메뉴 건너뛰기




Volumn 506, Issue 7486, 2014, Pages 58-62

Erratum: An environmental bacterial taxon with a large and distinct metabolic repertoire (Nature (2014) 506 (58-62) DOI: 10.1038/nature12959));An environmental bacterial taxon with a large and distinct metabolic repertoire

(23)  Wilson, Micheal C a,b   Mori, Tetsushi c   Rückert, Christian d   Uria, Agustinus R a,b   Helf, Maximilian J a,b   Takada, Kentaro e   Gernert, Christine f   Steffens, Ursula A E b   Heycke, Nina b   Schmitt, Susanne g   Rinke, Christian h   Helfrich, Eric J N a,b   Brachmann, Alexander O a   Gurgui, Cristian b   Wakimoto, Toshiyuki i   Kracht, Matthias b   Crüsemann, Max b   Hentschel, Ute f   Abe, Ikuro i   Matsunaga, Shigeki e   more..


Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE; POLYKETIDE;

EID: 84893542053     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13126     Document Type: Erratum
Times cited : (467)

References (66)
  • 1
    • 19644393308 scopus 로고    scopus 로고
    • Bioactive microbial metabolites-A personal view
    • Berdy, J. Bioactive microbial metabolites-a personal view. J. Antibiot. 58, 1-26 (2005).
    • (2005) J. Antibiot. , vol.58 , pp. 1-26
    • Berdy, J.1
  • 2
    • 43849089834 scopus 로고    scopus 로고
    • Microbial diversity and the genetic natureofmicrobial species
    • Achtman, M. & Wagner, M. Microbial diversity and the genetic natureofmicrobial species. Nature Rev. Microbiol. 6, 431-440 (2008).
    • (2008) Nature Rev. Microbiol. , vol.6 , pp. 431-440
    • Achtman, M.1    Wagner, M.2
  • 3
    • 70350230400 scopus 로고    scopus 로고
    • Metagenomic approaches to natural products from free-living and symbiotic organisms
    • Brady, S. F., Simmons, L., Kim, J. H. & Schmidt, E. W. Metagenomic approaches to natural products from free-living and symbiotic organisms. Nat. Prod. Rep. 26, 1488-1503 (2009).
    • (2009) Nat. Prod. Rep. , vol.26 , pp. 1488-1503
    • Brady, S.F.1    Simmons, L.2    Kim, J.H.3    Schmidt, E.W.4
  • 4
    • 80053243567 scopus 로고    scopus 로고
    • Approaches to capturing and designing biologically active small molecules produced by uncultured microbes
    • Piel, J. Approaches to capturing and designing biologically active small molecules produced by uncultured microbes. Annu. Rev. Microbiol. 65, 431-453 (2011).
    • (2011) Annu. Rev. Microbiol. , vol.65 , pp. 431-453
    • Piel, J.1
  • 5
    • 9244230571 scopus 로고    scopus 로고
    • Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont ofthe marine sponge Theonella swinhoei
    • Piel, J. et al. Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont ofthe marine sponge Theonella swinhoei. Proc. Natl. Acad. Sci. USA 101, 16222-16227 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 16222-16227
    • Piel, J.1
  • 6
    • 85027943237 scopus 로고    scopus 로고
    • Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides
    • Freeman, M. F. et al. Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides. Science 338, 387-390 (2012).
    • (2012) Science , vol.338 , pp. 387-390
    • Freeman, M.F.1
  • 7
    • 0036729439 scopus 로고    scopus 로고
    • Molecular evidence for a uniform microbial community in sponges from different oceans
    • Hentschel, U. et al. Molecular evidence for a uniform microbial community in sponges from different oceans. Appl. Environ. Microbiol. 68, 4431-4440 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 4431-4440
    • Hentschel, U.1
  • 8
    • 34250733462 scopus 로고    scopus 로고
    • Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential
    • Taylor, M. W., Radax, R., Steger, D. & Wagner, M. Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol. Mol. Biol. Rev. 71, 295-347 (2007).
