Diversity and isolation of rare actinomycetes: An overview

Critical Reviews in Microbiology

Volumn 39, Issue 3, 2013, Pages 256-294

  Tiwari, Kavita ^a   Gupta, Rajinder K ^a  

^a GURU GOBIND SINGH INDRAPRASTHA UNIVERSITY   (India)

Author keywords

Biodiscovery; Rare actinomycetes; Selective isolation; Symbiotic actinomycetes; Taxonomy

Indexed keywords

BACTERIAL DNA; HUMIC ACID; INORGANIC SALT;

ACTINOBACTERIA; BACTERIAL GENOME; BACTERIOPHAGE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CAVE; CULTURE MEDIUM; CULTURE TECHNIQUE; GENOME ANALYSIS; HYDROLYSIS; INVERTEBRATE; IRRADIATION; MARINE BACTERIUM; METAGENOME; MICROBIAL DIVERSITY; MICROHABITAT; NONHUMAN; PLANT; PRIORITY JOURNAL; REVIEW; SPECIES IDENTIFICATION; SYMBIOSIS;

ACTINOBACTERIA; SOIL MICROBIOLOGY;

EID: 84880534043     PISSN: 1040841X     EISSN: 15497828     Source Type: Journal    
DOI: 10.3109/1040841X.2012.709819     Document Type: Review

References (201)

1. Abdelmohsen UR, Pimentel-Elardo SM, Hanora A, Radwan M, Abou-El-Ela SH, Ahmed S, Hentschel U. (2010). Isolation, phylogenetic analysis and anti-infective activity screening of marine spongeassociated actinomycetes. Mar Drugs, 8, 399-412.
2. Alferova IV, Terekhova LP. (1988). Use of the method of enriching of soil samples with calcium carbonate for isolation of Actinomyces. Antibiot Khimioter, 33, 888-890.
3. Alves A, Santos O, Henriques I, Correia A. (2002). Evaluation of methods for molecular typing and identification of members of the genus Brevibacterium and other related species. FEMS Microbiol Lett, 213, 205-211.
4. An SY, Xiao T, Yokota A. (2009). Leifsonia lichenia sp. nov., isolated from lichen in Japan. J Gen Appl Microbiol, 55, 339-343.
5. Araújo WL, Marcon J, Maccheroni W Jr, Van Elsas JD, Van Vuurde JW, Azevedo JL. (2002). Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl Environ Microbiol, 68, 4906-4914
6. Baltz RH. (2006). Marcel Faber Roundtable: is our antibiotic pipeline unproductive because of starvation, constipation or lack of inspiration? J Ind Microbiol Biotechnol, 33, 507-513.
7. Baltz RH. (2007). Antimicrobials from actinomycetes: back to the future. Microbe, 2, 125-131.
8. Banik JJ, Craig JW, Calle PY, Brady SF. (2010). Tailoring enzyme-rich environmental DNA clones: a source of enzymes for generating libraries of unnatural natural products. J Am Chem Soc, 132, 15661-1567
9. Basilio A, González I, Vicente MF, Gorrochategui J, Cabello A, González A, Genilloud O. (2003). Patterns of antimicrobial activities from soil actinomycetes isolated under different conditions of pH and salinity. J Appl Microbiol, 95, 814-823.
10. BÉrdy J. (2005). Bioactive microbial metabolites. J Antibiot, 58, 1-26.
11. Brady SF, Chao CJ, Handelsman J, Clardy J. (2001). Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org Lett, 3, 1981-1984
12. Brady SF, Chao CJ, Clardy J. (2002). New natural product families from an environmental DNA (eDNA) gene cluster. J Am Chem Soc, 124, 9968-9969
13. Bredholt H, Fjaervik E, Johnsen G, Zotchev SB. (2008). Actinomycetes from sediments in the Trondheim fjord, Norway: diversity and biological activity. Mar Drugs, 6, 12-24.
14. Bredholdt H, Galatenko OA, Engelhardt K, Fjaervik E, Terekhova LP, Zotchev SB. (2007). Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity. Environ Microbiol, 9, 2756-2764
15. Bulina TI, Alferova IV, Terekhova LP. (1997). A novel approach to isolation of actinomycetes involving irradiation of soil samples with microwaves. Microbiology, 66, 231-234.
16. Bulina TI, Terekhova LP, Tiurin MV. (1998). Use of electrical impulses for selective isolation of actinomycetes f rom soil. Mikrobiologiia, 67, 556-560.
17. Bull AT, Stach JE. (2007). Marine actinobacteria: new opportunities for natural product search and discovery. Trends Microbiol, 15, 491-499.
18. Bull AT, Stach JE, Ward AC, Goodfellow M. (2005). Marine actinobacteria: perspectives, challenges, future directions. Antonie Van Leeuwenhoek, 87, 65-79.
19. Busti E, Monciardini P, Cavaletti L, Bamonte R, Lazzarini A, Sosio M, Donadio S. (2006). Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes. Microbiology (Reading, Engl), 152, 675-683.
20. Cho SH, Hwang CW, Chung HK, Yang CS. (1994). A new medium for the selective isolation of soil actinomycetes. K J Appl Microbiol Biotechnol, 22, 561-563.
