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Volumn 70, Issue 2, 2009, Pages 70-93

Structure and modeling in the design of β- And γ-secretase inhibitors

Author keywords

secretase; ; secretase; Alzheimer's disease; BACE 1; Structure based design

Indexed keywords

ASPARTIC PROTEINASE; BEGACESTAT; BETA SECRETASE INHIBITOR; BMS 299897; CATHEPSIN D; GAMMA SECRETASE; GAMMA SECRETASE INHIBITOR; GSI 953; MEMBRANE PROTEIN; MK 560; N2 [2 (3,5 DIFLUOROPHENYL) 2 HYDROXYACETYL] N1 (6,7 DIHYDRO 5 METHYL 6 OXO 5H DIBENZ[B,D]AZEPIN 7 YL)ALANINAMIDE; OM99 2; RENIN; TARENFLURBIL; UNCLASSIFIED DRUG; WO 04100958; WO 05023772; WO 06045554; WO 06061136; WO 2006008558; WO 2006043064; WO 2007054739;

EID: 64349124929     PISSN: 02724391     EISSN: 10982299     Source Type: Journal    
DOI: 10.1002/ddr.20291     Document Type: Article
Times cited : (26)

References (186)
  • 2
    • 9644302954 scopus 로고    scopus 로고
    • A general technique to rank protein-ligand binding affinities and determine allosteric versus direct binding site competition in compound mixtures
    • Annis DA, Nazef N, Chuang CC, Scott MP, Nash HM. 2004. A general technique to rank protein-ligand binding affinities and determine allosteric versus direct binding site competition in compound mixtures. J Am Chem Soc 126:15495-15503.
    • (2004) J Am Chem Soc , vol.126 , pp. 15495-15503
    • Annis, D.A.1    Nazef, N.2    Chuang, C.C.3    Scott, M.P.4    Nash, H.M.5
  • 3
    • 0035665229 scopus 로고    scopus 로고
    • The linear interaction energy method for predicting ligand binding free energies
    • Åqvist J, Marelius J. 2001. The linear interaction energy method for predicting ligand binding free energies. Comb Chem High Throughput Screen 4:613-626.
    • (2001) Comb Chem High Throughput Screen , vol.4 , pp. 613-626
    • Åqvist, J.1    Marelius, J.2
  • 6
    • 33750696316 scopus 로고    scopus 로고
    • Computer-aided drug design applied to beta and gamma secretase inhibitors: Perspectives for new Alzheimer disease therapy
    • Avram S, Milac AL, Mihailescu DF, Dabu A, Flonta ML. 2006. Computer-aided drug design applied to beta and gamma secretase inhibitors: perspectives for new Alzheimer disease therapy. Curr Enzyme Inhib 2:311-328.
    • (2006) Curr Enzyme Inhib , vol.2 , pp. 311-328
    • Avram, S.1    Milac, A.L.2    Mihailescu, D.F.3    Dabu, A.4    Flonta, M.L.5
  • 11
    • 34548510854 scopus 로고    scopus 로고
    • 2-Amino-3,4- dihydroquinazolines as inhibitors of BACE-1 (beta-site APP cleaving enzyme): Use of structure based design to convert a micromolar hit into a nanomolar lead
    • Baxter EW, Conway KA, Kennis L, Bischoff F, Mercken MH, Winter HL, Reynolds CH, Tounge BA, Luo C, Scott MK, et al. 2007. 2-Amino-3,4- dihydroquinazolines as inhibitors of BACE-1 (beta-site APP cleaving enzyme): Use of structure based design to convert a micromolar hit into a nanomolar lead. J Med Chem 50:4261-4264.
    • (2007) J Med Chem , vol.50 , pp. 4261-4264
    • Baxter, E.W.1    Conway, K.A.2    Kennis, L.3    Bischoff, F.4    Mercken, M.H.5    Winter, H.L.6    Reynolds, C.H.7    Tounge, B.A.8    Luo, C.9    Scott, M.K.10
  • 14
    • 64349085229 scopus 로고    scopus 로고
    • Bhisetti GR, Saunders JO, Murcko MA, Lepre CA, Britt SD, Come JH, Deninger DD, Wang T Vertex Pharmaceuticals Incorporated, USA, Assignee. 2002. Preparation of b-carbolines and other inhibitors of BACE-1 aspartic proteinase useful against Alzheimer's and other BACE-mediated diseases. WO patent 2002088101
    • Bhisetti GR, Saunders JO, Murcko MA, Lepre CA, Britt SD, Come JH, Deninger DD, Wang T (Vertex Pharmaceuticals Incorporated, USA). Assignee. 2002. Preparation of b-carbolines and other inhibitors of BACE-1 aspartic proteinase useful against Alzheimer's and other BACE-mediated diseases. WO patent 2002088101.
  • 17
    • 64349109015 scopus 로고    scopus 로고
    • Broutin P-EFX, Laporte V, Lincoln CM, Carr JA, Mullan M, Bakshi P. 2006. Novel g-secretase transition state analogs as Ab inhibitors. Abstracts of Papers, 231st ACS National Meeting, Atlanta, GA, March 26-30, 2006:MEDI-158.
    • Broutin P-EFX, Laporte V, Lincoln CM, Carr JA, Mullan M, Bakshi P. 2006. Novel g-secretase transition state analogs as Ab inhibitors. Abstracts of Papers, 231st ACS National Meeting, Atlanta, GA, March 26-30, 2006:MEDI-158.
  • 21
    • 7044241339 scopus 로고    scopus 로고
    • Insights from modeling the tertiary structure of human BACE2
    • Chou K-C. 2004. Insights from modeling the tertiary structure of human BACE2. J Proteome Res 3:1069-1072.
    • (2004) J Proteome Res , vol.3 , pp. 1069-1072
    • Chou, K.-C.1
  • 22
    • 0036079733 scopus 로고    scopus 로고
    • Prediction of the tertiary structure of the beta-secretase zymogen
    • Chou KC, Howe WJ. 2002. Prediction of the tertiary structure of the beta-secretase zymogen. Biochem Biophys Res Commun 292:702-708.
    • (2002) Biochem Biophys Res Commun , vol.292 , pp. 702-708
    • Chou, K.C.1    Howe, W.J.2
  • 23
    • 24944439990 scopus 로고    scopus 로고
    • Gamma-secretase as a therapeutic target for the treatment of Alzheimer's disease
    • Churcher I, Beher D. 2005. Gamma-secretase as a therapeutic target for the treatment of Alzheimer's disease. Curr Pharm Des 11:3363-3382.
    • (2005) Curr Pharm Des , vol.11 , pp. 3363-3382
    • Churcher, I.1    Beher, D.2
  • 25
    • 9744221865 scopus 로고    scopus 로고
    • Identification of a small molecule nonpeptide active site beta-secretase inhibitor that displays a nontraditional binding mode for aspartyl proteases
    • Coburn CA, Stachel SJ, Li YM, Rush DM, Steele TG, Chen-Dodson E, Holloway MK, Xu M, Huang Q, Lai MT, et al. 2004. Identification of a small molecule nonpeptide active site beta-secretase inhibitor that displays a nontraditional binding mode for aspartyl proteases. J Med Chem 47:6117-6119.
