메뉴 건너뛰기




Volumn , Issue , 2016, Pages 1-327

Meta-analysis and combining information in genetics and genomics

Author keywords

[No Author keywords available]

Indexed keywords


EID: 85051808072     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Book
Times cited : (14)

References (566)
  • 1
    • 0036338150 scopus 로고    scopus 로고
    • Merlin - rapid analysis of dense genetic maps using sparse gene flow trees
    • Abecasis, G.R. et al., Merlin - rapid analysis of dense genetic maps using sparse gene flow trees, Nat. Genet., 30:97-101, 2002.
    • (2002) Nat. Genet. , vol.30 , pp. 97-101
    • Abecasis, G.R.1
  • 2
    • 0042629762 scopus 로고    scopus 로고
    • Towards identifying lateral gene transfer events
    • Altman, R.B. et al., eds., Proceedings of the Pacific Symposium on Biocomputing, River Edge, NJ: World Scientific
    • Addario-Berry, L., M.T. Hallett, and J. Lagergren, Towards identifying lateral gene transfer events, in Altman, R.B. et al., eds., Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02), Proceedings of the Pacific Symposium on Biocomputing, pp. 279-290, River Edge, NJ: World Scientific, 2002.
    • (2002) Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02) , pp. 279-290
    • Addario-Berry, L.1    Hallett, M.T.2    Lagergren, J.3
  • 4
    • 0032616683 scopus 로고    scopus 로고
    • Identification of genetic networks from a small number of gene expression patterns under the boolean network model
    • Altman, R., ed., River Edge, NJ:World Scientific
    • Akutsu, T., S. Miyano, and S. Kuhara, Identification of genetic networks from a small number of gene expression patterns under the boolean network model, in Altman, R., ed., Pacific Symposium on Biocomputing 1999, pp. 17-28, River Edge, NJ:World Scientific, 1999.
    • (1999) Pacific Symposium on Biocomputing 1999 , pp. 17-28
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 5
    • 0033737840 scopus 로고    scopus 로고
    • Inferring qualitative relations in genetic networks and metabolic pathways
    • Akutsu, T., S. Miyano, and S. Kuhara, Inferring qualitative relations in genetic networks and metabolic pathways, Bioinformatics, 16:727-734, 2000.
    • (2000) Bioinformatics , vol.16 , pp. 727-734
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 6
    • 1542399989 scopus 로고    scopus 로고
    • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    • Al-Shahrour, F., R. Diaz-Uriarte, and J. Dopazo, FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes, Bioinformatics, 20:578-580, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 578-580
    • Al-Shahrour, F.1    Diaz-Uriarte, R.2    Dopazo, J.3
  • 7
    • 0033924961 scopus 로고    scopus 로고
    • Testing the robustness of the new Haseman-Elston quantitativetrait loci-mapping procedure
    • Allison, D.B. et al., Testing the robustness of the new Haseman-Elston quantitativetrait loci-mapping procedure, Am. J. Hum. Genet., 67:249-252, 2000.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 249-252
    • Allison, D.B.1
  • 8
    • 0037187833 scopus 로고    scopus 로고
    • A mixture model approach for the analysis of microarray gene expression data
    • Allison, D.B. et al., A mixture model approach for the analysis of microarray gene expression data, Comput. Stat. Data An., 39:1-20, 2002.
    • (2002) Comput. Stat. Data An. , vol.39 , pp. 1-20
    • Allison, D.B.1
  • 9
    • 0031951973 scopus 로고    scopus 로고
    • Meta-analysis of linkage data under worst-case conditions:a demonstration using the human OB region
    • Allison, D.B. and M. Heo, Meta-analysis of linkage data under worst-case conditions:a demonstration using the human OB region, Genetics, 148:859-865, 1998.
    • (1998) Genetics , vol.148 , pp. 859-865
    • Allison, D.B.1    Heo, M.2
  • 10
    • 0031966959 scopus 로고    scopus 로고
    • Multipoint quantitative-trait linkage analysis in general pedigrees
    • Almasy, L. and J. Blangero, Multipoint quantitative-trait linkage analysis in general pedigrees, Am. J. Hum. Genet., 62:1198-1211, 1998.
