-
1
-
-
19644393308
-
Bioactive microbial metabolites-A personal view
-
Berdy, J. Bioactive microbial metabolites-a personal view. J. Antibiot. 58, 1-26 (2005).
-
(2005)
J. Antibiot.
, vol.58
, pp. 1-26
-
-
Berdy, J.1
-
2
-
-
43849089834
-
Microbial diversity and the genetic natureofmicrobial species
-
Achtman, M. & Wagner, M. Microbial diversity and the genetic natureofmicrobial species. Nature Rev. Microbiol. 6, 431-440 (2008).
-
(2008)
Nature Rev. Microbiol.
, vol.6
, pp. 431-440
-
-
Achtman, M.1
Wagner, M.2
-
3
-
-
70350230400
-
Metagenomic approaches to natural products from free-living and symbiotic organisms
-
Brady, S. F., Simmons, L., Kim, J. H. & Schmidt, E. W. Metagenomic approaches to natural products from free-living and symbiotic organisms. Nat. Prod. Rep. 26, 1488-1503 (2009).
-
(2009)
Nat. Prod. Rep.
, vol.26
, pp. 1488-1503
-
-
Brady, S.F.1
Simmons, L.2
Kim, J.H.3
Schmidt, E.W.4
-
4
-
-
80053243567
-
Approaches to capturing and designing biologically active small molecules produced by uncultured microbes
-
Piel, J. Approaches to capturing and designing biologically active small molecules produced by uncultured microbes. Annu. Rev. Microbiol. 65, 431-453 (2011).
-
(2011)
Annu. Rev. Microbiol.
, vol.65
, pp. 431-453
-
-
Piel, J.1
-
5
-
-
9244230571
-
Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont ofthe marine sponge Theonella swinhoei
-
Piel, J. et al. Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont ofthe marine sponge Theonella swinhoei. Proc. Natl. Acad. Sci. USA 101, 16222-16227 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 16222-16227
-
-
Piel, J.1
-
6
-
-
85027943237
-
Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides
-
Freeman, M. F. et al. Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides. Science 338, 387-390 (2012).
-
(2012)
Science
, vol.338
, pp. 387-390
-
-
Freeman, M.F.1
-
7
-
-
0036729439
-
Molecular evidence for a uniform microbial community in sponges from different oceans
-
Hentschel, U. et al. Molecular evidence for a uniform microbial community in sponges from different oceans. Appl. Environ. Microbiol. 68, 4431-4440 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4431-4440
-
-
Hentschel, U.1
-
8
-
-
34250733462
-
Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential
-
Taylor, M. W., Radax, R., Steger, D. & Wagner, M. Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol. Mol. Biol. Rev. 71, 295-347 (2007).
-
(2007)
Microbiol. Mol. Biol. Rev.
, vol.71
, pp. 295-347
-
-
Taylor, M.W.1
Radax, R.2
Steger, D.3
Wagner, M.4
-
9
-
-
84865168402
-
Genomic insights into the marine sponge microbiome
-
Hentschel, U., Piel, J., Degnan, S. M. & Taylor, M. W. Genomic insights into the marine sponge microbiome. Nature Rev. Microbiol. 10, 641-654 (2012).
-
(2012)
Nature Rev. Microbiol.
, vol.10
, pp. 641-654
-
-
Hentschel, U.1
Piel, J.2
Degnan, S.M.3
Taylor, M.W.4
-
10
-
-
0000915203
-
Bioactive sponge peptides
-
Fusetani, N. & Matsunaga, S. Bioactive sponge peptides. Chem. Rev. 93, 1793-1806 (1993).
-
(1993)
Chem. Rev.
, vol.93
, pp. 1793-1806
-
-
Fusetani, N.1
Matsunaga, S.2
-
11
-
-
40249095175
-
Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology
-
Binga, E. K., Lasken, R. S. & Neufeld, J. D. Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology. ISME J. 2, 233-241 (2008).
-
(2008)
ISME J.
, vol.2
, pp. 233-241
-
-
Binga, E.K.1
Lasken, R.S.2
Neufeld, J.D.3
-
12
-
-
78650591665
-
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges
-
Siegl, A. et al. Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J. 5, 61-70 (2011).
-
(2011)
ISME J.