    • (2004) J Med Chem , vol.47 , pp. 6117-6119
    • Coburn, C.A.1    Stachel, S.J.2    Li, Y.M.3    Rush, D.M.4    Steele, T.G.5    Chen-Dodson, E.6    Holloway, M.K.7    Xu, M.8    Huang, Q.9    Lai, M.T.10
  • 31
    • 13444274739 scopus 로고    scopus 로고
    • γ-Secretase inhibitors: Still in the running as Alzheimer's therapeutics
    • de Strooper B, Marjaux E. 2004. γ-Secretase inhibitors: still in the running as Alzheimer's therapeutics. Drug Discovery Today: Therapeut Strat 1:1-6.
    • (2004) Drug Discovery Today: Therapeut Strat , vol.1 , pp. 1-6
    • de Strooper, B.1    Marjaux, E.2
  • 34
    • 33645578379 scopus 로고    scopus 로고
    • Deletion of presenilin 1 hydrophilic loop sequence leads to impaired gamma-secretase activity and exacerbated amyloid pathology
    • Deng Y, Tarassishin L, Kallhoff V, Peethumnongsin E, Wu L, Li YM, Zheng H. 2006. Deletion of presenilin 1 hydrophilic loop sequence leads to impaired gamma-secretase activity and exacerbated amyloid pathology. J Neurosci 26:3845-3854.
    • (2006) J Neurosci , vol.26 , pp. 3845-3854
    • Deng, Y.1    Tarassishin, L.2    Kallhoff, V.3    Peethumnongsin, E.4    Wu, L.5    Li, Y.M.6    Zheng, H.7
  • 35
    • 33751063056 scopus 로고    scopus 로고
    • Progress toward the discovery and development of efficacious BACE inhibitors
    • Durham TB, Shepherd TA. 2006. Progress toward the discovery and development of efficacious BACE inhibitors. Curr Opin Drug Discov Dev 9:776-791.
    • (2006) Curr Opin Drug Discov Dev , vol.9 , pp. 776-791
    • Durham, T.B.1    Shepherd, T.A.2
  • 36
    • 37849043411 scopus 로고    scopus 로고
    • Application of fragment-based lead generation to the discovery of novel, cyclic amidine beta-secretase inhibitors with nanomolar potency, cellular activity, and high ligand efficiency
    • Edwards PD, Albert JS, Sylvester M, Aharony D, Andisik D, Callaghan O, Campbell JB, Carr RA, Chessari G, Congreve M, et al. 2007. Application of fragment-based lead generation to the discovery of novel, cyclic amidine beta-secretase inhibitors with nanomolar potency, cellular activity, and high ligand efficiency. J Med Chem 50:5912-5925.
    • (2007) J Med Chem , vol.50 , pp. 5912-5925
    • Edwards, P.D.1    Albert, J.S.2    Sylvester, M.3    Aharony, D.4    Andisik, D.5    Callaghan, O.6    Campbell, J.B.7    Carr, R.A.8    Chessari, G.9    Congreve, M.10
  • 39
    • 64349092146 scopus 로고    scopus 로고
    • Felsenstein K, Smith DW, Poss MA, Chaturvedula P, Sloan CP Bristol-Myers Squibb Company, USA, Assignee. 1997. Preparation of 5-amino-6-cyclohexyl-4- hydroxyhexanamide derivatives as inhibitors of beta-amyloid protein production for the treatment of Alzheimer's disease. EP patent 778266
    • Felsenstein K, Smith DW, Poss MA, Chaturvedula P, Sloan CP (Bristol-Myers Squibb Company, USA). Assignee. 1997. Preparation of 5-amino-6-cyclohexyl-4- hydroxyhexanamide derivatives as inhibitors of beta-amyloid protein production for the treatment of Alzheimer's disease. EP patent 778266.
  • 44
    • 42949114969 scopus 로고    scopus 로고
    • In silico multi-filter screening approaches for developing novel beta-secretase inhibitors
    • Fujimoto T, Matsushita Y, Gouda H, Yamaotsu N, Hirono S. 2008. In silico multi-filter screening approaches for developing novel beta-secretase inhibitors. Bioorg Med Chem Lett 18:2771-2775.
    • (2008) Bioorg Med Chem Lett , vol.18 , pp. 2771-2775
    • Fujimoto, T.1    Matsushita, Y.2    Gouda, H.3    Yamaotsu, N.4    Hirono, S.5
  • 45
    • 1042268086 scopus 로고    scopus 로고
    • Splice variants: A homology modeling approach
    • Furnham N, Ruffle S, Southan C. 2004. Splice variants: a homology modeling approach. Proteins 54:596-608.
    • (2004) Proteins , vol.54 , pp. 596-608
    • Furnham, N.1    Ruffle, S.2    Southan, C.3
  • 46
    • 33745814403 scopus 로고    scopus 로고
    • Naphthyl and coumarinyl biarylpiperazine derivatives as highly potent human beta-secretase inhibitors. Design, synthesis, and enzymatic BACE-1 and cell assays
    • Garino C, Tomita T, Pietrancosta N, Laras Y, Rosas R, Herbette G, Maigret B, Quelever G, Iwatsubo T, Kraus JL. 2006. Naphthyl and coumarinyl biarylpiperazine derivatives as highly potent human beta-secretase inhibitors. Design, synthesis, and enzymatic BACE-1 and cell assays. J Med Chem 49:4275-4285.
    • (2006) J Med Chem , vol.49 , pp. 4275-4285
    • Garino, C.1    Tomita, T.2    Pietrancosta, N.3    Laras, Y.4    Rosas, R.5    Herbette, G.6    Maigret, B.7    Quelever, G.8    Iwatsubo, T.9    Kraus, J.L.10
  • 47
    • 33947315426 scopus 로고    scopus 로고
    • Drug evaluation: (R)-flurbiprofen: an enantiomer of flurbiprofen for the treatment of Alzheimer's disease
    • Geerts H. 2007. Drug evaluation: (R)-flurbiprofen: an enantiomer of flurbiprofen for the treatment of Alzheimer's disease. IDrugs 10:121-133.
    • (2007) IDrugs , vol.10 , pp. 121-133
    • Geerts, H.1
  • 51
  • 53
    • 26444552906 scopus 로고    scopus 로고
    • Functional plasticity in the substrate binding site of beta-secretase
    • Gorfe AA, Caflisch A. 2005. Functional plasticity in the substrate binding site of beta-secretase. Structure 13:1487-1498.
    • (2005) Structure , vol.13 , pp. 1487-1498
    • Gorfe, A.A.1    Caflisch, A.2
  • 55
    • 33745052352 scopus 로고    scopus 로고
    • Development of BACE1 inhibitors for Alzheimer's disease
    • Guo T, Hobbs DW. 2006. Development of BACE1 inhibitors for Alzheimer's disease. Curr Med Chem 13:1811-1829.
    • (2006) Curr Med Chem , vol.13 , pp. 1811-1829
    • Guo, T.1    Hobbs, D.W.2
  • 56
    • 34247893953 scopus 로고    scopus 로고
    • Design, synthesis, and evaluation of tetrahy- droquinoline and pyrrolidine sulfonamide carbamates as gamma- secretase inhibitors
    • Guo T, Gu H, Hobbs DW, Rokosz LL, Stauffer TM, Jacob B, Clader JW. 2007. Design, synthesis, and evaluation of tetrahy- droquinoline and pyrrolidine sulfonamide carbamates as gamma- secretase inhibitors. Bioorg Med Chem Lett 17:3010-3013.
