O.3
Martin, J.4
Tormo, J.R.5
Vicente, F.6
-
12
-
-
84886880392
-
Culturable rare Actinomycetes: Diversity, isolation and marine natural product discovery
-
[CrossRef] [PubMed]
-
Subramani, R.; Aalbersberg, W. Culturable rare Actinomycetes: Diversity, isolation and marine natural product discovery. Appl. Microbiol. Biotechnol. 2013, 97, 9291–9321. [CrossRef] [PubMed]
-
(2013)
Appl. Microbiol. Biotechnol
, vol.97
, pp. 9291-9321
-
-
Subramani, R.1
Aalbersberg, W.2
-
13
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
[CrossRef] [PubMed]
-
Bentley, S.D.; Chater, K.F.; Cerdeño-Tárraga, A.-M.; Challis, G.L.; Thomson, N.R.; James, K.D.; Harris, D.E.; Quail, M.A.; Kieser, H.; Harper, D.; et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 2002, 417, 141–147. [CrossRef] [PubMed]
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeño-Tárraga, A.-M.3
Challis, G.L.4
Thomson, N.R.5
James, K.D.6
Harris, D.E.7
Quail, M.A.8
Kieser, H.9
Harper, D.10
-
14
-
-
77954353448
-
Strategies for culture of “unculturable” bacteria
-
[CrossRef] [PubMed]
-
Vartoukian, S.R.; Palmer, R.M.; Wade, W.G. Strategies for culture of “unculturable” bacteria. FEMS Microbiol. Lett. 2010, 309, 1–7. [CrossRef] [PubMed]
-
(2010)
FEMS Microbiol. Lett
, vol.309
, pp. 1-7
-
-
Vartoukian, S.R.1
Palmer, R.M.2
Wade, W.G.3
-
15
-
-
85042535305
-
Correlating chemical diversity with taxonomic distance for discovery of natural products in myxobacteria
-
[CrossRef] [PubMed]
-
Hoffmann, T.; Krug, D.; Bozkurt, N.; Duddela, S.; Jansen, R.; Garcia, R.; Gerth, K.; Steinmetz, H.; Müller, R. Correlating chemical diversity with taxonomic distance for discovery of natural products in myxobacteria. Nat. Commun. 2018, 9. [CrossRef] [PubMed]
-
(2018)
Nat. Commun
, pp. 9
-
-
Hoffmann, T.1
Krug, D.2
Bozkurt, N.3
Duddela, S.4
Jansen, R.5
Garcia, R.6
Gerth, K.7
Steinmetz, H.8
Müller, R.9
-
16
-
-
84900859146
-
Secondary metabolomics: The impact of mass spectrometry-based approaches on the discovery and characterization of microbial natural products
-
[CrossRef] [PubMed]
-
Krug, D.; Müller, R. Secondary metabolomics: The impact of mass spectrometry-based approaches on the discovery and characterization of microbial natural products. Nat. Prod. Rep. 2014, 31, 768–783. [CrossRef] [PubMed]
-
(2014)
Nat. Prod. Rep
, vol.31
, pp. 768-783
-
-
Krug, D.1
Müller, R.2
-
17
-
-
70350223819
-
The impact of genomics on the exploitation of the myxobacterial secondary metabolome
-
[CrossRef] [PubMed]
-
Wenzel, S.C.; Müller, R. The impact of genomics on the exploitation of the myxobacterial secondary metabolome. Nat. Prod. Rep. 2009, 26, 1385–1407. [CrossRef] [PubMed]
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 1385-1407
-
-
Wenzel, S.C.1
Müller, R.2
-
18
-
-
27544456830
-
The impact of bacterial genomics on natural product research
-
[CrossRef] [PubMed]
-
Bode, H.B.; Müller, R. The impact of bacterial genomics on natural product research. Angew. Chem. Int. Ed. Engl. 2005, 44, 6828–6846. [CrossRef] [PubMed]
-
(2005)
Angew. Chem. Int. Ed. Engl
, vol.44
, pp. 6828-6846
-
-
Bode, H.B.1
Müller, R.2
-
19
-
-
84945249205
-
Bioactive natural products from novel microbial sources
-
[CrossRef] [PubMed]
-
Challinor, V.L.; Bode, H.B. Bioactive natural products from novel microbial sources. Ann. N. Y. Acad. Sci. 2015, 1354, 82–97. [CrossRef] [PubMed]
-
(2015)
Ann. N. Y. Acad. Sci
, vol.1354
, pp. 82-97
-
-
Challinor, V.L.1
Bode, H.B.2
-
20
-
-
33744537287
-
Discovery of novel metabolites from marine actinomycetes
-
[CrossRef] [PubMed]
-
Lam, K.S. Discovery of novel metabolites from marine actinomycetes. Curr. Opin. Microbiol. 2006, 9, 245–251. [CrossRef] [PubMed]
-
(2006)
Curr. Opin. Microbiol
, vol.9
, pp. 245-251
-
-
Lam, K.S.1
-
21
-
-
85008145315
-
Sources of antibiotics: Hot springs
-
[CrossRef] [PubMed]
-
Mahajan, G.B.; Balachandran, L. Sources of antibiotics: Hot springs. Biochem. Pharmacol. 2017, 134, 35–41. [CrossRef] [PubMed]
-
(2017)
Biochem. Pharmacol
, vol.134
, pp. 35-41
-
-
Mahajan, G.B.1
Balachandran, L.2
-
22
-
-
84930940562
-
Isolation, abundance and phylogenetic affiliation of endophytic actinomycetes associated with medicinal plants and screening for their in vitro antimicrobial biosynthetic potential
-
[CrossRef] [PubMed]
-
Passari, A.K.; Mishra, V.K.; Saikia, R.; Gupta, V.K.; Singh, B.P. Isolation, abundance and phylogenetic affiliation of endophytic actinomycetes associated with medicinal plants and screening for their in vitro antimicrobial biosynthetic potential. Front. Microbiol. 2015, 6. [CrossRef] [PubMed]
-
(2015)
Front. Microbiol
, pp. 6
-
-
Passari, A.K.1
Mishra, V.K.2
Saikia, R.3
Gupta, V.K.4
Singh, B.P.5
-
23
-
-
85041354071
-
Marine natural products
-
[CrossRef] [PubMed]
-
Blunt, J.W.; Carroll, A.R.; Copp, B.R.; Davis, R.A.; Keyzers, R.A.; Prinsep, M.R. Marine natural products. Nat. Prod. Rep. 2018, 35, 8–53. [CrossRef] [PubMed]
-
(2018)
Nat. Prod. Rep
, vol.35
, pp. 8-53
-
-
Blunt, J.W.1
Carroll, A.R.2
Copp, B.R.3
Davis, R.A.4
Keyzers, R.A.5
Prinsep, M.R.6
-
24
-
-
84880534043
-
Diversity and isolation of rare actinomycetes: An overview. Crit
-
[CrossRef] [PubMed]
-
Tiwari, K.; Gupta, R.K. Diversity and isolation of rare actinomycetes: An overview. Crit. Rev. Microbiol. 2013, 39, 256–294. [CrossRef] [PubMed]
-
(2013)
Rev. Microbiol
, vol.39
, pp. 256-294
-
-
Tiwari, K.1
Gupta, R.K.2
-
25
-
-
34547855850
-
Use of phage battery to investigate the actinofloral layers of termite gut microflora
-
[CrossRef] [PubMed]
-
Kurtboke, D.I.; French, J.R.J. Use of phage battery to investigate the actinofloral layers of termite gut microflora. J. Appl. Microbiol. 2007, 103, 722–734. [CrossRef] [PubMed]
-
(2007)
J. Appl. Microbiol
, vol.103
, pp. 722-734
-
-
Kurtboke, D.I.1
French, J.R.J.2
-
26
-
-
80053195547
-
Diverse metabolic profiles of a Streptomyces strain isolated from a hyper-arid environment
-
[CrossRef] [PubMed]
-
Rateb, M.E.; Houssen, W.E.; Harrison, W.T.A.; Deng, H.; Okoro, C.K.; Asenjo, J.A.; Andrews, B.A.; Bull, A.T.; Goodfellow, M.; Ebel, R.; et al. Diverse metabolic profiles of a Streptomyces strain isolated from a hyper-arid environment. J. Nat. Prod. 2011, 74, 1965–1971. [CrossRef] [PubMed]
-
(2011)
J. Nat. Prod
, vol.74
, pp. 1965-1971
-
-
Rateb, M.E.1
Houssen, W.E.2
Harrison, W.T.A.3
Deng, H.4
Okoro, C.K.5
Asenjo, J.A.6
Andrews, B.A.7
Bull, A.T.8
Goodfellow, M.9
Ebel, R.10
-
27
-
-
58949100307
-
Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile
-
[CrossRef] [PubMed]
-
Okoro, C.K.; Brown, R.; Jones, A.L.; Andrews, B.A.; Asenjo, J.A.; Goodfellow, M.; Bull, A.T. Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile. Anton. Leeuwenhoek 2009, 95, 121–133. [CrossRef] [PubMed]
-
(2009)
Anton. Leeuwenhoek
, vol.95
, pp. 121-133
-
-
Okoro, C.K.1
Brown, R.2
Jones, A.L.3
Andrews, B.A.4
Asenjo, J.A.5
Goodfellow, M.6
Bull, A.T.7
-
28
-
-
85019738449
-
Isolation, purification and chemical characterization of a new angucyclinone compound produced by a new halotolerant Nocardiopsis sp. HR-4 strain
-
[CrossRef] [PubMed]
-
Hadj Rabia-Boukhalfa, Y.; Eveno, Y.; Karama, S.; Selama, O.; Lauga, B.; Duran, R.; Hacène, H.; Eparvier, V. Isolation, purification and chemical characterization of a new angucyclinone compound produced by a new halotolerant Nocardiopsis sp. HR-4 strain. World J. Microbiol. Biotechnol. 2017, 33. [CrossRef] [PubMed]
-
(2017)
World J. Microbiol. Biotechnol
, pp. 33
-
-
Hadj Rabia-Boukhalfa, Y.1
Eveno, Y.2
Karama, S.3
Selama, O.4
Lauga, B.5
Duran, R.6
Hacène, H.7
Eparvier, V.8
-
29
-
-
84958092582
-
New antimicrobial anthraquinone 6,61-bis (1,5,7-trihydroxy-3-hydroxymethylanthraquinone) isolated from Streptomyces sp. Isolate ERI-26
-
[CrossRef] [PubMed]
-
Duraipandiyan, V.; Al-Dhabi, N.A.; Ignacimuthu, S. New antimicrobial anthraquinone 6,61-bis (1,5,7-trihydroxy-3-hydroxymethylanthraquinone) isolated from Streptomyces sp. isolate ERI-26. Saudi J. Biol. Sci. 2016, 23, 731–735. [CrossRef] [PubMed]
-
(2016)
Saudi J. Biol. Sci
, vol.23
, pp. 731-735
-
-
Duraipandiyan, V.1
Al-Dhabi, N.A.2
Ignacimuthu, S.3
-
30
-
-
50949106931
-
Antimicrobial activity of Streptomyces spp. ERI-26 recovered fromWestern Ghats of Tamil Nadu
-
[CrossRef]
-
Arasu, M.V.; Duraipandiyan, V.; Agastian, P.; Ignacimuthu, S. Antimicrobial activity of Streptomyces spp. ERI-26 recovered from Western Ghats of Tamil Nadu. J. Mycol. Med. 2008, 18, 147–153. [CrossRef]
-
(2008)
J. Mycol. Med
, vol.18
, pp. 147-153
-
-
Arasu, M.V.1
Duraipandiyan, V.2
Agastian, P.3
Ignacimuthu, S.4
-
31
-
-
84866332775
-
Growing Unculturable Bacteria
-
[CrossRef] [PubMed]
-
Stewart, E.J. Growing Unculturable Bacteria. J. Bacteriol. 2012, 194, 4151–4160. [CrossRef] [PubMed]
-
(2012)
J. Bacteriol
, vol.194
, pp. 4151-4160
-
-
Stewart, E.J.1
-
32
-
-
35448948699
-
Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates
-
[CrossRef] [PubMed]
-
Bollmann, A.; Lewis, K.; Epstein, S.S. Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Appl. Environ. Microbiol. 2007, 73, 6386–6390. [CrossRef] [PubMed]
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 6386-6390
-
-
Bollmann, A.1
Lewis, K.2
Epstein, S.S.3
-
33
-
-
77950560416
-
Use of iChip for high-throughput in situ cultivation of “uncultivable” microbial species
-
[CrossRef] [PubMed]
-
Nichols, D.; Cahoon, N.; Trakhtenberg, E.M.; Pham, L.; Mehta, A.; Belanger, A.; Kanigan, T.; Lewis, K.; Epstein, S.S. Use of iChip for high-throughput in situ cultivation of “uncultivable” microbial species. Appl. Environ. Microbiol. 2010, 76, 2445–2450. [CrossRef] [PubMed]
-
(2010)
Appl. Environ. Microbiol
, vol.76
, pp. 2445-2450
-
-
Nichols, D.1
Cahoon, N.2
Trakhtenberg, E.M.3
Pham, L.4
Mehta, A.5
Belanger, A.6
Kanigan, T.7
Lewis, K.8
Epstein, S.S.9
-
34
-
-
55449100489
-
Neocitreamicins I and II, novel antibiotics with activity against methicillin resistant Staphylococcus aureus and vancomycin-resistant Enterococci
-
[CrossRef] [PubMed]
-
Peoples, A.J.; Zhang, Q.; Millett, W.P.; Rothfeder, M.T.; Pescatore, B.C.; Madden, A.A.; Ling, L.L.; Moore, C.M. Neocitreamicins I and II, novel antibiotics with activity against methicillin resistant Staphylococcus aureus and vancomycin-resistant Enterococci. J. Antibiot. 2008, 61, 457–463. [CrossRef] [PubMed]
-
(2008)
J. Antibiot
, vol.61
, pp. 457-463
-
-
Peoples, A.J.1
Zhang, Q.2
Millett, W.P.3
Rothfeder, M.T.4
Pescatore, B.C.5
Madden, A.A.6
Ling, L.L.7
Moore, C.M.8
-
35
-
-
0037052320
-
Isolating “uncultivable” microorganisms in pure culture in a simulated natural environment
-
[CrossRef] [PubMed]
-
Kaeberlein, T.; Lewis, K.; Epstein, S.S. Isolating “uncultivable” microorganisms in pure culture in a simulated natural environment. Science 2002, 296, 1127–1129. [CrossRef] [PubMed]
-
(2002)
Science
, vol.296
, pp. 1127-1129
-
-
Kaeberlein, T.1
Lewis, K.2
Epstein, S.S.3
-
36
-
-
85047987962
-
-
Patent WO2009026527A1, 17 January
-
Peoples, A.; Zhang, Q.; Moore, C.; Ling, L.; Rothfeder, M.; Lewis, K. Macrolactam Compounds. Patent WO2009026527A1, 17 January 2012.
-
(2012)
Macrolactam Compounds
-
-
Peoples, A.1
Zhang, Q.2
Moore, C.3
Ling, L.4
Rothfeder, M.5
Lewis, K.6
-
37
-
-
84899576523
-
Lassomycin, a ribosomally synthesized cyclic peptide, kills Mycobacterium tuberculosis by targeting the ATP-dependent protease ClpC1P1P2
-
[CrossRef] [PubMed]
-
Gavrish, E.; Sit, C.S.; Cao, S.; Kandror, O.; Spoering, A.; Peoples, A.; Ling, L.; Fetterman, A.; Hughes, D.; Bissell, A.; et al. Lassomycin, a ribosomally synthesized cyclic peptide, kills Mycobacterium tuberculosis by targeting the ATP-dependent protease ClpC1P1P2. Chem. Biol. 2014, 21, 509–518. [CrossRef] [PubMed]
-
(2014)
Chem. Biol
, vol.21
, pp. 509-518
-
-
Gavrish, E.1
Sit, C.S.2
Cao, S.3
Kandror, O.4
Spoering, A.5
Peoples, A.6
Ling, L.7
Fetterman, A.8
Hughes, D.9
Bissell, A.10
-
38
-
-
84922937832
-
A new antibiotic kills pathogens without detectable resistance
-
[CrossRef] [PubMed]
-
Ling, L.L.; Schneider, T.; Peoples, A.J.; Spoering, A.L.; Engels, I.; Conlon, B.P.; Mueller, A.; Schäberle, T.F.; Hughes, D.E.; Epstein, S.; et al. A new antibiotic kills pathogens without detectable resistance. Nature 2015, 517, 455–459. [CrossRef] [PubMed]
-
(2015)
Nature
, vol.517
, pp. 455-459
-
-
Ling, L.L.1
Schneider, T.2
Peoples, A.J.3
Spoering, A.L.4
Engels, I.5
Conlon, B.P.6
Mueller, A.7
Schäberle, T.F.8
Hughes, D.E.9
Epstein, S.10
-
39
-
-
84922394953
-
Co-culture systems and technologies: Taking synthetic biology to the next level
-
[CrossRef] [PubMed]
-
Goers, L.; Freemont, P.; Polizzi, K.M. Co-culture systems and technologies: Taking synthetic biology to the next level. J. R. Soc. Interface 2014, 11. [CrossRef] [PubMed]
-
(2014)
J. R. Soc. Interface
, pp. 11
-
-
Goers, L.1
Freemont, P.2
Polizzi, K.M.3
-
40
-
-
84901407853
-
Production of induced secondary metabolites by a co-culture of sponge-associated actinomycetes, Actinokineospora sp. EG49 and Nocardiopsis sp. RV 163
-
[CrossRef] [PubMed]
-
Dashti, Y.; Grkovic, T.; Abdelmohsen, U.R.; Hentschel, U.; Quinn, R.J. Production of induced secondary metabolites by a co-culture of sponge-associated actinomycetes, Actinokineospora sp. EG49 and Nocardiopsis sp. RV 163. Mar. Drugs 2014, 12, 3046–3059. [CrossRef] [PubMed]
-
(2014)
Mar. Drugs
, vol.12
, pp. 3046-3059
-
-
Dashti, Y.1
Grkovic, T.2
Abdelmohsen, U.R.3
Hentschel, U.4
Quinn, R.J.5
-
41
-
-
0037180507
-
Cultivating the uncultured
-
[CrossRef] [PubMed]
-
Zengler, K.; Toledo, G.; Rappe, M.; Elkins, J.; Mathur, E.J.; Short, J.M.; Keller, M. Cultivating the uncultured. Proc. Natl. Acad. Sci. USA 2002, 99, 15681–15686. [CrossRef] [PubMed]
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15681-15686
-
-
Zengler, K.1
Toledo, G.2
Rappe, M.3
Elkins, J.4
Mathur, E.J.5
Short, J.M.6
Keller, M.7
-
42
-
-
27644534254
-
High-throughput cultivation of microorganisms using microcapsules
-
Leadbetter, J.R., Ed.; Elsevier Academic Press: Amsterdam, The Netherlands; Boston, MA, USA
-
Zengler, K.; Walcher, M.; Clark, G.; Haller, I.; Toledo, G.; Holland, T.; Mathur, E.J.; Woodnutt, G.; Short, J.M.; Keller, M. High-throughput cultivation of microorganisms using microcapsules. In Environmental Microbiology; Leadbetter, J.R., Ed.; Elsevier Academic Press: Amsterdam, The Netherlands; Boston, MA, USA, 2005; pp. 124–130.