    • (2007) Microbiol. Mol. Biol. Rev. , vol.71 , pp. 295-347
    • Taylor, M.W.1    Radax, R.2    Steger, D.3    Wagner, M.4
  • 10
    • 0000915203 scopus 로고
    • Bioactive sponge peptides
    • Fusetani, N. & Matsunaga, S. Bioactive sponge peptides. Chem. Rev. 93, 1793-1806 (1993).
    • (1993) Chem. Rev. , vol.93 , pp. 1793-1806
    • Fusetani, N.1    Matsunaga, S.2
  • 11
    • 40249095175 scopus 로고    scopus 로고
    • Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology
    • Binga, E. K., Lasken, R. S. & Neufeld, J. D. Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. ISME J. 2, 233-241 (2008).
    • (2008) ISME J. , vol.2 , pp. 233-241
    • Binga, E.K.1    Lasken, R.S.2    Neufeld, J.D.3
  • 12
    • 78650591665 scopus 로고    scopus 로고
    • Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
    • Siegl, A. et al. Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J. 5, 61-70 (2011).
    • (2011) ISME J. , vol.5 , pp. 61-70
    • Siegl, A.1
  • 13
    • 79954503621 scopus 로고    scopus 로고
    • Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage
    • Grindberg, R. V. et al. Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage. PLoS ONE 6, e18565 (2011).
    • (2011) PLoS ONE , vol.6
    • Grindberg, R.V.1
  • 14
    • 0029794187 scopus 로고    scopus 로고
    • Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts
    • Bewley, C. A., Holland, N. D. & Faulkner, D. J. Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts. Experientia 52, 716-722 (1996).
    • (1996) Experientia , vol.52 , pp. 716-722
    • Bewley, C.A.1    Holland, N.D.2    Faulkner, D.J.3
  • 15
    • 0000693758 scopus 로고    scopus 로고
    • Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel d-proteobacterium, " Candidatus Entotheonella palauensis"
    • Schmidt, E. W., Obraztsova, A. Y., Davidson, S. K., Faulkner, D. J. & Haygood, M. G. Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel d-proteobacterium, "Candidatus Entotheonella palauensis". Mar. Biol. 136, 969-977 (2000).
    • (2000) Mar. Biol. , vol.136 , pp. 969-977
    • Schmidt, E.W.1    Obraztsova, A.Y.2    Davidson, S.K.3    Faulkner, D.J.4    Haygood, M.G.5
  • 16
    • 20444418081 scopus 로고    scopus 로고
    • Genomic DNA amplification from a single bacterium
    • Raghunathan, A. et al. Genomic DNA amplification from a single bacterium. Appl. Environ. Microbiol. 71, 3342-3347 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3342-3347
    • Raghunathan, A.1
  • 17
    • 84881138595 scopus 로고    scopus 로고
    • Insights into the phylogeny and coding potential of microbial dark matter
    • Rinke, C. et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-437 (2013).
    • (2013) Nature , vol.499 , pp. 431-437
    • Rinke, C.1
  • 18
    • 80054732674 scopus 로고    scopus 로고
    • Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
    • Chitsaz, H. et al. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nature Biotechnol. 29, 915-921 (2011).
    • (2011) Nature Biotechnol. , vol.29 , pp. 915-921
    • Chitsaz, H.1
  • 19
    • 33748631825 scopus 로고    scopus 로고
    • Assembly-line enzymology for polyketide and nonribosomalpeptide antibiotics:Logic, machinery, and mechanisms
    • Fischbach, M. A. & Walsh, C. T. Assembly-line enzymology for polyketide and nonribosomalpeptide antibiotics:Logic, machinery, and mechanisms. Chem. Rev. 106, 3468-3496 (2006).
    • (2006) Chem. Rev. , vol.106 , pp. 3468-3496
    • Fischbach, M.A.1    Walsh, C.T.2
  • 20
    • 0033179468 scopus 로고    scopus 로고
    • The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
    • Stachelhaus, T., Mootz, H. D. & Marahiel, M. A. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. Chem. Biol. 6, 493-505 (1999).