    • (2007) Bioorg Med Chem Lett , vol.17 , pp. 3010-3013
    • Guo, T.1    Gu, H.2    Hobbs, D.W.3    Rokosz, L.L.4    Stauffer, T.M.5    Jacob, B.6    Clader, J.W.7
  • 61
    • 33746766250 scopus 로고    scopus 로고
    • Structure-based design and synthesis of macroheterocyclic peptidomimetic inhibitors of the aspartic protease beta-site amyloid precursor protein cleaving enzyme (BACE)
    • Hanessian S, Yang G, Rondeau JM, Neumann U, Betschart C, Tintelnot-Blomley M. 2006. Structure-based design and synthesis of macroheterocyclic peptidomimetic inhibitors of the aspartic protease beta-site amyloid precursor protein cleaving enzyme (BACE). J Med Chem 49:4544-4567.
    • (2006) J Med Chem , vol.49 , pp. 4544-4567
    • Hanessian, S.1    Yang, G.2    Rondeau, J.M.3    Neumann, U.4    Betschart, C.5    Tintelnot-Blomley, M.6
  • 63
    • 0026597063 scopus 로고
    • Alzheimer's disease: The amyloid cascade hypothesis
    • Hardy JA, Higgins GA. 1992. Alzheimer's disease: the amyloid cascade hypothesis. Science 256:184-185.
    • (1992) Science , vol.256 , pp. 184-185
    • Hardy, J.A.1    Higgins, G.A.2
  • 64
    • 0037135111 scopus 로고    scopus 로고
    • The amyloid hypothesis of Alzheimer's disease: Progress and problems on the road to therapeutics
    • Hardy J, Selkoe DJ. 2002. The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics. Science 297:353-356.
    • (2002) Science , vol.297 , pp. 353-356
    • Hardy, J.1    Selkoe, D.J.2
  • 65
    • 64349109958 scopus 로고    scopus 로고
    • Harrison B, Kreft A, Alimardanov A, Antane M, Aschmies S, Atchison K, Casebier D, Chlenov M, Cole DC, Comery T, et al. 2006. Design and synthesis of potent gamma secretase inhibitors for the disease-modifying treatment of Alzheimer's Disease. Abstracts of Papers, 232nd ACS National Meeting, San Francisco, CA, September 10-14, 2006:MEDI-288.
    • Harrison B, Kreft A, Alimardanov A, Antane M, Aschmies S, Atchison K, Casebier D, Chlenov M, Cole DC, Comery T, et al. 2006. Design and synthesis of potent gamma secretase inhibitors for the disease-modifying treatment of Alzheimer's Disease. Abstracts of Papers, 232nd ACS National Meeting, San Francisco, CA, September 10-14, 2006:MEDI-288.
  • 67
    • 20444481683 scopus 로고    scopus 로고
    • A novel transmem- brane topology of presenilin based on reconciling experimental and computational evidence
    • Henricson A, Kall L, Sonnhammer EL. 2005. A novel transmem- brane topology of presenilin based on reconciling experimental and computational evidence. FEBS J 272:2727-2733.
    • (2005) FEBS J , vol.272 , pp. 2727-2733
    • Henricson, A.1    Kall, L.2    Sonnhammer, E.L.3
  • 68
    • 34447627333 scopus 로고    scopus 로고
    • Progress toward a practical BACE-1 inhibitor
    • Hills ID, Vacca JP. 2007. Progress toward a practical BACE-1 inhibitor. Curr Opin Drug Discov Dev 10:383-391.
    • (2007) Curr Opin Drug Discov Dev , vol.10 , pp. 383-391
    • Hills, I.D.1    Vacca, J.P.2
  • 69
    • 0001828363 scopus 로고    scopus 로고
    • Holloway MK. 1998. A priori prediction of ligand affinity by energy minimization. Perspect. Drug Discovery Des. 9/10/11(3D QSAR in Drug Design: Ligand/Protein Interactions and Molecular Similarity):63-84.
    • Holloway MK. 1998. A priori prediction of ligand affinity by energy minimization. Perspect. Drug Discovery Des. 9/10/11(3D QSAR in Drug Design: Ligand/Protein Interactions and Molecular Similarity):63-84.
  • 71
    • 64349085230 scopus 로고    scopus 로고
    • Holloway MK, Culberson JC, Shpungin J, Munshi S, Coburn CA, Stachel SJ, Jones KG, Loutzenhiser E, Gregro AR, Lai M-T, et al. 2004. Evaluating scoring functions for docking and designing b-secretase inhibitors. Abstracts of Papers, 228th ACS National Meeting, Philadelphia, PA, United States, August 22-26, 2004: COMP-024.
    • Holloway MK, Culberson JC, Shpungin J, Munshi S, Coburn CA, Stachel SJ, Jones KG, Loutzenhiser E, Gregro AR, Lai M-T, et al. 2004. Evaluating scoring functions for docking and designing b-secretase inhibitors. Abstracts of Papers, 228th ACS National Meeting, Philadelphia, PA, United States, August 22-26, 2004: COMP-024.
  • 76
    • 0034613320 scopus 로고    scopus 로고
    • Structure of the protease domain of memapsin 2 (beta-secretase) complexed with inhibitor
    • Hong L, Koelsch G, Lin X, Wu S, Terzyan S, Ghosh AK, Zhang XC, Tang J. 2000. Structure of the protease domain of memapsin 2 (beta-secretase) complexed with inhibitor. Science 290:150-153.
    • (2000) Science , vol.290 , pp. 150-153
    • Hong, L.1    Koelsch, G.2    Lin, X.3    Wu, S.4    Terzyan, S.5    Ghosh, A.K.6    Zhang, X.C.7    Tang, J.8
  • 79
    • 7444257387 scopus 로고    scopus 로고
    • Efficient evaluation of binding free energy using continuum electrostatics solvation
    • Huang D, Caflisch A. 2004. Efficient evaluation of binding free energy using continuum electrostatics solvation. J Med Chem 47:5791-5797.
    • (2004) J Med Chem , vol.47 , pp. 5791-5797
    • Huang, D.1    Caflisch, A.2
  • 81
    • 64349090707 scopus 로고    scopus 로고
    • Subtle changes in substrate presentation may explain both pathogenesis and therapeutic modulation of g-secretase. Target Specific Seminars in Drug Discovery
    • Berlin, Germany
    • Hunt P, Wrigley JD, Shearman M, Beher D, Lewis H, Ellis S, Selway J, Clarke E, Ecclestone T, Nunn E, et al. 2006. Subtle changes in substrate presentation may explain both pathogenesis and therapeutic modulation of g-secretase. Target Specific Seminars in Drug Discovery, IBC Drug Discovery Series April 24-26, 2006; Berlin, Germany.
    • (2006) IBC Drug Discovery Series April , vol.24-26
    • Hunt, P.1    Wrigley, J.D.2    Shearman, M.3    Beher, D.4    Lewis, H.5    Ellis, S.6    Selway, J.7    Clarke, E.8    Ecclestone, T.9    Nunn, E.10
  • 83
    • 33846261909 scopus 로고    scopus 로고
    • Oral administration of a potent and selective non-peptidic BACE-1 inhibitor decreases beta-cleavage of amyloid precursor protein and amyloid-beta production in vivo
    • Hussain I, Hawkins J, Harrison D, Hille C, Wayne G, Cutler L, Buck T, Walter D, Demont E, Howes C, et al. 2007. Oral administration of a potent and selective non-peptidic BACE-1 inhibitor decreases beta-cleavage of amyloid precursor protein and amyloid-beta production in vivo. J Neurochem 100:802-809.