-
(2005)
Environmental Microbiology
, pp. 124-130
-
-
Zengler, K.1
Walcher, M.2
Clark, G.3
Haller, I.4
Toledo, G.5
Holland, T.6
Mathur, E.J.7
Woodnutt, G.8
Short, J.M.9
Keller, M.10
-
43
-
-
65549131146
-
An in situ method for cultivating microorganisms using a double encapsulation technique
-
[CrossRef] [PubMed]
-
Ben-Dov, E.; Kramarsky-Winter, E.; Kushmaro, A. An in situ method for cultivating microorganisms using a double encapsulation technique. FEMS Microbiol. Ecol. 2009, 68, 363–371. [CrossRef] [PubMed]
-
(2009)
FEMS Microbiol. Ecol
, vol.68
, pp. 363-371
-
-
Ben-Dov, E.1
Kramarsky-Winter, E.2
Kushmaro, A.3
-
44
-
-
79956087877
-
Directed culturing of microorganisms using metatranscriptomics
-
[CrossRef] [PubMed]
-
Bomar, L.; Maltz, M.; Colston, S.; Graf, J. Directed culturing of microorganisms using metatranscriptomics. mBio 2011, 2. [CrossRef] [PubMed]
-
(2011)
Mbio
, pp. 2
-
-
Bomar, L.1
Maltz, M.2
Colston, S.3
Graf, J.4
-
45
-
-
47749145412
-
Facilitation of robust growth of prochlorococcus colonies and dilute liquid cultures by “helper” heterotrophic bacteria
-
[CrossRef] [PubMed]
-
Morris, J.J.; Kirkegaard, R.; Szul, M.J.; Johnson, Z.I.; Zinser, E.R. Facilitation of robust growth of prochlorococcus colonies and dilute liquid cultures by “helper” heterotrophic bacteria. Appl. Environ. Microbiol. 2008, 74, 4530–4534. [CrossRef] [PubMed]
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 4530-4534
-
-
Morris, J.J.1
Kirkegaard, R.2
Szul, M.J.3
Johnson, Z.I.4
Zinser, E.R.5
-
46
-
-
2942668168
-
Catellibacterium nectariphilum gen. Nov., sp. nov., which requires a diffusible compound from a strain related to the genus Sphingomonas for vigorous growth
-
[CrossRef] [PubMed]
-
Tanaka, Y.; Hanada, S.; Manome, A.; Tsuchida, T.; Kurane, R.; Nakamura, K.; Kamagata, Y. Catellibacterium nectariphilum gen. nov., sp. nov., which requires a diffusible compound from a strain related to the genus Sphingomonas for vigorous growth. Int. J. Syst. Evol. Microbiol. 2004, 54, 955–959. [CrossRef] [PubMed]
-
(2004)
Int. J. Syst. Evol. Microbiol
, vol.54
, pp. 955-959
-
-
Tanaka, Y.1
Hanada, S.2
Manome, A.3
Tsuchida, T.4
Kurane, R.5
Nakamura, K.6
Kamagata, Y.7
-
47
-
-
80054817403
-
A commensal symbiotic interrelationship for the growth of Symbiobacterium toebii with its partner bacterium, Geobacillus toebii
-
[CrossRef] [PubMed]
-
Kim, K.; Kim, J.-J.; Masui, R.; Kuramitsu, S.; Sung, M.-H. A commensal symbiotic interrelationship for the growth of Symbiobacterium toebii with its partner bacterium, Geobacillus toebii. BMC Res. Notes 2011, 4. [CrossRef] [PubMed]
-
(2011)
BMC Res. Notes
, pp. 4
-
-
Kim, K.1
Kim, J.-J.2
Masui, R.3
Kuramitsu, S.4
Sung, M.-H.5
-
48
-
-
84860511582
-
The Black Queen Hypothesis: Evolution of dependencies through adaptive gene loss
-
[CrossRef] [PubMed]
-
Morris, J.J.; Lenski, R.E.; Zinser, E.R. The Black Queen Hypothesis: Evolution of dependencies through adaptive gene loss. mBio 2012, 3, e00036-12. [CrossRef] [PubMed]
-
(2012)
Mbio
, vol.3
, pp. e00036-e000312
-
-
Morris, J.J.1
Lenski, R.E.2
Zinser, E.R.3
-
49
-
-
84937598793
-
Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET-743
-
[CrossRef] [PubMed]
-
Schofield, M.M.; Jain, S.; Porat, D.; Dick, G.J.; Sherman, D.H. Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET-743. Environ. Microbiol. 2015, 17, 3964–3975. [CrossRef] [PubMed]
-
(2015)
Environ. Microbiol
, vol.17
, pp. 3964-3975
-
-
Schofield, M.M.1
Jain, S.2
Porat, D.3
Dick, G.J.4
Sherman, D.H.5
-
50
-
-
84929704728
-
Isolation and characterization of multifunctional Streptomyces species with antimicrobial, nematicidal and phytohormone activities from marine environments in Egypt
-
[CrossRef] [PubMed]
-
Rashad, F.M.; Fathy, H.M.; El-Zayat, A.S.; Elghonaimy, A.M. Isolation and characterization of multifunctional Streptomyces species with antimicrobial, nematicidal and phytohormone activities from marine environments in Egypt. Microbiol. Res. 2015, 175, 34–47. [CrossRef] [PubMed]
-
(2015)
Microbiol. Res
, vol.175
, pp. 34-47
-
-
Rashad, F.M.1
Fathy, H.M.2
El-Zayat, A.S.3
Elghonaimy, A.M.4
-
51
-
-
0036902202
-
Big effects from small changes: Possible ways to explore nature’s chemical diversity
-
[CrossRef]
-
Bode, H.B.; Bethe, B.; Höfs, R.; Zeeck, A. Big effects from small changes: Possible ways to explore nature’s chemical diversity. ChemBioChem 2002, 3, 619–627. [CrossRef]
-
(2002)
Chembiochem
, vol.3
, pp. 619-627
-
-
Bode, H.B.1
Bethe, B.2
Höfs, R.3
Zeeck, A.4
-
52
-
-
77955573389
-
Production of a new thiopeptide antibiotic, TP-1161, by a marine Nocardiopsis species
-
[CrossRef] [PubMed]
-
Engelhardt, K.; Degnes, K.F.; Kemmler, M.; Bredholt, H.; Fjaervik, E.; Klinkenberg, G.; Sletta, H.; Ellingsen, T.E.; Zotchev, S.B. Production of a new thiopeptide antibiotic, TP-1161, by a marine Nocardiopsis species. Appl. Environ. Microbiol. 2010, 76, 4969–4976. [CrossRef] [PubMed]
-
(2010)
Appl. Environ. Microbiol
, vol.76
, pp. 4969-4976
-
-
Engelhardt, K.1
Degnes, K.F.2
Kemmler, M.3
Bredholt, H.4
Fjaervik, E.5
Klinkenberg, G.6
Sletta, H.7
Ellingsen, T.E.8
Zotchev, S.B.9
-
53
-
-
84870577113
-
Isolation and structural elucidation of armeniaspirols A–C: Potent antibiotics against Gram-positive pathogens
-
[CrossRef] [PubMed]
-
Dufour, C.; Wink, J.; Kurz, M.; Kogler, H.; Olivan, H.; Sablé, S.; Heyse, W.; Gerlitz, M.; Toti, L.; Nußer, A.; et al. Isolation and structural elucidation of armeniaspirols A–C: Potent antibiotics against Gram-positive pathogens. Chem. Eur. J. 2012, 18, 16123–16128. [CrossRef] [PubMed]
-
(2012)
Chem. Eur. J
, vol.18
, pp. 16123-16128
-
-
Dufour, C.1
Wink, J.2
Kurz, M.3
Kogler, H.4
Olivan, H.5
Sablé, S.6
Heyse, W.7
Gerlitz, M.8
Toti, L.9
Nußer, A.10
-
54
-
-
85028561302
-
Biosynthesis of ilamycins featuring unusual building blocks and engineered production of enhanced anti-tuberculosis agents
-
[CrossRef] [PubMed]
-
Ma, J.; Huang, H.; Xie, Y.; Liu, Z.; Zhao, J.; Zhang, C.; Jia, Y.; Zhang, Y.; Zhang, H.; Zhang, T.; et al. Biosynthesis of ilamycins featuring unusual building blocks and engineered production of enhanced anti-tuberculosis agents. Nat. Commun. 2017, 8. [CrossRef] [PubMed]
-
(2017)
Nat. Commun
, pp. 8
-
-
Ma, J.1
Huang, H.2
Xie, Y.3
Liu, Z.4
Zhao, J.5
Zhang, C.6
Jia, Y.7
Zhang, Y.8
Zhang, H.9
Zhang, T.10
-
55
-
-
84875377324
-
Taxonomy and chemical characterization of new antibiotics produced by Saccharothrix SA198 isolated from a Saharan soil
-
[CrossRef] [PubMed]
-
Boubetra, D.; Sabaou, N.; Zitouni, A.; Bijani, C.; Lebrihi, A.; Mathieu, F. Taxonomy and chemical characterization of new antibiotics produced by Saccharothrix SA198 isolated from a Saharan soil. Microbiol. Res. 2013, 168, 223–230. [CrossRef] [PubMed]
-
(2013)
Microbiol. Res
, vol.168
, pp. 223-230
-
-
Boubetra, D.1
Sabaou, N.2
Zitouni, A.3
Bijani, C.4
Lebrihi, A.5
Mathieu, F.6
-
56
-
-
84862785000
-
Molecular characterization of Antarctic actinobacteria and screening for antimicrobial metabolite production
-
[CrossRef] [PubMed]
-
Lee, L.-H.; Cheah, Y.-K.; Mohd Sidik, S.; Ab Mutalib, N.-S.; Tang, Y.-L.; Lin, H.-P.; Hong, K. Molecular characterization of Antarctic actinobacteria and screening for antimicrobial metabolite production. World J. Microbiol. Biotechnol. 2012, 28, 2125–2137. [CrossRef] [PubMed]
-
(2012)
World J. Microbiol. Biotechnol
, vol.28
, pp. 2125-2137
-
-
Lee, L.-H.1
Cheah, Y.-K.2
Mohd Sidik, S.3
Ab Mutalib, N.-S.4
Tang, Y.-L.5
Lin, H.-P.6
Hong, K.7
-
57
-
-
84962779572
-
Diversity of culturable thermophilic Actinobacteria in hot springs in Tengchong, china and studies of their biosynthetic gene profiles
-
[CrossRef] [PubMed]
-
Liu, L.; Salam, N.; Jiao, J.-Y.; Jiang, H.-C.; Zhou, E.-M.; Yin, Y.-R.; Ming, H.; Li, W.-J. Diversity of culturable thermophilic Actinobacteria in hot springs in Tengchong, china and studies of their biosynthetic gene profiles. Microb. Ecol. 2016, 72, 150–162. [CrossRef] [PubMed]
-
(2016)
Microb. Ecol
, vol.72
, pp. 150-162
-
-
Liu, L.1
Salam, N.2
Jiao, J.-Y.3
Jiang, H.-C.4
Zhou, E.-M.5
Yin, Y.-R.6
Ming, H.7
Li, W.-J.8
-
58
-
-
84961755048
-
Antimicrobial potential of actinobacteria isolated from the rhizosphere of the Caatinga biome plant Caesalpinia pyramidalis Tul
-
[CrossRef] [PubMed]
-
Silva-Lacerda, G.R.; Santana, R.C.F.; Vicalvi-Costa, M.C.V.; Solidônio, E.G.; Sena, K.X.F.R.; Lima, G.M.S.; Araújo, J.M. Antimicrobial potential of actinobacteria isolated from the rhizosphere of the Caatinga biome plant Caesalpinia pyramidalis Tul. Genet. Mol. Res. 2016, 15. [CrossRef] [PubMed]
-
(2016)
Genet. Mol. Res
, pp. 15
-
-
Silva-Lacerda, G.R.1
Santana, R.C.F.2
Vicalvi-Costa, M.C.V.3
Solidônio, E.G.4
Sena, K.X.F.R.5
Lima, G.M.S.6
Araújo, J.M.7
-
59
-
-
85013434415
-
Western bats as a reservoir of novel Streptomyces species with antifungal activity
-
[CrossRef] [PubMed]
-
Hamm, P.S.; Caimi, N.A.; Northup, D.E.; Valdez, E.W.; Buecher, D.C.; Dunlap, C.A.; Labeda, D.P.; Lueschow, S.; Porras-Alfaro, A. Western bats as a reservoir of novel Streptomyces species with antifungal activity. Appl. Environ. Microbiol. 2017, 83. [CrossRef] [PubMed]
-
(2017)
Appl. Environ. Microbiol
, pp. 83
-
-
Hamm, P.S.1
Caimi, N.A.2
Northup, D.E.3
Valdez, E.W.4
Buecher, D.C.5
Dunlap, C.A.6
Labeda, D.P.7
Lueschow, S.8
Porras-Alfaro, A.9
-
60
-
-
85013846113
-
Branimycins B and C, antibiotics produced by the abyssal actinobacterium Pseudonocardia carboxydivorans M-227
-
[CrossRef] [PubMed]
-
Braña, A.F.; Sarmiento-Vizcaíno, A.; Pérez-Victoria, I.; Otero, L.; Fernández, J.; Palacios, J.J.; Martín, J.; De La Cruz, M.; Díaz, C.; Vicente, F.; et al. Branimycins B and C, antibiotics produced by the abyssal actinobacterium Pseudonocardia carboxydivorans M-227. J. Nat. Prod. 2017, 80, 569–573. [CrossRef] [PubMed]
-
(2017)
J. Nat. Prod
, vol.80
, pp. 569-573
-
-
Braña, A.F.1
Sarmiento-Vizcaíno, A.2
Pérez-Victoria, I.3
Otero, L.4
Fernández, J.5
Palacios, J.J.6
Martín, J.7
De La Cruz, M.8
Díaz, C.9
Vicente, F.10
-
61
-
-
85020033876
-
Ghanamycins A and B, two novel -butyrolactones from marine-derived Streptomyces ghanaensis TXC6-16
-
[CrossRef] [PubMed]
-
Xu, J.-H.; Gu, K.-B.; Zhang, D.-J.; Li, Y.-G.; Tian, L. Ghanamycins A and B, two novel -butyrolactones from marine-derived Streptomyces ghanaensis TXC6-16. J. Antibiot. 2017, 70, 733–736 [CrossRef] [PubMed]
-
(2017)
J. Antibiot
, vol.70
, pp. 733-736
-
-
Xu, J.-H.1
Gu, K.-B.2
Zhang, D.-J.3
Li, Y.-G.4
Tian, L.5
-
62
-
-
80052194537
-
Lobophorins E and F, new spirotetronate antibiotics from a South China Sea-derived Streptomyces sp. SCSIO01127
-
[CrossRef] [PubMed]
-
Niu, S.; Li, S.; Chen, Y.; Tian, X.; Zhang, H.; Zhang, G.; Zhang, W.; Yang, X.; Zhang, S.; Ju, J.; et al. Lobophorins E and F, new spirotetronate antibiotics from a South China Sea-derived Streptomyces sp. SCSIO01127. J. Antibiot. 2011, 64, 711–716. [CrossRef] [PubMed]
-
(2011)
J. Antibiot
, vol.64
, pp. 711-716
-
-
Niu, S.1
Li, S.2
Chen, Y.3
Tian, X.4
Zhang, H.5
Zhang, G.6
Zhang, W.7
Yang, X.8
Zhang, S.9
Ju, J.10
-
63
-
-
84935023039
-
Spithioneines A and B, two new bohemamine derivatives possessing ergothioneine moiety from a marine-derived Streptomyces spinoverrucosus
-
[CrossRef] [PubMed]
-
Fu, P.; MacMillan, J.B. Spithioneines A and B, two new bohemamine derivatives possessing ergothioneine moiety from a marine-derived Streptomyces spinoverrucosus. Org. Lett. 2015, 17, 3046–3049. [CrossRef] [PubMed]
-
(2015)
Org. Lett
, vol.17
, pp. 3046-3049
-
-
Fu, P.1
Macmillan, J.B.2
-
64
-
-
34948837927
-
Abyssomicins G and H and atrop-abyssomicin C from the marine Verrucosispora strain AB-18-032
-
[CrossRef] [PubMed]
-
Keller, S.; Nicholson, G.; Drahl, C.; Sorensen, E.; Fiedler, H.-P.; Sussmuth, R.D. Abyssomicins G and H and atrop-abyssomicin C from the marine Verrucosispora strain AB-18-032. J. Antibiot. 2007, 60, 391–394. [CrossRef] [PubMed]
-
(2007)
J. Antibiot
, vol.60
, pp. 391-394
-
-
Keller, S.1
Nicholson, G.2
Drahl, C.3
Sorensen, E.4
Fiedler, H.-P.5
Sussmuth, R.D.6
-
65
-
-
78650186701
-
Abyssomicin I, a modified polycyclic polyketide from Streptomyces sp. CHI39
-
[CrossRef] [PubMed]
-
Igarashi, Y.; Yu, L.; Miyanaga, S.; Fukuda, T.; Saitoh, N.; Sakurai, H.; Saiki, I.; Alonso-Vega, P.; Trujillo, M.E. Abyssomicin I, a modified polycyclic polyketide from Streptomyces sp. CHI39. J. Nat. Prod. 2010, 73, 1943–1946. [CrossRef] [PubMed]
-
(2010)
J. Nat. Prod
, vol.73
, pp. 1943-1946
-
-
Igarashi, Y.1
Yu, L.2
Miyanaga, S.3
Fukuda, T.4
Saitoh, N.5
Sakurai, H.6
Saiki, I.7
Alonso-Vega, P.8
Trujillo, M.E.9
-
66
-
-
34547228672
-
Abyssomicin E, a highly functionalized polycyclic metabolite from Streptomyces species
-
[CrossRef] [PubMed]
-
Niu, X.-M.; Li, S.-H.; Gorls, H.; Schollmeyer, D.; Hilliger, M.; Grabley, S.; Sattler, I. Abyssomicin E, a highly functionalized polycyclic metabolite from Streptomyces species. Org. Lett. 2007, 9, 2437–2440. [CrossRef] [PubMed]
-
(2007)
Org. Lett
, vol.9
, pp. 2437-2440
-
-
Niu, X.-M.1
Li, S.-H.2
Gorls, H.3
Schollmeyer, D.4
Hilliger, M.5
Grabley, S.6
Sattler, I.7
-
67
-
-
0037455147
-
Salinosporamide A: A highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora
-
[CrossRef] [PubMed]
-
Feling, R.H.; Buchanan, G.O.; Mincer, T.J.; Kauffman, C.A.; Jensen, P.R.; Fenical, W. Salinosporamide A: A highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora. Angew. Chem. Int. Ed. Engl. 2003, 42, 355–357. [CrossRef] [PubMed]
-
(2003)
Angew. Chem. Int. Ed. Engl
, vol.42
, pp. 355-357
-
-
Feling, R.H.1
Buchanan, G.O.2
Mincer, T.J.3
Kauffman, C.A.4
Jensen, P.R.5
Fenical, W.6
-
68
-
-
33947430908
-
Cinnabaramides A–G: Analogues of lactacystin and salinosporamide from a terrestrial streptomycete
-
[CrossRef] [PubMed]
-
Stadler, M.; Bitzer, J.; Mayer-Bartschmid, A.; Muller, H.; et-Buchholz, J.; Gantner, F.; Tichy, H.V.; Reinemer, P.; Bacon, K.B. Cinnabaramides A–G: Analogues of lactacystin and salinosporamide from a terrestrial streptomycete. J. Nat. Prod. 2007, 70, 246–252. [CrossRef] [PubMed]
-
(2007)
J. Nat. Prod
, vol.70
, pp. 246-252
-
-
Stadler, M.1
Bitzer, J.2
Mayer-Bartschmid, A.3
Muller, H.4
Et-Buchholz, J.5
Gantner, F.6
Tichy, H.V.7
Reinemer, P.8
Bacon, K.B.9
-
69
-
-
84942989129
-
Identification and preliminary characterization of non-polyene antibiotics secreted by new strain of actinomycete isolated from sebkha of Kenadsa, Algeria
-
[CrossRef]
-
Messaoudi, O.; Bendahou, M.; Benamar, I.; Abdelwouhid, D.-E. Identification and preliminary characterization of non-polyene antibiotics secreted by new strain of actinomycete isolated from sebkha of Kenadsa, Algeria. Asian Pac. J. Trop. Biomed. 2015, 5, 438–445. [CrossRef]
-
(2015)
Asian Pac. J. Trop. Biomed
, vol.5
, pp. 438-445
-
-
Messaoudi, O.1
Bendahou, M.2
Benamar, I.3
Abdelwouhid, D.-E.4
-
70
-
-
84979521016
-
Actinomadurol, an antibacterial norditerpenoid from a rare Actinomycete, Actinomadura sp. KC 191
-
[CrossRef] [PubMed]
-
Shin, B.; Kim, B.-Y.; Cho, E.; Oh, K.-B.; Shin, J.; Goodfellow, M.; Oh, D.-C. Actinomadurol, an antibacterial norditerpenoid from a rare Actinomycete, Actinomadura sp. KC 191. J. Nat. Prod. 2016, 79, 1886–1890. [CrossRef] [PubMed]
-
(2016)
J. Nat. Prod
, vol.79
, pp. 1886-1890
-
-
Shin, B.1
Kim, B.-Y.2
Cho, E.3
Oh, K.-B.4
Shin, J.5
Goodfellow, M.6
Oh, D.-C.7
-
71
-
-
84952639143
-
Isolation, identification and screening of antimicrobial thermophilic Streptomyces sp. Al-Dhabi-1 isolated from Tharban hot spring, Saudi Arabia
-
[CrossRef] [PubMed]
-
Al-Dhabi, N.A.; Esmail, G.A.; Duraipandiyan, V.; Valan Arasu, M.; Salem-Bekhit, M.M. Isolation, identification and screening of antimicrobial thermophilic Streptomyces sp. Al-Dhabi-1 isolated from Tharban hot spring, Saudi Arabia. Extremophiles 2016, 20, 79–90. [CrossRef] [PubMed]
-
(2016)
Extremophiles
, vol.20
, pp. 79-90
-
-
Al-Dhabi, N.A.1
Esmail, G.A.2
Duraipandiyan, V.3
Valan Arasu, M.4
Salem-Bekhit, M.M.5
-
72
-
-
0348109344
-
Bioprospecting for microbial endophytes and their natural products
-
[CrossRef] [PubMed]
-
Strobel, G.; Daisy, B. Bioprospecting for microbial endophytes and their natural products. Microbiol. Mol. Biol. Rev. 2003, 67, 491–502. [CrossRef] [PubMed]
-
(2003)
Microbiol. Mol. Biol. Rev
, vol.67
, pp. 491-502
-
-
Strobel, G.1
Daisy, B.2
-
73
-
-
85019903494
-
Endophytic actinomycetes: Promising source of novel bioactive compounds
-
[CrossRef] [PubMed]
-
Matsumoto, A.; Takahashi, Y. Endophytic actinomycetes: Promising source of novel bioactive compounds. J. Antibiot. 2017, 70, 514–519. [CrossRef] [PubMed]
-
(2017)
J. Antibiot
, vol.70
, pp. 514-519
-
-
Matsumoto, A.1
Takahashi, Y.2
-
74
-
-
85010224335
-
Genome sequence of Streptomyces sp. Strain RTd22, an endophyte of the Mexican sunflower
-
[CrossRef] [PubMed]
-
Chagas, F.O.; Ruzzini, A.C.; Bacha, L.V.; Samborskyy, M.; Conti, R.; Pessotti, R.C.; de Oliveira, L.G.; Clardy, J.; Pupo, M.T. Genome sequence of Streptomyces sp. strain RTd22, an endophyte of the Mexican sunflower. Genome Announc. 2016, 4. [CrossRef] [PubMed]
-
(2016)
Genome Announc
, pp. 4
-
-
Chagas, F.O.1
Ruzzini, A.C.2
Bacha, L.V.3
Samborskyy, M.4
Conti, R.5
Pessotti, R.C.6
De Oliveira, L.G.7
Clardy, J.8
Pupo, M.T.9
-
75
-
-
77956996758
-
A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus
-
[CrossRef] [PubMed]
-
Barke, J.; Seipke, R.F.; Grüschow, S.; Heavens, D.; Drou, N.; Bibb, M.J.; Goss, R.J.M.; Yu, D.W.; Hutchings, M.I. A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus. BMC Biol. 2010, 8. [CrossRef] [PubMed]
-
(2010)
BMC Biol
, pp. 8
-
-
Barke, J.1
Seipke, R.F.2
Grüschow, S.3
Heavens, D.4
Drou, N.5
Bibb, M.J.6
Goss, R.J.M.7
Yu, D.W.8
Hutchings, M.I.9
-
76
-
-
79951601794
-
Sceliphrolactam, a polyene macrocyclic lactam from a wasp-associated Streptomyces sp
-
[CrossRef] [PubMed]
