Erratum: Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (13150-13154) DOI: 10.1073/pnas.1515348112);Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants

Proceedings of the National Academy of Sciences of the United States of America

Volumn 112, Issue 43, 2015, Pages 13150-13154

  Sit, Clarissa S ^a   Ruzzini, Antonio C ^a   Van Arnam, Ethan B ^a   Ramadhar, Timothy R ^a   Currie, Cameron R ^b   Clardy, Jon ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Biosynthetic gene clusters; Chemical ecology; Horizontal gene transfer; Natural products; Symbiosis

Indexed keywords

ANT; APTEROSTIGMA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; FUNGUS GROWTH; GENE CLUSTER; GENE IDENTIFICATION; GENE LOCUS; GENETIC VARIABILITY; GENOMIC ISLAND; MOLECULE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDONOCARDIA; SYMBIONT; TRACHYMOLECULE MYRMEX CORNETZI; ACTINOBACTERIA; ANIMAL; BACTERIAL GENE; FUNGUS; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; PHYSIOLOGY; SYMBIOSIS;

ACTINOBACTERIA; ANIMALS; ANTS; FUNGI; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; SYMBIOSIS;

EID: 84945543989     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1521903112     Document Type: Erratum

References (33)

1. Schultz TR, Brady SG (2008) Major evolutionary transitions in ant agriculture. Proc Natl Acad Sci USA 105(14):5435-5440.
2. Cafaro MJ, et al. (2011) Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria. Proc Biol Sci 278(1713):1814-1822.
3. Schoenian I, et al. (2011) Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants. Proc Natl Acad Sci USA 108(5):1955-1960.
4. Oh DC, Poulsen M, Currie CR, Clardy J (2009) Dentigerumycin: A bacterial mediator of an ant-fungus symbiosis. Nat Chem Biol 5(6):391-393.
5. Eid J, et al. (2009) Real-time DNA sequencing from single polymerase molecules. Science 323(5910):133-138.
6. Chin CS, et al. (2013) Nonhybrid, finished microbial genome assemblies from longread SMRT sequencing data. Nat Methods 10(6):563-569.
7. Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106(45):19126-19131.
8. Blin K, et al. (2013) anti SMASH 2.0-A versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res 41(Web Server issue):W204-W212.
9. Waack S, et al. (2006) Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics 7:142.
10. Dhillon BK, et al. (2015) Island Viewer 3: More flexible, interactive genomic island discovery, visualization and analysis. Nucleic Acids Res 43(W1):W104-W108.
11. Neumann CS, et al. (2012) Biosynthesis of piperazic acid via N5-hydroxy-ornithine in Kutzneria spp. 744. Chem Bio Chem 13(7):972-976.
12. Muliandi A, et al. (2014) Biosynthesis of the 4-methyloxazoline-containing nonribosomal peptides, JBIR-34 and -35, in Streptomyces sp. Sp080513GE-23. Chem Biol 21(8):923-934.
13. Possoz C, Ribard C, Gagnat J, Pernodet JL, Guérineau M (2001) The integrative element pSAM2 from Streptomyces: Kinetics and mode of conjugal transfer. Mol Microbiol 42(1):159-166.
14. Caldera EJ, Currie CR (2012) The population structure of antibiotic-producing bacterial symbionts of Apterostigma dentigerum ants: Impacts of coevolution and multipartite symbiosis. Am Nat 180(5):604-617.
15. Dobrindt U, Hochhut B, Hentschel U, Hacker J (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2(5):414-424.
16. Miller ED, Kauffman CA, Jensen PR, Fenical W (2007) Piperazimycins: Cytotoxic hexadepsipeptides from a marine-derived bacterium of the genus Streptomyces. J Org Chem 72(2):323-330.
17. Choulet F, et al. (2006) Evolution of the terminal regions of the Streptomyces linear chromosome. Mol Biol Evol 23(12):2361-2369.
18. Penn K, et al. (2009) Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J 3(10):1193-1203.
19. Ziemert N, et al. (2014) Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora. Proc Natl Acad Sci USA 111(12):E1130-E1139.
20. Earl AM, et al. (2012) Whole-genome sequences of Bacillus subtilis and close relatives. J Bacteriol 194(9):2378-2379.
21. Fischbach MA, Walsh CT, Clardy J (2008) The evolution of gene collectives: How natural selection drives chemical innovation. Proc Natl Acad Sci USA 105(12): 4601-4608.
22. Medema MH, Cimermancic P, Sali A, Takano E, Fischbach MA (2014) A systematic computational analysis of biosynthetic gene cluster evolution: Lessons for engineering biosynthesis. PLOS Comput Biol 10(12):e1004016.
23. Bruker (2013) SAINT, version 3.80A (Bruker AXS Inc., Madison, WI).
24. Bruker (2012) SADABS, version 2012/1 (Bruker AXS Inc., Madison, WI).
25. Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr A 64(Pt 1): 112-122.
26. Sheldrick GM (2015) SHELXT - Integrated space-group and crystal-structure determination. Acta Crystallogr A Found Adv 71(Pt 1):3-8.
27. Parsons S, Flack HD, Wagner T (2013) Use of intensity quotients and differences in absolute structure refinement. Acta Crystallogr B Struct Sci Cryst Eng Mater 69(Pt 3): 249-259.
28. Kearse M, et al. (2012) Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28(12):1647-1649.
29. Robinson JT, et al. (2011) Integrative genomics viewer. Nat Biotechnol 29(1): 24-26.
30. Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J (2009) DNAPlotter: Circular and linear interactive genome visualization. Bioinformatics 25(1):119-120.
31. Aziz RK, et al. (2008) The RAST Server: Rapid annotations using subsystems technology. BMC Genomics 9:75.
32. Overbeek R, et al. (2014) The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 42(Database issue): D206-D214.
33. Camacho C, et al. (2009) BLAST+: Architecture and applications. BMC Bioinformatics 10:421.