    • (2007) J Neurochem , vol.100 , pp. 802-809
    • Hussain, I.1    Hawkins, J.2    Harrison, D.3    Hille, C.4    Wayne, G.5    Cutler, L.6    Buck, T.7    Walter, D.8    Demont, E.9    Howes, C.10
  • 84
    • 0026005186 scopus 로고
    • Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism
    • Hyland LJ, Tomaszek Jr TA, Meek TD. 1991. Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism. Biochemistry 30:8454-8463.
    • (1991) Biochemistry , vol.30 , pp. 8454-8463
    • Hyland, L.J.1    Tomaszek Jr, T.A.2    Meek, T.D.3
  • 87
    • 34250336128 scopus 로고    scopus 로고
    • Abeta42 overproduction associated with structural changes in the catalytic pore of gamma-secretase: Common effects of Pen-2 N-terminal elongation and fenofibrate
    • Isoo N, Sato C, Miyashita H, Shinohara M, Takasugi N, Morohashi Y, Tsuji S, Tomita T, Iwatsubo T. 2007. Abeta42 overproduction associated with structural changes in the catalytic pore of gamma-secretase: common effects of Pen-2 N-terminal elongation and fenofibrate. J Biol Chem 282:12388-12396.
    • (2007) J Biol Chem , vol.282 , pp. 12388-12396
    • Isoo, N.1    Sato, C.2    Miyashita, H.3    Shinohara, M.4    Takasugi, N.5    Morohashi, Y.6    Tsuji, S.7    Tomita, T.8    Iwatsubo, T.9
  • 90
    • 47249163282 scopus 로고    scopus 로고
    • Molecular models of the interface between anterior pharynx- defective protein 1 (APH-1) and presenilin involving GxxxG motifs
    • Jozwiak K, Krzysko KA, Bojarski L, Gacia M, Filipek S. 2008. Molecular models of the interface between anterior pharynx- defective protein 1 (APH-1) and presenilin involving GxxxG motifs. ChemMedChem 3:627-634.
    • (2008) ChemMedChem , vol.3 , pp. 627-634
    • Jozwiak, K.1    Krzysko, K.A.2    Bojarski, L.3    Gacia, M.4    Filipek, S.5
  • 91
    • 33750151419 scopus 로고    scopus 로고
    • Assembly, trafficking and function of gamma-secretase
    • Kaether C, Haass C, Steiner H. 2006. Assembly, trafficking and function of gamma-secretase. Neurodegener Dis 3:275-283.
    • (2006) Neurodegener Dis , vol.3 , pp. 275-283
    • Kaether, C.1    Haass, C.2    Steiner, H.3
  • 92
    • 0002709663 scopus 로고    scopus 로고
    • Hessian-free low-mode conforma- tional search for large-scale protein loop optimization: Application to c-jun N-terminal kinase JNK3
    • Kolossvary I, Keserü GM. 2001. Hessian-free low-mode conforma- tional search for large-scale protein loop optimization: application to c-jun N-terminal kinase JNK3. J Comp Chem 22:21-30.
    • (2001) J Comp Chem , vol.22 , pp. 21-30
    • Kolossvary, I.1    Keserü, G.M.2
  • 95
    • 33745152311 scopus 로고    scopus 로고
    • Deducing the transmembrane domain organization of presenilin-1 in gamma- secretase by cysteine disulfide cross-linking
    • Kornilova AY, Kim J, Laudon H, Wolfe MS. 2006. Deducing the transmembrane domain organization of presenilin-1 in gamma- secretase by cysteine disulfide cross-linking. Biochemistry 45:7598-7604.
    • (2006) Biochemistry , vol.45 , pp. 7598-7604
    • Kornilova, A.Y.1    Kim, J.2    Laudon, H.3    Wolfe, M.S.4
  • 100
    • 33646483640 scopus 로고    scopus 로고
    • Electron microscopic structure of purified, active gamma- secretase reveals an aqueous intramembrane chamber and two pores
    • Lazarov VK, Fraering PC, Ye W, Wolfe MS, Selkoe DJ, Li H. 2006. Electron microscopic structure of purified, active gamma- secretase reveals an aqueous intramembrane chamber and two pores. Proc Natl Acad Sci USA 103:6889-6894.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6889-6894
    • Lazarov, V.K.1    Fraering, P.C.2    Ye, W.3    Wolfe, M.S.4    Selkoe, D.J.5    Li, H.6
  • 102
    • 33846449879 scopus 로고    scopus 로고
    • Unnatural amino acid-substituted (hydroxyethyl) urea peptidomimetics inhibit gamma-secretase and promote the neuronal differentiation of neuroblastoma cells
    • Liao YF, Wang BJ, Hsu WM, Lee H, Liao CY, Wu SY, Cheng HT, Hu MK. 2007. Unnatural amino acid-substituted (hydroxyethyl) urea peptidomimetics inhibit gamma-secretase and promote the neuronal differentiation of neuroblastoma cells. Mol Pharmacol 71:588-601.
    • (2007) Mol Pharmacol , vol.71 , pp. 588-601
    • Liao, Y.F.1    Wang, B.J.2    Hsu, W.M.3    Lee, H.4    Liao, C.Y.5    Wu, S.Y.6    Cheng, H.T.7    Hu, M.K.8
  • 104
    • 0034652309 scopus 로고    scopus 로고
    • Human aspartic protease memapsin 2 cleaves the beta-secretase site of beta-amyloid precursor protein
    • Lin X, Koelsch G, Wu S, Downs D, Dashti A, Tang J. 2000. Human aspartic protease memapsin 2 cleaves the beta-secretase site of beta-amyloid precursor protein. Proc Natl Acad Sci USA 97:1456-1460.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1456-1460
    • Lin, X.1    Koelsch, G.2    Wu, S.3    Downs, D.4    Dashti, A.5    Tang, J.6
  • 109
    • 34548448617 scopus 로고    scopus 로고
    • Structure-guided design of b-secretase (BACE-1) inhibitors
    • McGaughey GB, Holloway MK. 2007. Structure-guided design of b-secretase (BACE-1) inhibitors. Expert Opin Drug Discov 2:1129-1138.
    • (2007) Expert Opin Drug Discov , vol.2 , pp. 1129-1138
    • McGaughey, G.B.1    Holloway, M.K.2
  • 110
    • 33749266178 scopus 로고    scopus 로고
    • A method for induced-fit docking, scoring, and ranking of flexible ligands. Application to peptidic and pseudopeptidic beta-secretase (BACE 1) inhibitors
    • Moitessier N, Therrien E, Hanessian S. 2006. A method for induced-fit docking, scoring, and ranking of flexible ligands. Application to peptidic and pseudopeptidic beta-secretase (BACE 1) inhibitors. J Med Chem 49:5885-5894.
    • (2006) J Med Chem , vol.49 , pp. 5885-5894
    • Moitessier, N.1    Therrien, E.2    Hanessian, S.3
  • 111
    • 33744949267 scopus 로고    scopus 로고
    • C-terminal fragment of presenilin is the molecular target of a dipeptidic gamma-secretase-specific inhibitor DAPT (N-[N- (3,5-difluorophenacetyl)-L-alanyl]-S-phenylglycine t-butyl ester)
    • Morohashi Y, Kan T, Tominari Y, Fuwa H, Okamura Y, Watanabe N, Sato C, Natsugari H, Fukuyama T, Iwatsubo T, et al. 2006. C-terminal fragment of presenilin is the molecular target of a dipeptidic gamma-secretase-specific inhibitor DAPT (N-[N- (3,5-difluorophenacetyl)-L-alanyl]-S-phenylglycine t-butyl ester). J Biol Chem 281:14670-14676.