-
Oh, D.-C.; Poulsen, M.; Currie, C.R.; Clardy, J. Sceliphrolactam, a polyene macrocyclic lactam from a wasp-associated Streptomyces sp. Org. Lett. 2011, 13, 752–755. [CrossRef] [PubMed]
-
(2011)
Org. Lett
, vol.13
, pp. 752-755
-
-
Oh, D.-C.1
Poulsen, M.2
Currie, C.R.3
Clardy, J.4
-
77
-
-
85014644235
-
Macrotermycins A–D, glycosylated macrolactams from a termite-associated Amycolatopsis sp. M 39
-
[CrossRef] [PubMed]
-
Beemelmanns, C.; Ramadhar, T.R.; Kim, K.H.; Klassen, J.L.; Cao, S.; Wyche, T.P.; Hou, Y.; Poulsen, M.; Bugni, T.S.; Currie, C.R.; et al. Macrotermycins A–D, glycosylated macrolactams from a termite-associated Amycolatopsis sp. M 39. Org. Lett. 2017, 19, 1000–1003. [CrossRef] [PubMed]
-
(2017)
Org. Lett
, vol.19
, pp. 1000-1003
-
-
Beemelmanns, C.1
Ramadhar, T.R.2
Kim, K.H.3
Klassen, J.L.4
Cao, S.5
Wyche, T.P.6
Hou, Y.7
Poulsen, M.8
Bugni, T.S.9
Currie, C.R.10
-
78
-
-
84907510697
-
Natalamycin A, an ansamycin from a termite-associated Streptomyces sp
-
[CrossRef] [PubMed]
-
Kim, K.H.; Ramadhar, T.R.; Beemelmanns, C.; Cao, S.; Poulsen, M.; Currie, C.R.; Clardy, J. Natalamycin A, an ansamycin from a termite-associated Streptomyces sp. Chem. Sci. 2014, 5, 4333–4338. [CrossRef] [PubMed]
-
(2014)
Chem. Sci
, vol.5
, pp. 4333-4338
-
-
Kim, K.H.1
Ramadhar, T.R.2
Beemelmanns, C.3
Cao, S.4
Poulsen, M.5
Currie, C.R.6
Clardy, J.7
-
79
-
-
84945543989
-
Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants
-
[CrossRef] [PubMed]
-
Sit, C.S.; Ruzzini, A.C.; van Arnam, E.B.; Ramadhar, T.R.; Currie, C.R.; Clardy, J. Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants. Proc. Natl. Acad. Sci. USA 2015, 112, 13150–13154. [CrossRef] [PubMed]
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 13150-13154
-
-
Sit, C.S.1
Ruzzini, A.C.2
Van Arnam, E.B.3
Ramadhar, T.R.4
Currie, C.R.5
Clardy, J.6
-
80
-
-
0021816422
-
Isolation and structure of rebeccamycin—A new antitumor antibiotic from Nocardia aerocoligenes
-
[CrossRef]
-
Nettleton, D.E.; Doyle, T.W.; Krishnan, B.; Matsumoto, G.K.; Clardy, J. Isolation and structure of rebeccamycin—A new antitumor antibiotic from Nocardia aerocoligenes. Tetrahedron Lett. 1985, 26, 4011–4014. [CrossRef]
-
(1985)
Tetrahedron Lett
, vol.26
, pp. 4011-4014
-
-
Nettleton, D.E.1
Doyle, T.W.2
Krishnan, B.3
Matsumoto, G.K.4
Clardy, J.5
-
81
-
-
84947802097
-
Rebeccamycin analog provides plasmid-encoded niche defense
-
[CrossRef] [PubMed]
-
Van Arnam, E.B.; Ruzzini, A.C.; Sit, C.S.; Currie, C.R.; Clardy, J. A rebeccamycin analog provides plasmid-encoded niche defense. J. Am. Chem. Soc. 2015, 137, 14272–14274. [CrossRef] [PubMed]
-
(2015)
J. Am. Chem. Soc
, vol.137
, pp. 14272-14274
-
-
Van Arnam, E.B.1
Ruzzini, A.C.2
Sit, C.S.3
Currie, C.R.4
Clardy, J.A.5
-
82
-
-
85029714440
-
A polycyclic peptide from a fungus-derived streptomycete
-
[CrossRef] [PubMed]
-
Wyche, T.P.; Ruzzini, A.C.; Schwab, L.; Currie, C.R.; Clardy, J. Tryptorubin A: A polycyclic peptide from a fungus-derived streptomycete. J. Am. Chem. Soc. 2017, 139, 12899–12902. [CrossRef] [PubMed]
-
(2017)
J. Am. Chem. Soc
, vol.139
, pp. 12899-12902
-
-
Wyche, T.P.1
Ruzzini, A.C.2
Schwab, L.3
Currie, C.R.4
Clardy, J.5
Tryptorubin, A.6
-
83
-
-
79952283235
-
Culturability and secondary metabolite diversity of extreme microbes: Expanding contribution of deep sea and deep-sea vent microbes to natural product discovery
-
[CrossRef] [PubMed]
-
Pettit, R.K. Culturability and secondary metabolite diversity of extreme microbes: Expanding contribution of deep sea and deep-sea vent microbes to natural product discovery. Mar. Biotechnol. 2011, 13, 1–11. [CrossRef] [PubMed]
-
(2011)
Mar. Biotechnol
, vol.13
, pp. 1-11
-
-
Pettit, R.K.1
-
84
-
-
58149188238
-
Molecules derived from the extremes of life
-
[CrossRef] [PubMed]
-
Wilson, Z.E.; Brimble, M.A. Molecules derived from the extremes of life. Nat. Prod. Rep. 2009, 26, 44–71. [CrossRef] [PubMed]
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 44-71
-
-
Wilson, Z.E.1
Brimble, M.A.2
-
85
-
-
70350230400
-
Metagenomic approaches to natural products from free-living and symbiotic organisms
-
[CrossRef] [PubMed]
-
Brady, S.F.; Simmons, L.; Kim, J.H.; Schmidt, E.W. Metagenomic approaches to natural products from free-living and symbiotic organisms. Nat. Prod. Rep. 2009, 26, 1488–1503. [CrossRef] [PubMed]
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 1488-1503
-
-
Brady, S.F.1
Simmons, L.2
Kim, J.H.3
Schmidt, E.W.4
-
86
-
-
84983440159
-
Metagenomic applications in environmental monitoring and bioremediation
-
[CrossRef] [PubMed]
-
Techtmann, S.M.; Hazen, T.C. Metagenomic applications in environmental monitoring and bioremediation. J. Ind. Microbiol. Biotechnol. 2016, 43, 1345–1354. [CrossRef] [PubMed]
-
(2016)
J. Ind. Microbiol. Biotechnol
, vol.43
, pp. 1345-1354
-
-
Techtmann, S.M.1
Hazen, T.C.2
-
87
-
-
69749090051
-
Nitrate removal using Brevundimonas diminuta MTCC 8486 from ground water
-
[CrossRef] [PubMed]
-
Kavitha, S.; Selvakumar, R.; Sathishkumar, M.; Swaminathan, K.; Lakshmanaperumalsamy, P.; Singh, A.; Jain, S.K. Nitrate removal using Brevundimonas diminuta MTCC 8486 from ground water. Water Sci. Technol. 2009, 60, 517–524. [CrossRef] [PubMed]
-
(2009)
Water Sci. Technol
, vol.60
, pp. 517-524
-
-
Kavitha, S.1
Selvakumar, R.2
Sathishkumar, M.3
Swaminathan, K.4
Lakshmanaperumalsamy, P.5
Singh, A.6
Jain, S.K.7
-
88
-
-
84857097221
-
Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site
-
[CrossRef] [PubMed]
-
Green, S.J.; Prakash, O.; Jasrotia, P.; Overholt, W.A.; Cardenas, E.; Hubbard, D.; Tiedje, J.M.; Watson, D.B.; Schadt, C.W.; Brooks, S.C.; et al. Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Appl. Environ. Microbiol. 2012, 78, 1039–1047. [CrossRef] [PubMed]
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 1039-1047
-
-
Green, S.J.1
Prakash, O.2
Jasrotia, P.3
Overholt, W.A.4
Cardenas, E.5
Hubbard, D.6
Tiedje, J.M.7
Watson, D.B.8
Schadt, C.W.9
Brooks, S.C.10
-
89
-
-
84885112335
-
Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico
-
[CrossRef] [PubMed]
-
Dubinsky, E.A.; Conrad, M.E.; Chakraborty, R.; Bill, M.; Borglin, S.E.; Hollibaugh, J.T.; Mason, O.U.; Piceno, Y.M.; Reid, F.C.; Stringfellow, W.T.; et al. Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico. Environ. Sci. Technol. 2013, 47, 10860–10867. [CrossRef] [PubMed]
-
(2013)
Environ. Sci. Technol
, vol.47
, pp. 10860-10867
-
-
Dubinsky, E.A.1
Conrad, M.E.2
Chakraborty, R.3
Bill, M.4
Borglin, S.E.5
Hollibaugh, J.T.6
Mason, O.U.7
Piceno, Y.M.8
Reid, F.C.9
Stringfellow, W.T.10
-
90
-
-
84934985447
-
Mining the microbial dark matter
-
[CrossRef] [PubMed]
-
Lok, C. Mining the microbial dark matter. Nature 2015, 522, 270–273. [CrossRef] [PubMed]
-
(2015)
Nature
, vol.522
, pp. 270-273
-
-
Lok, C.1
-
91
-
-
0035963668
-
Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA
-
[CrossRef] [PubMed]
-
Brady, S.F.; Chao, C.J.; Handelsman, J.; Clardy, J. Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org. Lett. 2001, 3, 1981–1984. [CrossRef] [PubMed]
-
(2001)
Org. Lett
, vol.3
, pp. 1981-1984
-
-
Brady, S.F.1
Chao, C.J.2
Handelsman, J.3
Clardy, J.4
-
92
-
-
84929493030
-
Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors
-
[CrossRef] [PubMed]
-
Owen, J.G.; Charlop-Powers, Z.; Smith, A.G.; Ternei, M.A.; Calle, P.Y.; Reddy, B.V.B.; Montiel, D.; Brady, S.F. Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors. Proc. Natl. Acad. Sci. USA 2015, 112, 4221–4226. [CrossRef] [PubMed]
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 4221-4226
-
-
Owen, J.G.1
Charlop-Powers, Z.2
Smith, A.G.3
Ternei, M.A.4
Calle, P.Y.5
Reddy, B.V.B.6
Montiel, D.7
Brady, S.F.8
-
93
-
-
84958105846
-
Culture-independent discovery of natural products from soil metagenomes
-
[CrossRef] [PubMed]
-
Katz, M.; Hover, B.M.; Brady, S.F. Culture-independent discovery of natural products from soil metagenomes. J. Ind. Microbiol. Biotechnol. 2016, 43, 129–141. [CrossRef] [PubMed]
-
(2016)
J. Ind. Microbiol. Biotechnol
, vol.43
, pp. 129-141
-
-
Katz, M.1
Hover, B.M.2
Brady, S.F.3
-
94
-
-
85018211019
-
Characterization of metabolites produced by E. Coli and analysis of its chemical compounds using GC-MS
-
Altaee, N.; Jawad, M.; Hameed, I. Characterization of metabolites produced by E. coli and analysis of its chemical compounds using GC-MS. IJCPR 2017, 7, 393–399.
-
(2017)
IJCPR
, vol.7
, pp. 393-399
-
-
Altaee, N.1
Jawad, M.2
Hameed, I.3
-
95
-
-
79952118723
-
Wide host-range cloning for functional metagenomics
-
Streit, W.R., Daniel, R., Eds.; Humana: London, UK; Springer: New York, NY, USA
-
Wexler, M.; Johnston, A. W.B. Wide host-range cloning for functional metagenomics. In Metagenomics: Methods and Protocols; Streit, W.R., Daniel, R., Eds.; Humana: London, UK; Springer: New York, NY, USA, 2010; pp. 77–96.
-
(2010)
Metagenomics: Methods and Protocols
, pp. 77-96
-
-
Wexler, M.1
Johnston, A.W.B.2
-
96
-
-
4344598273
-
Quantifying the accessibility of the metagenome by random expression cloning techniques
-
[CrossRef] [PubMed]
-
Gabor, E.M.; Alkema, W.B.; Janssen, D.B. Quantifying the accessibility of the metagenome by random expression cloning techniques. Environ. Microbiol. 2004, 6, 879–886. [CrossRef] [PubMed]
-
(2004)
Environ. Microbiol
, vol.6
, pp. 879-886
-
-
Gabor, E.M.1
Alkema, W.B.2
Janssen, D.B.3
-
97
-
-
84878387809
-
Alternative sigma factor over-expression enables heterologous expression of a type II polyketide biosynthetic pathway in Escherichia coli
-
[CrossRef] [PubMed]
-
Stevens, D.C.; Conway, K.R.; Pearce, N.; Villegas-Penaranda, L.R.; Garza, A.G.; Boddy, C.N. Alternative sigma factor over-expression enables heterologous expression of a type II polyketide biosynthetic pathway in Escherichia coli. PLoS ONE 2013, 8, e64858. [CrossRef] [PubMed]
-
(2013)
Plos ONE
, vol.8
-
-
Stevens, D.C.1
Conway, K.R.2
Pearce, N.3
Villegas-Penaranda, L.R.4
Garza, A.G.5
Boddy, C.N.6
-
98
-
-
0035793858
-
Biosynthesis of complex polyketides in a metabolically engineered strain of E. Coli
-
[CrossRef] [PubMed]
-
Pfeifer, B.A.; Admiraal, S.J.; Gramajo, H.; Cane, D.E.; Khosla, C. Biosynthesis of complex polyketides in a metabolically engineered strain of E. coli. Science 2001, 291, 1790–1792. [CrossRef] [PubMed]
-
(2001)
Science
, vol.291
, pp. 1790-1792
-
-
Pfeifer, B.A.1
Admiraal, S.J.2
Gramajo, H.3
Cane, D.E.4
Khosla, C.5
-
99
-
-
2942635105
-
Precursor-directed biosynthesis of epothilone in Escherichia coli
-
[CrossRef] [PubMed]
-
Boddy, C.N.; Hotta, K.; Tse, M.L.; Watts, R.E.; Khosla, C. Precursor-directed biosynthesis of epothilone in Escherichia coli. J. Am. Chem. Soc. 2004, 126, 7436–7437. [CrossRef] [PubMed]
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 7436-7437
-
-
Boddy, C.N.1
Hotta, K.2
Tse, M.L.3
Watts, R.E.4
Khosla, C.5
-
100
-
-
33746354671
-
Total biosynthesis of antitumor nonribosomal peptides in Escherichia coli
-
[CrossRef] [PubMed]
-
Watanabe, K.; Hotta, K.; Praseuth, A.P.; Koketsu, K.; Migita, A.; Boddy, C.N.; Wang, C.C.; Oguri, H.; Oikawa, H. Total biosynthesis of antitumor nonribosomal peptides in Escherichia coli. Nat. Chem. Biol. 2006, 2, 423–428. [CrossRef] [PubMed]
-
(2006)
Nat. Chem. Biol
, vol.2
, pp. 423-428
-
-
Watanabe, K.1
Hotta, K.2
Praseuth, A.P.3
Koketsu, K.4
Migita, A.5
Boddy, C.N.6
Wang, C.C.7
Oguri, H.8
Oikawa, H.9
-
101
-
-
84965034936
-
New insights into the biosynthetic logic of ribosomally synthesized and post-translationally modified peptide natural products
-
[CrossRef] [PubMed]
-
Ortega, M.A.; Van Der Donk, W.A. New insights into the biosynthetic logic of ribosomally synthesized and post-translationally modified peptide natural products. Cell Chem. Biol. 2016, 23, 31–44. [CrossRef] [PubMed]
-
(2016)
Cell Chem. Biol
, vol.23
, pp. 31-44
-
-
Ortega, M.A.1
Van Der Donk, W.A.2
-
102
-
-
84893170608
-
Recent advances in the heterologous expression of microbial natural product biosynthetic pathways
-
[CrossRef] [PubMed]
-
Ongley, S.; Bian, X.; Neilan, B.A.; Müller, R. Recent advances in the heterologous expression of microbial natural product biosynthetic pathways. Nat. Prod. Rep. 2013, 30, 1121–1138. [CrossRef] [PubMed]
-
(2013)
Nat. Prod. Rep
, vol.30
, pp. 1121-1138
-
-
Ongley, S.1
Bian, X.2
Neilan, B.A.3
Müller, R.4
-
103
-
-
85047977960
-
-
Ph.D. Thesis, Fachbereich Biowissenschaftern und Psychologie, Technische Carolo-Wilhemina-Universität, Braunschweig, Germany
-
Wenzel, S.C. Biosynthesis and Heterologous Production of Myxobacterial Secondary Metabolites. Ph.D. Thesis, Fachbereich Biowissenschaftern und Psychologie, Technische Carolo-Wilhemina-Universität, Braunschweig, Germany, 2005.
-
(2005)
Biosynthesis and Heterologous Production of Myxobacterial Secondary Metabolites
-
-
Wenzel, S.C.1
-
104
-
-
29144482711
-
Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria
-
[CrossRef] [PubMed]
-
Ferrari, B.C.; Binnerup, S.J.; Gillings, M. Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria. Appl. Environ. Microbiol. 2005, 71, 8714–8720. [CrossRef] [PubMed]
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 8714-8720
-
-
Ferrari, B.C.1
Binnerup, S.J.2
Gillings, M.3
-
105
-
-
0035200190
-
Pestalone, a new antibiotic produced by a marine fungus in response to bacterial challenge
-
[CrossRef] [PubMed]
-
Cueto, M.; Jensen, P.R.; Kauffman, C.; Fenical, W.; Lobkovsky, E.; Clardy, J. Pestalone, a new antibiotic produced by a marine fungus in response to bacterial challenge. J. Nat. Prod. 2001, 64, 1444–1446. [CrossRef] [PubMed]
-
(2001)
J. Nat. Prod
, vol.64
, pp. 1444-1446
-
-
Cueto, M.1
Jensen, P.R.2
Kauffman, C.3
Fenical, W.4
Lobkovsky, E.5
Clardy, J.6
-
106
-
-
84867642336
-
Use and discovery of chemical elicitors that stimulate biosynthetic gene clusters in Streptomyces bacteria
-
[PubMed]
-
Moore, J.M.; Bradshaw, E.; Seipke, R.F.; Hutchings, M.I.; McArthur, M. Use and discovery of chemical elicitors that stimulate biosynthetic gene clusters in Streptomyces bacteria. Methods Enzymol. 2012, 517, 367–385. [PubMed]
-
(2012)
Methods Enzymol
, vol.517
, pp. 367-385
-
-
Moore, J.M.1
Bradshaw, E.2
Seipke, R.F.3
Hutchings, M.I.4
McArthur, M.5
-
107
-
-
84937722803
-
Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters
-
[CrossRef] [PubMed]
-
Montiel, D.; Kang, H.-S.; Chang, F.-Y.; Charlop-Powers, Z.; Brady, S.F. Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters. Proc. Natl. Acad. Sci. USA 2015, 112, 8953–8958. [CrossRef] [PubMed]
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 8953-8958
-
-
Montiel, D.1
Kang, H.-S.2
Chang, F.-Y.3
Charlop-Powers, Z.4
Brady, S.F.5
-
108
-
-
84889261817
-
Discovery and synthetic refactoring of tryptophan dimer gene clusters from the environment
-
[CrossRef] [PubMed]
-
Chang, F.-Y.; Ternei, M.A.; Calle, P.Y.; Brady, S.F. Discovery and synthetic refactoring of tryptophan dimer gene clusters from the environment. J. Am. Chem. Soc. 2013, 135, 17906–17912. [CrossRef] [PubMed]
-
(2013)
J. Am. Chem. Soc
, vol.135
, pp. 17906-17912
-
-
Chang, F.-Y.1
Ternei, M.A.2
Calle, P.Y.3
Brady, S.F.4
-
109
-
-
84941002573
-
Targeted metagenomics as a tool to tap into marine natural product diversity for the discovery and production of drug candidates
-
[CrossRef] [PubMed]
-
Trindade, M.; van Zyl, L.J.; Navarro-Fernández, J.; Abd Elrazak, A. Targeted metagenomics as a tool to tap into marine natural product diversity for the discovery and production of drug candidates. Front. Microbiol. 2015, 6. [CrossRef] [PubMed]
-
(2015)
Front. Microbiol
, pp. 6
-
-
Trindade, M.1
Van Zyl, L.J.2
Navarro-Fernández, J.3
Abd Elrazak, A.4
-
110
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
[CrossRef] [PubMed]
-
Williamson, L.L.; Borlee, B.R.; Schloss, P.D.; Guan, C.; Allen, H.K.; Handelsman, J. Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl. Environ. Microbiol. 2005, 71, 6335–6344. [CrossRef] [PubMed]
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
Borlee, B.R.2
Schloss, P.D.3
Guan, C.4
Allen, H.K.5
Handelsman, J.6
-
111
-
-
19144369096
-
Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes
-
[CrossRef] [PubMed]
-
Uchiyama, T.; Abe, T.; Ikemura, T.; Watanabe, K. Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nat. Biotechnol. 2005, 23, 88–93. [CrossRef] [PubMed]
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 88-93
-
-
Uchiyama, T.1
Abe, T.2
Ikemura, T.3
Watanabe, K.4
-
112
-
-
29144519503
-
Characterization of a forest soil metagenome clone that confers indirubin and indigo production on Escherichia coli
-
[CrossRef] [PubMed]
-
Lim, H.K.; Chung, E.J.; Kim, J.-C.; Choi, G.J.; Jang, K.S.; Chung, Y.R.; Cho, K.Y.; Lee, S.-W. Characterization of a forest soil metagenome clone that confers indirubin and indigo production on Escherichia coli. Appl. Environ. Microbiol. 2005, 71, 7768–7777. [CrossRef] [PubMed]
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 7768-7777
-
-
Lim, H.K.1
Chung, E.J.2
Kim, J.-C.3
Choi, G.J.4
Jang, K.S.5
Chung, Y.R.6
Cho, K.Y.7
Lee, S.-W.8
-
113
-
-
0037189889
-
New natural product families from an environmental DNA (EDNA) gene cluster
-
[CrossRef] [PubMed]
-
Brady, S.F.; Chao, C.J.; Clardy, J. New natural product families from an environmental DNA (eDNA) gene cluster. J. Am. Chem. Soc. 2002, 124, 9968–9969. [CrossRef] [PubMed]
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 9968-9969
-
-
Brady, S.F.1
Chao, C.J.2
Clardy, J.3
-
114
-
-
0036727242
-
Isolation of antibiotics turbomycin A and B from a metagenomic library of soil microbial DNA
-
[CrossRef] [PubMed]
-
Gillespie, D.E.; Brady, S.F.; Bettermann, A.D.; Cianciotto, N.P.; Liles, M.R.; Rondon, M.R.; Clardy, J.; Goodman, R.M.; Handelsman, J. Isolation of antibiotics turbomycin A and B from a metagenomic library of soil microbial DNA. Appl. Environ. Microbiol. 2002, 68, 4301–4306. [CrossRef] [PubMed]