21. Clardy J, Fischbach MA, Currie CR. (2009). The natural history of antibiotics. Curr Biol, 19, R437-R441
22. Coombs JT, Franco CM. (2003). Isolation and identification of actinobacteria from surface-sterilized wheat roots. Appl Environ Microbiol, 69, 5603-5608
23. Cross T. (1982). Actinomycetes: a continuing source of new metabolites. Dev Indust Microbiol, 23, 1-18.
24. Currie CR, Scott JA, Summerbell RC, Malloch D. (1999). Fungusgrowing ants use antibiotic-producing bacteria to control garden parasites. Nature, 398, 701-704.
25. D'Costa VM, McGrann KM, Hughes DW, Wright GD. (2006). Sampling the antibiotic resistome. Science, 311, 374-377.
26. Das S, Lyla PS, Khan SA. (2006). Marine microbial diversity and ecology: importance and future perspectives. Current Science, 90, 1325-1335
27. Davis KE, Joseph SJ, Janssen PH. (2005). Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Appl Environ Microbiol, 71, 826-834.
28. Ding Y, Huang Y, Ruan J, Gao Y. (2009). Selective isolation and diversity of acidophilic filamentous actinomycetes from acidic soils. Wei Sheng Wu Xue Bao, 49, 710-717.
29. Fenical W, Jensen PR. (2006). Developing a new resource for drug discovery: marine actinomycete bacteria. Nat Chem Biol, 2, 666-673.
30. Fischbach MA, Walsh CT. (2009). Antibiotics for emerging pathogens. Science, 325, 1089-1093
31. Galatenko OA, Terekhova LP. (1990). Isolation of antibiotic-producing Actinomycetes from soil samples exposed to UV light. Antibiot Khimioter, 35, 6-8.
32. Gallinger SJ, Rabenstein JD, Baker DD. (1995). Comparative study of chemoattractants for the isolation of motile-spored actinoplanetes. J Ind Microbiol Biotechnol, 15, 131-134.
33. Gathogo EW, Waugh AC, Peric-Concha N, Redpath MB, Long PF. (2004). Rapid detection of 'rare' actinomycetes in environmental samples. Biotechnol Lett, 26, 897-900.
34. Gillespie DE, Brady SF, Bettermann AD, Cianciotto NP, Liles MR, Rondon MR, Clardy J, Goodman RM, Handelsman J. (2002). Isolation of antibiotics turbomycin a and B from a metagenomic library of soil microbial DNA. Appl Environ Microbiol, 68, 4301-4306
35. Goodfellow M. (2010). Selective Isolation of Actinobacteria. In: Baltz RH, Davies J, Demain AL, eds. Manual of Industrial Microbiology and Biotechnology. Section 1: Isolation and Screening of Secondary Metabolites and Enzymes. Bull AT, Davies JE (section eds). Washington: ASM Press, 3, 13-27.
36. Goodfellow M, Williams E. (1986). New strategies for the selective isolation of industrially important bacteria. Biotechnol Genet Eng Rev, 4, 213-262.
37. Goodfellow M, O'Donnel AG. (1989). Search and discovery of industrially significant actinomycetes. In: Baumberg S, Hunter IS, Rhodes PM, eds. Microbial Products: New Approaches, Society for General Microbiology Symposium No. 44. Cambridge: Cambridge University Press, pp 343-383.
38. Groth I, Schumann P, Schütze B, Augsten K, Stackebrandt E. (2002). Knoellia sinensis gen. nov., sp. nov. and Knoellia subterranea sp. nov., two novel actinobacteria isolated from a cave. Int J Syst Evol Microbiol, 52, 77-84.
39. Groth I, Schumann P, Schuetze B, Augsten K, Kramer I, Stackebrandt E. (1999). Beutenbergia cavernae gen. nov., sp. nov., an L-lysinecontaining actinomycete isolated from a cave. Int J Syst Bacteriol, 49 Pt 4, 1733-1740
40. Hamaki T, Suzuki M, Fudou R, Jojima Y, Kajiura T, Tabuchi A, Sen K, Shibai H. (2005). Isolation of novel bacteria and actinomycetes using soil-extract agar medium. J Biosci Bioeng, 99, 485-492.
41. Harvey I, Cormier Y, Beaulieu C, Akimov VN, MÉriaux A, Duchaine C. (2001). Random amplified ribosomal DNA restriction analysis for rapid identification of thermophilic Actinomycete-like bacteria involved in hypersensitivity pneumonitis. Syst Appl Microbiol, 24, 277-284.
42. Hayakawa M. (1990). Studies on selective isolation methods and distribution of soil actinomycetes. Actinomycetol, 4, 103-112.
43. Hayakawa M. (1994). Selective isolation methods for rare actinomycetes (in Japanese). In: Hotta K, Horinouchi S, eds. Bioscience and Actinomycetes. Tokyo: Igakusyuppan Center, pp 219-229.
44. Hayakawa M. (2003). Selective isolation of rare actinomycetes genera using pretreatment techniques. In: Kurtböke I, ed. Selective Isolation of Rare Actinomycetes. Queensland Complete Printing Service, Nambour, Australia. pp 55-81.
45. Hayakawa M. (2008). Studies on the isolation and distribution of rare actinomycetes in soil. Actinomycetol, 22, 12-19.
46. Hayakawa M, Nonomura H. (1987a). Efficacy of artificial humic acid as a selective nutrient in HV agar used for the isolation of soil actinomycetes. J Ferment Technol, 65, 609-616.
47. Hayakawa M, Nonomura H. (1987b). Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol, 65, 501-509.
48. Hayakawa M, Nonomura H. (1993). Selective Isolation Methods for Soil Actinomycetes (in Japanese) In: Beppu T, Seino A, Hotta K, eds. Tokyo: Japan Scientific Societies Press.
