The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

PLoS ONE

Volumn 7, Issue 3, 2012, Pages

  Ziemert, Nadine ^a   Podell, Sheila ^c   Penn, Kevin ^a   Badger, Jonathan H ^b   Allen, Eric ^c   Jensen, Paul R ^a  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^b J CRAIG VENTER INSTITUTE   (United States)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NONRIBOSOMAL PEPTIDE SYNTHETASE; POLYKETIDE SYNTHASE; PEPTIDE SYNTHASE;

ARTICLE; AUTOMATION; BACTERIAL GENOME; BIOINFORMATICS; CLASSIFICATION ALGORITHM; CONTROLLED STUDY; GENE; GENE SEQUENCE; GENETIC DATABASE; GENETIC VARIABILITY; GENOME ANALYSIS; METABOLITE; METAGENOMICS; NAPDOS WEB PORTAL; NATURAL PRODUCT DOMAIN SEEKER WEB PORTAL; NONHUMAN; NONRIBOSOMAL PEPTIDE SYNTHETASE GENE; PHYLOGENY; POLYKETIDE SYNTHASE GENE; PROTEIN DOMAIN; SEARCH ENGINE; BIOLOGY; COMPUTER; DNA SEQUENCE; GENETICS; GENOME; INTERNET; METABOLISM; METHODOLOGY; MICROBIOLOGY; NONRIBOSOMAL PEPTIDE SYNTHESIS; PROBABILITY; PROTEIN TERTIARY STRUCTURE; STATISTICAL MODEL; STREPTOMYCES;

COMPUTATIONAL BIOLOGY; COMPUTERS; GENETIC VARIATION; GENOME; INTERNET; LIKELIHOOD FUNCTIONS; MARKOV CHAINS; PEPTIDE BIOSYNTHESIS, NUCLEIC ACID-INDEPENDENT; PEPTIDE SYNTHASES; PHYLOGENY; POLYKETIDE SYNTHASES; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; STREPTOMYCES;

EID: 84859078407     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0034064     Document Type: Article

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