, vol.5
, pp. 61-70
-
-
Siegl, A.1
-
13
-
-
79954503621
-
Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage
-
Grindberg, R. V. et al. Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage. PLoS ONE 6, e18565 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Grindberg, R.V.1
-
14
-
-
0029794187
-
Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts
-
Bewley, C. A., Holland, N. D. & Faulkner, D. J. Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts. Experientia 52, 716-722 (1996).
-
(1996)
Experientia
, vol.52
, pp. 716-722
-
-
Bewley, C.A.1
Holland, N.D.2
Faulkner, D.J.3
-
15
-
-
0000693758
-
Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel d-proteobacterium, " Candidatus Entotheonella palauensis"
-
Schmidt, E. W., Obraztsova, A. Y., Davidson, S. K., Faulkner, D. J. & Haygood, M. G. Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel d-proteobacterium, "Candidatus Entotheonella palauensis". Mar. Biol. 136, 969-977 (2000).
-
(2000)
Mar. Biol.
, vol.136
, pp. 969-977
-
-
Schmidt, E.W.1
Obraztsova, A.Y.2
Davidson, S.K.3
Faulkner, D.J.4
Haygood, M.G.5
-
16
-
-
20444418081
-
Genomic DNA amplification from a single bacterium
-
Raghunathan, A. et al. Genomic DNA amplification from a single bacterium. Appl. Environ. Microbiol. 71, 3342-3347 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3342-3347
-
-
Raghunathan, A.1
-
17
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C. et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-437 (2013).
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
-
18
-
-
80054732674
-
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
-
Chitsaz, H. et al. Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nature Biotechnol. 29, 915-921 (2011).
-
(2011)
Nature Biotechnol.
, vol.29
, pp. 915-921
-
-
Chitsaz, H.1
-
19
-
-
33748631825
-
Assembly-line enzymology for polyketide and nonribosomalpeptide antibiotics:Logic, machinery, and mechanisms
-
Fischbach, M. A. & Walsh, C. T. Assembly-line enzymology for polyketide and nonribosomalpeptide antibiotics:Logic, machinery, and mechanisms. Chem. Rev. 106, 3468-3496 (2006).
-
(2006)
Chem. Rev.
, vol.106
, pp. 3468-3496
-
-
Fischbach, M.A.1
Walsh, C.T.2
-
20
-
-
0033179468
-
The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
-
Stachelhaus, T., Mootz, H. D. & Marahiel, M. A. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. Chem. Biol. 6, 493-505 (1999).
-
(1999)
Chem. Biol.
, vol.6
, pp. 493-505
-
-
Stachelhaus, T.1
Mootz, H.D.2
Marahiel, M.A.3
-
21
-
-
0034013269
-
Structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains
-
Challis, G. L., Ravel, J. & Townsend, C. A. Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains. Chem. Biol. 7, 211-224 (2000).
-
(2000)
Chem. Biol.
, vol.7
, pp. 211-224
-
-
Challis, G.L.1
Ravel, J.2
Predictive, A.T.C.3
-
22
-
-
79959936207
-
NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity
-
Rottig, M. et al. NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 39, W362-W367 (2011)
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Rottig, M.1
-
23
-
-
0025733727
-
Konbamide, a novel peptide with calmoduiin antagonistic activity from the Okinawan marine sponge Theonella sp
-
Kobayashi, J.I. et al. Konbamide, a novel peptide with calmoduiin antagonistic activity from the Okinawan marine sponge Theonella sp. J. Chem. Soc. Chem. Commun. 1050-1052 (1991).
-
(1991)
J. Chem. Soc. Chem. Commun.
, pp. 1050-1052
-
-
Kobayashi, J.I.1
-
24
-
-
77952511174
-
Expansion of ribosomally produced natural products: A nitrile hydratase-and Nif11-related precursor family
-
Haft, D. H., Basu, M. K. & Mitchell, D. A. Expansion of ribosomally produced natural products: a nitrile hydratase-and Nif11-related precursor family. BMC Biol. 8, 70 (2010).
-
(2010)
BMC Biol.
, vol.8
, pp. 70
-
-
Haft, D.H.1
Basu, M.K.2
Mitchell, D.A.3
-
25
-
-
84862999012
-
Mass spectral molecular networking of living microbial colonies
-
Watrous, J. et al. Mass spectral molecular networking of living microbial colonies. Proc. Natl. Acad. Sci. USA 109, E1743-E1752 (2012)
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
-
-
Watrous, J.1
-
27
-
-
80052595178
-
Mutation ofL-2, 3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus
-
Beasley, F. C., Cheung, J. & Heinrichs, D. E. Mutation ofL-2, 3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus. BMC Microbiol. 11, 199 (2011).