    • (1998) Am. J. Hum. Genet. , vol.62 , pp. 1198-1211
    • Almasy, L.1    Blangero, J.2
  • 11
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genomewide expression data processing and modeling
    • Alter, O., P.O. Brown, and D. Botstein, Singular value decomposition for genomewide expression data processing and modeling, Proc. Natl. Acad. Sci. USA, 97:10101-10106, 2000.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 12
    • 0034758045 scopus 로고    scopus 로고
    • Genomewide scans of complex human diseases: True linkage is hard to find
    • Altmüller, J. et al., Genomewide scans of complex human diseases: True linkage is hard to find, Am. J. Hum. Genet., 69:936-950, 2001.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 936-950
    • Altmüller, J.1
  • 13
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S.F. et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25:3389-3402, 1997.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 14
    • 0028058128 scopus 로고
    • Robust variance-components approach for assessing genetic linkage in pedigrees
    • Amos, C.I., Robust variance-components approach for assessing genetic linkage in pedigrees, Am. J. Hum. Genet., 54:535-543, 1994.
    • (1994) Am. J. Hum. Genet. , vol.54 , pp. 535-543
    • Amos, C.I.1
  • 15
    • 38349032004 scopus 로고    scopus 로고
    • Successful design and conduct of genome-wide association studies
    • Amos, C.I., Successful design and conduct of genome-wide association studies, Hum. Mol. Genet., 16:R220-R225, 2007.
    • (2007) Hum. Mol. Genet. , vol.16 , pp. R220-R225
    • Amos, C.I.1
  • 16
    • 0035101150 scopus 로고    scopus 로고
    • Comparison of multivariate tests for genetic linkage
    • Amos, C.I., M. de Andrade, and D.K. Zhu, Comparison of multivariate tests for genetic linkage, Hum. Hered., 51:133-144, 2001.
    • (2001) Hum. Hered. , vol.51 , pp. 133-144
    • Amos, C.I.1    de Andrade, M.2    Zhu, D.K.3
  • 17
    • 0024328661 scopus 로고
    • Robust methods for the detection of genetic linkage for quantitative data from pedigrees
    • Amos, C.I. and R.C. Elston, Robust methods for the detection of genetic linkage for quantitative data from pedigrees, Genet. Epidemiol., 6:349-360, 1989.
    • (1989) Genet. Epidemiol. , vol.6 , pp. 349-360
    • Amos, C.I.1    Elston, R.C.2
  • 18
    • 0024314721 scopus 로고
    • A more powerful robust sib-pair test of linkage for quantitative traits
    • Amos, C.I. et al., A more powerful robust sib-pair test of linkage for quantitative traits, Genet. Epidemiol., 6:435-449, 1989.
    • (1989) Genet. Epidemiol. , vol.6 , pp. 435-449
    • Amos, C.I.1
  • 19
    • 20044368001 scopus 로고    scopus 로고
    • Genome-wide linkage scans for fasting glucose, insulin, and insulin resistance in the National Heart, Lung, and Blood Institute Family Blood Pressure Program: evidence of linkages to chromosome 7q36 and 19q13 from metaanalysis
    • An, P. et al., Genome-wide linkage scans for fasting glucose, insulin, and insulin resistance in the National Heart, Lung, and Blood Institute Family Blood Pressure Program: evidence of linkages to chromosome 7q36 and 19q13 from metaanalysis, Diabetes, 54:909-914, 2005.
    • (2005) Diabetes , vol.54 , pp. 909-914
    • An, P.1
  • 20
    • 0033618142 scopus 로고    scopus 로고
    • Testing for centre effects in multi-centre survival studies: A Monte Carlo comparison of fixed and random effects tests
    • Andersen, P.K., J.P. Klein, and M.J. Zhang, Testing for centre effects in multi-centre survival studies: A Monte Carlo comparison of fixed and random effects tests, Stat. Med., 18:1489-1500, 1999.
    • (1999) Stat. Med. , vol.18 , pp. 1489-1500
    • Andersen, P.K.1    Klein, J.P.2    Zhang, M.J.3
  • 21
    • 0000937686 scopus 로고
    • Tests for linear trends in proportions and frequencies
    • Armitage, P., Tests for linear trends in proportions and frequencies, Biometrics, 11:375-386, 1955.
