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Volumn 50, Issue 6, 2007, Pages 1124-1132

Application of fragment screening by X-ray crystallography to the discovery of aminopyridines as inhibitors of β-secretase

Author keywords

[No Author keywords available]

Indexed keywords

AMINOPYRIDINE DERIVATIVE; ASPARTIC PROTEINASE; BETA SECRETASE;

EID: 33947636525     PISSN: 00222623     EISSN: None     Source Type: Journal    
DOI: 10.1021/jm061197u     Document Type: Article
Times cited : (148)

References (46)
  • 1
    • 0037135111 scopus 로고    scopus 로고
    • The amyloid hypothesis of Alzheimer's disease: Progress and problems on the road to therapeutics
    • Hardy, J.; Selkoe, D. J. The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics. Science 2002, 297, 353-356.
    • (2002) Science , vol.297 , pp. 353-356
    • Hardy, J.1    Selkoe, D.J.2
  • 2
    • 0033613129 scopus 로고    scopus 로고
    • Cellular mechanisms of beta-amyloid production and secretion
    • Sinha, S.; Lieberburg, I. Cellular mechanisms of beta-amyloid production and secretion. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 11049-11053.
    • (1999) Proc. Natl. Acad. Sci. U.S.A , vol.96 , pp. 11049-11053
    • Sinha, S.1    Lieberburg, I.2
  • 4
    • 0034652309 scopus 로고    scopus 로고
    • Human aspartic protease memapsin 2 cleaves the beta-secretase site of beta-amyloid precursor protein
    • Lin, X.; Koelsch, G.; Wu, S.; Downs, D.; Dashti, A.; Tang, J. Human aspartic protease memapsin 2 cleaves the beta-secretase site of beta-amyloid precursor protein. Proc. Natl. Acad. Sci. U.S.A 2000, 97, 1456-1460.
    • (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 1456-1460
    • Lin, X.1    Koelsch, G.2    Wu, S.3    Downs, D.4    Dashti, A.5    Tang, J.6
  • 5
    • 0033518251 scopus 로고    scopus 로고
    • Sinha, S.; Anderson, J. P.; Barbour, R.; Basi, G. S.; Caccavello, R.; Davis, D.; Doan, M.; Dovey, H. F.; Frigon, N.; Hong, J.; Jacobson-Croak, K.; Jewett, N.; Keim, P.; Knops, J.; Lieberburg, I.; Power, M.; Tan, H.; Tatsuno, G.; Tung, J.; Schenk, D.; Seubert, P.; Suomensaari, S. M.; Wang, S.; Walker, D.; Zhao, J.; McConlogue, L.; John, V. Purification and cloning of amyloid precursor protein beta-secretase from human brain. Nature 1999, 402, 537-540.
    • Sinha, S.; Anderson, J. P.; Barbour, R.; Basi, G. S.; Caccavello, R.; Davis, D.; Doan, M.; Dovey, H. F.; Frigon, N.; Hong, J.; Jacobson-Croak, K.; Jewett, N.; Keim, P.; Knops, J.; Lieberburg, I.; Power, M.; Tan, H.; Tatsuno, G.; Tung, J.; Schenk, D.; Seubert, P.; Suomensaari, S. M.; Wang, S.; Walker, D.; Zhao, J.; McConlogue, L.; John, V. Purification and cloning of amyloid precursor protein beta-secretase from human brain. Nature 1999, 402, 537-540.
  • 9
    • 0142092495 scopus 로고    scopus 로고
    • John, V.; Beck, J. P.; Bienkowski, M. J.; Sinha, S.; Heinrikson, R. L. Human beta-secretase (BACE) and BACE inhibitors. J. Med. Chem. 2003, 46, 4625-4630.
    • John, V.; Beck, J. P.; Bienkowski, M. J.; Sinha, S.; Heinrikson, R. L. Human beta-secretase (BACE) and BACE inhibitors. J. Med. Chem. 2003, 46, 4625-4630.
  • 17
    • 32344436117 scopus 로고    scopus 로고