-
(2011)
BMC Microbiol.
, vol.11
, pp. 199
-
-
Beasley, F.C.1
Cheung, J.2
Heinrichs, D.E.3
-
28
-
-
40249103770
-
Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp
-
Bruck, W. M., Sennett, S. H., Pomponi, S. A., Willenz, P. & McCarthy, P. J. Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp. ISME J. 2, 335-339 (2008).
-
(2008)
ISME J.
, vol.2
, pp. 335-339
-
-
Bruck, W.M.1
Sennett, S.H.2
Pomponi, S.A.3
Willenz, P.4
McCarthy, P.J.5
-
29
-
-
78650019762
-
Linking chemical and microbial diversity in marine sponges: Possible role for poribacteria as producers of methyl-branched fatty acids
-
Hochmuth, T. et al. Linking chemical and microbial diversity in marine sponges: possible role for poribacteria as producers of methyl-branched fatty acids. Chem Bio Chem 11, 2572-2578 (2010).
-
(2010)
Chem Bio Chem
, vol.11
, pp. 2572-2578
-
-
Hochmuth, T.1
-
30
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., Goebel, B. M. & Pace, N. R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180, 4765-4774 (1998).
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
31
-
-
84875875462
-
The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer
-
Lucker, S., Nowka, B., Rattei, T., Spieck, E. & Daims, H. The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer. Front. Microbiol. 4, 27 (2013).
-
(2013)
Front. Microbiol.
, vol.4
, pp. 27
-
-
Lucker, S.1
Nowka, B.2
Rattei, T.3
Spieck, E.4
Daims, H.5
-
32
-
-
0028120134
-
A brominated secondary metabolite synthesized by the cyanobacterial symbiont of a marine sponge and accumulation of the crystalline metabolite in the sponge tissue
-
Unson, M. D., Holland, N. D. & Faulkner, D. J. A brominated secondary metabolite synthesized by the cyanobacterial symbiont of a marine sponge and accumulation of the crystalline metabolite in the sponge tissue. Mar. Biol. 119, 1-11 (1994).
-
(1994)
Mar. Biol.
, vol.119
, pp. 1-11
-
-
Unson, M.D.1
Holland, N.D.2
Faulkner, D.J.3
-
33
-
-
0031868508
-
Cellular origin of chlorinated diketopiperazines in the dictyoceratid sponge Dysidea herbacea (Keller)
-
Flowers, A. E., Garson, M. J., Webb, R. I., Dumdei, E. J. & Charan, R. D. Cellular origin of chlorinated diketopiperazines in the dictyoceratid sponge Dysidea herbacea (Keller). Cell Tissue Res. 292, 597-607 (1998).
-
(1998)
Cell Tissue Res.
, vol.292
, pp. 597-607
-
-
Flowers, A.E.1
Garson, M.J.2
Webb, R.I.3
Dumdei, E.J.4
Charan, R.D.5
-
34
-
-
67650281479
-
Polyketide assembly linesof uncultivated sponge symbionts from structure-based gene targeting
-
Fisch, K. M. et al. Polyketide assembly linesof uncultivated sponge symbionts from structure-based gene targeting. Nature Chem. Biol. 5, 494-501 (2009).
-
(2009)
Nature Chem. Biol.
, vol.5
, pp. 494-501
-
-
Fisch, K.M.1
-
35
-
-
67749122311
-
Pederin-type pathways of uncultivated bacterial symbionts: Analysis of O-methyltransferases and generation of a biosynthetic hybrid
-
Zimmermann, K., Engeser, M., Blunt, J. W., Munro, M. H. & Piel, J. Pederin-type pathways of uncultivated bacterial symbionts: analysis of O-methyltransferases and generation of a biosynthetic hybrid. J. Am. Chem. Soc. 131, 2780-2781 (2009).
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 2780-2781
-
-
Zimmermann, K.1
Engeser, M.2
Blunt, J.W.3
Munro, M.H.4
Piel, J.5
-
36
-
-
84889650722
-
An enzymatic domain for cyclic ether formation in complex polyketides
-
Pöplau, P., Frank, S., Morinaka, B. I. & Piel, J. An enzymatic domain for cyclic ether formation in complex polyketides. Angew. Chem. Int. Ed. 52, 13215-13218 (2013).