    • (1999) Chem. Biol. , vol.6 , pp. 493-505
    • Stachelhaus, T.1    Mootz, H.D.2    Marahiel, M.A.3
  • 21
    • 0034013269 scopus 로고    scopus 로고
    • Structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains
    • Challis, G. L., Ravel, J. & Townsend, C. A. Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains. Chem. Biol. 7, 211-224 (2000).
    • (2000) Chem. Biol. , vol.7 , pp. 211-224
    • Challis, G.L.1    Ravel, J.2    Predictive, A.T.C.3
  • 22
    • 79959936207 scopus 로고    scopus 로고
    • NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity
    • Rottig, M. et al. NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 39, W362-W367 (2011)
    • (2011) Nucleic Acids Res. , vol.39
    • Rottig, M.1
  • 23
    • 0025733727 scopus 로고
    • Konbamide, a novel peptide with calmoduiin antagonistic activity from the Okinawan marine sponge Theonella sp
    • Kobayashi, J.I. et al. Konbamide, a novel peptide with calmoduiin antagonistic activity from the Okinawan marine sponge Theonella sp. J. Chem. Soc. Chem. Commun. 1050-1052 (1991).
    • (1991) J. Chem. Soc. Chem. Commun. , pp. 1050-1052
    • Kobayashi, J.I.1
  • 24
    • 77952511174 scopus 로고    scopus 로고
    • Expansion of ribosomally produced natural products: A nitrile hydratase-and Nif11-related precursor family
    • Haft, D. H., Basu, M. K. & Mitchell, D. A. Expansion of ribosomally produced natural products: a nitrile hydratase-and Nif11-related precursor family. BMC Biol. 8, 70 (2010).
    • (2010) BMC Biol. , vol.8 , pp. 70
    • Haft, D.H.1    Basu, M.K.2    Mitchell, D.A.3
  • 25
    • 84862999012 scopus 로고    scopus 로고
    • Mass spectral molecular networking of living microbial colonies
    • Watrous, J. et al. Mass spectral molecular networking of living microbial colonies. Proc. Natl. Acad. Sci. USA 109, E1743-E1752 (2012)
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109
    • Watrous, J.1
  • 27
    • 80052595178 scopus 로고    scopus 로고
    • Mutation ofL-2, 3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus
    • Beasley, F. C., Cheung, J. & Heinrichs, D. E. Mutation ofL-2, 3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus. BMC Microbiol. 11, 199 (2011).
    • (2011) BMC Microbiol. , vol.11 , pp. 199
    • Beasley, F.C.1    Cheung, J.2    Heinrichs, D.E.3
  • 28
    • 40249103770 scopus 로고    scopus 로고
    • Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp
    • Bruck, W. M., Sennett, S. H., Pomponi, S. A., Willenz, P. & McCarthy, P. J. Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp. ISME J. 2, 335-339 (2008).
    • (2008) ISME J. , vol.2 , pp. 335-339
    • Bruck, W.M.1    Sennett, S.H.2    Pomponi, S.A.3    Willenz, P.4    McCarthy, P.J.5
  • 29
    • 78650019762 scopus 로고    scopus 로고
    • Linking chemical and microbial diversity in marine sponges: Possible role for poribacteria as producers of methyl-branched fatty acids
    • Hochmuth, T. et al. Linking chemical and microbial diversity in marine sponges: possible role for poribacteria as producers of methyl-branched fatty acids. Chem Bio Chem 11, 2572-2578 (2010).
    • (2010) Chem Bio Chem , vol.11 , pp. 2572-2578
    • Hochmuth, T.1
  • 30
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B. M. & Pace, N. R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180, 4765-4774 (1998).
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 31
    • 84875875462 scopus 로고    scopus 로고
    • The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer
    • Lucker, S., Nowka, B., Rattei, T., Spieck, E. & Daims, H. The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer. Front. Microbiol. 4, 27 (2013).