    • Yang, W.; Lu, W.; Lu, Y.; Zhong, M.; Sun, J.; Thomas, A. E.; Wilkinson, J. M.; Fucini, R. V.; Lam, M.; Randal, M.; Shi, X. P.; Jacobs, J. W.; McDowell, R. S.; Gordon, E. M.; Ballinger, M. D. Aminoethylenes: a tetrahedral intermediate isostere yielding potent inhibitors of the aspartyl protease BACE-1. J. Med. Chem. 2006, 49, 839-842.
    • Yang, W.; Lu, W.; Lu, Y.; Zhong, M.; Sun, J.; Thomas, A. E.; Wilkinson, J. M.; Fucini, R. V.; Lam, M.; Randal, M.; Shi, X. P.; Jacobs, J. W.; McDowell, R. S.; Gordon, E. M.; Ballinger, M. D. Aminoethylenes: a tetrahedral intermediate isostere yielding potent inhibitors of the aspartyl protease BACE-1. J. Med. Chem. 2006, 49, 839-842.
  • 20
    • 0032811868 scopus 로고    scopus 로고
    • Rapid calculation of polar molecular surface area and its application to the prediction of transport phenomena. 2. Prediction of blood-brain barrier penetration
    • Clark, D. E. Rapid calculation of polar molecular surface area and its application to the prediction of transport phenomena. 2. Prediction of blood-brain barrier penetration. J. Pharm. Sci. 1999, 88, 815-821.
    • (1999) J. Pharm. Sci , vol.88 , pp. 815-821
    • Clark, D.E.1
  • 21
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski, C. A.; Lombardo, F.; Dominy, B. W.; Feeney, P. J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Delivery Rev. 2001, 46, 3-26.
    • (2001) Adv. Drug Delivery Rev , vol.46 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 23
    • 9744221865 scopus 로고    scopus 로고
    • Coburn, C. A.; Stachel, S. J.; Li, Y. M.; Rush, D. M.; Steele, T. G.; Chen-Dodson, E.; Holloway, M. K.; Xu, M.; Huang, Q.; Lai, M. T.; DiMuzio, J.; Crouthamel, M. C.; Shi, X. P.; Sardana, V.; Chen, Z.; Munshi, S.; Kuo, L.; Makara, G. M.; Annis, D. A.; Tadikonda, P. K.; Nash, H. M.; Vacca, J. P.; Wang, T. Identification of a small molecule nonpeptide active site beta-secretase inhibitor that displays a nontraditional binding mode for aspartyl proteases. J. Med. Chem. 2004, 47, 6117-6119.
    • Coburn, C. A.; Stachel, S. J.; Li, Y. M.; Rush, D. M.; Steele, T. G.; Chen-Dodson, E.; Holloway, M. K.; Xu, M.; Huang, Q.; Lai, M. T.; DiMuzio, J.; Crouthamel, M. C.; Shi, X. P.; Sardana, V.; Chen, Z.; Munshi, S.; Kuo, L.; Makara, G. M.; Annis, D. A.; Tadikonda, P. K.; Nash, H. M.; Vacca, J. P.; Wang, T. Identification of a small molecule nonpeptide active site beta-secretase inhibitor that displays a nontraditional binding mode for aspartyl proteases. J. Med. Chem. 2004, 47, 6117-6119.
  • 24
    • 33144455805 scopus 로고    scopus 로고
    • BACE-1 inhibitory activities of new substituted phenyl-piperazine coupled to various heterocycles: Chromene, coumarin and quinoline
    • Garino, C.; Pietrancosta, N.; Laras, Y.; Moret, V.; Rolland, A.; Quelever, G.; Kraus, J. L. BACE-1 inhibitory activities of new substituted phenyl-piperazine coupled to various heterocycles: chromene, coumarin and quinoline. Bioorg. Med. Chem. Lett. 2006, 16, 1995-1999.
    • (2006) Bioorg. Med. Chem. Lett , vol.16 , pp. 1995-1999
    • Garino, C.1    Pietrancosta, N.2    Laras, Y.3    Moret, V.4    Rolland, A.5    Quelever, G.6    Kraus, J.L.7
  • 26
    • 23444447457 scopus 로고    scopus 로고
    • Discovery of cell-permeable non-peptide inhibitors of beta-secretase by high-throughput docking and continuum electrostatics calculations
    • Huang, D.; Luthi, U.; Kolb, P.; Edler, K.; Cecchini, M.; Audetat, S.; Barberis, A.; Caflisch, A. Discovery of cell-permeable non-peptide inhibitors of beta-secretase by high-throughput docking and continuum electrostatics calculations. J. Med. Chem. 2005, 48, 5108-5111.