-
(2013)
Angew. Chem. Int. Ed.
, vol.52
, pp. 13215-13218
-
-
Pöplau, P.1
Frank, S.2
Morinaka, B.I.3
Piel, J.4
-
37
-
-
23744472955
-
Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
-
Schirmer, A. et al. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Appl. Environ. Microbiol. 71, 4840-4849 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 4840-4849
-
-
Schirmer, A.1
-
38
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2)
-
Bentley, S. D. et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3 (2). Nature 417, 141-147 (2002).
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
-
39
-
-
0035834039
-
Genome sequence of an industrial microorganism Streptomyces avermitilis: Deducing the ability of producing secondary metabolites
-
Omura, S. et al. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc. Natl. Acad. Sci. USA 98, 12215-12220 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 12215-12220
-
-
Omura, S.1
-
40
-
-
35948983363
-
Complete genome sequence of the myxobacterium Sorangium cellulosum
-
Schneiker, S. et al. Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnol. 25, 1281-1289 (2007).
-
(2007)
Nature Biotechnol.
, vol.25
, pp. 1281-1289
-
-
Schneiker, S.1
-
41
-
-
46649118468
-
Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium
-
Frangeul, L. et al. Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium. BMC Genomics 9, 274 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 274
-
-
Frangeul, L.1
-
42
-
-
73949145723
-
Compartmentalized function through cell differentiation in filamentous cyanobacteria
-
Flores, E. & Herrero, A. Compartmentalized function through cell differentiation in filamentous cyanobacteria. Nature Rev. Microbiol. 8, 39-50 (2010).
-
(2010)
Nature Rev. Microbiol.
, vol.8
, pp. 39-50
-
-
Flores, E.1
Herrero, A.2
-
43
-
-
79951816421
-
Characterization of the 'pristinamycin supercluster' of Streptomyces pristinaespiralis
-
Mast, Y. et al. Characterization of the 'pristinamycin supercluster' of Streptomyces pristinaespiralis. Microb. Biotechnol. 4, 192-206 (2011).
-
(2011)
Microb. Biotechnol.
, vol.4
, pp. 192-206
-
-
Mast, Y.1
-
44
-
-
40549120596
-
The RAST server: Rapid annotations using subsystems technology
-
Aziz, R. K. et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9, 75-89 (2008).
-
(2008)
BMC Genomics
, vol.9
, pp. 75-89
-
-
Aziz, R.K.1
-
45
-
-
79959920872
-
AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema, M. H. et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 39, W339-W346 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Medema, M.H.1
-
46
-
-
64249084052
-
Chapter8.Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data
-
Bachmann, B. O. & Ravel, J. Chapter8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods Enzymol. 458, 181-217 (2009).
-
(2009)
Methods Enzymol.
, vol.458
, pp. 181-217
-
-
Bachmann, B.O.1
Ravel, J.2
-
47
-
-
84875595569
-
EMZed:anopen source frameworkin Python for rapid and interactive development of LC/MS data analysis workflows
-
Kiefer, P., Schmitt, U. & Vorholt, J. A. eMZed:anopen source frameworkin Python for rapid and interactive development of LC/MS data analysis workflows. Bioinformatics 29, 963-964 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 963-964
-
-
Kiefer, P.1
Schmitt, U.2
Vorholt, J.A.3
-
48
-
-
0015291895
-
Synthesis of RNA by dissociated cells of the sea urchin embryo
-
Spiegel, M. & Rubinstein, N. A. Synthesis of RNA by dissociated cells of the sea urchin embryo. Exp. Cell Res. 70, 423-430 (1972).
-
(1972)
Exp. Cell Res.
, vol.70
, pp. 423-430
-
-
Spiegel, M.1
Rubinstein, N.A.2
-
49
-
-
77949515650
-
R2cat: Synteny plots and comparative assembly
-
Husemann, P. & Stoye, J. r2cat: synteny plots and comparative assembly. Bioinformatics 26, 570-571 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 570-571
-
-
Husemann, P.1
Stoye, J.2
-
50
-
-
0035062712
-
Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola
-
Hentschel, U. et al. Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. FEMS Microbiol. Ecol. 35, 305-312 (2001).