    • (2013) Front. Microbiol. , vol.4 , pp. 27
    • Lucker, S.1    Nowka, B.2    Rattei, T.3    Spieck, E.4    Daims, H.5
  • 32
    • 0028120134 scopus 로고
    • A brominated secondary metabolite synthesized by the cyanobacterial symbiont of a marine sponge and accumulation of the crystalline metabolite in the sponge tissue
    • Unson, M. D., Holland, N. D. & Faulkner, D. J. A brominated secondary metabolite synthesized by the cyanobacterial symbiont of a marine sponge and accumulation of the crystalline metabolite in the sponge tissue. Mar. Biol. 119, 1-11 (1994).
    • (1994) Mar. Biol. , vol.119 , pp. 1-11
    • Unson, M.D.1    Holland, N.D.2    Faulkner, D.J.3
  • 33
    • 0031868508 scopus 로고    scopus 로고
    • Cellular origin of chlorinated diketopiperazines in the dictyoceratid sponge Dysidea herbacea (Keller)
    • Flowers, A. E., Garson, M. J., Webb, R. I., Dumdei, E. J. & Charan, R. D. Cellular origin of chlorinated diketopiperazines in the dictyoceratid sponge Dysidea herbacea (Keller). Cell Tissue Res. 292, 597-607 (1998).
    • (1998) Cell Tissue Res. , vol.292 , pp. 597-607
    • Flowers, A.E.1    Garson, M.J.2    Webb, R.I.3    Dumdei, E.J.4    Charan, R.D.5
  • 34
    • 67650281479 scopus 로고    scopus 로고
    • Polyketide assembly linesof uncultivated sponge symbionts from structure-based gene targeting
    • Fisch, K. M. et al. Polyketide assembly linesof uncultivated sponge symbionts from structure-based gene targeting. Nature Chem. Biol. 5, 494-501 (2009).
    • (2009) Nature Chem. Biol. , vol.5 , pp. 494-501
    • Fisch, K.M.1
  • 35
    • 67749122311 scopus 로고    scopus 로고
    • Pederin-type pathways of uncultivated bacterial symbionts: Analysis of O-methyltransferases and generation of a biosynthetic hybrid
    • Zimmermann, K., Engeser, M., Blunt, J. W., Munro, M. H. & Piel, J. Pederin-type pathways of uncultivated bacterial symbionts: analysis of O-methyltransferases and generation of a biosynthetic hybrid. J. Am. Chem. Soc. 131, 2780-2781 (2009).
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 2780-2781
    • Zimmermann, K.1    Engeser, M.2    Blunt, J.W.3    Munro, M.H.4    Piel, J.5
  • 36
    • 84889650722 scopus 로고    scopus 로고
    • An enzymatic domain for cyclic ether formation in complex polyketides
    • Pöplau, P., Frank, S., Morinaka, B. I. & Piel, J. An enzymatic domain for cyclic ether formation in complex polyketides. Angew. Chem. Int. Ed. 52, 13215-13218 (2013).
    • (2013) Angew. Chem. Int. Ed. , vol.52 , pp. 13215-13218
    • Pöplau, P.1    Frank, S.2    Morinaka, B.I.3    Piel, J.4
  • 37
    • 23744472955 scopus 로고    scopus 로고
    • Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
    • Schirmer, A. et al. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Appl. Environ. Microbiol. 71, 4840-4849 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4840-4849
    • Schirmer, A.1
  • 38
    • 0037046560 scopus 로고    scopus 로고
    • Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2)
    • Bentley, S. D. et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2). Nature 417, 141-147 (2002).
    • (2002) Nature , vol.417 , pp. 141-147
    • Bentley, S.D.1
  • 39
    • 0035834039 scopus 로고    scopus 로고
    • Genome sequence of an industrial microorganism Streptomyces avermitilis: Deducing the ability of producing secondary metabolites
    • Omura, S. et al. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc. Natl. Acad. Sci. USA 98, 12215-12220 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 12215-12220
    • Omura, S.1
  • 40
    • 35948983363 scopus 로고    scopus 로고
    • Complete genome sequence of the myxobacterium Sorangium cellulosum
    • Schneiker, S. et al. Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnol. 25, 1281-1289 (2007).