49. Hayakawa M, Ishizawa K, Nonomura H. (1988). Distribution of rare actinomycetes in Japanese soils. J Ferment Technol, 66, 367-373.
50. Hayakawa M, Kajiura T, Nonomura H. (1991a). New methods for the highly selective isolation of Streptosporangium and Dactylosporangium from soil. J Ferment Bioeng, 72, 327-333.
51. Hayakawa M, Tamura T, Nonomura H. (1991c). Selective isolation of Actinoplanes and Dactylosporangium from soil by using y-collidine as the chemoattractant. J Ferment Bioeng, 72, 426-432.
52. Hayakawa M, Takeuchi T, Yamazaki T. (1996a). Combined use of trimethoprim with nalidixic acid for the selective isolation of actinomycetes from soil. Actinomycetol, 10, 80-90.
53. Hayakawa M, Sadakata T, Kajiura T, Nonomura H. (1991b). New methods for the highly selective isolation of Micromonospora and Microbispora from soil. J Ferment Bioeng, 72, 320-326.
54. Hayakawa M, Tamura T, Iino H, Nonomura H. (1991d). Pollen-baiting and drying method for highly selective isolation of Actinoplanes spp. from soil. J Ferment Bioeng, 72, 433-438.
55. Hayakawa M, Ariizumi M, Yamazaki T, Nonomura H. (1995a). Chemotaxis in the zoosporic actinomycete Catenuloplanes japonicus. Actinomycetol, 9, 152-163.
56. Hayakawa M, Ishizawa T, Yamazaki T, Nonomura, H. (1995b). Distribution of antibiotic-producing Microbispora strains in soils with different pHs. Actinomycetes, 6, 75-79.
57. Hayakawa M, Momose Y, Yamazaki T, Nonomura H. (1996b). A method for the selective isolation of Microtetraspora glauca and related four-spored actinomycetes from soil. J Appl Bacteriol, 80, 375-386.
58. Hayakawa M, Iino H, Takeuchi S, Yamazaki T. (1997). Application of a method incorporating treatment with Chloramine-T for the selective isolation of Streptosporangiaceae from soil. J Ferment Bioeng, 84, 599-602.
59. Hayakawa M, Otoguro M, Takeuchi T, Yamazaki T, Iimura Y. (2000). Application of a method incorporating differential centrifugation for selective isolation of motile actinomycetes in soil and plant litter. Antonie Van Leeuwenhoek, 78, 171-185.
60. Hirsch CF, Christensen DL. (1983). Novel method for selective isolation of actinomycetes. Appl Environ Microbiol, 46, 925-929.
61. Hozzein WN, Ibrahim MA, Rabie AW. (2008). A new preferential medium for enumeration and isolation of desert actinomycetes. World J Microbiol Biotechnol, 24, 1547-1552.
62. Hsu SC, Lockwood JL. (1975). Powdered chitin agar as a selective medium for enumeration of actinomycetes in water and soil. Appl Microbiol, 29, 422-426.
63. Huck TA, Porter N, Bushell ME. (1991). Positive selection of antibioticproducing soil isolates. J Gen Microbiol, 137, 2321-2329
64. Hugenholtz P, Goebel BM, Pace NR. (1998). Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol, 180, 4765-4774
65. Ikeda S, Kaneko T, Okubo T, Rallos LE, Eda S, Mitsui H, Sato S, Nakamura Y, Tabata S, Minamisawa K. (2009). Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems. Microb Ecol, 58, 703-714.
66. Inahashi Y, Matsumoto A, Omura S, Takahashi Y. (2011). Streptosporangium oxazolinicum sp. nov., a novel endophytic actinomycete producing new antitrypanosomal antibiotics, spoxazomicins. J Antibiot, 64, 297-302.
67. Inahashi Y, Matsumoto A, Danbara H, Omura S, Takahashi Y. (2010). Phytohabitans suffuscus gen. nov., sp. nov., an actinomycete of the family Micromonosporaceae isolated from plant roots. Int J Syst Evol Microbiol, 60, 2652-2658
68. Indananda C, Matsumoto A, Inahashi Y, Takahashi Y, Duangmal K, Thamchaipenet A. (2010). Actinophytocola oryzae gen. nov., sp. nov., isolated from the roots of Thai glutinous rice plants, a new member of the family Pseudonocardiaceae. Int J Syst Evol Microbiol, 60, 1141-1146
69. Janso JE, Carter GT. (2010). Biosynthetic potential of phylogenetically unique endophytic actinomycetes from tropical plants. Appl Environ Microbiol, 76, 4377-4386
70. Jensen PR, Williams PG, Oh DC, Zeigler L, Fenical W. (2007). Speciesspecific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol, 73, 1146-1152
71. Jiang Y, Li WJ, Xu P, Tang SK, Xu LH. (2006). Study on diversity of actinomycetes under salt and alkaline environments. Wei Sheng Wu Xue Bao, 46, 191-195.
72. Jiang Y, Cao Y, Cai X, Xu L, Jiang C. (2009). Diversity and bioactivities of cultured actinomycete isolated from animal feces and Xylocopa dissimilis. Wei Sheng Wu Xue Bao, 49, 1152-1157
73. Jiang Y, Wiese J, Tang SK, Xu LH, Imhoff JF, Jiang CL. (2008a). Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae. Int J Syst Evol Microbiol, 58, 408-413.