    • (2006) J Biol Chem , vol.281 , pp. 14670-14676
    • Morohashi, Y.1    Kan, T.2    Tominari, Y.3    Fuwa, H.4    Okamura, Y.5    Watanabe, N.6    Sato, C.7    Natsugari, H.8    Fukuyama, T.9    Iwatsubo, T.10
  • 114
    • 0037420987 scopus 로고    scopus 로고
    • Synthesis and gamma-secretase activity of APP substrate-based hydroxyethylene dipeptide isosteres
    • Nadin A, Owens AP, Castro JL, Harrison T, Shearman MS. 2003. Synthesis and gamma-secretase activity of APP substrate-based hydroxyethylene dipeptide isosteres. Bioorg Med Chem Lett 13:37-41.
    • (2003) Bioorg Med Chem Lett , vol.13 , pp. 37-41
    • Nadin, A.1    Owens, A.P.2    Castro, J.L.3    Harrison, T.4    Shearman, M.S.5
  • 115
    • 33845931855 scopus 로고    scopus 로고
    • Scaffold of the cyclooxygenase-2 (COX-2) inhibitor carprofen provides Alzheimer gamma-secretase modulators
    • Narlawar R, Perez Revuelta BI, Haass C, Steiner H, Schmidt B, Baumann K. 2006. Scaffold of the cyclooxygenase-2 (COX-2) inhibitor carprofen provides Alzheimer gamma-secretase modulators. J Med Chem 49:7588-7591.
    • (2006) J Med Chem , vol.49 , pp. 7588-7591
    • Narlawar, R.1    Perez Revuelta, B.I.2    Haass, C.3    Steiner, H.4    Schmidt, B.5    Baumann, K.6
  • 117
    • 24144441220 scopus 로고    scopus 로고
    • The influence of conformational fluctuations on enzymatic activity: Modelling the functional motion of b-secretase
    • Neri M, Cascella M, Micheletti C. 2005. The influence of conformational fluctuations on enzymatic activity: modelling the functional motion of b-secretase. J Phys Condens Matter 17:S1581-S1593.
    • (2005) J Phys Condens Matter , vol.17
    • Neri, M.1    Cascella, M.2    Micheletti, C.3
  • 120
    • 28844509722 scopus 로고    scopus 로고
    • Crystal structure of human BACE2 in complex with a hydroxyethylamine transition-state inhibitor
    • Ostermann N, Eder J, Eidhoff Uea. 2006. Crystal structure of human BACE2 in complex with a hydroxyethylamine transition-state inhibitor. J Mol Biol 355:249-261.
    • (2006) J Mol Biol , vol.355 , pp. 249-261
    • Ostermann, N.1    Eder, J.2    Uea, E.3
  • 121
    • 0347694970 scopus 로고    scopus 로고
    • Determination of the active site protonation state of beta-secretase from molecular dynamics simulation and docking experiment: Implications for structure-based inhibitor design
    • Park H, Lee S. 2003. Determination of the active site protonation state of beta-secretase from molecular dynamics simulation and docking experiment: implications for structure-based inhibitor design. J Am Chem Soc 125:16416-16422.
    • (2003) J Am Chem Soc , vol.125 , pp. 16416-16422
    • Park, H.1    Lee, S.2
  • 123
    • 4644364822 scopus 로고    scopus 로고
    • Apo and inhibitor complex structures of BACE (beta-secretase)
    • Patel S, Vuillard L, Cleasby A, Murray CW, Yon J. 2004. Apo and inhibitor complex structures of BACE (beta-secretase). J Mol Biol 343:407-416.
    • (2004) J Mol Biol , vol.343 , pp. 407-416
    • Patel, S.1    Vuillard, L.2    Cleasby, A.3    Murray, C.W.4    Yon, J.5
  • 125
    • 84869263522 scopus 로고    scopus 로고
    • Pissarnitski D, Zhao Z, Asberom T, Bara T, Clader JW, Greenlee WJ, Guzik H, Hyde L, Josien H, Li W, et al. 2006. Cyclic sulfonamides as γ-secretase inhibitors for the treatment of Alzheimer's disease. Abstracts of Papers, 232nd ACS National Meeting, San Francisco, CA, United States, September 10-14, 2006:MEDI-287.
    • Pissarnitski D, Zhao Z, Asberom T, Bara T, Clader JW, Greenlee WJ, Guzik H, Hyde L, Josien H, Li W, et al. 2006. Cyclic sulfonamides as γ-secretase inhibitors for the treatment of Alzheimer's disease. Abstracts of Papers, 232nd ACS National Meeting, San Francisco, CA, United States, September 10-14, 2006:MEDI-287.
  • 127
    • 20144369541 scopus 로고    scopus 로고
    • Virtual screening for beta-secretase (BACE1) inhibitors reveals the importance of protonation states at Asp32 and Asp228
    • Polgár T, Keserü GM. 2005. Virtual screening for beta-secretase (BACE1) inhibitors reveals the importance of protonation states at Asp32 and Asp228. J Med Chem 48:3749-3755.
    • (2005) J Med Chem , vol.48 , pp. 3749-3755
    • Polgár, T.1    Keserü, G.M.2
  • 128
    • 33746924045 scopus 로고    scopus 로고
    • Ensemble docking into flexible active sites. Critical evaluation of FlexE against JNK-3 and beta- secretase
    • Polgar T, Keserü GM. 2006. Ensemble docking into flexible active sites. Critical evaluation of FlexE against JNK-3 and beta- secretase. J Chem Inf Model 46:1795-1805.
    • (2006) J Chem Inf Model , vol.46 , pp. 1795-1805
    • Polgar, T.1    Keserü, G.M.2
  • 129
    • 37249043664 scopus 로고    scopus 로고
    • Impact of ligand protonation on virtual screening against beta-secretase (BACE1)
    • Polgár T, Magyar C, Simon I, Keserü GM. 2007. Impact of ligand protonation on virtual screening against beta-secretase (BACE1). J Chem Inf Model 47:2366-2373.
    • (2007) J Chem Inf Model , vol.47 , pp. 2366-2373
    • Polgár, T.1    Magyar, C.2    Simon, I.3    Keserü, G.M.4
  • 130
    • 34250365682 scopus 로고    scopus 로고
    • Discovery of (S)-2-((S)-2-(3,5- difluorophenyl)-2-hydroxyacetamido)-N-((S,Z)- 3-methyl-4-oxo-4,5-dihydro-3H- benzo[d][1,2]diazepin-5-yl)propan- amide (BMS-433796): A gamma-secretase inhibitor with Abeta lowering activity in a transgenic mouse model of Alzheimer's disease
    • Prasad CV, Zheng M, Vig S, Bergstrom C, Smith DW, Gao Q, Yeola S, Polson CT, Corsa JA, Guss VL, et al. 2007. Discovery of (S)-2-((S)-2-(3,5- difluorophenyl)-2-hydroxyacetamido)-N-((S,Z)- 3-methyl-4-oxo-4,5-dihydro-3H- benzo[d][1,2]diazepin-5-yl)propan- amide (BMS-433796): a gamma-secretase inhibitor with Abeta lowering activity in a transgenic mouse model of Alzheimer's disease. Bioorg Med Chem Lett 17:4006-4011.