    • (2005) J. Med. Chem , vol.48 , pp. 5108-5111
    • Huang, D.1    Luthi, U.2    Kolb, P.3    Edler, K.4    Cecchini, M.5    Audetat, S.6    Barberis, A.7    Caflisch, A.8
  • 27
    • 4644364822 scopus 로고    scopus 로고
    • Apo and inhibitor complex structures of BACE (beta-secretase)
    • Patel, S.; Vuillard, L.; Cleasby, A.; Murray, C. W.; Yon, J. Apo and inhibitor complex structures of BACE (beta-secretase). J. Mol. Biol. 2004, 343, 407-416.
    • (2004) J. Mol. Biol , vol.343 , pp. 407-416
    • Patel, S.1    Vuillard, L.2    Cleasby, A.3    Murray, C.W.4    Yon, J.5
  • 28
    • 0034613320 scopus 로고    scopus 로고
    • Structure of the protease domain of memapsin 2 (beta-secretase) complexed with inhibitor
    • Hong, L.; Koelsch, G.; Lin, X.; Wu, S.; Terzyan, S.; Ghosh, A. K.; Zhang, X. C.; Tang, J. Structure of the protease domain of memapsin 2 (beta-secretase) complexed with inhibitor. Science 2000, 290, 150-153.
    • (2000) Science , vol.290 , pp. 150-153
    • Hong, L.1    Koelsch, G.2    Lin, X.3    Wu, S.4    Terzyan, S.5    Ghosh, A.K.6    Zhang, X.C.7    Tang, J.8
  • 29
    • 0036714840 scopus 로고    scopus 로고
    • Crystal structure of memapsin 2 (beta-secretase) in complex with an inhibitor OM00-3
    • Hong, L.; Turner, R. T., III; Koelsch, G.; Shin, D.; Ghosh, A. K.; Tang, J. Crystal structure of memapsin 2 (beta-secretase) in complex with an inhibitor OM00-3. Biochemistry 2002, 41, 10963-10967.
    • (2002) Biochemistry , vol.41 , pp. 10963-10967
    • Hong, L.1    Turner III, R.T.2    Koelsch, G.3    Shin, D.4    Ghosh, A.K.5    Tang, J.6
  • 30
    • 33947690921 scopus 로고    scopus 로고
    • 1 pockets.
    • 1 pockets.
  • 31
    • 33947622310 scopus 로고    scopus 로고
    • Although this compound reproducibly gave affinity in the 10 μM range n, 6, the data always exhibited a high Hill slope. This data should therefore be treated with some caution. 2006
    • Although this compound reproducibly gave affinity in the 10 μM range (n = 6), the data always exhibited a high Hill slope. This data should therefore be treated with some caution. 2006.
  • 35
    • 1942453243 scopus 로고    scopus 로고
    • Ligand efficiency: A useful metric for lead selection
    • Hopkins, A. L.; Groom, C. R.; Alex, A. Ligand efficiency: a useful metric for lead selection. Drug Discovery Today 2004, 9, 430-431.
    • (2004) Drug Discovery Today , vol.9 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2    Alex, A.3
  • 36
    • 33750132225 scopus 로고    scopus 로고
    • After the submission of this paper, Cole et al. described the use of acylguanidines as inhibitors of BACE-1. These compounds exploit the same binding motif described in this work. Cole, D. C.; Manas, E. S.; Stock, J. R.; Condon, J. S.; Jennings, L. D.; Aulabaugh, A.; Chopra, R.; Cowling, R.; Ellingboe, J. W.; Fan, K. Y.; Harrison, B. L.; Hu, Y.; Jacobsen, S.; Jin, G.; Lin, L.; Lovering, F. E.; Malamas, M. S.; Stahl, M. L.; Strand, J.; Sukhdeo, M. N.; Svenson, K.; Turner, M. J.; Wagner, E.; Wu, J.; Zhou, P.; Bard, J. Acylguanidines as small-molecule beta-secretase inhibitors. J. Med. Chem 2006, 49, 6158-6161.