74. Jiang Y, Cao Y, Zhao L, Wang Q, Jin R, He W, Xue Q. (2010). Ultrasonic treatment of soil samples for actinomycete isolation. Wei Sheng Wu Xue Bao, 50, 1094-1097
75. Jiang S, Sun W, Chen M, Dai S, Zhang L, Liu Y, Lee KJ, Li X. (2007). Diversity of culturable actinobacteria isolated from marine sponge Haliclona sp. Antonie Van Leeuwenhoek, 92, 405-416.
76. Jiang S, Li X, Zhang L, Sun W, Dai S, Xie L, Liu Y, Lee KJ. (2008b). Culturable actinobacteria isolated from marine sponge Iotrochota sp. Mar Biol, 153, 945-952.
77. Jiao JY, Wang HX, Zeng Y, Shen YM. (2006). Enrichment for microbes living in association with plant tissues. J Appl Microbiol, 100, 830-837.
78. Joseph SJ, Hugenholtz P, Sangwan P, Osborne CA, Janssen PH. (2003). Laboratory cultivation of widespread and previously uncultured soil bacteria. Appl Environ Microbiol, 69, 7210-7215
79. Jurado V, Groth I, Gonzalez JM, Laiz L, Saiz-Jimenez C. (2005a). Agromyces salentinus sp. nov. and Agromyces neolithicus sp. nov. Int J Syst Evol Microbiol, 55, 153-157.
80. Jurado V, Groth I, Gonzalez JM, Laiz L, Saiz-Jimenez C. (2005b). Agromyces subbeticus sp. nov., isolated from a cave in southern Spain. Int J Syst Evol Microbiol, 55, 1897-1901
81. Kennedy J, Marchesi JR, Dobson AD. (2007). Metagenomic approaches to exploit the biotechnological potential of the microbial consortia of marine sponges. Appl Microbiol Biotechnol, 75, 11-20.
82. Kim BY, Kshetrimayum JD, Goodfellow M. (2011). Detection, selective isolation and characterisation of Dactylosporangium strains from diverse environmental samples. Syst Appl Microbiol, 34, 606-616.
83. Kim CJ, Lee KH, Shimazu A, Kwon OS, Park DJ. (1995). Isolation of rare actinomycetes in various types of soil. K J Appl Microbiol Biotechnol, 23, 36-42.
84. Kizuka M, Enokita R, Takahashi K, Okazaki T. (1997). Distribution of the actinomycetes in the Republic of South Africa investigated using a newly developed isolation method. Actinomycetologia, 11, 54-58.
85. Kurtböke DI. (1996). Exploitation of host-phage interactions for the selective isolation of the industrially important bacteria. Med Chem Res, 6, 248-255.
86. Kurtböke DI. (2003). Selective Isolation of Rare Actinomycetes. Nambour, Australia: Queensland Complete Printing Services.
87. Kurtböke DI. (2010). Biodiscovery from microbial resources: Actinomycetes leading the way. Microbiol Aust, 31, 53-57.
88. Kurtböke DI. (2011). Exploitation of phage battery in the search for bioactive actinomycetes. Appl Microbiol Biotechnol, 89, 931-937.
89. Kurtböke DI. (2012). Biodiscovery from rare actinomycetes: an eco-taxonomical perspective. Appl Microbiol Biotechnol, 93, 1843-1852
90. Kurtböke DI, French JR. (2007). Use of phage battery to investigate the actinofloral layers of termite gut microflora. J Appl Microbiol, 103, 722-734.
91. Kuester E, Williams ST. (1964). Selection of media for isolation of streptomycetes. Nature, 202, 928-929.
92. Lamari L, Zitouni A, Boudjella H, Badji B, Sabaou N, Lebrihi A, Lefebvre G, Seguin E, Tillequin F. (2002). New dithiolopyrrolone antibiotics from Saccharothrix sp. SA 233. I. Taxonomy, fermentation, isolation and biological activities. J Antibiot, 55, 696-701.
93. Lanoot B, Vancanneyt M, Hoste B, Vandemeulebroecke K, Cnockaert MC, Dawyndt P, Liu Z, Huang Y, Swings J. (2005). Grouping of streptomycetes using 16S-ITS RFLP fingerprinting. Res Microbiol, 156, 755-762.
94. Larsen TO, Smedsgaard J, Nielsen KF, Hansen ME, Frisvad JC. (2005). Phenotypic taxonomy and metabolite profiling in microbial drug discovery. Nat Prod Rep, 22, 672-695.
95. Laurent FJ, Provost F, Boiron P. (1999). Rapid identification of clinically relevant Nocardia species to genus level by 16S rRNA gene PCR. J Clin Microbiol, 37, 99-102.
96. Lazzarini A, Cavaletti L, Toppo G, Marinelli F. (2001). Rare genera of actinomycetes as potential producers of new antibiotics. Antonie Van Leeuwenhoek, 79, 399-405.
97. Lee SD. (2006a). Amycolatopsis jejuensis sp. nov. and Amycolatopsis halotolerans sp. nov., novel actinomycetes isolated from a natural cave. Int J Syst Evol Microbiol, 56, 549-553.
98. Lee SD. (2006b). Nocardia jejuensis sp. nov., a novel actinomycete isolated from a natural cave on Jeju Island, Republic of Korea. Int J Syst Evol Microbiol, 56, 559-562.