    • (2007) Bioorg Med Chem Lett , vol.17 , pp. 4006-4011
    • Prasad, C.V.1    Zheng, M.2    Vig, S.3    Bergstrom, C.4    Smith, D.W.5    Gao, Q.6    Yeola, S.7    Polson, C.T.8    Corsa, J.A.9    Guss, V.L.10
  • 131
    • 64349088804 scopus 로고    scopus 로고
    • Pu J, Resnick L, Aschmies S, Atchison K, Berkowitz J, Caggiano TJ, Chlenov M, Diamantidis G, Harrison B, Hu Y, et al. 2007. Synthesis of small molecule g-secretase inhibitors for Alzheimer's disease. Abstracts of Papers, 233rd ACS National Meeting, Chicago, IL, United States, March 25-29, 2007:MEDI-306.
    • Pu J, Resnick L, Aschmies S, Atchison K, Berkowitz J, Caggiano TJ, Chlenov M, Diamantidis G, Harrison B, Hu Y, et al. 2007. Synthesis of small molecule g-secretase inhibitors for Alzheimer's disease. Abstracts of Papers, 233rd ACS National Meeting, Chicago, IL, United States, March 25-29, 2007:MEDI-306.
  • 132
    • 4444231432 scopus 로고    scopus 로고
    • Modeling the binding affinities of beta-secretase inhibitors: Application to subsite specificity
    • Rajamani R, Reynolds CH. 2004a. Modeling the binding affinities of beta-secretase inhibitors: application to subsite specificity. Bioorg Med Chem Lett 14:4843-4846.
    • (2004) Bioorg Med Chem Lett , vol.14 , pp. 4843-4846
    • Rajamani, R.1    Reynolds, C.H.2
  • 133
    • 4744338363 scopus 로고    scopus 로고
    • Modeling the protonation states of the catalytic aspartates in beta-secretase
    • Rajamani R, Reynolds CH. 2004b. Modeling the protonation states of the catalytic aspartates in beta-secretase. J Med Chem 47:5159-5166.
    • (2004) J Med Chem , vol.47 , pp. 5159-5166
    • Rajamani, R.1    Reynolds, C.H.2
  • 135
    • 64349091566 scopus 로고    scopus 로고
    • Ramsden N, Wilson F, Reid A, Reader V, Miller W, Harrison RJ, Sunose M, Hernandez-Perni R, Major J, Boussard C, et al, Cellzome AG, Germany, Assignee. 2006. Biphenyl-carboxylic acids and derivatives thereof and their preparations, pharmaceutical compositions, g-secretase-modulating activity, and use in therapy and treatment of Alzheimer's disease. WO patent 2006021441
    • Ramsden N, Wilson F, Reid A, Reader V, Miller W, Harrison RJ, Sunose M, Hernandez-Perni R, Major J, Boussard C, et al. (Cellzome AG, Germany). Assignee. 2006. Biphenyl-carboxylic acids and derivatives thereof and their preparations, pharmaceutical compositions, g-secretase-modulating activity, and use in therapy and treatment of Alzheimer's disease. WO patent 2006021441.
  • 136
    • 33646849102 scopus 로고    scopus 로고
    • Computational approaches to the prediction of blood-brain barrier permeability: A comparative analysis of central nervous system drugs versus secretase inhibitors for Alzheimer's disease
    • Rishton GM, LaBonte K, Williams AJ, Kassam K, Kolovanov E. 2006. Computational approaches to the prediction of blood-brain barrier permeability: a comparative analysis of central nervous system drugs versus secretase inhibitors for Alzheimer's disease. Curr Opin Drug Discov Dev 9:303-313.
    • (2006) Curr Opin Drug Discov Dev , vol.9 , pp. 303-313
    • Rishton, G.M.1    LaBonte, K.2    Williams, A.J.3    Kassam, K.4    Kolovanov, E.5
  • 138
    • 27744547707 scopus 로고    scopus 로고
    • Macrocyclic peptidomimetic inhibitors of b-secretase (BACE): First X-ray structure of a macrocyclic peptidomimetic-BACE complex
    • Rojo I, Martin JA, Broughton H, Timm D, Erickson J, Yang HC, McCarthy JR. 2006. Macrocyclic peptidomimetic inhibitors of b-secretase (BACE): first X-ray structure of a macrocyclic peptidomimetic-BACE complex. Bioorg Med Chem Lett 16:191-195.
    • (2006) Bioorg Med Chem Lett , vol.16 , pp. 191-195
    • Rojo, I.1    Martin, J.A.2    Broughton, H.3    Timm, D.4    Erickson, J.5    Yang, H.C.6    McCarthy, J.R.7
  • 139
    • 38549155452 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship modeling of gamma- secretase inhibitors using molecular field analysis
    • Sammi T, Silakari O, Ravikumar M. 2008. Three-dimensional quantitative structure-activity relationship modeling of gamma- secretase inhibitors using molecular field analysis. Chem Biol Drug Des 71:155-166.
    • (2008) Chem Biol Drug Des , vol.71 , pp. 155-166
    • Sammi, T.1    Silakari, O.2    Ravikumar, M.3
  • 140
    • 33751087756 scopus 로고    scopus 로고
    • Structure of the catalytic pore of gamma-secretase probed by the accessibility of substituted cysteines
    • Sato C, Morohashi Y, Tomita T, Iwatsubo T. 2006. Structure of the catalytic pore of gamma-secretase probed by the accessibility of substituted cysteines. J Neurosci 26:12081-12088.
    • (2006) J Neurosci , vol.26 , pp. 12081-12088
    • Sato, C.1    Morohashi, Y.2    Tomita, T.3    Iwatsubo, T.4
  • 141
    • 0034616960 scopus 로고    scopus 로고
    • Modeling of substrate specificity of the Alzheimer's disease amyloid precursor protein beta-secretase
    • Sauder JM, Arthur JW, Dunbrack Jr RL. 2000. Modeling of substrate specificity of the Alzheimer's disease amyloid precursor protein beta-secretase. J Mol Biol 300:241-248.
    • (2000) J Mol Biol , vol.300 , pp. 241-248
    • Sauder, J.M.1    Arthur, J.W.2    Dunbrack Jr, R.L.3
  • 142
    • 0001050325 scopus 로고    scopus 로고
    • BACE maps to chromosome 11 and a BACE homolog, BACE2, reside in the obligate down syndrome region of chromosome 21
    • Saunders AJ, Kim T-W, Tanzi RE. 1999. BACE maps to chromosome 11 and a BACE homolog, BACE2, reside in the obligate down syndrome region of chromosome 21. Science 286:1255a.
    • (1999) Science , vol.286
    • Saunders, A.J.1    Kim, T.-W.2    Tanzi, R.E.3
  • 146
    • 0035971166 scopus 로고    scopus 로고
    • Shi XP, Chen E, Yin KC, Na S, Garsky VM, Lai MT, Li YM, Platchek M, Register RB, Sardana MK, et al. 2001. The pro domain of beta-secretase does not confer strict zymogen-like properties but does assist proper folding of the protease domain. J Biol Chem 276:10366-10373.
    • Shi XP, Chen E, Yin KC, Na S, Garsky VM, Lai MT, Li YM, Platchek M, Register RB, Sardana MK, et al. 2001. The pro domain of beta-secretase does not confer strict zymogen-like properties but does assist proper folding of the protease domain. J Biol Chem 276:10366-10373.