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 4301-4306
-
-
Gillespie, D.E.1
Brady, S.F.2
Bettermann, A.D.3
Cianciotto, N.P.4
Liles, M.R.5
Rondon, M.R.6
Clardy, J.7
Goodman, R.M.8
Handelsman, J.9
-
115
-
-
85017549714
-
Using natural products for drug discovery: The impact of the genomics era
-
[CrossRef] [PubMed]
-
Zhang, M.M.; Qiao, Y.; Ang, E.L.; Zhao, H. Using natural products for drug discovery: The impact of the genomics era. Expert Opin. Drug Discov. 2017, 12, 475–487. [CrossRef] [PubMed]
-
(2017)
Expert Opin. Drug Discov
, vol.12
, pp. 475-487
-
-
Zhang, M.M.1
Qiao, Y.2
Ang, E.L.3
Zhao, H.4
-
116
-
-
67349240597
-
Aharoni, A. Interplay of metagenomics and in vitro compartmentalization
-
[CrossRef] [PubMed]
-
Ferrer, M.; Beloqui, A.; Vieites, J.M.; Guazzaroni, M.E.; Berger, I.; Aharoni, A. Interplay of metagenomics and in vitro compartmentalization. Microb. Biotechnol. 2009, 2, 31–39. [CrossRef] [PubMed]
-
(2009)
Microb. Biotechnol
, vol.2
, pp. 31-39
-
-
Ferrer, M.1
Beloqui, A.2
Vieites, J.M.3
Guazzaroni, M.E.4
Berger, I.5
-
117
-
-
84859988527
-
A functional screen for recovery of 4’-phosphopantetheinyl transferase and associated natural product biosynthesis genes from metagenome libraries
-
[CrossRef] [PubMed]
-
Owen, J.G.; Robins, K.J.; Parachin, N.S.; Ackerley, D.F. A functional screen for recovery of 4’-phosphopantetheinyl transferase and associated natural product biosynthesis genes from metagenome libraries. Environ. Microbiol. 2012, 14, 1198–1209. [CrossRef] [PubMed]
-
(2012)
Environ. Microbiol
, vol.14
, pp. 1198-1209
-
-
Owen, J.G.1
Robins, K.J.2
Parachin, N.S.3
Ackerley, D.F.4
-
118
-
-
84890057926
-
The phosphopantetheinyl transferases: Catalysis of a post-translational modification crucial for life
-
[CrossRef] [PubMed]
-
Beld, J.; Sonnenschein, E.C.; Vickery, C.R.; Noel, J.P.; Burkart, M.D. The phosphopantetheinyl transferases: Catalysis of a post-translational modification crucial for life. Nat. Prod. Rep. 2013, 31, 61–108. [CrossRef] [PubMed]
-
(2013)
Nat. Prod. Rep
, vol.31
, pp. 61-108
-
-
Beld, J.1
Sonnenschein, E.C.2
Vickery, C.R.3
Noel, J.P.4
Burkart, M.D.5
-
119
-
-
85031931508
-
Identification of biosynthetic gene clusters from metagenomic libraries using PPTase complementation in a Streptomyces host
-
[CrossRef] [PubMed]
-
Bitok, J.K.; Lemetre, C.; Ternei, M.A.; Brady, S.F. Identification of biosynthetic gene clusters from metagenomic libraries using PPTase complementation in a Streptomyces host. FEMS Microbiol. Lett. 2017, 364. [CrossRef] [PubMed]
-
(2017)
FEMS Microbiol. Lett
, pp. 364
-
-
Bitok, J.K.1
Lemetre, C.2
Ternei, M.A.3
Brady, S.F.4
-
120
-
-
0035949602
-
In vitro reconstitution of the myxochelin biosynthetic machinery of Stigmatella aurantiaca Sg a15: Biochemical characterization of a reductive release mechanism from nonribosomal peptide synthetases
-
[CrossRef] [PubMed]
-
Gaitatzis, N.; Kunze, B.; Müller, R. In vitro reconstitution of the myxochelin biosynthetic machinery of Stigmatella aurantiaca Sg a15: Biochemical characterization of a reductive release mechanism from nonribosomal peptide synthetases. Proc. Natl. Acad. Sci. USA 2001, 98, 11136–11141. [CrossRef] [PubMed]
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11136-11141
-
-
Gaitatzis, N.1
Kunze, B.2
Müller, R.3
-
121
-
-
84979859096
-
AntiSMASH 3.0—A comprehensive resource for the genome mining of biosynthetic gene clusters
-
[CrossRef] [PubMed]
-
Weber, T.; Blin, K.; Duddela, S.; Krug, D.; Kim, H.U.; Bruccoleri, R.; Lee, S.Y.; Fischbach, M.A.; Müller, R.; Wohlleben, W.; et al. antiSMASH 3.0—A comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res. 2015, 43, W237–W243. [CrossRef] [PubMed]
-
(2015)
Nucleic Acids Res
, vol.43
, pp. W237-W243
-
-
Weber, T.1
Blin, K.2
Duddela, S.3
Krug, D.4
Kim, H.U.5
Bruccoleri, R.6
Lee, S.Y.7
Fischbach, M.A.8
Müller, R.9
Wohlleben, W.10
-
122
-
-
85020822860
-
AntiSMASH 4.0—Improvements in chemistry prediction and gene cluster boundary identification
-
[CrossRef] [PubMed]
-
Blin, K.; Wolf, T.; Chevrette, M.G.; Lu, X.; Schwalen, C.J.; Kautsar, S.A.; Suarez Duran, H.G.; de Los Santos, E.L.C.; Kim, H.U.; Nave, M.; et al. antiSMASH 4.0—Improvements in chemistry prediction and gene cluster boundary identification. Nucleic Acids Res 2017, 45, W36–W41. [CrossRef] [PubMed]
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W36-W41
-
-
Blin, K.1
Wolf, T.2
Chevrette, M.G.3
Lu, X.4
Schwalen, C.J.5
Kautsar, S.A.6
Suarez Duran, H.G.7
De Los Santos, E.L.C.8
Kim, H.U.9
Nave, M.10
-
123
-
-
84920263575
-
ESNaPD: A versatile, web-based bioinformatics platform for surveying and mining natural product biosynthetic diversity from metagenomes
-
[CrossRef] [PubMed]
-
Reddy, B.V.B.; Milshteyn, A.; Charlop-Powers, Z.; Brady, S.F. eSNaPD: A versatile, web-based bioinformatics platform for surveying and mining natural product biosynthetic diversity from metagenomes. Chem. Biol. 2014, 21, 1023–1033. [CrossRef] [PubMed]
-
(2014)
Chem. Biol
, vol.21
, pp. 1023-1033
-
-
Reddy, B.V.B.1
Milshteyn, A.2
Charlop-Powers, Z.3
Brady, S.F.4
-
124
-
-
84859078407
-
The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
-
[CrossRef] [PubMed]
-
Ziemert, N.; Podell, S.; Penn, K.; Badger, J.H.; Allen, E.; Jensen, P.R. The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS ONE 2012, 7, e34064. [CrossRef] [PubMed]
-
(2012)
Plos ONE
, vol.7
-
-
Ziemert, N.1
Podell, S.2
Penn, K.3
Badger, J.H.4
Allen, E.5
Jensen, P.R.6
-
125
-
-
84880370987
-
Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products
-
[CrossRef] [PubMed]
-
Owen, J.G.; Reddy, B.V.; Ternei, M.A.; Charlop-Powers, Z.; Calle, P.Y.; Kim, J.H.; Brady, S.F. Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products. Proc. Natl. Acad. Sci. USA 2013, 110, 11797–11802. [CrossRef] [PubMed]
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 11797-11802
-
-
Owen, J.G.1
Reddy, B.V.2
Ternei, M.A.3
Charlop-Powers, Z.4
Calle, P.Y.5
Kim, J.H.6
Brady, S.F.7
-
127
-
-
84883201109
-
Deep sequencing of non-ribosomal peptide synthetases and polyketide synthases from the microbiomes of Australian marine sponges
-
[CrossRef] [PubMed]
-
Woodhouse, J.N.; Fan, L.; Brown, M.V.; Thomas, T.; Neilan, B.A. Deep sequencing of non-ribosomal peptide synthetases and polyketide synthases from the microbiomes of Australian marine sponges. ISME J. 2013, 7, 1842–1851. [CrossRef] [PubMed]
-
(2013)
ISME J
, vol.7
, pp. 1842-1851
-
-
Woodhouse, J.N.1
Fan, L.2
Brown, M.V.3
Thomas, T.4
Neilan, B.A.5
-
128
-
-
84922016929
-
Nucleoside antibiotics: Biosynthesis, regulation, and biotechnology
-
[CrossRef] [PubMed]
-
Niu, G.; Tan, H. Nucleoside antibiotics: Biosynthesis, regulation, and biotechnology. Trends Microbiol. 2015, 23, 110–119. [CrossRef] [PubMed]
-
(2015)
Trends Microbiol
, vol.23
, pp. 110-119
-
-
Niu, G.1
Tan, H.2
-
129
-
-
79961225518
-
Functional analysis of environmental DNA-derived type II polyketide synthases reveals structurally diverse secondary metabolites
-
[CrossRef] [PubMed]
-
Feng, Z.Y.; Kallifidas, D.; Brady, S.F. Functional analysis of environmental DNA-derived type II polyketide synthases reveals structurally diverse secondary metabolites. Proc. Natl. Acad. Sci. USA 2011, 108, 12629–12634. [CrossRef] [PubMed]
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 12629-12634
-
-
Feng, Z.Y.1
Kallifidas, D.2
Brady, S.F.3
-
130
-
-
78149262735
-
Tailoring enzyme-rich environmental DNA clones: A source of enzymes for generating libraries of unnatural natural products
-
[CrossRef] [PubMed]
-
Banik, J.J.; Craig, J.W.; Calle, P.Y.; Brady, S.F. Tailoring enzyme-rich environmental DNA clones: A source of enzymes for generating libraries of unnatural natural products. J. Am. Chem. Soc. 2010, 132, 15661–15670. [CrossRef] [PubMed]
-
(2010)
J. Am. Chem. Soc
, vol.132
, pp. 15661-15670
-
-
Banik, J.J.1
Craig, J.W.2
Calle, P.Y.3
Brady, S.F.4
-
131
-
-
79955002051
-
Isolation and characterization of a novel tannase from a metagenomic library
-
[CrossRef] [PubMed]
-
Yao, J.; Fan, X.J.; Lu, Y.; Liu, Y.H. Isolation and characterization of a novel tannase from a metagenomic library. J. Agric. Food Chem. 2011, 59, 3812–3818. [CrossRef] [PubMed]
-
(2011)
J. Agric. Food Chem
, vol.59
, pp. 3812-3818
-
-
Yao, J.1
Fan, X.J.2
Lu, Y.3
Liu, Y.H.4
-
132
-
-
78650649174
-
Prospecting metagenomic enzyme subfamily genes for DNA family shuffling by a novel PCR-based approach
-
[CrossRef] [PubMed]
-
Wang, Q.; Wu, H.; Wang, A.; Du, P.; Pei, X.; Li, H.; Yin, X.; Huang, L.; Xiong, X. Prospecting metagenomic enzyme subfamily genes for DNA family shuffling by a novel PCR-based approach. J. Biol. Chem. 2010, 285, 41509–41516. [CrossRef] [PubMed]
-
(2010)
J. Biol. Chem
, vol.285
, pp. 41509-41516
-
-
Wang, Q.1
Wu, H.2
Wang, A.3
Du, P.4
Pei, X.5
Li, H.6
Yin, X.7
Huang, L.8
Xiong, X.9
-
133
-
-
77955848869
-
Novel metagenome-derived _-galactosidase: Gene cloning, overexpression, purification and characterization
-
[CrossRef] [PubMed]
-
Wang, K.; Li, G.; Yu, S.Q.; Zhang, C.T.; Liu, Y.H. A novel metagenome-derived _-galactosidase: Gene cloning, overexpression, purification and characterization. Appl. Microbiol. Biotechnol. 2010, 88, 155–165. [CrossRef] [PubMed]
-
(2010)
Appl. Microbiol. Biotechnol
, vol.88
, pp. 155-165
-
-
Wang, K.1
Li, G.2
Yu, S.Q.3
Zhang, C.T.4
Liu, Y.5
-
134
-
-
35048880555
-
Natural products from isnA-containing biosynthetic gene clusters recovered from the genomes of cultured and uncultured bacteria
-
[CrossRef] [PubMed]
-
Brady, S.F.; Bauer, J.D.; Clarke-Pearson, M.F.; Daniels, R. Natural products from isnA-containing biosynthetic gene clusters recovered from the genomes of cultured and uncultured bacteria. J. Am. Chem. Soc. 2007, 129, 12102–12103. [CrossRef] [PubMed]
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 12102-12103
-
-
Brady, S.F.1
Bauer, J.D.2
Clarke-Pearson, M.F.3
Daniels, R.4
-
135
-
-
84929353102
-
Targeted metagenomics: Finding rare tryptophan dimer natural products in the environment
-
[CrossRef] [PubMed]
-
Chang, F.-Y.; Ternei, M.A.; Calle, P.Y.; Brady, S.F. Targeted metagenomics: Finding rare tryptophan dimer natural products in the environment. J. Am. Chem. Soc. 2015, 137, 6044–6052. [CrossRef] [PubMed]
-
(2015)
J. Am. Chem. Soc
, vol.137
, pp. 6044-6052
-
-
Chang, F.-Y.1
Ternei, M.A.2
Calle, P.Y.3
Brady, S.F.4
-
136
-
-
84885467685
-
Improving clinically relevant families of natural products through sequence-guided screening of soil metagenomes
-
[CrossRef] [PubMed]
-
Kang, H.-S.; Brady, S.F. Arimetamycin A: Improving clinically relevant families of natural products through sequence-guided screening of soil metagenomes. Angew. Chem. Int. Ed. 2013, 52, 11063–11067. [CrossRef] [PubMed]
-
(2013)
Angew. Chem. Int. Ed
, vol.52
, pp. 11063-11067
-
-
Kang, H.-S.1
Brady, S.F.2
Arimetamycin, A.3
-
137
-
-
84870714378
-
An MRSA-active antibiotic identified through induced expression of environmental DNA gene clusters
-
[CrossRef] [PubMed]
-
Kallifidas, D.; Kang, H.-S.; Brady, S.F. Tetarimycin A, an MRSA-active antibiotic identified through induced expression of environmental DNA gene clusters. J. Am. Chem. Soc. 2012, 134, 19552–19555. [CrossRef] [PubMed]
-
(2012)
J. Am. Chem. Soc
, vol.134
, pp. 19552-19555
-
-
Kallifidas, D.1
Kang, H.-S.2
Brady, S.F.3
Tetarimycin, A.4
-
138
-
-
85041902998
-
Culture-independent discovery of the malacidins as calcium-dependent antibiotics with activity against multidrug-resistant Gram-positive pathogens
-
[CrossRef] [PubMed]
-
Hover, B.M.; Kim, S.-H.; Katz, M.; Charlop-Powers, Z.; Owen, J.G.; Ternei, M.A.; Maniko, J.; Estrela, A.B.; Molina, H.; Park, S.; et al. Culture-independent discovery of the malacidins as calcium-dependent antibiotics with activity against multidrug-resistant Gram-positive pathogens. Nat. Microbiol. 2018, 3, 415–422. [CrossRef] [PubMed]
-
(2018)
Nat. Microbiol
, vol.3
, pp. 415-422
-
-
Hover, B.M.1
Kim, S.-H.2
Katz, M.3
Charlop-Powers, Z.4
Owen, J.G.5
Ternei, M.A.6
Maniko, J.7
Estrela, A.B.8
Molina, H.9
Park, S.10
-
139
-
-
85042167325
-
Rational engineering of Streptomyces albus J1074 for the overexpression of secondary metabolite gene clusters
-
[CrossRef] [PubMed]
-
Kallifidas, D.; Jiang, G.; Ding, Y.; Luesch, H. Rational engineering of Streptomyces albus J1074 for the overexpression of secondary metabolite gene clusters. Microb. Cell Fact. 2018, 17. [CrossRef] [PubMed]
-
(2018)
Microb. Cell Fact
, pp. 17
-
-
Kallifidas, D.1
Jiang, G.2
Ding, Y.3
Luesch, H.4
-
140
-
-
84877143960
-
Screening and expression of genes from metagenomes
-
[PubMed]
-
Leis, B.; Angelov, A.; Liebl, W. Screening and expression of genes from metagenomes. Adv. Appl. Microbiol. 2013, 83, 1–68. [PubMed]
-
(2013)
Adv. Appl. Microbiol
, vol.83
, pp. 1-68
-
-
Leis, B.1
Angelov, A.2
Liebl, W.3
-
141
-
-
80052498659
-
Marine natural products: A new wave of drugs?
-
[CrossRef] [PubMed]
-
Montaser, R.; Luesch, H. Marine natural products: A new wave of drugs? Future Med. Chem. 2011, 3, 1475–1489. [CrossRef] [PubMed]
-
(2011)
Future Med. Chem
, vol.3
, pp. 1475-1489
-
-
Montaser, R.1
Luesch, H.2
-
142
-
-
9144222006
-
Proteomics-based target identification—Bengamides as a new class of methionine aminopeptidase inhibitors
-
[CrossRef] [PubMed]
-
Towbin, H.; Bair, K.W.; DeCaprio, J.A.; Eck, M.J.; Kim, S.; Kinder, F.R.; Morollo, A.; Mueller, D.R.; Schindler, P.; Song, H.K.; et al. Proteomics-based target identification—Bengamides as a new class of methionine aminopeptidase inhibitors. J. Biol. Chem. 2003, 278, 52964–52971. [CrossRef] [PubMed]
-
(2003)
J. Biol. Chem
, vol.278
, pp. 52964-52971
-
-
Towbin, H.1
Bair, K.W.2
Decaprio, J.A.3
Eck, M.J.4
Kim, S.5
Kinder, F.R.6
Morollo, A.7
Mueller, D.R.8
Schindler, P.9
Song, H.K.10
-
143
-
-
84955172598
-
Production of the bengamide class of marine natural products in myxobacteria: Biosynthesis and structure-activity relationships
-
[CrossRef] [PubMed]
-
Wenzel, S.C.; Hoffmann, H.; Zhang, J.; Debussche, L.; Haag-Richter, S.; Kurz, M.; Nardi, F.; Lukat, P.; Kochems, I.; Tietgen, H.; et al. Production of the bengamide class of marine natural products in myxobacteria: Biosynthesis and structure-activity relationships. Angew. Chem. Int. Ed. Engl. 2015, 54, 15560–15564. [CrossRef] [PubMed]
-
(2015)
Angew. Chem. Int. Ed. Engl
, vol.54
, pp. 15560-15564
-
-
Wenzel, S.C.1
Hoffmann, H.2
Zhang, J.3
Debussche, L.4
Haag-Richter, S.5
Kurz, M.6
Nardi, F.7
Lukat, P.8
Kochems, I.9
Tietgen, H.10
-
144
-
-
0022979685
-
Bengamides, heterocyclic anthelmintics from a Jaspidae marine sponge
-
[CrossRef]
-
Quinoa, E.; Adamczeski, M.; Crews, P.; Bakus, G.J. Bengamides, heterocyclic anthelmintics from a Jaspidae marine sponge. J. Org. Chem. 1986, 51, 4494–4497. [CrossRef]
-
(1986)
J. Org. Chem
, vol.51
, pp. 4494-4497
-
-
Quinoa, E.1
Adamczeski, M.2
Crews, P.3
Bakus, G.J.4
-
145
-
-
61449113023
-
Metabolites from symbiotic bacteria
-
[CrossRef] [PubMed]
-
Piel, J. Metabolites from symbiotic bacteria. Nat. Prod. Rep. 2009, 26, 338–362. [CrossRef] [PubMed]
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 338-362
-
-
Piel, J.1
-
146
-
-
0028128310
-
Microsclerodermins A and B. Antifungal cyclic peptides from the lithistid sponge Microscleroderma sp
-
[CrossRef]
-
Bewley, C.A.; Debitus, C.; Faulkner, D.J. Microsclerodermins A and B. Antifungal cyclic peptides from the lithistid sponge Microscleroderma sp. J. Am. Chem. Soc. 1994, 116, 7631–7636. [CrossRef]
-
(1994)
J. Am. Chem. Soc
, vol.116
, pp. 7631-7636
-
-
Bewley, C.A.1
Debitus, C.2
Faulkner, D.J.3
-
147
-
-
0032568379
-
Microsclerodermins C–E, antifungal cyclic peptides from the lithistid marine sponges Theonella sp. And Microscleroderma sp
-
[CrossRef]
-
Schmidt, E.W.; Faulkner, D.J. Microsclerodermins C–E, antifungal cyclic peptides from the lithistid marine sponges Theonella sp. and Microscleroderma sp. Tetrahedron 1998, 54, 3043–3056. [CrossRef]
-
(1998)
Tetrahedron
, vol.54
, pp. 3043-3056
-
-
Schmidt, E.W.1
Faulkner, D.J.2
-
148
-
-
84887646875
-
Microsclerodermins from terrestrial myxobacteria: An intriguing biosynthesis likely connected to a sponge symbiont
-
[CrossRef] [PubMed]
-
Hoffmann, T.; Müller, S.; Nadmid, S.; Garcia, R.; Müller, R. Microsclerodermins from terrestrial myxobacteria: An intriguing biosynthesis likely connected to a sponge symbiont. J. Am. Chem. Soc. 2013, 45, 16904–16911. [CrossRef] [PubMed]
-
(2013)
J. Am. Chem. Soc
, vol.45
, pp. 16904-16911
-
-
Hoffmann, T.1
Müller, S.2
Nadmid, S.3
Garcia, R.4
Müller, R.5
-
149
-
-
84856569941
-
Sponge-specific clusters revisited: A comprehensive phylogeny of sponge-associated microorganisms
-
[CrossRef] [PubMed]
-
Simister, R.L.; Deines, P.; Botté, E.S.; Webster, N.S.; Taylor, M.W. Sponge-specific clusters revisited: A comprehensive phylogeny of sponge-associated microorganisms. Environ. Microbiol. 2012, 14, 517–524. [CrossRef] [PubMed]
-
(2012)
Environ. Microbiol
, vol.14
, pp. 517-524
-
-
Simister, R.L.1
Deines, P.2
Botté, E.S.3
Webster, N.S.4
Taylor, M.W.5
-
150
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
[PubMed]
-
Amann, R.I.; Ludwig, W.; Schleifer, K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 1995, 59, 143–169. [PubMed]
-
(1995)
Microbiol. Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
151
-
-
11844280935
-
Polytheonamides A and B, highly cytotoxic, linear polypeptides with unprecedented structural features, from the marine sponge, Theonella swinhoei
-
[CrossRef] [PubMed]
-
Hamada, T.; Matsunaga, S.; Yano, G.; Fusetani, N. Polytheonamides A and B, highly cytotoxic, linear polypeptides with unprecedented structural features, from the marine sponge, Theonella swinhoei. J. Am. Chem. Soc. 2005, 127, 110–118. [CrossRef] [PubMed]