99. Lee SD. (2006c). Actinocorallia cavernae sp. nov., isolated from a natural cave in Jeju, Korea. Int J Syst Evol Microbiol, 56, 1085-1088
100. Lee SD, Kang SO, Hah YC. (2000a). Hongia gen. nov., a new genus of the order Actinomycetales. Int J Syst Evol Microbiol, 50 Pt 1, 191-199.
101. Lee SD, Kang SO, Hah YC. (2000b). Catellatospora koreensis sp. nov., a novel actinomycete isolated from a gold-mine cave. Int J Syst Evol Microbiol, 50 Pt 3, 1103-1111
102. Lee SD, Kim ES, Roe JH, Kim J, Kang SO, Hah YC. (2000c). Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov. Int J Syst Evol Microbiol, 50 Pt 3, 1315-1323
103. Li B, Xie C-H, Yokota A. (2007). Nocardioides exalbidus sp. nov., a novel actinomycete isolated from lichen in Izu-Oshima Island, Japan. Actinomycetologica, 21, 22-26.
104. Li-Hua H, Qi-Ren L, Cheng-Lin J. (1996). Diversity of soil actinomycetes in Japan and China. Appl Environ Microbiol, 62, 244-248.
105. Li IuV, Terekhova LP, Gapochka MG. (2002a). Isolation of actinomycetes from soil using extremely high frequency radiation. Mikrobiologiia, 71, 119-122.
106. Li Yu V, Terekhova LP, Alferova IV, Gapochka MG. (2002b). The use of EHF radiation in different wavelength bands for the selective isolation of actinomycetes from soil. Biomed Radioelektron, 5, 20-24.
107. Li Iu V, Terekhova LP, Alferova IV, Galatenko OA, Gapochka MG. (2003). The application of succession analysis in combination with extremely high-frequency irradiation to the selective isolation of actinomycetes from soil. Mikrobiologiia, 72, 131-135.
108. Lozupone CA, Knight R. (2007). Global patterns in bacterial diversity. Proc Natl Acad Sci USA, 104, 11436-1144
109. MacNeil IA, Tiong CL, Minor C, August PR, Grossman TH, Loiacono KA, Lynch BA, Phillips T, Narula S, Sundaramoorthi R, Tyler A, Aldredge T, Long H, Gilman M, Holt D, Osburne MS. (2001). Expression and isolation of antimicrobial small molecules from soil DNA libraries. J Mol Microbiol Biotechnol, 3, 301-308.
110. Maldonado LA, Stach JE, Pathom-aree W, Ward AC, Bull AT, Goodfellow M. (2005). Diversity of cultivable actinobacteria in geographically widespread marine sediments. Antonie Van Leeuwenhoek, 87, 11-18.
111. Matsumoto A, Takahashi Y, Mochizuki M, Seino A, Iwai Y, Omura S. (1998). Characterization of actinomycetes isolated from fallen leaves. Actinomycetologica, 12, 46-48.
112. Matsumoto A, Takahashi Y, Shinose M, Seino A, Iwai Y, Omura S. (2003). Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae. Int J Syst Evol Microbiol, 53, 1553-1559
113. MiguÉlez EM, Martín C, Hardisson C, Manzanal MB. (1993). Synchronous germination of Streptomyces antibioticus spores: tool for the analysis of hyphal growth in liquid cultures. FEMS Microbiol Lett, 109, 123-129.
114. Molinski TF, Dalisay DS, Lievens SL, Saludes JP. (2009). Drug development from marine natural products. Nat Rev Drug Discov, 8, 69-85.
115. Moran NA. (2006). Symbiosis. Curr Biol, 16, R866-R871.
116. Nakaew N, Pathom-aree W, Lumyong S. (2009). Generic diversity of rare actinomycetes from Thai cave soils and their possible use as new bioactive compounds. Actinomycetologica, 23, 21-26.
117. Nam SW, Kim W, Chun J, Goodfellow M. (2004). Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol, 54, 1209-1212
118. Nejad P, Johnson PA. (2000). Endophytic bacteria induce growth promotion and wilt disease suppression in oilseed rape and tomato. Biol Control, 18, 208-215.
119. Nolan RD, Cross T. (1988). Isolation and screening of actinomycetes. In: Goodfellow M, Williams ST, Mordarski M, ed. Actinomycetes in biotechnology. London: Academic Press, pp 2-8.
120. Nonomura H. (1988). Isolation, taxonomy and ecology of soil actinomycetes. Actinomycetologia, 3, 45-54.
121. Nonomura H, Ohara Y. (1969). Distribution of actinomycetes in soil. VI. A culture method effective for both preferential isolation and enumeration of Microbispora and Streptosporangium strains in soil (Part 1). J Ferment Technol, 47, 463-469.
122. Nonomura H, Hayakawa M. (1988). New methods for the selective isolation of soil actinomycetes. In: Okami Y, Beppu T, Ogawara H, ed. Biology of Actinomycetes. Tokyo: Japan Scientific Societies Press, pp 288-293.
123. Oh DC, Poulsen M, Currie CR, Clardy J. (2009a). Dentigerumycin: a bacterial mediator of an ant-fungus symbiosis. Nat Chem Biol, 5, 391-393.
124. Oh DC, Scott JJ, Currie CR, Clardy J. (2009b). Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp. Org Lett, 11, 633-636.