    • (2007) Nature Biotechnol. , vol.25 , pp. 1281-1289
    • Schneiker, S.1
  • 41
    • 46649118468 scopus 로고    scopus 로고
    • Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium
    • Frangeul, L. et al. Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium. BMC Genomics 9, 274 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 274
    • Frangeul, L.1
  • 42
    • 73949145723 scopus 로고    scopus 로고
    • Compartmentalized function through cell differentiation in filamentous cyanobacteria
    • Flores, E. & Herrero, A. Compartmentalized function through cell differentiation in filamentous cyanobacteria. Nature Rev. Microbiol. 8, 39-50 (2010).
    • (2010) Nature Rev. Microbiol. , vol.8 , pp. 39-50
    • Flores, E.1    Herrero, A.2
  • 43
    • 79951816421 scopus 로고    scopus 로고
    • Characterization of the 'pristinamycin supercluster' of Streptomyces pristinaespiralis
    • Mast, Y. et al. Characterization of the 'pristinamycin supercluster' of Streptomyces pristinaespiralis. Microb. Biotechnol. 4, 192-206 (2011).
    • (2011) Microb. Biotechnol. , vol.4 , pp. 192-206
    • Mast, Y.1
  • 44
    • 40549120596 scopus 로고    scopus 로고
    • The RAST server: Rapid annotations using subsystems technology
    • Aziz, R. K. et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9, 75-89 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 75-89
    • Aziz, R.K.1
  • 45
    • 79959920872 scopus 로고    scopus 로고
    • AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
    • Medema, M. H. et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 39, W339-W346 (2011).
    • (2011) Nucleic Acids Res. , vol.39
    • Medema, M.H.1
  • 46
    • 64249084052 scopus 로고    scopus 로고
    • Chapter8.Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data
    • Bachmann, B. O. & Ravel, J. Chapter8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods Enzymol. 458, 181-217 (2009).
    • (2009) Methods Enzymol. , vol.458 , pp. 181-217
    • Bachmann, B.O.1    Ravel, J.2
  • 47
    • 84875595569 scopus 로고    scopus 로고
    • EMZed:anopen source frameworkin Python for rapid and interactive development of LC/MS data analysis workflows
    • Kiefer, P., Schmitt, U. & Vorholt, J. A. eMZed:anopen source frameworkin Python for rapid and interactive development of LC/MS data analysis workflows. Bioinformatics 29, 963-964 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 963-964
    • Kiefer, P.1    Schmitt, U.2    Vorholt, J.A.3
  • 48
    • 0015291895 scopus 로고
    • Synthesis of RNA by dissociated cells of the sea urchin embryo
    • Spiegel, M. & Rubinstein, N. A. Synthesis of RNA by dissociated cells of the sea urchin embryo. Exp. Cell Res. 70, 423-430 (1972).
    • (1972) Exp. Cell Res. , vol.70 , pp. 423-430
    • Spiegel, M.1    Rubinstein, N.A.2
  • 49
    • 77949515650 scopus 로고    scopus 로고
    • R2cat: Synteny plots and comparative assembly
    • Husemann, P. & Stoye, J. r2cat: synteny plots and comparative assembly. Bioinformatics 26, 570-571 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 570-571
    • Husemann, P.1    Stoye, J.2
  • 50
    • 0035062712 scopus 로고    scopus 로고
    • Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola
    • Hentschel, U. et al. Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. FEMS Microbiol. Ecol. 35, 305-312 (2001).