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 110-118
-
-
Hamada, T.1
Matsunaga, S.2
Yano, G.3
Fusetani, N.4
-
152
-
-
77950283409
-
Total synthesis of the large non-ribosomal peptide polytheonamide B
-
[CrossRef] [PubMed]
-
Inoue, M.; Shinohara, N.; Tanabe, S.; Takahashi, T.; Okura, K.; Itoh, H.; Mizoguchi, Y.; Iida, M.; Lee, N.; Matsuoka, S. Total synthesis of the large non-ribosomal peptide polytheonamide B. Nat. Chem. 2010, 2, 280–285. [CrossRef] [PubMed]
-
(2010)
Nat. Chem
, vol.2
, pp. 280-285
-
-
Inoue, M.1
Shinohara, N.2
Tanabe, S.3
Takahashi, T.4
Okura, K.5
Itoh, H.6
Mizoguchi, Y.7
Iida, M.8
Lee, N.9
Matsuoka, S.10
-
153
-
-
85027943237
-
Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides
-
[CrossRef] [PubMed]
-
Freeman, M.F.; Gurgui, C.; Helf, M.J.; Morinaka, B.I.; Uria, A.R.; Oldham, N.J.; Sahl, H.-G.; Matsunaga, S.; Piel, J. Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides. Science 2012, 338, 387–390. [CrossRef] [PubMed]
-
(2012)
Science
, vol.338
, pp. 387-390
-
-
Freeman, M.F.1
Gurgui, C.2
Helf, M.J.3
Morinaka, B.I.4
Uria, A.R.5
Oldham, N.J.6
Sahl, H.-G.7
Matsunaga, S.8
Piel, J.9
-
154
-
-
85016293162
-
Seven enzymes create extraordinary molecular complexity in an uncultivated bacterium
-
[CrossRef] [PubMed]
-
Freeman, M.F.; Helf, M.J.; Bhushan, A.; Morinaka, B.I.; Piel, J. Seven enzymes create extraordinary molecular complexity in an uncultivated bacterium. Nat. Chem. 2017, 9, 387–395. [CrossRef] [PubMed]
-
(2017)
Nat. Chem
, vol.9
, pp. 387-395
-
-
Freeman, M.F.1
Helf, M.J.2
Bhushan, A.3
Morinaka, B.I.4
Piel, J.5
-
155
-
-
84893542053
-
An environmental bacterial taxon with a large and distinct metabolic repertoire
-
[CrossRef] [PubMed]
-
Wilson, M.C.; Mori, T.; Rückert, C.; Uria, A.R.; Helf, M.J.; Takada, K.; Gernert, C.; Steffens, U.A.E.; Heycke, N.; Schmitt, S.; et al. An environmental bacterial taxon with a large and distinct metabolic repertoire. Nature 2014, 506. [CrossRef] [PubMed]
-
(2014)
Nature
, pp. 506
-
-
Wilson, M.C.1
Mori, T.2
Rückert, C.3
Uria, A.R.4
Helf, M.J.5
Takada, K.6
Gernert, C.7
Steffens, U.A.E.8
Heycke, N.9
Schmitt, S.10
-
156
-
-
0022551475
-
Bioactive marine metabolites. Part 16. Calyculin A. A novel antitumor metabolite from the marine sponge Discodermia calyx
-
[CrossRef]
-
Kato, Y.; Fusetani, N.; Matsunaga, S.; Hashimoto, K.; Fujita, S.; Furuya, T. Bioactive marine metabolites. Part 16. Calyculin A. A novel antitumor metabolite from the marine sponge Discodermia calyx. J. Am. Chem. Soc. 1986, 108, 2780–2781. [CrossRef]
-
(1986)
J. Am. Chem. Soc
, vol.108
, pp. 2780-2781
-
-
Kato, Y.1
Fusetani, N.2
Matsunaga, S.3
Hashimoto, K.4
Fujita, S.5
Furuya, T.6
-
157
-
-
0036688479
-
A new highly active calyculin derivative from the marine sponge Theonella swinhoei
-
[CrossRef] [PubMed]
-
Edrada, R.A.; Ebel, R.; Supriyono, A.; Wray, V.; Schupp, P.; Steube, K.; van Soest, R.; Proksch, P. Swinhoeiamide A, a new highly active calyculin derivative from the marine sponge Theonella swinhoei. J. Nat. Prod. 2002, 65, 1168–1172. [CrossRef] [PubMed]
-
(2002)
J. Nat. Prod
, vol.65
, pp. 1168-1172
-
-
Edrada, R.A.1
Ebel, R.2
Supriyono, A.3
Wray, V.4
Schupp, P.5
Steube, K.6
Van Soest, R.7
Proksch, P.8
Swinhoeiamide, A.9
-
158
-
-
33846412600
-
Rapid isolation of rare clones from highly complex DNA libraries by PCR analysis of liquid gel pools
-
[CrossRef] [PubMed]
-
Hrvatin, S.; Piel, J. Rapid isolation of rare clones from highly complex DNA libraries by PCR analysis of liquid gel pools. J. Microbiol. Methods 2007, 68, 434–436. [CrossRef] [PubMed]
-
(2007)
J. Microbiol. Methods
, vol.68
, pp. 434-436
-
-
Hrvatin, S.1
Piel, J.2
-
159
-
-
84904641324
-
Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont
-
[CrossRef] [PubMed]
-
Wakimoto, T.; Egami, Y.; Nakashima, Y.; Wakimoto, Y.; Mori, T.; Awakawa, T.; Ito, T.; Kenmoku, H.; Asakawa, Y.; Piel, J.; et al. Calyculin biogenesis from a pyrophosphate protoxin produced by a sponge symbiont. Nat. Chem. Biol. 2014, 10. [CrossRef] [PubMed]
-
(2014)
Nat. Chem. Biol
, pp. 10
-
-
Wakimoto, T.1
Egami, Y.2
Nakashima, Y.3
Wakimoto, Y.4
Mori, T.5
Awakawa, T.6
Ito, T.7
Kenmoku, H.8
Asakawa, Y.9
-
160
-
-
85017930087
-
Mechanistic understanding of lanthipeptide biosynthetic enzymes
-
[CrossRef] [PubMed]
-
Repka, L.M.; Chekan, J.R.; Nair, S.K.; Van Der Donk, W.A. Mechanistic understanding of lanthipeptide biosynthetic enzymes. Chem. Rev. 2017, 117, 5457–5520. [CrossRef] [PubMed]
-
(2017)
Chem. Rev
, vol.117
, pp. 5457-5520
-
-
Repka, L.M.1
Chekan, J.R.2
Nair, S.K.3
Van Der Donk, W.A.4
-
161
-
-
85040764392
-
Accessing chemical diversity from the uncultivated symbionts of small marine animals
-
[CrossRef] [PubMed]
-
Smith, T.E.; Pond, C.D.; Pierce, E.; Harmer, Z.P.; Kwan, J.; Zachariah, M.M.; Harper, M.K.; Wyche, T.P.; Matainaho, T.K.; Bugni, T.S.; et al. Accessing chemical diversity from the uncultivated symbionts of small marine animals. Nat. Chem. Biol. 2018, 14. [CrossRef] [PubMed]
-
(2018)
Nat. Chem. Biol
, pp. 14
-
-
Smith, T.E.1
Pond, C.D.2
Pierce, E.3
Harmer, Z.P.4
Kwan, J.5
Zachariah, M.M.6
Harper, M.K.7
Wyche, T.P.8
Matainaho, T.K.9
Bugni, T.S.10
-
162
-
-
34247279292
-
Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes
-
[CrossRef] [PubMed]
-
Minowa, Y.; Araki, M.; Kanehisa, M. Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes. J. Mol. Biol. 2007, 368, 1500–1517. [CrossRef] [PubMed]
-
(2007)
J. Mol. Biol
, vol.368
, pp. 1500-1517
-
-
Minowa, Y.1
Araki, M.2
Kanehisa, M.3
-
163
-
-
84958606331
-
Single-cell genome sequencing: Current state of the science
-
[CrossRef] [PubMed]
-
Gawad, C.; Koh, W.; Quake, S.R. Single-cell genome sequencing: Current state of the science. Nat. Rev. Genet. 2016, 17. [CrossRef] [PubMed]
-
(2016)
Nat. Rev. Genet
, pp. 17
-
-
Gawad, C.1
Koh, W.2
Quake, S.R.3
-
164
-
-
85031823683
-
Actinomycetes: Still a source of novel antibiotics
-
[CrossRef] [PubMed]
-
Genilloud, O. Actinomycetes: Still a source of novel antibiotics. Nat. Prod. Rep. 2017, 34, 1203–1232. [CrossRef] [PubMed]
-
(2017)
Nat. Prod. Rep
, vol.34
, pp. 1203-1232
-
-
Genilloud, O.1
-
165
-
-
85012065363
-
Natural products from myxobacteria: Novel metabolites and bioactivities
-
[CrossRef] [PubMed]
-
Herrmann, J.; Fayad, A.A.; Müller, R. Natural products from myxobacteria: Novel metabolites and bioactivities. Nat. Prod. Rep. 2017, 34, 135–160. [CrossRef] [PubMed]
-
(2017)
Nat. Prod. Rep
, vol.34
, pp. 135-160
-
-
Herrmann, J.1
Fayad, A.A.2
Müller, R.3
-
166
-
-
84964354517
-
Next generation sequencing of Actinobacteria for the discovery of novel natural products
-
[CrossRef] [PubMed]
-
Gomez-Escribano, J.P.; Alt, S.; Bibb, M.J. Next generation sequencing of Actinobacteria for the discovery of novel natural products. Mar. Drugs 2016, 14. [CrossRef] [PubMed]
-
(2016)
Mar. Drugs
, pp. 14
-
-
Gomez-Escribano, J.P.1
Alt, S.2
Bibb, M.J.3
-
167
-
-
79954503621
-
Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage
-
[CrossRef] [PubMed]
-
Grindberg, R.V.; Ishoey, T.; Brinza, D.; Esquenazi, E.; Coates, R.C.; Liu, W.-T.; Gerwick, L.; Dorrestein, P.C.; Pevzner, P.; Lasken, R.; et al. Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage. PLoS ONE 2011, 6, e18565. [CrossRef] [PubMed]
-
(2011)
Plos ONE
, vol.6
-
-
Grindberg, R.V.1
Ishoey, T.2
Brinza, D.3
Esquenazi, E.4
Coates, R.C.5
Liu, W.-T.6
Gerwick, L.7
Dorrestein, P.C.8
Pevzner, P.9
Lasken, R.10
-
168
-
-
84865318505
-
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
-
[CrossRef] [PubMed]
-
Mason, O.U.; Hazen, T.C.; Borglin, S.; Chain, P.S.G.; Dubinsky, E.A.; Fortney, J.L.; Han, J.; Holman, H.-Y.N.; Hultman, J.; Lamendella, R.; et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J. 2012, 6, 1715–1727. [CrossRef] [PubMed]
-
(2012)
ISME J
, vol.6
, pp. 1715-1727
-
-
Mason, O.U.1
Hazen, T.C.2
Borglin, S.3
Chain, P.S.G.4
Dubinsky, E.A.5
Fortney, J.L.6
Han, J.7
Holman, H.-Y.N.8
Hultman, J.9
Lamendella, R.10
-
169
-
-
83955165353
-
Nonlinear electrophoresis for purification of soil DNA for metagenomics
-
[CrossRef] [PubMed]
-
Engel, K.; Pinnell, L.; Cheng, J.; Charles, T.C.; Neufeld, J.D. Nonlinear electrophoresis for purification of soil DNA for metagenomics. J. Microbiol. Methods 2012, 88, 35–40. [CrossRef] [PubMed]
-
(2012)
J. Microbiol. Methods
, vol.88
, pp. 35-40
-
-
Engel, K.1
Pinnell, L.2
Cheng, J.3
Charles, T.C.4
Neufeld, J.D.5
-
170
-
-
70349290634
-
Nonlinear electrophoretic response yields a unique parameter for separation of biomolecules
-
[CrossRef] [PubMed]
-
Pel, J.; Broemeling, D.; Mai, L.; Poon, H.-L.; Tropini, G.; Warren, R.L.; Holt, R.A.; Marziali, A. Nonlinear electrophoretic response yields a unique parameter for separation of biomolecules. Proc. Natl. Acad. Sci. USA 2009, 106, 14796–14801. [CrossRef] [PubMed]
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 14796-14801
-
-
Pel, J.1
Broemeling, D.2
Mai, L.3
Poon, H.-L.4
Tropini, G.5
Warren, R.L.6
Holt, R.A.7
Marziali, A.8
-
171
-
-
44249127260
-
Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms
-
[CrossRef] [PubMed]
-
Liles, M.R.; Williamson, L.L.; Rodbumrer, J.; Torsvik, V.; Goodman, R.M.; Handelsman, J. Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms. Appl. Environ. Microbiol. 2008, 74, 3302–3305. [CrossRef] [PubMed]
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 3302-3305
-
-
Liles, M.R.1
Williamson, L.L.2
Rodbumrer, J.3
Torsvik, V.4
Goodman, R.M.5
Handelsman, J.6
-
172
-
-
84869998312
-
Current opportunities and challenges in microbial metagenome analysis—A bioinformatic perspective
-
[CrossRef] [PubMed]
-
Teeling, H.; Glöckner, F.O. Current opportunities and challenges in microbial metagenome analysis—A bioinformatic perspective. Brief. Bioinform. 2012, 13, 728–742. [CrossRef] [PubMed]
-
(2012)
Brief. Bioinform
, vol.13
, pp. 728-742
-
-
Teeling, H.1
Glöckner, F.O.2
-
173
-
-
0021014992
-
New channel-forming antibiotic from Streptomyces coelicolor A3(2) which requires calcium for its activity
-
[CrossRef] [PubMed]
-
Lakey, J.H.; Lea, E.J.; Rudd, B.A.; Wright, H.M.; Hopwood, D.A. A new channel-forming antibiotic from Streptomyces coelicolor A3(2) which requires calcium for its activity. J. Gen. Microbiol. 1983, 129, 3565–3573. [CrossRef] [PubMed]
-
(1983)
J. Gen. Microbiol
, vol.129
, pp. 3565-3573
-
-
Lakey, J.H.1
Lea, E.J.2
Rudd, B.A.3
Wright, H.M.4
Hopwood, D.5
-
174
-
-
0019165631
-
Pigmented mycelial antibiotic in Streptomyces coelicolor: Control by a chromosomal gene cluster
-
[CrossRef] [PubMed]
-
Rudd, B.A.; Hopwood, D.A. A pigmented mycelial antibiotic in Streptomyces coelicolor: Control by a chromosomal gene cluster. J. Gen. Microbiol. 1980, 119, 333–340. [CrossRef] [PubMed]
-
(1980)
J. Gen. Microbiol
, vol.119
, pp. 333-340
-
-
Rudd, B.A.1
Hopwood, D.2
-
175
-
-
0021913058
-
Identification of a red pigment from Streptomyces coelicolor A3(2) as a mixture of prodigiosin derivatives
-
[CrossRef] [PubMed]
-
Tsao, S.-W.; Rudd, B.A.M.; He, X.-G.; Chang, C.-J.; Floss, H.G. Identification of a red pigment from Streptomyces coelicolor A3(2) as a mixture of prodigiosin derivatives. J. Antibiot. 1985, 38, 128–131. [CrossRef] [PubMed]
-
(1985)
J. Antibiot
, vol.38
, pp. 128-131
-
-
Tsao, S.-W.1
Rudd, B.A.M.2
He, X.-G.3
Chang, C.-J.4
Floss, H.G.5
-
176
-
-
0017193382
-
Actinorhodin is a chromosomally-determined antibiotic in Streptomyces coelicolor A3(2)
-
[CrossRef] [PubMed]
-
Wright, L.F.; Hopwood, D.A. Actinorhodin is a chromosomally-determined antibiotic in Streptomyces coelicolor A3(2). J. Gen. Microbiol. 1976, 96, 289–297. [CrossRef] [PubMed]
-
(1976)
J. Gen. Microbiol
, vol.96
, pp. 289-297
-
-
Wright, L.F.1
Hopwood, D.A.2
-
177
-
-
79959920872
-
AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
[CrossRef] [PubMed]
-
Medema, M.H.; Blin, K.; Cimermancic, P.; de Jager, V.; Zakrzewski, P.; Fischbach, M.A.; Weber, T.; Takano, E.; Breitling, R. antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 2011, 39, W339–W346. [CrossRef] [PubMed]
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W339-W346
-
-
Medema, M.H.1
Blin, K.2
Cimermancic, P.3
De Jager, V.4
Zakrzewski, P.5
Fischbach, M.A.6
Weber, T.7
Takano, E.8
Breitling, R.9
-
178
-
-
84895873870
-
Improved lanthipeptide detection and prediction for antiSMASH
-
[CrossRef] [PubMed]
-
Blin, K.; Kazempour, D.; Wohlleben, W.; Weber, T. Improved lanthipeptide detection and prediction for antiSMASH. PLoS ONE 2014, 9, e89420. [CrossRef] [PubMed]
-
(2014)
Plos ONE
, vol.9
-
-
Blin, K.1
Kazempour, D.2
Wohlleben, W.3
Weber, T.4
-
179
-
-
79959936207
-
NRPSpredictor2—A web server for predicting NRPS adenylation domain specificity
-
[CrossRef] [PubMed]
-
Röttig, M.; Medema, M.H.; Blin, K.; Weber, T.; Rausch, C.; Kohlbacher, O. NRPSpredictor2—A web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 2011, 39, W362–W367. [CrossRef] [PubMed]
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W362-W367
-
-
Röttig, M.1
Medema, M.H.2
Blin, K.3
Weber, T.4
Rausch, C.5
Kohlbacher, O.6
-
180
-
-
0033179468
-
The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
-
[CrossRef]
-
Stachelhaus, T.; Mootz, H.D.; Marahiel, M.A. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. Chem. Biol. 1999, 6, 493–505. [CrossRef]
-
(1999)
Chem. Biol
, vol.6
, pp. 493-505
-
-
Stachelhaus, T.1
Mootz, H.D.2
Marahiel, M.A.3
-
181
-
-
0037466331
-
Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases
-
[CrossRef]
-
Yadav, G.; Gokhale, R.S.; Mohanty, D. Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases. J. Mol. Biol. 2003, 328, 335–363. [CrossRef]
-
(2003)
J. Mol. Biol
, vol.328
, pp. 335-363
-
-
Yadav, G.1
Gokhale, R.S.2
Mohanty, D.3
-
182
-
-
84952673564
-
Dereplication, sequencing and identification of peptidic natural products: From genome mining to peptidogenomics to spectral networks
-
[CrossRef] [PubMed]
-
Mohimani, H.; Pevzner, P.A. Dereplication, sequencing and identification of peptidic natural products: From genome mining to peptidogenomics to spectral networks. Nat. Prod. Rep. 2016, 33, 73–86. [CrossRef] [PubMed]
-
(2016)
Nat. Prod. Rep
, vol.33
, pp. 73-86
-
-
Mohimani, H.1
Pevzner, P.A.2
-
183
-
-
84906678559
-
NRPquest: Coupling mass spectrometry and genome mining for nonribosomal peptide discovery
-
[CrossRef] [PubMed]
-
Mohimani, H.; Liu, W.-T.; Kersten, R.D.; Moore, B.S.; Dorrestein, P.C.; Pevzner, P.A. NRPquest: Coupling mass spectrometry and genome mining for nonribosomal peptide discovery. J. Nat. Prod. 2014, 77, 1902–1909. [CrossRef] [PubMed]
-
(2014)
J. Nat. Prod
, vol.77
, pp. 1902-1909
-
-
Mohimani, H.1
Liu, W.-T.2
Kersten, R.D.3
Moore, B.S.4
Dorrestein, P.C.5
Pevzner, P.A.6
-
184
-
-
85023161576
-
PRISM 3: Expanded prediction of natural product chemical structures from microbial genomes
-
[CrossRef] [PubMed]
-
Skinnider, M.A.; Merwin, N.J.; Johnston, C.W.; Magarvey, N.A. PRISM 3: Expanded prediction of natural product chemical structures from microbial genomes. Nucleic Acids Res. 2017, 45, W49–W54. [CrossRef] [PubMed]
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W49-W54
-
-
Skinnider, M.A.1
Merwin, N.J.2
Johnston, C.W.3
Magarvey, N.A.4
-
185
-
-
84949999706
-
Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)
-
[CrossRef] [PubMed]
-
Skinnider, M.A.; Dejong, C.A.; Rees, P.N.; Johnston, C.W.; Li, H.; Webster, A.L.H.; Wyatt, M.A.; Magarvey, N.A. Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM). Nucleic Acids Res. 2015, 43, 9645–9662. [CrossRef] [PubMed]
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 9645-9662
-
-
Skinnider, M.A.1
Dejong, C.A.2
Rees, P.N.3
Johnston, C.W.4
Li, H.5
Webster, A.L.H.6
Wyatt, M.A.7
Magarvey, N.A.8
-
186
-
-
85023202714
-
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery
-
[CrossRef] [PubMed]
-
Alanjary, M.; Kronmiller, B.; Adamek, M.; Blin, K.; Weber, T.; Huson, D.; Philmus, B.; Ziemert, N. The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery. Nucleic Acids Res. 2017, 45, W42–W48. [CrossRef] [PubMed]
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W42-W48
-
-
Alanjary, M.1
Kronmiller, B.2
Adamek, M.3
Blin, K.4
Weber, T.5
Huson, D.6
Philmus, B.7
Ziemert, N.8
-
187
-
-
0026342866
-
Characterization of an oxytetracycline-resistance gene, otrA, of Streptomyces rimosus
-
[CrossRef] [PubMed]
-
Doyle, D.; McDowall, K.J.; Butler, M.J.; Hunter, I.S. Characterization of an oxytetracycline-resistance gene, otrA, of Streptomyces rimosus. Mol. Microbiol. 1991, 5, 2923–2933. [CrossRef] [PubMed]
-
(1991)
Mol. Microbiol
, vol.5
, pp. 2923-2933
-
-
Doyle, D.1
McDowall, K.J.2
Butler, M.J.3
Hunter, I.S.4
-
188
-
-
84930647575
-
Targeting DnaN for tuberculosis therapy using novel griselimycins
-
[CrossRef] [PubMed]
-
Kling, A.; Lukat, P.; Almeida, D.V.; Bauer, A.; Fontaine, E.; Sordello, S.; Zaburannyi, N.; Herrmann, J.; Wenzel, S.C.; König, C.; et al. Targeting DnaN for tuberculosis therapy using novel griselimycins. Science 2015, 348, 1106–1112. [CrossRef] [PubMed]
-
(2015)
Science
, vol.348
, pp. 1106-1112
-
-
Kling, A.1
Lukat, P.2
Almeida, D.V.3
Bauer, A.4
Fontaine, E.5
Sordello, S.6
Zaburannyi, N.7
Herrmann, J.8
Wenzel, S.C.9
König, C.10
-
190
-
-
85035093145
-
Pentangular polyphenols produced by Amycolatopsis mediterranei S699DrifA
-
[CrossRef] [PubMed]
-
Li, X.; Wu, X.; Zhu, J.; Shen, Y. Amexanthomycins A–J, pentangular polyphenols produced by Amycolatopsis mediterranei S699DrifA. Appl. Microbiol. Biotechnol. 2018, 102, 689–702. [CrossRef] [PubMed]
-
(2018)
Appl. Microbiol. Biotechnol
, vol.102
, pp. 689-702
-
-
Li, X.1
Wu, X.2
Zhu, J.3
Shen, Y.4
Amexanthomycins, A.J.5
-
191
-
-
84893470138
-
Actinomycetes biosynthetic potential: How to bridge in silico and in vivo?