125. Okami B, Hotta AK. (1988). Search and discovery of new antibiotics. In: Goodfellow M, Williams ST, Mordarski M, ed. Actinomycetes in biotechnology. Oxford: Pergamon Press, pp 33-67.
126. Okazaki T. (2006). Intrigued by actinomycete diversity. Actinomycetologica, 20, 15-22.
127. Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodfellow M, Bull AT. (2009). Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile. Antonie Van Leeuwenhoek, 95, 121-133.
128. Olson JB, Harmody DK, Bej AK, McCarthy PJ. (2007). Tsukamurella spongiae sp. nov., a novel actinomycete isolated from a deep-water marine sponge. Int J Syst Evol Microbiol, 57, 1478-1481
129. Otoguro M, Hayakawa M, Yamazaki T, Iimura Y. (2001a). An integrated method for the enrichment and selective isolation of Actinokineospora spp. in soil and plant litter. J Appl Microbiol, 91, 118-130.
130. Otoguro M, Hayakawa M, Yamazaki T, Tamura T, Hatano K, Iimura Y. (2001b). Numerical phenetic and phylogenetic analyses of Actinokineospora isolates, with a description of Actinokineospora auranticolor sp. nov. and Actinokineospora enzanensis sp. nov. Actinomycetol, 15, 30-39.
131. Palleroni NJ. (1980). A chemotactic method for the isolation of Actinoplanaceae. Arch Microbiol, 128, 53-55.
132. Peraud O, Biggs JS, Hughen RW, Light AR, Concepcion GP, Olivera BM, Schmidt EW. (2009). Microhabitats within venomous cone snails contain diverse actinobacteria. Appl Environ Microbiol, 75, 6820-6826
133. Poulsen M, Oh DC, Clardy J, Currie CR. (2011). Chemical analyses of wasp-associated streptomyces bacteria reveal a prolific potential for natural products discovery. PLoS ONE, 6, e16763.
134. Poulsen M, Cafaro MJ, Erhardt DP, Little AEF, Gerardo NM, Tebbets B, Klein BS, Currie CR. (2010). Variation in Pseudonocardia antibiotic defense helps govern parasite-induced morbidity in the fungusgrowing ant-microbe symbiosis. Env Microbiol Rep, 2, 534-540.
135. Pozzi R, Simone M, Mazzetti C, Maffioli S, Monciardini P, Cavaletti L, Bamonte R, Sosio M, Donadio S. (2011). The genus Actinoallomurus and some of its metabolites. J Antibiot, 64, 133-139.
136. Qin S, Xing K, Jiang JH, Xu LH, Li WJ. (2011). Biodiversity, bioactive natural products and biotechnological potential of plantassociated endophytic actinobacteria. Appl Microbiol Biotechnol, 89, 457-473.
137. Qin S, Li J, Chen HH, Zhao GZ, Zhu WY, Jiang CL, Xu LH, Li WJ. (2009). Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China. Appl Environ Microbiol, 75, 6176-6186
138. Qiu D, Ruan J, Huang Y. (2008). Selective isolation and rapid identification of members of the genus Micromonospora. Appl Environ Microbiol, 74, 5593-5597
139. Sabaou N, Boudjella H, Bennadji A, Mostefaoui A, Zitouni A, Lamari L, Bennadji H. (1998). Les sols des oasis du Sahara algÉrien, source d'actinomycètes rares producteurs d'antibiotiques. SÉcheresse, 9, 147-153.
140. Schäfer J, Jäckel U, Kämpfer P. (2010). Development of a new PCR primer system for selective amplification of Actinobacteria. FEMS Microbiol Lett, 311, 103-112.
141. Schloss PD, Handelsman J. (2003). Biotechnological prospects from metagenomics. Curr Opin Biotechnol, 14, 303-310.
142. Schloss PD, Handelsman J. (2005). Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biol, 6, 229.
143. Schmidt EW. (2008). Trading molecules and tracking targets in symbiotic interactions. Nat Chem Biol, 4, 466-473.
144. Schneider K, Nachtigall J, Hänchen A, Nicholson G, Goodfellow M, Süssmuth RD, Fiedler HP. (2009). Lipocarbazoles, secondary metabolites from Tsukamurella pseudospumae Acta 1857 with antioxidative activity. J Nat Prod, 72, 1768-1772
145. Scott JJ, Oh DC, Yuceer MC, Klepzig KD, Clardy J, Currie CR. (2008). Bacterial protection of beetle-fungus mutualism. Science, 322, 63.
146. Seo JP, Yun YW, Lee SD. (2007). Nocardia speluncae sp. nov., isolated from a cave. Int J Syst Evol Microbiol, 57, 2932-2935
147. Seong CN, Choi JH, Baik KS. (2001). An improved selective isolation of rare actinomycetes from forest soil. J Microbiol, 39, 17-23.
148. Sessitsch A, Reiter B, Berg G. (2004). Endophytic bacterial communities of field-grown potato plants and their plant-growth-promoting and antagonistic abilities. Can J Microbiol, 50, 239-249.
149. Shearer MC. (1987). Methods for the isolation of non-streptomycete actinomycetes. Dev Ind Microbiol, 28, 91-97.
150. Shirling EB, Gottlieb D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol,16, 313-340.
151. Steingrube VA, Wilson RW, Brown BA, Jost KC Jr, Blacklock Z, Gibson JL, Wallace RJ Jr. (1997). Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura, Gordona, Nocardia, Rhodococcus, Streptomyces, and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysis. J Clin Microbiol, 35, 817-822.