  • 147
    • 44349184966 scopus 로고    scopus 로고
    • Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production
    • Shimizu H, Tosaki A, Kaneko K, Hisano T, Sakurai T, Nukina N. 2008. Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production. Mol Cell Biol 28:3663-3671.
    • (2008) Mol Cell Biol , vol.28 , pp. 3663-3671
    • Shimizu, H.1    Tosaki, A.2    Kaneko, K.3    Hisano, T.4    Sakurai, T.5    Nukina, N.6
  • 148
    • 0344927114 scopus 로고    scopus 로고
    • KMI-008, a novel beta-secretase inhibitor containing a hydroxymethyl- carbonyl isostere as a transition-state mimic: Design and synthesis of substrate-based octapeptides
    • Shuto D, Kasai S, Kimura T, Liu P, Hidaka K, Hamada T, Shibakawa S, Hayashi Y, Hattori C, Szabo B, et al. 2003. KMI-008, a novel beta-secretase inhibitor containing a hydroxymethyl- carbonyl isostere as a transition-state mimic: design and synthesis of substrate-based octapeptides. Bioorg Med Chem Lett 13:4273-4276.
    • (2003) Bioorg Med Chem Lett , vol.13 , pp. 4273-4276
    • Shuto, D.1    Kasai, S.2    Kimura, T.3    Liu, P.4    Hidaka, K.5    Hamada, T.6    Shibakawa, S.7    Hayashi, Y.8    Hattori, C.9    Szabo, B.10
  • 149
    • 34248353880 scopus 로고    scopus 로고
    • Pro-domain removal in ASP-2 and the cleavage of the amyloid precursor are influenced by pH
    • Sidera C, Liu C, Austen B. 2002. Pro-domain removal in ASP-2 and the cleavage of the amyloid precursor are influenced by pH. BMC Biochem 3:25.
    • (2002) BMC Biochem , vol.3 , pp. 25
    • Sidera, C.1    Liu, C.2    Austen, B.3
  • 157
    • 0035816492 scopus 로고    scopus 로고
    • Three novel alternatively spliced isoforms of the human beta-site amyloid precursor protein cleaving enzyme (BACE) and their effect on amyloid beta- peptide production
    • Tanahashi H, Tabira T. 2001. Three novel alternatively spliced isoforms of the human beta-site amyloid precursor protein cleaving enzyme (BACE) and their effect on amyloid beta- peptide production. Neurosci Lett 307:9-12.
    • (2001) Neurosci Lett , vol.307 , pp. 9-12
    • Tanahashi, H.1    Tabira, T.2
  • 158
    • 33845767391 scopus 로고    scopus 로고
    • Novel modulators of amyloid-beta precursor protein processing
    • Tang BL, Liou YC. 2007. Novel modulators of amyloid-beta precursor protein processing. J Neurochem 100:314-323.
    • (2007) J Neurochem , vol.100 , pp. 314-323
    • Tang, B.L.1    Liou, Y.C.2
  • 160
    • 33748743559 scopus 로고    scopus 로고
    • Contribution of presenilin transmembrane domains 6 and 7 to a water-containing cavity in the gamma-secretase complex
    • Tolia A, Chavez-Gutierrez L, De Strooper B. 2006. Contribution of presenilin transmembrane domains 6 and 7 to a water-containing cavity in the gamma-secretase complex. J Biol Chem 281:27633-27642.
    • (2006) J Biol Chem , vol.281 , pp. 27633-27642
    • Tolia, A.1    Chavez-Gutierrez, L.2    De Strooper, B.3
  • 161
    • 0038136955 scopus 로고    scopus 로고
    • Kinetic studies on beta-site amyloid precursor protein-cleaving enzyme (BACE). Confirmation of an iso mechanism
    • Toulokhonova L, Metzler WJ, Witmer MR, Copeland RA, Marcinkeviciene J. 2003. Kinetic studies on beta-site amyloid precursor protein-cleaving enzyme (BACE). Confirmation of an iso mechanism. J Biol Chem 278:4582-4589.
    • (2003) J Biol Chem , vol.278 , pp. 4582-4589
    • Toulokhonova, L.1    Metzler, W.J.2    Witmer, M.R.3    Copeland, R.A.4    Marcinkeviciene, J.5
  • 162
    • 0038704856 scopus 로고    scopus 로고
    • Calculation of the binding affinity of beta-secretase inhibitors using the linear interaction energy method
    • Tounge BA, Reynolds CH. 2003. Calculation of the binding affinity of beta-secretase inhibitors using the linear interaction energy method. J Med Chem 46:2074-2082.
    • (2003) J Med Chem , vol.46 , pp. 2074-2082
    • Tounge, B.A.1    Reynolds, C.H.2
  • 163
    • 33645923414 scopus 로고    scopus 로고
    • Linear interaction energy models for beta-secretase (BACE) inhibitors: Role of van der Waals, electrostatic, and continuum-solvation terms
    • Tounge BA, Rajamani R, Baxter EW, Reitz AB, Reynolds CH. 2006. Linear interaction energy models for beta-secretase (BACE) inhibitors: Role of van der Waals, electrostatic, and continuum-solvation terms. J Mol Graph Model 24:475-484.
    • (2006) J Mol Graph Model , vol.24 , pp. 475-484
    • Tounge, B.A.1    Rajamani, R.2    Baxter, E.W.3    Reitz, A.B.4    Reynolds, C.H.5
  • 166
    • 11844297294 scopus 로고    scopus 로고
    • Structural locations and functional roles of new subsites S-5, S-6, and S-7 in memapsin 2 (b-secretase)
    • Turner RT, Hong L, Koelsch G, Ghosh AK, Tang J. 2005. Structural locations and functional roles of new subsites S-5, S-6, and S-7 in memapsin 2 (b-secretase). Biochemistry 44:105-112.
    • (2005) Biochemistry , vol.44 , pp. 105-112
    • Turner, R.T.1    Hong, L.2    Koelsch, G.3    Ghosh, A.K.4    Tang, J.5
  • 169
    • 34447256355 scopus 로고    scopus 로고
    • The search for drug leads targeted to the b-secretase: An example of the roles of computer assisted approaches in drug discovery
    • Villaverde MC, Gonzalez-Louro L, Sussman F. 2007. The search for drug leads targeted to the b-secretase: an example of the roles of computer assisted approaches in drug discovery. Curr Topics Med Chem 7:980-990.
    • (2007) Curr Topics Med Chem , vol.7 , pp. 980-990
    • Villaverde, M.C.1    Gonzalez-Louro, L.2    Sussman, F.3
  • 170
    • 33750886311 scopus 로고    scopus 로고
    • Crystal structure of a rhomboid family intramembrane protease
    • Wang Y, Zhang Y, Ha Y. 2006. Crystal structure of a rhomboid family intramembrane protease. Nature 444:179-180.
    • (2006) Nature , vol.444 , pp. 179-180
    • Wang, Y.1    Zhang, Y.2    Ha, Y.3
  • 171
    • 0029757151 scopus 로고    scopus 로고
    • Solution NMR evidence that the HIV- 1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272
    • Wang Y-X, Freedberg DI, Yamazaki T, Wingfield PT, Stahl SJ, Kaufman JD, Kiso Y, Torchia DA. 1996. Solution NMR evidence that the HIV- 1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272. Biochemistry 35:9945-9950.