-
[CrossRef] [PubMed]
-
Rebets, Y.; Brötz, E.; Tokovenko, B.; Luzhetskyy, A. Actinomycetes biosynthetic potential: How to bridge in silico and in vivo? J. Ind. Microbiol. Biotechnol. 2014, 41, 387–402. [CrossRef] [PubMed]
-
(2014)
J. Ind. Microbiol. Biotechnol
, vol.41
, pp. 387-402
-
-
Rebets, Y.1
Brötz, E.2
Tokovenko, B.3
Luzhetskyy, A.4
-
192
-
-
65549083361
-
Strategies for the discovery of new natural products by genome mining
-
[CrossRef] [PubMed]
-
Zerikly, M.; Challis, G.L. Strategies for the discovery of new natural products by genome mining. ChemBioChem 2009, 10, 625–632. [CrossRef] [PubMed]
-
(2009)
Chembiochem
, vol.10
, pp. 625-632
-
-
Zerikly, M.1
Challis, G.L.2
-
193
-
-
85040253654
-
Cracking the regulatory code of biosynthetic gene clusters as a strategy for natural product discovery
-
[CrossRef] [PubMed]
-
Rigali, S.; Anderssen, S.; Naômé, A.; van Wezel, G.P. Cracking the regulatory code of biosynthetic gene clusters as a strategy for natural product discovery. Biochem. Pharmacol. 2018. [CrossRef] [PubMed]
-
(2018)
Biochem. Pharmacol
-
-
Rigali, S.1
Anderssen, S.2
Naômé, A.3
Van Wezel, G.P.4
-
194
-
-
4544352632
-
Partial activation of a silent angucycline-type gene cluster from a rubromycin β producing Streptomyces sp. PGA 64
-
[CrossRef] [PubMed]
-
Metsä-Ketelä, M.; Ylihonko, K.; Mäntsälä, P. Partial activation of a silent angucycline-type gene cluster from a rubromycin β producing Streptomyces sp. PGA 64. J. Antibiot. 2004, 57, 502–510. [CrossRef] [PubMed]
-
(2004)
J. Antibiot
, vol.57
, pp. 502-510
-
-
Metsä-Ketelä, M.1
Ylihonko, K.2
Mäntsälä, P.3
-
195
-
-
79951642419
-
Characterization and manipulation of the pathway-specific late regulator AlpW reveals Streptomyces ambofaciens as a new producer of kinamycins
-
[CrossRef] [PubMed]
-
Bunet, R.; Song, L.; Mendes, M.V.; Corre, C.; Hotel, L.; Rouhier, N.; Framboisier, X.; Leblond, P.; Challis, G.L.; Aigle, B. Characterization and manipulation of the pathway-specific late regulator AlpW reveals Streptomyces ambofaciens as a new producer of kinamycins. J. Bacteriol. 2011, 193, 1142–1153. [CrossRef] [PubMed]
-
(2011)
J. Bacteriol
, vol.193
, pp. 1142-1153
-
-
Bunet, R.1
Song, L.2
Mendes, M.V.3
Corre, C.4
Hotel, L.5
Rouhier, N.6
Framboisier, X.7
Leblond, P.8
Challis, G.L.9
Aigle, B.10
-
196
-
-
84888617134
-
Discovery of a family of -aminobutyrate ureas via rational derepression of a silent bacterial gene cluster
-
[CrossRef]
-
Sidda, J.D.; Song, L.; Poon, V.; Al-Bassam, M.; Lazos, O.; Buttner, M.J.; Challis, G.L.; Corre, C. Discovery of a family of -aminobutyrate ureas via rational derepression of a silent bacterial gene cluster. Chem. Sci. 2013, 5, 86–89. [CrossRef]
-
(2013)
Chem. Sci
, vol.5
, pp. 86-89
-
-
Sidda, J.D.1
Song, L.2
Poon, V.3
Al-Bassam, M.4
Lazos, O.5
Buttner, M.J.6
Challis, G.L.7
Corre, C.8
-
197
-
-
79954997859
-
Identification of a bioactive 51-membered macrolide complex by activation of a silent polyketide synthase in Streptomyces ambofaciens
-
[CrossRef] [PubMed]
-
Laureti, L.; Song, L.J.; Huang, S.; Corre, C.; Leblond, P.; Challis, G.L.; Aigle, B. Identification of a bioactive 51-membered macrolide complex by activation of a silent polyketide synthase in Streptomyces ambofaciens. Proc. Natl. Acad. Sci. USA 2011, 108, 6258–6263. [CrossRef] [PubMed]
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 6258-6263
-
-
Laureti, L.1
Song, L.J.2
Huang, S.3
Corre, C.4
Leblond, P.5
Challis, G.L.6
Aigle, B.7
-
198
-
-
84897952067
-
Activation and identification of five clusters for secondary metabolites in Streptomyces albus J 1074
-
[CrossRef] [PubMed]
-
Olano, C.; García, I.; González, A.; Rodriguez, M.; Rozas, D.; Rubio, J.; Sánchez-Hidalgo, M.; Braña, A.F.; Méndez, C.; Salas, J.A. Activation and identification of five clusters for secondary metabolites in Streptomyces albus J 1074. Microb. Biotechnol. 2014, 7, 242–256. [CrossRef] [PubMed]
-
Microb. Biotechnol
, vol.2014
, Issue.7
, pp. 242-256
-
-
Olano, C.1
García, I.2
González, A.3
Rodriguez, M.4
Rozas, D.5
Rubio, J.6
Sánchez-Hidalgo, M.7
Braña, A.F.8
Méndez, C.9
Salas, J.A.10
-
199
-
-
84928391757
-
Simple “on-demand” production of bioactive natural products
-
[CrossRef] [PubMed]
-
Bode, E.; Brachmann, A.O.; Kegler, C.; Simsek, R.; Dauth, C.; Zhou, Q.; Kaiser, M.; Klemmt, P.; Bode, H.B. Simple “on-demand” production of bioactive natural products. ChemBioChem 2015, 16, 1115–1119. [CrossRef] [PubMed]
-
(2015)
Chembiochem
, vol.16
, pp. 1115-1119
-
-
Bode, E.1
Brachmann, A.O.2
Kegler, C.3
Simsek, R.4
Dauth, C.5
Zhou, Q.6
Kaiser, M.7
Klemmt, P.8
Bode, H.B.9
-
200
-
-
84881257161
-
Design, construction and characterisation of a synthetic promoter library for fine-tuned gene expression in actinomycetes
-
[CrossRef] [PubMed]
-
Siegl, T.; Tokovenko, B.; Myronovskyi, M.; Luzhetskyy, A. Design, construction and characterisation of a synthetic promoter library for fine-tuned gene expression in actinomycetes. Metab. Eng. 2013, 19, 98–106. [CrossRef] [PubMed]
-
(2013)
Metab. Eng
, vol.19
, pp. 98-106
-
-
Siegl, T.1
Tokovenko, B.2
Myronovskyi, M.3
Luzhetskyy, A.4
-
201
-
-
79954939562
-
The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters
-
[CrossRef] [PubMed]
-
Seghezzi, N.; Amar, P.; Koebmann, B.; Jensen, P.R.; Virolle, M.-J. The construction of a library of synthetic promoters revealed some specific features of strong Streptomyces promoters. Appl. Microbiol. Biotechnol. 2011, 90, 615–623. [CrossRef] [PubMed]
-
(2011)
Appl. Microbiol. Biotechnol
, vol.90
, pp. 615-623
-
-
Seghezzi, N.1
Amar, P.2
Koebmann, B.3
Jensen, P.R.4
Virolle, M.-J.5
-
202
-
-
84958101900
-
Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes
-
[CrossRef] [PubMed]
-
Baltz, R.H. Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and other actinomycetes. J. Ind. Microbiol. Biotechnol. 2016, 43, 343–370. [CrossRef] [PubMed]
-
(2016)
J. Ind. Microbiol. Biotechnol
, vol.43
, pp. 343-370
-
-
Baltz, R.H.1
-
203
-
-
84893193186
-
Insights into naturally minimised Streptomyces albus J1074 genome
-
[CrossRef] [PubMed]
-
Zaburannyi, N.; Rabyk, M.; Ostash, B.; Fedorenko, V.; Luzhetskyy, A. Insights into naturally minimised Streptomyces albus J1074 genome. BMC Genom. 2014, 15. [CrossRef] [PubMed]
-
(2014)
BMC Genom
, pp. 15
-
-
Zaburannyi, N.1
Rabyk, M.2
Ostash, B.3
Fedorenko, V.4
Luzhetskyy, A.5
-
204
-
-
79951846247
-
Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters
-
[CrossRef] [PubMed]
-
Gomez-Escribano, J.P.; Bibb, M.J. Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters. Microb. Biotechnol. 2011, 4, 207–215. [CrossRef] [PubMed]
-
(2011)
Microb. Biotechnol
, vol.4
, pp. 207-215
-
-
Gomez-Escribano, J.P.1
Bibb, M.J.2
-
205
-
-
85014812917
-
Antibiotic dialogues: Induction of silent biosynthetic gene clusters by exogenous small molecules
-
[CrossRef] [PubMed]
-
Okada, B.K.; Seyedsayamdost, M.R. Antibiotic dialogues: Induction of silent biosynthetic gene clusters by exogenous small molecules. FEMS Microbiol. Rev. 2017, 41, 19–33. [CrossRef] [PubMed]
-
(2017)
FEMS Microbiol. Rev
, vol.41
, pp. 19-33
-
-
Okada, B.K.1
Seyedsayamdost, M.R.2
-
206
-
-
84937253653
-
Discovery of microbial natural products by activation of silent biosynthetic gene clusters
-
[CrossRef] [PubMed]
-
Rutledge, P.J.; Challis, G.L. Discovery of microbial natural products by activation of silent biosynthetic gene clusters. Nat. Rev. Microbiol. 2015, 13, 509–523. [CrossRef] [PubMed]
-
(2015)
Nat. Rev. Microbiol
, vol.13
, pp. 509-523
-
-
Rutledge, P.J.1
Challis, G.L.2
-
207
-
-
84901000640
-
High-throughput platform for the discovery of elicitors of silent bacterial gene clusters
-
[CrossRef] [PubMed]
-
Seyedsayamdost, M.R. High-throughput platform for the discovery of elicitors of silent bacterial gene clusters. Proc. Natl. Acad. Sci. USA 2014, 111, 7266–7271. [CrossRef] [PubMed]
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 7266-7271
-
-
Seyedsayamdost, M.R.1
-
208
-
-
84973494456
-
Effects of trace metal ions on secondary metabolism and the morphological development of streptomycetes
-
[CrossRef] [PubMed]
-
Locatelli, F.M.; Goo, K.-S.; Ulanova, D. Effects of trace metal ions on secondary metabolism and the morphological development of streptomycetes. Metallomics 2016, 8, 469–480. [CrossRef] [PubMed]
-
(2016)
Metallomics
, vol.8
, pp. 469-480
-
-
Locatelli, F.M.1
Goo, K.-S.2
Ulanova, D.3
-
209
-
-
66149185679
-
Antibacterial discovery in actinomycetes strains with mutations in RNA polymerase or ribosomal protein S12
-
[CrossRef] [PubMed]
-
Hosaka, T.; Ohnishi-Kameyama, M.; Muramatsu, H.; Murakami, K.; Tsurumi, Y.; Kodani, S.; Yoshida, M.; Fujie, A.; Ochi, K. Antibacterial discovery in actinomycetes strains with mutations in RNA polymerase or ribosomal protein S12. Nat. Biotechnol. 2009, 27, 462–464. [CrossRef] [PubMed]
-
(2009)
Nat. Biotechnol
, vol.27
, pp. 462-464
-
-
Hosaka, T.1
Ohnishi-Kameyama, M.2
Muramatsu, H.3
Murakami, K.4
Tsurumi, Y.5
Kodani, S.6
Yoshida, M.7
Fujie, A.8
Ochi, K.9
-
210
-
-
84880008648
-
Activation and products of the cryptic secondary metabolite biosynthetic gene clusters by rifampin resistance (RpoB) mutations in actinomycetes
-
[CrossRef] [PubMed]
-
Tanaka, Y.; Kasahara, K.; Hirose, Y.; Murakami, K.; Kugimiya, R.; Ochi, K. Activation and products of the cryptic secondary metabolite biosynthetic gene clusters by rifampin resistance (rpoB) mutations in actinomycetes. J. Bacteriol. 2013, 195, 2959–2970. [CrossRef] [PubMed]
-
(2013)
J. Bacteriol
, vol.195
, pp. 2959-2970
-
-
Tanaka, Y.1
Kasahara, K.2
Hirose, Y.3
Murakami, K.4
Kugimiya, R.5
Ochi, K.6
-
211
-
-
84872353481
-
New strategies for drug discovery: Activation of silent or weakly expressed microbial gene clusters
-
[CrossRef] [PubMed]
-
Ochi, K.; Hosaka, T. New strategies for drug discovery: Activation of silent or weakly expressed microbial gene clusters. Appl. Microbiol. Biotechnol. 2013, 97, 87–98. [CrossRef] [PubMed]
-
(2013)
Appl. Microbiol. Biotechnol
, vol.97
, pp. 87-98
-
-
Ochi, K.1
Hosaka, T.2
-
212
-
-
0035704064
-
Goadsporin, a chemical substance which promotes secondary metabolism and morphogenesis in streptomycetes. I. Purification and Characterization
-
[CrossRef] [PubMed]
-
Onaka, H.; Tabata, H.; Igarashi, Y.; Sato, Y.; Furumai, T. Goadsporin, a chemical substance which promotes secondary metabolism and morphogenesis in streptomycetes. I. Purification and Characterization. J. Antibiot. 2001, 54, 1036–1044. [CrossRef] [PubMed]
-
(2001)
J. Antibiot
, vol.54
, pp. 1036-1044
-
-
Onaka, H.1
Tabata, H.2
Igarashi, Y.3
Sato, Y.4
Furumai, T.5
-
213
-
-
84944626204
-
A Burkholderia thailandensis acyl-homoserine lactone-independent orphan luxr homolog that activates production of the cytotoxin malleilactone
-
[CrossRef] [PubMed]
-
Truong, T.T.; Seyedsayamdost, M.; Greenberg, E.P.; Chandler, J.R. A Burkholderia thailandensis acyl-homoserine lactone-independent orphan luxr homolog that activates production of the cytotoxin malleilactone. J. Bacteriol. 2015, 197, 3456–3462. [CrossRef] [PubMed]
-
(2015)
J. Bacteriol
, vol.197
, pp. 3456-3462
-
-
Truong, T.T.1
Seyedsayamdost, M.2
Greenberg, E.P.3
Chandler, J.R.4
-
214
-
-
24944502357
-
Desferrioxamine E produced by Streptomyces griseus stimulates growth and development of Streptomyces tanashiensis
-
[CrossRef] [PubMed]
-
Yamanaka, K.; Oikawa, H.; Ogawa, H.O.; Hosono, K.; Shinmachi, F.; Takano, H.; Sakuda, S.; Beppu, T.; Ueda, K. Desferrioxamine E produced by Streptomyces griseus stimulates growth and development of Streptomyces tanashiensis. Microbiology 2005, 151, 2899–2905. [CrossRef] [PubMed]
-
(2005)
Microbiology
, vol.151
, pp. 2899-2905
-
-
Yamanaka, K.1
Oikawa, H.2
Ogawa, H.O.3
Hosono, K.4
Shinmachi, F.5
Takano, H.6
Sakuda, S.7
Beppu, T.8
Ueda, K.9
-
215
-
-
84865477861
-
Chemical perturbation of secondary metabolism demonstrates important links to primary metabolism
-
[CrossRef] [PubMed]
-
Craney, A.; Ozimok, C.; Pimentel-Elardo, S.M.; Capretta, A.; Nodwell, J.R. Chemical perturbation of secondary metabolism demonstrates important links to primary metabolism. Chem. Biol. 2012, 19, 1020–1027. [CrossRef] [PubMed]
-
(2012)
Chem. Biol
, vol.19
, pp. 1020-1027
-
-
Craney, A.1
Ozimok, C.2
Pimentel-Elardo, S.M.3
Capretta, A.4
Nodwell, J.R.5
-
216
-
-
84947910327
-
Activity-independent discovery of secondary metabolites using chemical elicitation and cheminformatic inference
-
[CrossRef] [PubMed]
-
Pimentel-Elardo, S.M.; Sørensen, D.; Ho, L.; Ziko, M.; Bueler, S.A.; Lu, S.; Tao, J.; Moser, A.; Lee, R.; Agard, D. et al. Activity-independent discovery of secondary metabolites using chemical elicitation and cheminformatic inference. ACS Chem. Biol. 2015, 10, 2616–2623. [CrossRef] [PubMed]
-
(2015)
ACS Chem. Biol
, vol.10
, pp. 2616-2623
-
-
Pimentel-Elardo, S.M.1
Sørensen, D.2
Ho, L.3
Ziko, M.4
Bueler, S.A.5
Lu, S.6
Tao, J.7
Moser, A.8
Lee, R.9
Agard, D.10
-
217
-
-
79952790219
-
Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases
-
[CrossRef] [PubMed]
-
Lombardi, P.M.; Angell, H.D.; Whittington, D.A.; Flynn, E.F.; Rajashankar, K.R.; Christianson, D.W. Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases. Biochemistry 2011, 50, 1808–1817. [CrossRef] [PubMed]
-
(2011)
Biochemistry
, vol.50
, pp. 1808-1817
-
-
Lombardi, P.M.1
Angell, H.D.2
Whittington, D.A.3
Flynn, E.F.4
Rajashankar, K.R.5
Christianson, D.W.6
-
218
-
-
84872042007
-
The chromatin code of fungal secondary metabolite gene clusters
-
[CrossRef] [PubMed]
-
Gacek, A.; Strauss, J. The chromatin code of fungal secondary metabolite gene clusters. Appl. Microbiol. Biotechnol. 2012, 95, 1389–1404. [CrossRef] [PubMed]
-
(2012)
Appl. Microbiol. Biotechnol
, vol.95
, pp. 1389-1404
-
-
Gacek, A.1
Strauss, J.2
-
219
-
-
84958123243
-
Natural product discovery: Past, present, and future
-
[CrossRef] [PubMed]
-
Katz, L.; Baltz, R.H. Natural product discovery: Past, present, and future. J. Ind. Microbiol. Biotechnol. 2016, 43, 155–176. [CrossRef] [PubMed]
-
(2016)
J. Ind. Microbiol. Biotechnol
, vol.43
, pp. 155-176
-
-
Katz, L.1
Baltz, R.H.2
-
220
-
-
77952495893
-
Development of novel drugs from marine surface associated microorganisms
-
[CrossRef] [PubMed]
-
Penesyan, A.; Kjelleberg, S.; Egan, S. Development of novel drugs from marine surface associated microorganisms. Mar. Drugs 2010, 8, 438–459. [CrossRef] [PubMed]
-
(2010)
Mar. Drugs
, vol.8
, pp. 438-459
-
-
Penesyan, A.1
Kjelleberg, S.2
Egan, S.3
-
221
-
-
85031801116
-
Genome mining and activation of a silent PKS/NRPS gene cluster direct the production of totopotensamides
-
[CrossRef] [PubMed]
-
Chen, R.; Zhang, Q.; Tan, B.; Zheng, L.; Li, H.; Zhu, Y.; Zhang, C. Genome mining and activation of a silent PKS/NRPS gene cluster direct the production of totopotensamides. Org. Lett. 2017, 19, 5697–5700. [CrossRef] [PubMed]
-
(2017)
Org. Lett
, vol.19
, pp. 5697-5700
-
-
Chen, R.1
Zhang, Q.2
Tan, B.3
Zheng, L.4
Li, H.5
Zhu, Y.6
Zhang, C.7
-
222
-
-
84940398939
-
The Sound of silence: Activating silent biosynthetic gene clusters in marine microorganisms
-
[CrossRef] [PubMed]
-
Reen, F.J.; Romano, S.; Dobson, A.D.W.; O’Gara, F. The Sound of silence: Activating silent biosynthetic gene clusters in marine microorganisms. Mar. Drugs 2015, 13, 4754–4783. [CrossRef] [PubMed]
-
(2015)
Mar. Drugs
, vol.13
, pp. 4754-4783
-
-
Reen, F.J.1
Romano, S.2
Dobson, A.D.W.3
O’Gara, F.4
-
223
-
-
84995684323
-
Discovery of unusual biaryl polyketides by activation of a silent Streptomyces venezuelae biosynthetic gene cluster
-
[CrossRef] [PubMed]
-
Thanapipatsiri, A.; Gomez-Escribano, J.P.; Song, L.; Bibb, M.J.; Al-Bassam, M.; Chandra, G.; Thamchaipenet, A.; Challis, G.L.; Bibb, M.J. Discovery of unusual biaryl polyketides by activation of a silent Streptomyces venezuelae biosynthetic gene cluster. Chem Bio Chem 2016, 17, 2189–2198. [CrossRef] [PubMed]
-
(2016)
Chem Bio Chem
, vol.17
, pp. 2189-2198
-
-
Thanapipatsiri, A.1
Gomez-Escribano, J.P.2
Song, L.3
Bibb, M.J.4
Al-Bassam, M.5
Chandra, G.6
Thamchaipenet, A.7
Challis, G.L.8
Bibb, M.J.9
-
224
-
-
85017266739
-
CRISPR-Cas9 strategy for activation of silent Streptomyces biosynthetic gene clusters
-
[CrossRef] [PubMed]
-
Zhang, M.M.; Wong, F.T.; Wang, Y.; Luo, S.; Lim, Y.H.; Heng, E.; Yeo, W.L.; Cobb, R.E.; Enghiad, B.; Ang, E.L. et al. CRISPR-Cas9 strategy for activation of silent Streptomyces biosynthetic gene clusters. Nat. Chem. Biol. 2017. [CrossRef] [PubMed]
-
(2017)
Nat. Chem. Biol
-
-
Zhang, M.M.1
Wong, F.T.2
Wang, Y.3
Luo, S.4
Lim, Y.H.5
Heng, E.6
Yeo, W.L.7
Cobb, R.E.8
Enghiad, B.9
Ang, E.L.10
-
225
-
-
42949136443
-
Genome mining for novel natural product discovery
-
[CrossRef] [PubMed]
-
Challis, G.L. Genome mining for novel natural product discovery. J. Med. Chem. 2008, 51, 2618–2628. [CrossRef] [PubMed]
-
(2008)
J. Med. Chem
, vol.51
, pp. 2618-2628
-
-
Challis, G.L.1
-
226
-
-
84947591905
-
Dereplication strategies in natural product research: How many tools and methodologies behind the same concept?
-
[CrossRef]
-
Hubert, J.; Nuzillard, J.-M.; Renault, J.-H. Dereplication strategies in natural product research: How many tools and methodologies behind the same concept? Phytochem. Rev. 2017, 16, 55–95. [CrossRef]
-
(2017)
Phytochem. Rev
, vol.16
, pp. 55-95
-
-
Hubert, J.1
Nuzillard, J.-M.2
Renault, J.-H.3
-
227
-
-
84903142904
-
Metabolomics for secondary metabolite research
-
[CrossRef] [PubMed]
-
Breitling, R.; Ceniceros, A.; Jankevics, A.; Takano, E. Metabolomics for secondary metabolite research. Metabolites 2013, 2013, 1076–1083. [CrossRef] [PubMed]
-
(2013)
Metabolites
, vol.2013
, pp. 1076-1083
-
-
Breitling, R.1
Ceniceros, A.2
Jankevics, A.3
Takano, E.4
-
228
-
-
84863629449
-
Metabolomics methods for the synthetic biology of secondary metabolism
-
[CrossRef] [PubMed]
-
Nguyen, Q.T.; Merlo, M.E.; Medema, M.H.; Jankevics, A.; Breitling, R.; Takano, E. Metabolomics methods for the synthetic biology of secondary metabolism. FEBS Lett. 2012, 586, 2177–2183. [CrossRef] [PubMed]
-
(2012)
FEBS Lett
, vol.586
, pp. 2177-2183
-
-
Nguyen, Q.T.1
Merlo, M.E.2
Medema, M.H.3
Jankevics, A.4
Breitling, R.5
Takano, E.6
-
229
-
-
78649951807
-
Advances in techniques for profiling crude extracts and for the rapid identification of natural products: Dereplication, quality control and metabolomics
-
[CrossRef]
-
Wolfender, J.-L.; Marti, G.; Ferreira Queiroz, E. Advances in techniques for profiling crude extracts and for the rapid identification of natural products: Dereplication, quality control and metabolomics. Curr. Org. Chem. 2010, 14, 1808–1832. [CrossRef]
-
(2010)
Curr. Org. Chem
, vol.14
, pp. 1808-1832
-
-
Wolfender, J.-L.1
Marti, G.2
Ferreira Queiroz, E.3
-
230
-
-
84861179772
-
Microbial strain prioritization using metabolomics tools for the discovery of natural products
-
[CrossRef] [PubMed]
-
Hou, Y.; Braun, D.R.; Michel, C.R.; Klassen, J.L.; Adnani, N.; Wyche, T.P.; Bugni, T.S. Microbial strain prioritization using metabolomics tools for the discovery of natural products. Anal. Chem. 2012, 84, 4277–4283. [CrossRef] [PubMed]
-
(2012)
Anal. Chem
, vol.84
, pp. 4277-4283
-
-
Hou, Y.1
Braun, D.R.2
Michel, C.R.3
Klassen, J.L.4
Adnani, N.5
Wyche, T.P.6
Bugni, T.S.7
-
231
-
-
80755172598
-
Imaging mass spectrometry and genome mining via short sequence tagging identified the anti-infective agent arylomycin in Streptomyces roseosporus
-
[CrossRef] [PubMed]
-
Liu, W.-T.; Kersten, R.D.; Yang, Y.-L.; Moore, B.S.; Dorrestein, P.C. Imaging mass spectrometry and genome mining via short sequence tagging identified the anti-infective agent arylomycin in Streptomyces roseosporus. J. Am. Chem. Soc. 2011, 133, 18010–18013. [CrossRef] [PubMed]
-
(2011)
J. Am. Chem. Soc
, vol.133
, pp. 18010-18013
-
-
Liu, W.-T.1
Kersten, R.D.2
Yang, Y.-L.3
Moore, B.S.4
Dorrestein, P.C.5
-
232
-
-
85008482009
-
Morphological identification of actinobacteria
-
Dhanasekaran, D., Jiang, Y., Eds.; InTech: Rijeka, Croatia
-
Li, Q.; Chen, X.; Jiang, Y.; Jiang, C. Morphological identification of actinobacteria. In Actinobacteria—Basics and Biotechnological Applications; Dhanasekaran, D., Jiang, Y., Eds.; InTech: Rijeka, Croatia, 2016.