152. Sun W, Dai S, Jiang S, Wang G, Liu G, Wu H, Li X. (2010). Culturedependent and culture-independent diversity of Actinobacteria associated with the marine sponge Hymeniacidon perleve from the South China Sea. Antonie Van Leeuwenhoek, 98, 65-75.
153. Surette MA, Sturz AV, Lada RR, Nowak J. (2003). Bacterial endophytes in processing carrots (Daucus carota L. var. sativus): their localization, population density, biodiversity and their effects on plant growth. Plant Soil, 253, 381-390.
154. Suzuki Si, Okuda T, Komatsubara S. (1999). Selective isolation and distribution of Sporichthya strains in soil. Appl Environ Microbiol, 65, 1930-1935
155. Suzuki Si. (2001). Establishment and use of gellan gum media for selective isolation and distribution survey of specific rare Actinomycetes. Actinomycetologica, 15, 55-60.
156. Taechowisan T, Peberdy JF, Lumyong S. (2003). Isolation of endophytic actinomycetes from selected plants and their antifungal activity. World J Microbiol Biotechnol, 19, 381-385.
157. Takahashi Y, Omura S. (2003). Isolation of new actinomycete strains for the screening of new bioactive compounds. J Gen Appl Microbiol, 49, 141-154.
158. Tamura T, Hayakawa M, Hatano K. (2001). A new genus of the order Actinomycetales, Virgosporangium gen. nov., with descriptions of Virgosporangium ochraceum sp. nov. and Virgosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol, 51, 1809-1816
159. Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki K. (2011). Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora. Int J Syst Evol Microbiol, 61, 1275-1280
160. Tan GY, Ward AC, Goodfellow M. (2006). Exploration of Amycolatopsis diversity in soil using genus-specific primers and novel selective media. Syst Appl Microbiol, 29, 557-569.
161. Taubes G. (2008). The bacteria fight back. Science, 321, 356-361.
162. Terekhova L. (2003). Isolation of actinomycetes with the use of microwaves and electric pulses. In: Kurtböke I, ed. Selective isolation of rare actinomycetes. Nambour, Queensland, Australia: University of the Sunshine Coast, pp 82-101.
163. Tian X, Cao L, Tan H, Han W, Chen M, Liu Y, Zhou S. (2007). Diversity of cultivated and uncultivated actinobacterial endophytes in the stems and roots of rice. Microb Ecol, 53, 700-707.
164. Tiwari K, Gupta RK. (2012). Rare actinomycetes: a potential storehouse for novel antibiotics. Crit Rev Biotechnol, 32, 108-132.
165. Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. (2005). Comparative metagenomics of microbial communities. Science, 308, 554-557.
166. Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature, 428, 37-43.
167. Hop DV, Sakiyama Y, Binh CT, Otoguro M, Hang DT, Miyadoh S, Luong DT, Ando K. (2011). Taxonomic and ecological studies of actinomycetes from Vietnam: isolation and genus-level diversity. J Antibiot, 64, 599-606.
168. Van Lanen SG, Shen B. (2006). Microbial genomics for the improvement of natural product discovery. Curr Opin Microbiol, 9, 252-260.
169. Vandamme P, Pot B, Gillis M, de Vos P, Kersters K, Swings J. (1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev, 60, 407-438.
170. Velázquez E, Rojas M, Lorite MJ, Rivas R, Zurdo-Piñeiro JL, Heydrich M, Bedmar EJ. (2008). Genetic diversity of endophytic bacteria which could be find in the apoplastic sap of the medullary parenchym of the stem of healthy sugarcane plants. J Basic Microbiol, 48, 118-124.
171. Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. Science, 304, 66-74.
172. Vickers JC, Williams ST, Ross GW. (1984). A taxonomic approach to selective isolation of streptomycetes from soil. In: Ortiz-Ortiz L, Bojalil LF, Yakoleff V, ed. Biological, Biochemical and Biomedical Aspects of Actinomycetes. London: Academic Press, pp 553-561.
173. Waksman SA, Schatz A. (1943). Strain specificity and production of antibiotic substances. Proc Natl Acad Sci USA, 29, 74-79.
174. Walsh C. (2003). Where will new antibiotics come from? Nat Rev Microbiol, 1, 65-70.
175. Wang GY, Graziani E, Waters B, Pan W, Li X, McDermott J, Meurer G, Saxena G, Andersen RJ, Davies J. (2000). Novel natural products from soil DNA libraries in a streptomycete host. Org Lett, 2, 2401-2404
176. Webster NS, Negri AP, Munro MM, Battershill CN. (2004). Diverse microbial communities inhabit Antarctic sponges. Environ Microbiol, 6, 288-300.
177. Webster NS, Taylor MW, Behnam F, Lücker S, Rattei T, Whalan S, Horn M, Wagner M. (2010). Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environ Microbiol, 12, 2070-2082
178. Williams ST, Wellington EMH. (1982). Principles and problems of selective isolation of microbes. In: Bullock JD, Nisbet LJ, Winstanley DJ, ed. Bioactive Microbial Products I: Search and Discovery. London: Academic Press, pp 9-26.
179. Williams ST, Goodfellow M, Vickers JC. (1984). New microbes from old habitats? In: Kelly DP, Carr NG, ed. The Microbe II: Prokaryotes and Eukaryotes. Cambridge: University Press, pp 219-256.