    • After the submission of this paper, Cole et al. described the use of acylguanidines as inhibitors of BACE-1. These compounds exploit the same binding motif described in this work. Cole, D. C.; Manas, E. S.; Stock, J. R.; Condon, J. S.; Jennings, L. D.; Aulabaugh, A.; Chopra, R.; Cowling, R.; Ellingboe, J. W.; Fan, K. Y.; Harrison, B. L.; Hu, Y.; Jacobsen, S.; Jin, G.; Lin, L.; Lovering, F. E.; Malamas, M. S.; Stahl, M. L.; Strand, J.; Sukhdeo, M. N.; Svenson, K.; Turner, M. J.; Wagner, E.; Wu, J.; Zhou, P.; Bard, J. Acylguanidines as small-molecule beta-secretase inhibitors. J. Med. Chem 2006, 49, 6158-6161.
  • 37
    • 33947640756 scopus 로고    scopus 로고
    • There have also been two recent patent applications containing aminopyridines and their potential use as BACE-1 inhibitors, a Coburn, C. A, Holloway, M. K, Stachel, S. J. 2-aminopyridines compounds useful as beta-secretase inhibitors for the treatment of Alzheimer's disease. PCT Int. Appl. WO 2006060109, 2006
    • There have also been two recent patent applications containing aminopyridines and their potential use as BACE-1 inhibitors, (a) Coburn, C. A.; Holloway, M. K.; Stachel, S. J. 2-aminopyridines compounds useful as beta-secretase inhibitors for the treatment of Alzheimer's disease. PCT Int. Appl. WO 2006060109, 2006.
  • 38
    • 33947631595 scopus 로고    scopus 로고
    • Albert, J. S.; Callaghan, O.; Campbell, J.; Carr, R. A. E.; Chessari, G.; Cowan, S.; Congreve, M.S.; Edwards, P.; Frederickson, M.; Murray, C. W.; Patel, S. Substituted aminopyridines and uses thereof. PCT Int. Appl. WO2006065204, 2006.
    • (b) Albert, J. S.; Callaghan, O.; Campbell, J.; Carr, R. A. E.; Chessari, G.; Cowan, S.; Congreve, M.S.; Edwards, P.; Frederickson, M.; Murray, C. W.; Patel, S. Substituted aminopyridines and uses thereof. PCT Int. Appl. WO2006065204, 2006.
  • 40
    • 0028103275 scopus 로고    scopus 로고
    • Collaborative Computational Project, N. 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. 1994, D50, 760-763.
    • Collaborative Computational Project, N. 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. 1994, D50, 760-763.
  • 42
    • 0038820376 scopus 로고    scopus 로고
    • Hartshorn, M. J. AstexViewer: a visualisation aid for structure-based drug design. J. Comput.-Aided Mol. Des. 2002, 16, 871-881.
    • Hartshorn, M. J. AstexViewer: a visualisation aid for structure-based drug design. J. Comput.-Aided Mol. Des. 2002, 16, 871-881.
  • 43
    • 0035182073 scopus 로고    scopus 로고
    • Use of TLS parameters to model anisotropic displacements in macromolecular refinement
    • Winn, M. D.; Isupov, M. N.; Murshudov, G. N. Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr. D: Biol. Crystallogr. 2001, 57, 122-133.
    • (2001) Acta Crystallogr. D: Biol. Crystallogr , vol.57 , pp. 122-133
    • Winn, M.D.1    Isupov, M.N.2    Murshudov, G.N.3
  • 46
    • 0028812845 scopus 로고
    • Facile, regioselective syntheses of N-alkylated 2,3-diaminopyridines and imidazo[4,5-b]pyridines
    • Khanna, I. K.; Weier, R. M.; Lentz, K. T.; Swenton, L.; Lankin, D. C. Facile, regioselective syntheses of N-alkylated 2,3-diaminopyridines and imidazo[4,5-b]pyridines. J. Org. Chem 1995, 60, 960-965.
    • (1995) J. Org. Chem , vol.60 , pp. 960-965
    • Khanna, I.K.1    Weier, R.M.2    Lentz, K.T.3    Swenton, L.4    Lankin, D.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.