-
(2016)
Actinobacteria—Basics and Biotechnological Applications
-
-
Li, Q.1
Chen, X.2
Jiang, Y.3
Jiang, C.4
-
233
-
-
79551488636
-
Mycolic acid-containing bacteria induce natural-product biosynthesis in Streptomyces species
-
[CrossRef] [PubMed]
-
Onaka, H.; Mori, Y.; Igarashi, Y.; Furumai, T. Mycolic acid-containing bacteria induce natural-product biosynthesis in Streptomyces species. Appl. Environ. Microbiol. 2011, 77, 400–406. [CrossRef] [PubMed]
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 400-406
-
-
Onaka, H.1
Mori, Y.2
Igarashi, Y.3
Furumai, T.4
-
234
-
-
73549086351
-
Translating metabolic exchange with imaging mass spectrometry
-
[CrossRef] [PubMed]
-
Yang, Y.L.; Xu, Y.; Straight, P.; Dorrestein, P.C. Translating metabolic exchange with imaging mass spectrometry. Nat. Chem. Biol. 2009, 5, 885–887. [CrossRef] [PubMed]
-
(2009)
Nat. Chem. Biol
, vol.5
, pp. 885-887
-
-
Yang, Y.L.1
Xu, Y.2
Straight, P.3
Dorrestein, P.C.4
-
235
-
-
70450190500
-
Imaging mass spectrometry of natural products
-
[CrossRef] [PubMed]
-
Esquenazi, E.; Yang, Y.L.; Watrous, J.; Gerwick, W.H.; Dorrestein, P.C. Imaging mass spectrometry of natural products. Nat. Prod. Rep. 2009, 26, 1521–1534. [CrossRef] [PubMed]
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 1521-1534
-
-
Esquenazi, E.1
Yang, Y.L.2
Watrous, J.3
Gerwick, W.H.4
Dorrestein, P.C.5
-
236
-
-
80051787832
-
Imaging mass spectrometry in microbiology
-
[CrossRef] [PubMed]
-
Watrous, J.D.; Dorrestein, P.C. Imaging mass spectrometry in microbiology. Nat. Rev. Microbiol. 2011, 9, 683–694. [CrossRef] [PubMed]
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 683-694
-
-
Watrous, J.D.1
Dorrestein, P.C.2
-
237
-
-
38849173204
-
Simulation of atmospheric transport and droplet-thin film collisions in desorption electrospray ionization
-
[CrossRef] [PubMed]
-
Costa, A.B.; Cooks, R.G. Simulation of atmospheric transport and droplet-thin film collisions in desorption electrospray ionization. Chem. Commun. 2007, 3915–3917. [CrossRef] [PubMed]
-
(2007)
Chem. Commun
, pp. 3915-3917
-
-
Costa, A.B.1
Cooks, R.G.2
-
238
-
-
80054865417
-
A mass spectrometry-guided genome mining approach for natural product peptidogenomics
-
[CrossRef] [PubMed]
-
Kersten, R.D.; Yang, Y.L.; Xu, Y.; Cimermancic, P.; Nam, S.J.; Fenical, W.; Fischbach, M.A.; Moore, B.S.; Dorrestein, P.C. A mass spectrometry-guided genome mining approach for natural product peptidogenomics. Nat. Chem. Biol. 2011, 7, 794–802. [CrossRef] [PubMed]
-
(2011)
Nat. Chem. Biol
, vol.7
, pp. 794-802
-
-
Kersten, R.D.1
Yang, Y.L.2
Xu, Y.3
Cimermancic, P.4
Nam, S.J.5
Fenical, W.6
Fischbach, M.A.7
Moore, B.S.8
Dorrestein, P.C.9
-
239
-
-
41449101176
-
Subsurface biomolecular imaging of Streptomyces coelicolor using secondary ion mass spectrometry
-
[CrossRef] [PubMed]
-
Vaidyanathan, S.; Fletcher, J.S.; Goodacre, R.; Lockyer, N.P.; Micklefield, J.; Vickerman, J.C. Subsurface biomolecular imaging of Streptomyces coelicolor using secondary ion mass spectrometry. Anal. Chem. 2008, 80, 1942–1951. [CrossRef] [PubMed]
-
(2008)
Anal. Chem
, vol.80
, pp. 1942-1951
-
-
Vaidyanathan, S.1
Fletcher, J.S.2
Goodacre, R.3
Lockyer, N.P.4
Micklefield, J.5
Vickerman, J.C.6
-
240
-
-
84883430904
-
Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome
-
[CrossRef] [PubMed]
-
Traxler, M.F.; Watrous, J.D.; Alexandrov, T.; Dorrestein, P.C.; Kolter, R. Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome. mBio 2013, 4. [CrossRef] [PubMed]
-
(2013)
Mbio
, pp. 4
-
-
Traxler, M.F.1
Watrous, J.D.2
Alexandrov, T.3
Dorrestein, P.C.4
Kolter, R.5
-
241
-
-
85029171356
-
Constant-distance mode nanospray desorption electrospray ionization mass spectrometry imaging of biological samples with complex topography
-
[CrossRef] [PubMed]
-
Nguyen, S.N.; Liyu, A.V.; Chu, R.K.; Anderton, C.R.; Laskin, J. Constant-distance mode nanospray desorption electrospray ionization mass spectrometry imaging of biological samples with complex topography. Anal. Chem. 2017, 89, 1131–1137. [CrossRef] [PubMed]
-
(2017)
Anal. Chem
, vol.89
, pp. 1131-1137
-
-
Nguyen, S.N.1
Liyu, A.V.2
Chu, R.K.3
Anderton, C.R.4
Laskin, J.5
-
242
-
-
80052371361
-
Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry
-
[CrossRef] [PubMed]
-
Gonzalez, D.J.; Haste, N.M.; Hollands, A.; Fleming, T.C.; Hamby, M.; Pogliano, K.; Nizet, V.; Dorrestein, P.C. Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry. Microbiology 2011, 157, 2485–2492. [CrossRef] [PubMed]
-
(2011)
Microbiology
, vol.157
, pp. 2485-2492
-
-
Gonzalez, D.J.1
Haste, N.M.2
Hollands, A.3
Fleming, T.C.4
Hamby, M.5
Pogliano, K.6
Nizet, V.7
Dorrestein, P.C.8
-
243
-
-
84867576178
-
Imaging secondary metabolism of Streptomyces sp. Mg1 during cellular lysis and colony degradation of competing Bacillus subtilis
-
[CrossRef] [PubMed]
-
Barger, S.R.; Hoefler, B.C.; Cubillos-Ruiz, A.; Russell, W.K.; Russell, D.H.; Straight, P.D. Imaging secondary metabolism of Streptomyces sp. Mg1 during cellular lysis and colony degradation of competing Bacillus subtilis. Anton. Leeuwenhoek 2012, 102, 435–445. [CrossRef] [PubMed]
-
(2012)
Anton. Leeuwenhoek
, vol.102
, pp. 435-445
-
-
Barger, S.R.1
Hoefler, B.C.2
Cubillos-Ruiz, A.3
Russell, W.K.4
Russell, D.H.5
Straight, P.D.6
-
244
-
-
85025152010
-
Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants
-
[CrossRef] [PubMed]
-
Boya, P.C.A.; Fernández-Marín, H.; Mejía, L.C.; Spadafora, C.; Dorrestein, P.C.; Gutiérrez, M. Imaging mass spectrometry and MS/MS molecular networking reveals chemical interactions among cuticular bacteria and pathogenic fungi associated with fungus-growing ants. Sci. Rep. 2017, 7. [CrossRef] [PubMed]
-
(2017)
Sci. Rep
, pp. 7
-
-
Boya, P.C.A.1
Fernández-Marín, H.2
Mejía, L.C.3
Spadafora, C.4
Dorrestein, P.C.5
Gutiérrez, M.6
-
245
-
-
85029430934
-
A link between linearmycin biosynthesis and extracellular vesicle genesis connects specialized metabolism and bacterial membrane physiology
-
[CrossRef] [PubMed]
-
Hoefler, B.C.; Stubbendieck, R.M.; Josyula, N.K.; Moisan, S.M.; Schulze, E.M.; Straight, P.D. A link between linearmycin biosynthesis and extracellular vesicle genesis connects specialized metabolism and bacterial membrane physiology. Cell Chem. Biol. 2017, 24, 1238–1249. [CrossRef] [PubMed]
-
(2017)
Cell Chem. Biol
, vol.24
, pp. 1238-1249
-
-
Hoefler, B.C.1
Stubbendieck, R.M.2
Josyula, N.K.3
Moisan, S.M.4
Schulze, E.M.5
Straight, P.D.6
-
246
-
-
79960972278
-
Natural products as catalysts for innovation: A pharmaceutical industry perspective
-
[CrossRef] [PubMed]
-
Schmitt, E.K.; Moore, C.M.; Krastel, P.; Petersen, F. Natural products as catalysts for innovation: A pharmaceutical industry perspective. Curr. Opin. Chem. Biol. 2011, 15, 497–504. [CrossRef] [PubMed]
-
(2011)
Curr. Opin. Chem. Biol
, vol.15
, pp. 497-504
-
-
Schmitt, E.K.1
Moore, C.M.2
Krastel, P.3
Petersen, F.4
-
247
-
-
23644451183
-
LC-NMR coupling technology: Recent advancements and applications in natural products analysis
-
[CrossRef] [PubMed]
-
Exarchou, V.; Krucker, M.; van Beek, T.A.; Vervoort, J.; Gerothanassis, I.P.; Albert, K. LC-NMR coupling technology: Recent advancements and applications in natural products analysis. Magn. Reson. Chem. 2005, 43, 681–687. [CrossRef] [PubMed]
-
(2005)
Magn. Reson. Chem
, vol.43
, pp. 681-687
-
-
Exarchou, V.1
Krucker, M.2
Van Beek, T.A.3
Vervoort, J.4
Gerothanassis, I.P.5
Albert, K.6
-
248
-
-
33751021133
-
Extending the scope of NMR spectroscopy with microcoil probes
-
[CrossRef] [PubMed]
-
Schroeder, F.C.; Gronquist, M. Extending the scope of NMR spectroscopy with microcoil probes. Angew. Chem. Int. Ed. Engl. 2006, 45, 7122–7131. [CrossRef] [PubMed]
-
(2006)
Angew. Chem. Int. Ed. Engl
, vol.45
, pp. 7122-7131
-
-
Schroeder, F.C.1
Gronquist, M.2
-
249
-
-
51849145036
-
Online structural elucidation of alkaloids and other constituents in crude extracts and cultured cells of Nandina domestica by combination of LC-MS/MS, LC-NMR, and LC-CD analyses
-
[CrossRef] [PubMed]
-
Iwasa, K.; Takahashi, T.; Nishiyama, Y.; Moriyasu, M.; Sugiura, M.; Takeuchi, A.; Tode, C.; Tokuda, H.; Takeda, K. Online structural elucidation of alkaloids and other constituents in crude extracts and cultured cells of Nandina domestica by combination of LC-MS/MS, LC-NMR, and LC-CD analyses. J. Nat. Prod. 2008, 71, 1376–1385. [CrossRef] [PubMed]
-
(2008)
J. Nat. Prod
, vol.71
, pp. 1376-1385
-
-
Iwasa, K.1
Takahashi, T.2
Nishiyama, Y.3
Moriyasu, M.4
Sugiura, M.5
Takeuchi, A.6
Tode, C.7
Tokuda, H.8
Takeda, K.9
-
250
-
-
77749304417
-
Biotransformation of phenolic tetrahydroprotoberberines in plant cell cultures followed by LC-NMR, LC-MS, and LC-CD
-
[CrossRef] [PubMed]
-
Iwasa, K.; Cui, W.; Takahashi, T.; Nishiyama, Y.; Kamigauchi, M.; Koyama, J.; Takeuchi, A.; Moriyasu, M.; Takeda, K. Biotransformation of phenolic tetrahydroprotoberberines in plant cell cultures followed by LC-NMR, LC-MS, and LC-CD. J. Nat. Prod. 2010, 73, 115–122. [CrossRef] [PubMed]
-
(2010)
J. Nat. Prod
, vol.73
, pp. 115-122
-
-
Iwasa, K.1
Cui, W.2
Takahashi, T.3
Nishiyama, Y.4
Kamigauchi, M.5
Koyama, J.6
Takeuchi, A.7
Moriyasu, M.8
Takeda, K.9
-
251
-
-
37249028360
-
Biotransformation of phenolic 1-benzyl-N-methyltetrahydroisoquinolines in plant cell cultures followed by LC/NMR, LC/MS, and LC/CD
-
[CrossRef] [PubMed]
-
Cui, W.; Iwasa, K.; Sugiura, M.; Takeuchi, A.; Tode, C.; Nishiyama, Y.; Moriyasu, M.; Tokuda, H.; Takeda, K. Biotransformation of phenolic 1-benzyl-N-methyltetrahydroisoquinolines in plant cell cultures followed by LC/NMR, LC/MS, and LC/CD. J. Nat. Prod. 2007, 70, 1771–1778. [CrossRef] [PubMed]
-
(2007)
J. Nat. Prod
, vol.70
, pp. 1771-1778
-
-
Cui, W.1
Iwasa, K.2
Sugiura, M.3
Takeuchi, A.4
Tode, C.5
Nishiyama, Y.6
Moriyasu, M.7
Tokuda, H.8
Takeda, K.9
-
252
-
-
33645812730
-
Hyphenated chromatographic techniques for the rapid screening and identification of antioxidants in methanolic extracts of pharmaceutically used plants
-
[CrossRef] [PubMed]
-
Exarchou, V.; Fiamegos, Y.C.; van Beek, T.A.; Nanos, C.; Vervoort, J. Hyphenated chromatographic techniques for the rapid screening and identification of antioxidants in methanolic extracts of pharmaceutically used plants. J. Chromatogr. A 2006, 1112, 293–302. [CrossRef] [PubMed]
-
(2006)
J. Chromatogr. A
, vol.1112
, pp. 293-302
-
-
Exarchou, V.1
Fiamegos, Y.C.2
Van Beek, T.A.3
Nanos, C.4
Vervoort, J.5
-
253
-
-
2342652285
-
Hyphenation of capillary HPLC to microcoil 1H NMR spectroscopy for the determination of tocopherol homologues
-
[CrossRef] [PubMed]
-
Krucker, M.; Lienau, A.; Putzbach, K.; Grynbaum, M.D.; Schuler, P.; Albert, K. Hyphenation of capillary HPLC to microcoil 1H NMR spectroscopy for the determination of tocopherol homologues. Anal. Chem. 2004, 76, 2623–2628. [CrossRef] [PubMed]
-
(2004)
Anal. Chem
, vol.76
, pp. 2623-2628
-
-
Krucker, M.1
Lienau, A.2
Putzbach, K.3
Grynbaum, M.D.4
Schuler, P.5
Albert, K.6
-
254
-
-
79958117216
-
Identification and quantification of flavonoids and ellagic acid derivatives in therapeutically important Drosera species by LC-DAD, LC-NMR, NMR, and LC-MS
-
[CrossRef] [PubMed]
-
Zehl, M.; Braunberger, C.; Conrad, J.; Crnogorac, M.; Krasteva, S.; Vogler, B.; Beifuss, U.; Krenn, L. Identification and quantification of flavonoids and ellagic acid derivatives in therapeutically important Drosera species by LC-DAD, LC-NMR, NMR, and LC-MS. Anal. Bioanal. Chem. 2011, 400, 2565–2576. [CrossRef] [PubMed]
-
(2011)
Anal. Bioanal. Chem
, vol.400
, pp. 2565-2576
-
-
Zehl, M.1
Braunberger, C.2
Conrad, J.3
Crnogorac, M.4
Krasteva, S.5
Vogler, B.6
Beifuss, U.7
Krenn, L.8
-
255
-
-
19344374274
-
Cyclolignans from Scyphocephalium ochocoa via high-throughput natural product chemistry methods
-
[CrossRef] [PubMed]
-
Hu, J.-F.; Garo, E.; Yoo, H.-D.; Cremin, P.A.; Goering, M.G.; O’Neil-Johnson, M.; Eldridge, G.R. Cyclolignans from Scyphocephalium ochocoa via high-throughput natural product chemistry methods. Phytochemistry 2005, 66, 1077–1082. [CrossRef] [PubMed]
-
(2005)
Phytochemistry
, vol.66
, pp. 1077-1082
-
-
Hu, J.-F.1
Garo, E.2
Yoo, H.-D.3
Cremin, P.A.4
Goering, M.G.5
O’neil-Johnson, M.6
Eldridge, G.R.7
-
256
-
-
82355190310
-
From retrospective assessment to prospective decisions in natural product isolation: HPLC-SPE-NMR analysis of Carthamus oxyacantha
-
[CrossRef] [PubMed]
-
Johansen, K.T.; Wubshet, S.G.; Nyberg, N.T.; Jaroszewski, J.W. From retrospective assessment to prospective decisions in natural product isolation: HPLC-SPE-NMR analysis of Carthamus oxyacantha. J. Nat. Prod. 2011, 74, 2454–2461. [CrossRef] [PubMed]
-
(2011)
J. Nat. Prod
, vol.74
, pp. 2454-2461
-
-
Johansen, K.T.1
Wubshet, S.G.2
Nyberg, N.T.3
Jaroszewski, J.W.4
-
257
-
-
54149092551
-
Evolving trends in the dereplication of natural product extracts: New methodology for rapid, small-scale investigation of natural product extracts
-
[CrossRef] [PubMed]
-
Lang, G.; Mayhudin, N.A.; Mitova, M.I.; Sun, L.; van der, S.S.; Blunt, J.W.; Cole, A.L.; Ellis, G.; Laatsch, H.; Munro, M.H. Evolving trends in the dereplication of natural product extracts: New methodology for rapid, small-scale investigation of natural product extracts. J. Nat. Prod. 2008, 71, 1595–1599. [CrossRef] [PubMed]
-
(2008)
J. Nat. Prod
, vol.71
, pp. 1595-1599
-
-
Lang, G.1
Mayhudin, N.A.2
Mitova, M.I.3
Sun, L.4
Van Der, S.S.5
Blunt, J.W.6
Cole, A.L.7
Ellis, G.8
Laatsch, H.9
Munro, M.H.10
-
258
-
-
84935047429
-
Macyranones: Structure, biosynthesis, and binding mode of an unprecedented epoxyketone that targets the 20S proteasome
-
[CrossRef] [PubMed]
-
Keller, L.; Plaza, A.; Dubiella, C.; Groll, M.; Kaiser, M.; Muller, R. Macyranones: Structure, biosynthesis, and binding mode of an unprecedented epoxyketone that targets the 20S proteasome. J. Am. Chem. Soc. 2015, 137, 8121–8130. [CrossRef] [PubMed]
-
(2015)
J. Am. Chem. Soc
, vol.137
, pp. 8121-8130
-
-
Keller, L.1
Plaza, A.2
Dubiella, C.3
Groll, M.4
Kaiser, M.5
Muller, R.6
-
259
-
-
55549089989
-
Microscale LC-MS-NMR platform applied to the identification of active cyanobacterial metabolites
-
[CrossRef] [PubMed]
-
Lin, Y.; Schiavo, S.; Orjala, J.; Vouros, P.; Kautz, R. Microscale LC-MS-NMR platform applied to the identification of active cyanobacterial metabolites. Anal. Chem. 2008, 80, 8045–8054. [CrossRef] [PubMed]
-
(2008)
Anal. Chem
, vol.80
, pp. 8045-8054
-
-
Lin, Y.1
Schiavo, S.2
Orjala, J.3
Vouros, P.4
Kautz, R.5
-
260
-
-
23644456560
-
Identification of secondary metabolites from Streptomyces violaceoruber TU22 by means of on-flow LC-NMR and LC-DAD-MS
-
[CrossRef] [PubMed]
-
Pham, L.H.; Vater, J.; Rotard, W.; Mügge, C. Identification of secondary metabolites from Streptomyces violaceoruber TU22 by means of on-flow LC-NMR and LC-DAD-MS. Magn. Reson. Chem. 2005, 43, 710–723. [CrossRef] [PubMed]
-
(2005)
Magn. Reson. Chem
, vol.43
, pp. 710-723
-
-
Pham, L.H.1
Vater, J.2
Rotard, W.3
Mügge, C.4
-
261
-
-
85026472869
-
Isolation, purification, and characterization of five active diketopiperazine derivatives from endophytic Streptomyces SUK 25 with antimicrobial and cytotoxic activities
-
[CrossRef] [PubMed]
-
Alshaibani, M.; Zin, N.; Jalil, J.; Sidik, N.; Ahmad, S.J.; Kamal, N.; Edrada-Ebel, R. Isolation, purification, and characterization of five active diketopiperazine derivatives from endophytic Streptomyces SUK 25 with antimicrobial and cytotoxic activities. J. Microbiol. Biotechnol. 2017, 27, 1249–1256. [CrossRef] [PubMed]
-
(2017)
J. Microbiol. Biotechnol
, vol.27
, pp. 1249-1256
-
-
Alshaibani, M.1
Zin, N.2
Jalil, J.3
Sidik, N.4
Ahmad, S.J.5
Kamal, N.6
Edrada-Ebel, R.7
-
262
-
-
85017323566
-
Discovery of anti-microbial and anti-tubercular molecules from Fusarium solani: An endophyte of Glycyrrhiza glabra
-
[CrossRef] [PubMed]
-
Shah, A.; Rather, M.A.; Hassan, Q.P.; Aga, M.A.; Mushtaq, S.; Shah, A.M.; Hussain, A.; Baba, S.A.; Ahmad, Z. Discovery of anti-microbial and anti-tubercular molecules from Fusarium solani: An endophyte of Glycyrrhiza glabra. J. Appl. Microbiol. 2017, 122, 1168–1176. [CrossRef] [PubMed]
-
(2017)
J. Appl. Microbiol
, vol.122
, pp. 1168-1176
-
-
Shah, A.1
Rather, M.A.2
Hassan, Q.P.3
Aga, M.A.4
Mushtaq, S.5
Shah, A.M.6
Hussain, A.7
Baba, S.A.8
Ahmad, Z.9
-
263
-
-
85011629856
-
From a natural product to its biosynthetic gene cluster: A demonstration using polyketomycin from Streptomyces diastatochromogenes Tü6028
-
[CrossRef] [PubMed]
-
Greule, A.; Zhang, S.; Paululat, T.; Bechthold, A. From a natural product to its biosynthetic gene cluster: a demonstration using polyketomycin from Streptomyces diastatochromogenes Tü6028. J. Vis. Exp. 2017. [CrossRef] [PubMed]
-
(2017)
J. Vis. Exp
-
-
Greule, A.1
Zhang, S.2
Paululat, T.3
Bechthold, A.4
-
264
-
-
85045519990
-
Supercritical fluid chromatography in natural product analysis—An update
-
[CrossRef] [PubMed]
-
Gibitz Eisath, N.; Sturm, S.; Stuppner, H. Supercritical fluid chromatography in natural product analysis—An update. Planta Med. 2017. [CrossRef] [PubMed]
-
(2017)
Planta Med
-
-
Gibitz Eisath, N.1
Sturm, S.2
Stuppner, H.3
-
265
-
-
84991074965
-
Comparison of liquid and supercritical fluid chromatography mobile phases for enantioselective separations on polysaccharide stationary phases
-
[CrossRef] [PubMed]
-
Khater, S.; Lozac’h, M.-A.; Adam, I.; Francotte, E.; West, C. Comparison of liquid and supercritical fluid chromatography mobile phases for enantioselective separations on polysaccharide stationary phases. J. Chromatogr. A 2016, 1467, 463–472. [CrossRef] [PubMed]
-
(2016)
J. Chromatogr. A
, vol.1467
, pp. 463-472
-
-
Khater, S.1
Lozac’H, M.-A.2
Adam, I.3
Francotte, E.4
West, C.5
-
266
-
-
84865078358
-
Supercritical fluid chromatography for the enantioseparation of pharmaceuticals
-
[CrossRef] [PubMed]
-
De Klerck, K.; Mangelings, D.; Vander Heyden, Y. Supercritical fluid chromatography for the enantioseparation of pharmaceuticals. J. Pharm. Biomed. Anal. 2012, 69, 77–92. [CrossRef] [PubMed]
-
(2012)
J. Pharm. Biomed. Anal
, vol.69
, pp. 77-92
-
-
De Klerck, K.1
Mangelings, D.2
Vander Heyden, Y.3
-
267
-
-
84899079126
-
Modern analytical supercritical fluid chromatography using columns packed with sub-2 μm particles: A tutorial
-
[CrossRef] [PubMed]
-
Novakova, L.; Perrenoud, A.G.-G.; Francois, I.; West, C.; Lesellier, E.; Guillarme, D. Modern analytical supercritical fluid chromatography using columns packed with sub-2 μm particles: A tutorial. Anal. Chim. Acta 2014, 824, 18–35. [CrossRef] [PubMed]
-
(2014)
Anal. Chim. Acta
, vol.824
, pp. 18-35
-
-
Novakova, L.1
Perrenoud, A.G.2
Francois, I.3
West, C.4
Lesellier, E.5
Guillarme, D.6
-
268
-
-
84922937025
-
The many faces of packed column supercritical fluid chromatography—A critical review
-
[CrossRef] [PubMed]
-
Lesellier, E.; West, C. The many faces of packed column supercritical fluid chromatography—A critical review. J. Chromatogr. A 2015, 1382, 2–46. [CrossRef] [PubMed]
-
(2015)
J. Chromatogr. A
, vol.1382
, pp. 2-46
-
-
Lesellier, E.1
West, C.2
-
269
-
-
84959934171
-
An improved classification of stationary phases for ultra-high performance supercritical fluid chromatography
-
[CrossRef] [PubMed]
-
West, C.; Lemasson, E.; Bertin, S.; Hennig, P.; Lesellier, E. An improved classification of stationary phases for ultra-high performance supercritical fluid chromatography. J. Chromatogr. A 2016, 1440, 212–228. [CrossRef] [PubMed]
-
(2016)
J. Chromatogr. A
, vol.1440
, pp. 212-228
-
-
West, C.1
Lemasson, E.2
Bertin, S.3
Hennig, P.4
Lesellier, E.5
-
270
-
-
85027925386
-
Concurrent supercritical fluid chromatographic analysis of terpene lactones and ginkgolic acids in Ginkgo biloba extracts and dietary supplements
-
[CrossRef] [PubMed]
-
Wang, M.; Carrell, E.J.; Chittiboyina, A.G.; Avula, B.; Wang, Y.-H.; Zhao, J.; Parcher, J.F.; Khan, I.A. Concurrent supercritical fluid chromatographic analysis of terpene lactones and ginkgolic acids in Ginkgo biloba extracts and dietary supplements. Anal. Bioanal. Chem. 2016, 408, 4649–4660. [CrossRef] [PubMed]
-
(2016)
Anal. Bioanal. Chem
, vol.408
, pp. 4649-4660
-
-
Wang, M.1
Carrell, E.J.2
Chittiboyina, A.G.3
Avula, B.4
Wang, Y.-H.5
Zhao, J.6
Parcher, J.F.7
Khan, I.A.8
-
271
-
-
85017132394
-
Development and validation of a fast SFC method for the analysis of flavonoids in plant extracts
-
[CrossRef] [PubMed]
-
Huang, Y.; Feng, Y.; Tang, G.; Li, M.; Zhang, T.; Fillet, M.; Crommen, J.; Jiang, Z. Development and validation of a fast SFC method for the analysis of flavonoids in plant extracts. J. Pharm. Biomed. Anal. 2017, 140, 384–391. [CrossRef] [PubMed]
-
(2017)
J. Pharm. Biomed. Anal
, vol.140
, pp. 384-391
-
-
Huang, Y.1
Feng, Y.2
Tang, G.3
Li, M.4
Zhang, T.5
Fillet, M.6
Crommen, J.7
Jiang, Z.8
-
272
-
-
84875533508
-
Isolation of carnosic acid from rosemary extracts using semi-preparative supercritical fluid chromatography
-
[CrossRef] [PubMed]
-
Vicente, G.; García-Risco, M.R.; Fornari, T.; Reglero, G. Isolation of carnosic acid from rosemary extracts using semi-preparative supercritical fluid chromatography. J. Chromatogr. A 2013, 1286, 208–215. [CrossRef] [PubMed]
-
(2013)
J. Chromatogr. A
, vol.1286
, pp. 208-215
-
-
Vicente, G.1
García-Risco, M.R.2
Fornari, T.3
Reglero, G.4
-
273
-
-
57749185451
-
Mathematical modeling of supercritical extraction of valerenic acid from Valeriana officinalis L
-
[CrossRef]
-
Salimi, A.; Fatemi, S.; Zakizadeh Nei Nei, H.; Safaralie, A. Mathematical modeling of supercritical extraction of valerenic acid from Valeriana officinalis L. Chem. Eng. Technol. 2008, 31, 1470–1480. [CrossRef]
-
(2008)
Chem. Eng. Technol
, vol.31
, pp. 1470-1480
-
-
Salimi, A.1
Fatemi, S.2
Zakizadeh Nei Nei, H.3
Safaralie, A.4
-
274
-
-
84883174307
-
Metabolomics and metabonomics
-
2nd ed.; Ramsden, J., Ed.; Springer: New York, NY, USA
-
Ramsden, J.J. Metabolomics and metabonomics. In Bioinformatics: An Introduction, 2nd ed.; Ramsden, J., Ed.; Springer: New York, NY, USA, 2009; pp. 1–6.