180. Wilson RW, Steingrube VA, Brown BA, Wallace RJ Jr. (1998). Clinical application of PCR-restriction enzyme pattern analysis for rapid identification of aerobic actinomycete isolates. J Clin Microbiol, 36, 148-152.
181. Williams ST, Locci R, Beswick A, Kurtböke DI, Kuznetsov VD, Le Monnier FJ, Long PF, Maycroft KA, Palma RA, Petrolini B. (1993). Detection and identification of novel actinomycetes. Res Microbiol, 144, 653-656.
182. Xin Y, Huang J, Deng M, Zhang W. (2008). Culture-independent nested PCR method reveals high diversity of actinobacteria associated with the marine sponges Hymeniacidon perleve and Sponge sp. Antonie Van Leeuwenhoek, 94, 533-542.
183. Xin Y, Wu P, Deng M, Zhang W. (2009). Phylogenetic diversity of the culturable rare actinomycetes in marine sponge Hymeniacidon perlevis by improved isolation media. Wei Sheng Wu Xue Bao, 49, 859-866.
184. Yamamura H, Hayakawa M, Iimura Y. (2003a). Application of sucrosegradient centrifugation for selective isolation of Nocardia spp. from soil. J Appl Microbiol, 95, 677-685.
185. Yamamura H, Hayakawa M, Nakagawa Y, Iimura Y. (2003b). Species diversity of Nocardiae isolated from Lake and Moat sediment samples. Actinomycetol, 17, 44-46.
186. Yamamura H, Hayakawa M, Nakagawa Y, Iimura Y. (2004). Characterization of Nocardia asteroides isolates from different ecological habitats on the basis of repetitive extragenic palindromic-PCR fingerprinting. Appl Environ Microbiol, 70, 3149-3151
187. Yamamura H, Hayakawa M, Nakagawa Y, Tamura T, Kohno T, Komatsu F, Iimura Y. (2005). Nocardia takedensis sp. nov., isolated from moat sediment and scumming activated sludge. Int J Syst Evol Microbiol, 55, 433-436.
188. Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M. (2011a). Actinomycetospora rishiriensis sp. nov., isolated from a lichen. Int J Syst Evol Microbiol, 61, 2621-2625
189. Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M. (2011b). Actinomycetospora iriomotensis sp. nov., a novel actinomycete isolated from a lichen sample. J Antibiot, 64, 289-292.
190. Yang B, Xue QH, Chen ZQ, Zhou YQ, Zhang XL, Xu YJ, Guo ZY. (2008). Effects of microwave irradiation on isolation of soil actinomycetes. Ying Yong Sheng Tai Xue Bao, 19, 1091-1098
191. You KM, Park YK. (1996). A new method for the selective isolation of actinomycetes from soil. Biotechnol Tech, 10, 541-546.
192. Yu K, Zhang T. (2012). Metagenomic and metatranscriptomic analysis of microbial community structure and gene expression of activated sludge. PLoS ONE, 7, e38183.
193. Yuan HM, Zhang XP, Zhao K, Zhong K, Gu YF, Lindstrom K. (2008). Genetic characterisation of endophytic actinobacteria isolated from the medicinal plants in Sichuan. Ann Microbiol 58, 597-604.
194. Zhang H, Lee YK, Zhang W, Lee HK. (2006). Culturable actinobacteria from the marine sponge Hymeniacidon perleve: isolation and phylogenetic diversity by 16S rRNA gene-RFLP analysis. Antonie Van Leeuwenhoek, 90, 159-169.
195. Zhao GZ, Li J, Huang HY, Zhu WY, Zhao LX, Tang SK, Xu LH, Li WJ. (2010a). Pseudonocardia artemisiae sp. nov., a novel actinobacterium isolated from surface-sterilized Artemisia annua L. Int J Syst Evol Microbiol, 61, 1061-1065
196. Zhao GZ, Li J, Qin S, Huang HY, Zhu WY, Xu LH, Li WJ. (2010b). Streptomyces artemisiae sp. nov., isolated from surface-sterilized tissue of Artemisia annua L. Int J Syst Evol Microbiol, 60, 27-32.
197. Zhao K, Penttinen P, Guan T, Xiao J, Chen Q, Xu J, Lindström K, Zhang L, Zhang X, Strobel GA. (2011). The diversity and anti-microbial activity of endophytic actinomycetes isolated from medicinal plants in Panxi plateau, China. Curr Microbiol, 62, 182-190.
198. Zin NM, Sarmin NI, Ghadin N, Basri DF, Sidik NM, Hess WM, Strobel GA. (2007). Bioactive endophytic streptomycetes from the Malay Peninsula. FEMS Microbiol Lett, 274, 83-88.
199. Zitouni A, Boudjella H, Mathieu F, Sabaou N, Lebrihi A. (2004a). Mutactimycin PR, a new anthracycline antibiotic from Saccharothrix sp. SA 103. I. Taxonomy, fermentation, isolation and biological activities. J Antibiot, 57, 367-372.
200. Zitouni A, Lamari L, Boudjella H, Badji B, Sabaou N, Gaouar A, Mathieu F, Lebrihi A, Labeda DP. (2004b). Saccharothrix algeriensis sp. nov., isolated from Saharan soil. Int J Syst Evol Microbiol, 54, 1377-1381
201. Zviagintsev DG, Zenova GM, Doroshenko EA, Griadunova AA, Gracheva TA, Sudnitsyn II. (2007). Actinomycete growth in conditions of low moisture. Izv Akad Nauk Ser Biol, 296-302.