-
(2001)
FEMS Microbiol. Ecol.
, vol.35
, pp. 305-312
-
-
Hentschel, U.1
-
51
-
-
0037195174
-
A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles
-
Piel, J. A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles. Proc. Natl. Acad. Sci. USA 99, 14002-14007 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14002-14007
-
-
Piel, J.1
-
52
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
53
-
-
84864134721
-
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
-
Pruesse, E., Peplies, J. & Glockner, F. O. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28, 1823-1829 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 1823-1829
-
-
Pruesse, E.1
Peplies, J.2
Glockner, F.O.3
-
54
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W. et al. ARB: a software environment for sequence data. Nucleic Acids Res. 32, 1363-1371 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
55
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and alignedribosomal RNA sequence data compatible with ARB
-
Pruesse, E. et al. SILVA: a comprehensive online resource for quality checked and alignedribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35, 7188-7196 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
-
56
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy, S. R. Accelerated profile HMM searches. PLOS Comput. Biol. 7, e1002195 (2011).
-
(2011)
PLOS Comput. Biol.
, vol.7
-
-
Eddy, S.R.1
-
57
-
-
77949718257
-
Fast Tree 2-approximately maximum-likelihood trees for large alignments
-
Price, M. N., Dehal, P. S. & Arkin, A. P. Fast Tree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5, e9490 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
58
-
-
84865146139
-
RAxML-Light: A tool for computing terabyte phylogenies
-
Stamatakis, A. et al. RAxML-Light: a tool for computing terabyte phylogenies. Bioinformatics 28, 2064-2066 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 2064-2066
-
-
Stamatakis, A.1
-
59
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixedmodels
-
Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixedmodels. Bioinformatics 22, 2688-2690 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
60
-
-
84872734321
-
Structural basis of the interaction of MbtH-like proteins, putative regulators of nonribosomal peptide biosynthesis, with adenylating enzymes
-
Herbst, D. A., Boll, B., Zocher, G., Stehle, T. & Heide, L. Structural basis of the interaction of MbtH-like proteins, putative regulators of nonribosomal peptide biosynthesis, with adenylating enzymes. J. Biol. Chem. 288, 1991-2003 (2013).
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 1991-2003
-
-
Herbst, D.A.1
Boll, B.2
Zocher, G.3
Stehle, T.4
Heide, L.5
-
61
-
-
84873336552
-
Non-ribosomal propeptide precursor in nocardicin A biosynthesis predicted from adenylation domain specificity dependent on the MbtH family protein Noc i
-
Davidsen, J. M., Bartley, D. M. & Townsend, C. A. Non-ribosomal propeptide precursor in nocardicin A biosynthesis predicted from adenylation domain specificity dependent on the MbtH family protein Noc I. J. Am. Chem. Soc. 135, 1749-1759 (2013).
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 1749-1759
-
-
Davidsen, J.M.1
Bartley, D.M.2
Townsend, C.A.3
-
62
-
-
79953058897
-
Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite
-
Hofer, I. et al. Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite. Chem. Biol. 18, 381-391 (2011)
-
(2011)
Chem. Biol.
, vol.18
, pp. 381-391
-
-
Hofer, I.1
-
63
-
-
84876714094
-
Evolution-guided engineering of nonribosomal peptide synthetase adenylation domains
-
Crüsemann, M., Kohlhaas, C. & Piel, J. Evolution-guided engineering of nonribosomal peptide synthetase adenylation domains. Chemical Sci. 4, 1041-1045 (2013).
-
(2013)
Chemical Sci.
, vol.4
, pp. 1041-1045
-
-
Crüsemann, M.1
Kohlhaas, C.2
Piel, J.3
-
64
-
-
38649109810
-
Clustering millions of tandem mass spectra
-
Frank, A. M. et al. Clustering millions of tandem mass spectra. J. Proteome Res. 7, 113-122 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 113-122
-
-
Frank, A.M.1
-
65
-
-
34249826390
-
Protein identification by spectral networks analysis
-
Bandeira, N., Tsur, D., Frank, A. & Pevzner, P. A. Protein identification by spectral networks analysis. Proc. Natl. Acad. Sci. USA 104, 6140-6145 (2007).
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 6140-6145
-
-
Bandeira, N.1
Tsur, D.2
Frank, A.3
Pevzner, P.A.4
-
66
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon, P. et al. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
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