-
(2009)
Bioinformatics: An Introduction
, pp. 1-6
-
-
Ramsden, J.J.1
-
275
-
-
84963744331
-
Current status and prospects of computational resources for natural product dereplication: A review
-
[CrossRef] [PubMed]
-
Mohamed, A.; Nguyen, C.H.; Mamitsuka, H. Current status and prospects of computational resources for natural product dereplication: A review. Brief. Bioinform. 2016, 17, 309–321. [CrossRef] [PubMed]
-
(2016)
Brief. Bioinform
, vol.17
, pp. 309-321
-
-
Mohamed, A.1
Nguyen, C.H.2
Mamitsuka, H.3
-
276
-
-
0025185010
-
Dereplication of phorbol bioactives: Lyngbya majuscula and Croton cuneatus
-
[CrossRef] [PubMed]
-
Beutler, J.A.; Alvarado, A.B.; Schaufelberger, D.E.; Andrews, P.; McCloud, T.G. Dereplication of phorbol bioactives: Lyngbya majuscula and Croton cuneatus. J. Nat. Prod. 1990, 53, 867–874. [CrossRef] [PubMed]
-
(1990)
J. Nat. Prod
, vol.53
, pp. 867-874
-
-
Beutler, J.A.1
Alvarado, A.B.2
Schaufelberger, D.E.3
Andrews, P.4
McCloud, T.G.5
-
277
-
-
85026832598
-
Natural product discovery using planes of principal component analysis in R (PoPCAR)
-
[CrossRef] [PubMed]
-
Chanana, S.; Thomas, C.S.; Braun, D.R.; Hou, Y.; Wyche, T.P.; Bugni, T.S. Natural product discovery using planes of principal component analysis in R (PoPCAR). Metabolites 2017, 7. [CrossRef] [PubMed]
-
(2017)
Metabolites
, pp. 7
-
-
Chanana, S.1
Thomas, C.S.2
Braun, D.R.3
Hou, Y.4
Wyche, T.P.5
Bugni, T.S.6
-
278
-
-
34547280277
-
Accelerated dereplication of natural products, supported by reference libraries
-
[CrossRef]
-
Bitzer, J.; Köpcke, B.; Stadler, M.; Hellwig, V.; Ju, Y.-M.; Seip, S.; Henkel, T. Accelerated dereplication of natural products, supported by reference libraries. CHIMIA 2007, 61, 332–338. [CrossRef]
-
(2007)
CHIMIA
, vol.61
, pp. 332-338
-
-
Bitzer, J.1
Köpcke, B.2
Stadler, M.3
Hellwig, V.4
Ju, Y.-M.5
Seip, S.6
Henkel, T.7
-
279
-
-
85047999799
-
-
Dictionary of Natural Products
-
Dictionary of Natural Products. Available online: http://dnp.chemnetbase.com/faces/chemical/ ChemicalSearch.xhtml (accessed on 31 January 2018).
-
-
-
-
281
-
-
85015872243
-
Marine natural products
-
[CrossRef] [PubMed]
-
Blunt, J.W.; Copp, B.R.; Keyzers, R.A.; Munro, M.H.G.; Prinsep, M.R. Marine natural products. Nat. Prod. Rep. 2017, 34, 235–294. [CrossRef] [PubMed]
-
(2017)
Nat. Prod. Rep
, vol.34
, pp. 235-294
-
-
Blunt, J.W.1
Copp, B.R.2
Keyzers, R.A.3
Munro, M.H.G.4
Prinsep, M.R.5
-
282
-
-
77954439868
-
MassBank: A public repository for sharing mass spectral data for life sciences
-
[CrossRef] [PubMed]
-
Horai, H.; Arita, M.; Kanaya, S.; Nihei, Y.; Ikeda, T.; Suwa, K.; Ojima, Y.; Tanaka, K.; Tanaka, S.; Aoshima, K. et al. MassBank: A public repository for sharing mass spectral data for life sciences. J. Mass Spectrom. 2010, 45, 703–714. [CrossRef] [PubMed]
-
(2010)
J. Mass Spectrom
, vol.45
, pp. 703-714
-
-
Horai, H.1
Arita, M.2
Kanaya, S.3
Nihei, Y.4
Ikeda, T.5
Suwa, K.6
Ojima, Y.7
Tanaka, K.8
Tanaka, S.9
Aoshima, K.10
-
283
-
-
32444432587
-
METLIN: A metabolite mass spectral database
-
[CrossRef] [PubMed]
-
Smith, C.A.; O’Maille, G.; Want, E.J.; Qin, C.; Trauger, S.A.; Brandon, T.R.; Custodio, D.E.; Abagyan, R.; Siuzdak, G. METLIN: A metabolite mass spectral database. Ther. Drug Monit. 2005, 27, 747–751. [CrossRef] [PubMed]
-
(2005)
Ther. Drug Monit
, vol.27
, pp. 747-751
-
-
Smith, C.A.1
O’Maille, G.2
Want, E.J.3
Qin, C.4
Trauger, S.A.5
Brandon, T.R.6
Custodio, D.E.7
Abagyan, R.8
Siuzdak, G.9
-
285
-
-
84865247010
-
RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database
-
[CrossRef] [PubMed]
-
Sawada, Y.; Nakabayashi, R.; Yamada, Y.; Suzuki, M.; Sato, M.; Sakata, A.; Akiyama, K.; Sakurai, T.; Matsuda, F.; Aoki, T. et al. RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database. Phytochemistry 2012, 82, 38–45. [CrossRef] [PubMed]
-
(2012)
Phytochemistry
, vol.82
, pp. 38-45
-
-
Sawada, Y.1
Nakabayashi, R.2
Yamada, Y.3
Suzuki, M.4
Sato, M.5
Sakata, A.6
Akiyama, K.7
Sakurai, T.8
Matsuda, F.9
Aoki, T.10
-
286
-
-
84942761231
-
An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
-
[CrossRef] [PubMed]
-
Johnston, C.W.; Skinnider, M.A.; Wyatt, M.A.; Li, X.; Ranieri, M.R.M.; Yang, L.; Zechel, D.L.; Ma, B.; Magarvey, N.A. An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products. Nat. Commun. 2015, 6. [CrossRef] [PubMed]
-
(2015)
Nat. Commun
, pp. 6
-
-
Johnston, C.W.1
Skinnider, M.A.2
Wyatt, M.A.3
Li, X.4
Ranieri, M.R.M.5
Yang, L.6
Zechel, D.L.7
Ma, B.8
Magarvey, N.A.9
-
287
-
-
84981297901
-
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
-
[CrossRef] [PubMed]
-
Wang, M.; Carver, J.J.; Phelan, V.V.; Sanchez, L.M.; Garg, N.; Peng, Y.; Nguyen, D.D.; Watrous, J.; Kapono, C.A.; Luzzatto-Knaan, T. et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat. Biotechnol. 2016, 34, 828–837. [CrossRef] [PubMed]
-
(2016)
Nat. Biotechnol
, vol.34
, pp. 828-837
-
-
Wang, M.1
Carver, J.J.2
Phelan, V.V.3
Sanchez, L.M.4
Garg, N.5
Peng, Y.6
Nguyen, D.D.7
Watrous, J.8
Kapono, C.A.9
Luzzatto-Knaan, T.10
-
288
-
-
85047975046
-
Prioritizing natural product diversity in a collection of 146 bacterial strains based on growth and extraction protocols
-
[CrossRef] [PubMed]
-
Crüsemann, M.; O’Neill, E.C.; Larson, C.B.; Melnik, A.V.; Floros, D.J.; da Silva, R.R.; Jensen, P.R.; Dorrestein, P.C.; Moore, B.S. Prioritizing natural product diversity in a collection of 146 bacterial strains based on growth and extraction protocols. J. Nat. Prod. 2016. [CrossRef] [PubMed]
-
(2016)
J. Nat. Prod
-
-
Crüsemann, M.1
O’Neill, E.C.2
Larson, C.B.3
Melnik, A.V.4
Floros, D.J.5
Da Silva, R.R.6
Jensen, P.R.7
Dorrestein, P.C.8
Moore, B.S.9
-
289
-
-
84994681226
-
Dereplication of peptidic natural products through database search of mass spectra
-
[CrossRef] [PubMed]
-
Mohimani, H.; Gurevich, A.; Mikheenko, A.; Garg, N.; Nothias, L.-F.; Ninomiya, A.; Takada, K.; Dorrestein, P.C.; Pevzner, P.A. Dereplication of peptidic natural products through database search of mass spectra. Nat. Chem. Biol. 2017, 13, 30–37. [CrossRef] [PubMed]
-
(2017)
Nat. Chem. Biol
, vol.13
, pp. 30-37
-
-
Mohimani, H.1
Gurevich, A.2
Mikheenko, A.3
Garg, N.4
Nothias, L.-F.5
Ninomiya, A.6
Takada, K.7
Dorrestein, P.C.8
Pevzner, P.A.9
-
290
-
-
85040793388
-
Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra
-
[CrossRef] [PubMed]
-
Gurevich, A.; Mikheenko, A.; Shlemov, A.; Korobeynikov, A.; Mohimani, H.; Pevzner, P.A. Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra. Nat. Microbiol. 2018. [CrossRef] [PubMed]
-
(2018)
Nat. Microbiol
-
-
Gurevich, A.1
Mikheenko, A.2
Shlemov, A.3
Korobeynikov, A.4
Mohimani, H.5
Pevzner, P.A.6
-
291
-
-
85023177786
-
SeMPI: A genome-based secondary metabolite prediction and identification web server
-
[CrossRef] [PubMed]
-
Zierep, P.F.; Padilla, N.; Yonchev, D.G.; Telukunta, K.K.; Klementz, D.; Günther, S. SeMPI: A genome-based secondary metabolite prediction and identification web server. Nucleic Acids Res. 2017, 45, W64–W71. [CrossRef] [PubMed]
-
(2017)
Nucleic Acids Res
, vol.45
, pp. W64-W71
-
-
Zierep, P.F.1
Padilla, N.2
Yonchev, D.G.3
Telukunta, K.K.4
Klementz, D.5
Günther, S.6
-
292
-
-
84883353135
-
AntiSMASH 2.0—A versatile platform for genome mining of secondary metabolite producers
-
[CrossRef] [PubMed]
-
Blin, K.; Medema, M.H.; Kazempour, D.; Fischbach, M.A.; Breitling, R.; Takano, E.; Weber, T. antiSMASH 2.0—A versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res. 2013, 41, W204–W212. [CrossRef] [PubMed]
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W204-W212
-
-
Blin, K.1
Medema, M.H.2
Kazempour, D.3
Fischbach, M.A.4
Breitling, R.5
Takano, E.6
Weber, T.7
-
293
-
-
84907584619
-
Pep2Path: Automated mass spectrometry-guided genome mining of peptidic natural products
-
[CrossRef] [PubMed]
-
Medema, M.H.; Paalvast, Y.; Nguyen, D.D.; Melnik, A.; Dorrestein, P.C.; Takano, E.; Breitling, R. Pep2Path: Automated mass spectrometry-guided genome mining of peptidic natural products. PLoS Comput. Biol. 2014, 10, e1003822. [CrossRef] [PubMed]
-
(2014)
Plos Comput. Biol
, vol.10
-
-
Medema, M.H.1
Paalvast, Y.2
Nguyen, D.D.3
Melnik, A.4
Dorrestein, P.C.5
Takano, E.6
Breitling, R.7
-
294
-
-
84904547209
-
Automated genome mining of ribosomal peptide natural products
-
[CrossRef] [PubMed]
-
Mohimani, H.; Kersten, R.D.; Liu, W.-T.; Wang, M.; Purvine, S.O.; Wu, S.; Brewer, H.M.; Pasa-Tolic, L.; Bandeira, N.; Moore, B.S. et al. Automated genome mining of ribosomal peptide natural products. ACS Chem. Biol. 2014, 9, 1545–1551. [CrossRef] [PubMed]
-
(2014)
ACS Chem. Biol
, vol.9
, pp. 1545-1551
-
-
Mohimani, H.1
Kersten, R.D.2
Liu, W.-T.3
Wang, M.4
Purvine, S.O.5
Wu, S.6
Brewer, H.M.7
Pasa-Tolic, L.8
Bandeira, N.9
Moore, B.S.10
-
295
-
-
85016088764
-
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters
-
[CrossRef] [PubMed]
-
Blin, K.; Medema, M.H.; Kottmann, R.; Lee, S.Y.; Weber, T. The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. Nucleic Acids Res. 2017, 45, D555–D559. [CrossRef] [PubMed]
-
(2017)
Nucleic Acids Res
, vol.45
, pp. D555-D559
-
-
Blin, K.1
Medema, M.H.2
Kottmann, R.3
Lee, S.Y.4
Weber, T.5
-
296
-
-
84893132507
-
MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus
-
[CrossRef] [PubMed]
-
Liu, W.T.; Lamsa, A.; Wong, W.R.; Boudreau, P.D.; Kersten, R.; Peng, Y.; Moree, W.J.; Duggan, B.M.; Moore, B.S.; Gerwick, W.H. et al. MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus. J. Antibiot. 2014, 67, 99–104. [CrossRef] [PubMed]
-
(2014)
J. Antibiot
, vol.67
, pp. 99-104
-
-
Liu, W.T.1
Lamsa, A.2
Wong, W.R.3
Boudreau, P.D.4
Kersten, R.5
Peng, Y.6
Moree, W.J.7
Duggan, B.M.8
Moore, B.S.9
Gerwick, W.H.10
-
297
-
-
34447302758
-
Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
-
[CrossRef] [PubMed]
-
Udwary, D.W.; Zeigler, L.; Asolkar, R.N.; Singan, V.; Lapidus, A.; Fenical, W.; Jensen, P.R.; Moore, B.S. Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. Proc. Natl. Acad. Sci. USA 2007, 104, 10376–10381. [CrossRef] [PubMed]
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 10376-10381
-
-
Udwary, D.W.1
Zeigler, L.2
Asolkar, R.N.3
Singan, V.4
Lapidus, A.5
Fenical, W.6
Jensen, P.R.7
Moore, B.S.8
-
298
-
-
85034651970
-
Thioholgamides: Thioamide-containing cytotoxic RiPPs natural products
-
[CrossRef] [PubMed]
-
Kjaerulff, L.; Sikandar, A.; Zaburannyi, N.; Adam, S.; Herrmann, J.; Koehnke, J.; Müller, R. Thioholgamides: Thioamide-containing cytotoxic RiPPs natural products. ACS Chem. Biol. 2017, 12, 2837–2841. [CrossRef] [PubMed]
-
(2017)
ACS Chem. Biol
, vol.12
, pp. 2837-2841
-
-
Kjaerulff, L.1
Sikandar, A.2
Zaburannyi, N.3
Adam, S.4
Herrmann, J.5
Koehnke, J.6
Müller, R.7
-
299
-
-
84924495328
-
Biological targets and mechanisms of action of natural products from marine cyanobacteria
-
[CrossRef] [PubMed]
-
Salvador-Reyes, L.A.; Luesch, H. Biological targets and mechanisms of action of natural products from marine cyanobacteria. Nat. Prod. Rep. 2015, 32, 478–503. [CrossRef] [PubMed]
-
(2015)
Nat. Prod. Rep
, vol.32
, pp. 478-503
-
-
Salvador-Reyes, L.A.1
Luesch, H.2
-
300
-
-
80655138779
-
Myxobacteria—Unique microbial secondary metabolite factories
-
Moore, B.S., Ed.; Elsevier: Oxford, UK
-
Wenzel, S.C.; Müller, R. Myxobacteria—Unique microbial secondary metabolite factories. In Comprehensive Natural Products Chemistry II, Vol 2: Structural Diversity II—Secondary Metabolite Sources, Evolution and Selected Molecular Structures; Moore, B.S., Ed.; Elsevier: Oxford, UK, 2010; pp. 189–222.
-
(2010)
Comprehensive Natural Products Chemistry II, Vol 2: Structural Diversity II—Secondary Metabolite Sources, Evolution and Selected Molecular Structures
, pp. 189-222
-
-
Wenzel, S.C.1
Müller, R.2
-
301
-
-
84860644406
-
Rare actinomycetes: A potential storehouse for novel antibiotics
-
[CrossRef] [PubMed]
-
Tiwari, K.; Gupta, R.K. Rare actinomycetes: A potential storehouse for novel antibiotics. Crit. Rev. Biotechnol. 2012, 32, 108–132. [CrossRef] [PubMed]
-
(2012)
Crit. Rev. Biotechnol
, vol.32
, pp. 108-132
-
-
Tiwari, K.1
Gupta, R.K.2
-
302
-
-
84997530329
-
Natural products and the gene cluster revolution
-
[CrossRef] [PubMed]
-
Jensen, P.R. Natural products and the gene cluster revolution. Trends Microbiol. 2016, 24, 968–977. [CrossRef] [PubMed]
-
(2016)
Trends Microbiol
, vol.24
, pp. 968-977
-
-
Jensen, P.R.1
-
303
-
-
84863946395
-
The generation of “unnatural” products: Synthetic biology meets synthetic chemistry
-
Goss, R.J.M.; Shankar, S.; Fayad, A.A. The generation of “unnatural” products: Synthetic biology meets synthetic chemistry. Nat. Prod. Rep. 2012, 29, 870–889.
-
(2012)
Nat. Prod. Rep
, vol.29
, pp. 870-889
-
-
Goss, R.J.M.1
Shankar, S.2
Fayad, A.A.3
-
304
-
-
84958247886
-
Synthetic biology to access and expand nature’s chemical diversity
-
[CrossRef] [PubMed]
-
Smanski, M.J.; Zhou, H.; Claesen, J.; Shen, B.; Fischbach, M.A.; Voigt, C.A. Synthetic biology to access and expand nature’s chemical diversity. Nat. Rev. Microbiol. 2016, 14, 135–149. [CrossRef] [PubMed]
-
(2016)
Nat. Rev. Microbiol
, vol.14
, pp. 135-149
-
-
Smanski, M.J.1
Zhou, H.2
Claesen, J.3
Shen, B.4
Fischbach, M.A.5
Voigt, C.A.6
|