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 305-312
    • Hentschel, U.1
  • 51
    • 0037195174 scopus 로고    scopus 로고
    • A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles
    • Piel, J. A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles. Proc. Natl. Acad. Sci. USA 99, 14002-14007 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 14002-14007
    • Piel, J.1
  • 53
    • 84864134721 scopus 로고    scopus 로고
    • SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
    • Pruesse, E., Peplies, J. & Glockner, F. O. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823-1829 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1823-1829
    • Pruesse, E.1    Peplies, J.2    Glockner, F.O.3
  • 54
    • 2542523843 scopus 로고    scopus 로고
    • ARB: A software environment for sequence data
    • Ludwig, W. et al. ARB: a software environment for sequence data. Nucleic Acids Res. 32, 1363-1371 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1363-1371
    • Ludwig, W.1
  • 55
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and alignedribosomal RNA sequence data compatible with ARB
    • Pruesse, E. et al. SILVA: a comprehensive online resource for quality checked and alignedribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35, 7188-7196 (2007).
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7188-7196
    • Pruesse, E.1
  • 56
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated profile HMM searches
    • Eddy, S. R. Accelerated profile HMM searches. PLOS Comput. Biol. 7, e1002195 (2011).
    • (2011) PLOS Comput. Biol. , vol.7
    • Eddy, S.R.1
  • 57
    • 77949718257 scopus 로고    scopus 로고
    • Fast Tree 2-approximately maximum-likelihood trees for large alignments
    • Price, M. N., Dehal, P. S. & Arkin, A. P. Fast Tree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5, e9490 (2010).
    • (2010) PLoS ONE , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 58
    • 84865146139 scopus 로고    scopus 로고
    • RAxML-Light: A tool for computing terabyte phylogenies
    • Stamatakis, A. et al. RAxML-Light: a tool for computing terabyte phylogenies. Bioinformatics 28, 2064-2066 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 2064-2066
    • Stamatakis, A.1
  • 59
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixedmodels
    • Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixedmodels. Bioinformatics 22, 2688-2690 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 60
    • 84872734321 scopus 로고    scopus 로고
    • Structural basis of the interaction of MbtH-like proteins, putative regulators of nonribosomal peptide biosynthesis, with adenylating enzymes
    • Herbst, D. A., Boll, B., Zocher, G., Stehle, T. & Heide, L. Structural basis of the interaction of MbtH-like proteins, putative regulators of nonribosomal peptide biosynthesis, with adenylating enzymes. J. Biol. Chem. 288, 1991-2003 (2013).
    • (2013) J. Biol. Chem. , vol.288 , pp. 1991-2003
    • Herbst, D.A.1    Boll, B.2    Zocher, G.3    Stehle, T.4    Heide, L.5
  • 61
    • 84873336552 scopus 로고    scopus 로고
    • Non-ribosomal propeptide precursor in nocardicin A biosynthesis predicted from adenylation domain specificity dependent on the MbtH family protein Noc i
    • Davidsen, J. M., Bartley, D. M. & Townsend, C. A. Non-ribosomal propeptide precursor in nocardicin A biosynthesis predicted from adenylation domain specificity dependent on the MbtH family protein Noc I. J. Am. Chem. Soc. 135, 1749-1759 (2013).
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 1749-1759
    • Davidsen, J.M.1    Bartley, D.M.2    Townsend, C.A.3
  • 62
    • 79953058897 scopus 로고    scopus 로고
    • Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite
    • Hofer, I. et al. Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite. Chem. Biol. 18, 381-391 (2011)
    • (2011) Chem. Biol. , vol.18 , pp. 381-391
    • Hofer, I.1
  • 63
    • 84876714094 scopus 로고    scopus 로고
    • Evolution-guided engineering of nonribosomal peptide synthetase adenylation domains
    • Crüsemann, M., Kohlhaas, C. & Piel, J. Evolution-guided engineering of nonribosomal peptide synthetase adenylation domains. Chemical Sci. 4, 1041-1045 (2013).
    • (2013) Chemical Sci. , vol.4 , pp. 1041-1045
    • Crüsemann, M.1    Kohlhaas, C.2    Piel, J.3
  • 64
    • 38649109810 scopus 로고    scopus 로고
    • Clustering millions of tandem mass spectra
    • Frank, A. M. et al. Clustering millions of tandem mass spectra. J. Proteome Res. 7, 113-122 (2008).
    • (2008) J. Proteome Res. , vol.7 , pp. 113-122
    • Frank, A.M.1
  • 66
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.