    • (1996) Biochemistry , vol.35 , pp. 9945-9950
    • Wang, Y.-X.1    Freedberg, D.I.2    Yamazaki, T.3    Wingfield, P.T.4    Stahl, S.J.5    Kaufman, J.D.6    Kiso, Y.7    Torchia, D.A.8
  • 174
    • 0033551099 scopus 로고    scopus 로고
    • Peptidomimetic probes and molecular modelling suggest that Alzheimer's g-secretase is an intramembrane-cleaving aspartyl protease
    • Wolfe MS, Xia W, Moore CL, Leatherwood DD, Ostaszewski B, Rahmati T, Donker IO, Selkoe DJ. 1999a. Peptidomimetic probes and molecular modelling suggest that Alzheimer's g-secretase is an intramembrane-cleaving aspartyl protease. Biochemistry 38:4720-4727.
    • (1999) Biochemistry , vol.38 , pp. 4720-4727
    • Wolfe, M.S.1    Xia, W.2    Moore, C.L.3    Leatherwood, D.D.4    Ostaszewski, B.5    Rahmati, T.6    Donker, I.O.7    Selkoe, D.J.8
  • 175
    • 0033535553 scopus 로고    scopus 로고
    • Two transmembrane aspartates in presenilin-1 required for presenilin endoproteolysis and gamma-secretase activity
    • Wolfe MS, Xia W, Ostaszewski BL, Diehl TS, Kimberly WT, Selkoe DJ. 1999b. Two transmembrane aspartates in presenilin-1 required for presenilin endoproteolysis and gamma-secretase activity. Nature 398:513-517.
    • (1999) Nature , vol.398 , pp. 513-517
    • Wolfe, M.S.1    Xia, W.2    Ostaszewski, B.L.3    Diehl, T.S.4    Kimberly, W.T.5    Selkoe, D.J.6
  • 176
    • 11144355129 scopus 로고    scopus 로고
    • Chronic treatment with the gamma-secretase inhibitor LY- 411,575 inhibits beta-amyloid peptide production and alters lymphopoiesis and intestinal cell differentiation
    • Wong GT, Manfra D, Poulet FM, Zhang Q, Josien H, Bara T, Engstrom L, Pinzon-Ortiz M, Fine JS, Lee HJ, et al. 2004. Chronic treatment with the gamma-secretase inhibitor LY- 411,575 inhibits beta-amyloid peptide production and alters lymphopoiesis and intestinal cell differentiation. J Biol Chem 279:12876-12882.
    • (2004) J Biol Chem , vol.279 , pp. 12876-12882
    • Wong, G.T.1    Manfra, D.2    Poulet, F.M.3    Zhang, Q.4    Josien, H.5    Bara, T.6    Engstrom, L.7    Pinzon-Ortiz, M.8    Fine, J.S.9    Lee, H.J.10
  • 177
    • 33646733845 scopus 로고    scopus 로고
    • Design, synthesis, and evaluation of Leu*Ala hydroxyethylene-based non-peptide beta-secretase (BACE) inhibitors
    • Xiao K, Li X, Li J, Ma L, Hu B, Yu H, Fu Y, Wang R, Ma Z, Qiu B, et al. 2006. Design, synthesis, and evaluation of Leu*Ala hydroxyethylene-based non-peptide beta-secretase (BACE) inhibitors. Bioorg Med Chem 14:4535-4551.
    • (2006) Bioorg Med Chem , vol.14 , pp. 4535-4551
    • Xiao, K.1    Li, X.2    Li, J.3    Ma, L.4    Hu, B.5    Yu, H.6    Fu, Y.7    Wang, R.8    Ma, Z.9    Qiu, B.10
  • 178
    • 0031423107 scopus 로고    scopus 로고
    • Dissection of the pH dependence of inhibitor binding energetics for an aspartic protease: Direct measurement of the protonation states of the catalytic aspartic acid residues
    • Xie D, Gulnik S, Collins L, Gustchina E, Suvorov L, Erickson JW. 1997. Dissection of the pH dependence of inhibitor binding energetics for an aspartic protease: direct measurement of the protonation states of the catalytic aspartic acid residues. Biochemistry 36:16166-16172.
    • (1997) Biochemistry , vol.36 , pp. 16166-16172
    • Xie, D.1    Gulnik, S.2    Collins, L.3    Gustchina, E.4    Suvorov, L.5    Erickson, J.W.6
  • 180
    • 0028114966 scopus 로고
    • NMR and X-ray evidence that the HIV protease catalytic aspartyl groups are protonated in the complex formed by the protease and a non-peptide cyclic urea-based inhibitor
    • Yamazaki T, Nicholson LK, Torchia DA, Wingfield P, Stahl SJ, Kaufman JD, Eyermann CJ, Hodge CN, Lam PYS, Ru Y, et al. 1994. NMR and X-ray evidence that the HIV protease catalytic aspartyl groups are protonated in the complex formed by the protease and a non-peptide cyclic urea-based inhibitor. J Am Chem Soc 116:10791-10792.
    • (1994) J Am Chem Soc , vol.116 , pp. 10791-10792
    • Yamazaki, T.1    Nicholson, L.K.2    Torchia, D.A.3    Wingfield, P.4    Stahl, S.J.5    Kaufman, J.D.6    Eyermann, C.J.7    Hodge, C.N.8    Lam, P.Y.S.9    Ru, Y.10
  • 183
    • 33751504561 scopus 로고    scopus 로고
    • Assigning the protonation states of the key aspartates in b- secretase using QM/MM X-ray structure refinement
    • Yu N, Hayik SA, Wang B, Liao N, Reynolds CH, Merz Jr KM. 2006. Assigning the protonation states of the key aspartates in b- secretase using QM/MM X-ray structure refinement. J Chem Theory Comput 2:1057-1069.
    • (2006) J Chem Theory Comput , vol.2 , pp. 1057-1069
    • Yu, N.1    Hayik, S.A.2    Wang, B.3    Liao, N.4    Reynolds, C.H.5    Merz Jr, K.M.6
  • 184
    • 33947288917 scopus 로고    scopus 로고
    • Regulation of gamma-secretase activity in Alzheimer's disease
    • Zhou S, Zhou H, Walian PJ, Jap BK. 2007. Regulation of gamma-secretase activity in Alzheimer's disease. Biochemistry 46:2553-2563.
    • (2007) Biochemistry , vol.46 , pp. 2553-2563
    • Zhou, S.1    Zhou, H.2    Walian, P.J.3    Jap, B.K.4
  • 185
    • 13844312018 scopus 로고    scopus 로고
    • Molecular docking and 3D-QSAR studies on the binding mechanism of statine-based peptidomimetics with beta-secretase
    • Zuo Z, Luo X, Zhu W, Shen J, Shen X, Jiang H, Chen K. 2005. Molecular docking and 3D-QSAR studies on the binding mechanism of statine-based peptidomimetics with beta-secretase. Bioorg Med Chem 13:2121-2131.
    • (2005) Bioorg Med Chem , vol.13 , pp. 2121-2131
    • Zuo, Z.1    Luo, X.2    Zhu, W.3    Shen, J.4    Shen, X.5    Jiang, H.6    Chen, K.7
  • 186
    • 34248513174 scopus 로고    scopus 로고
    • Why does beta-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies
    • Zuo Z, Gang C, Zou H, Mok PC, Zhu W, Chen K, Jiang H. 2007. Why does beta-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies. Comput Biol Chem 31:186-195.
    • (2007) Comput Biol Chem , vol.31 , pp. 186-195
    • Zuo, Z.1    Gang, C.2    Zou, H.3    Mok, P.C.4    Zhu, W.5    Chen, K.6    Jiang, H.7


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