    • (1955) Biometrics , vol.11 , pp. 375-386
    • Armitage, P.1
  • 22
    • 2342651581 scopus 로고    scopus 로고
    • Bayesian gene/species tree reconciliation and orthology analysis using MCMC
    • Arvestad, L. et al., Bayesian gene/species tree reconciliation and orthology analysis using MCMC, Bioinformatics, 19 Suppl 1:i7-i15, 2003.
    • (2003) Bioinformatics , vol.19 , pp. i7-i15
    • Arvestad, L.1
  • 23
    • 2442562450 scopus 로고    scopus 로고
    • Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution
    • Gusfield, D. et al., eds., New York: Association for Computing Machinery
    • Arvestad, L. et al., Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution, in Gusfield, D. et al., eds., RECOMB 2004: Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology, pp. 326-335, New York: Association for Computing Machinery, 2004.
    • (2004) RECOMB 2004: Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology , pp. 326-335
    • Arvestad, L.1
  • 24
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner, M. et al., Gene ontology: tool for the unification of biology. The Gene Ontology Consortium, Nat. Genet., 25:25-29, 2000.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 25
    • 0034887203 scopus 로고    scopus 로고
    • Creating the Gene Ontology resource: Design and implementation
    • Ashburner, M. et al., Creating the Gene Ontology resource: Design and implementation, Genome Res., 11:1425-1433, 2001.
    • (2001) Genome Res. , vol.11 , pp. 1425-1433
    • Ashburner, M.1
  • 26
    • 10744227357 scopus 로고    scopus 로고
    • Meta and pooled analysis of European coeliac disease data
    • Babron, M.C. et al., Meta and pooled analysis of European coeliac disease data, Eur. J. Hum. Genet., 11:828-834, 2003.
    • (2003) Eur. J. Hum. Genet. , vol.11 , pp. 828-834
    • Babron, M.C.1
  • 27
    • 0037245913 scopus 로고    scopus 로고
    • BIND: the Biomolecular Interaction Network Database
    • Bader, G.D., D. Betel, and C.W. Hogue, BIND: the Biomolecular Interaction Network Database, Nucleic Acids Res., 31:248-250, 2003.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.3
  • 28
    • 0036258079 scopus 로고    scopus 로고
    • Meta-analysis of whole-genome linkage scans of bipolar disorder and schizophrenia
    • Badner, J.A. and E.S. Gershon, Meta-analysis of whole-genome linkage scans of bipolar disorder and schizophrenia, Mol. Psychiatry, 7:405-411, 2002a.
    • (2002) Mol. Psychiatry , vol.7 , pp. 405-411
    • Badner, J.A.1    Gershon, E.S.2
  • 29
    • 0036150925 scopus 로고    scopus 로고
    • Regional meta-analysis of published data supports linkage of autism with markers on chromosome 7
    • Badner, J.A. and E.S. Gershon, Regional meta-analysis of published data supports linkage of autism with markers on chromosome 7, Mol. Psychiatry, 7:56-66, 2002b.
    • (2002) Mol. Psychiatry , vol.7 , pp. 56-66
    • Badner, J.A.1    Gershon, E.S.2
  • 30
    • 0023181949 scopus 로고
    • Inter-study differences: how should they influence the interpretation and analysis of results?
    • Bailey, K.R., Inter-study differences: how should they influence the interpretation and analysis of results?, Stat. Med., 6:351-358, 1987.
    • (1987) Stat. Med. , vol.6 , pp. 351-358
    • Bailey, K.R.1
  • 31
    • 12344316947 scopus 로고    scopus 로고
    • A graph-theoretic approach to testing associations between disparate sources of functional genomics data
    • Balasubramanian, R. et al., A graph-theoretic approach to testing associations between disparate sources of functional genomics data, Bioinformatics, 20:3353-3362, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 3353-3362
    • Balasubramanian, R.1
  • 32
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes
    • Baldi, P. and A.D. Long, A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes, Bioinformatics, 17:509-519, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 33
    • 10744226222 scopus 로고    scopus 로고
    • Computational discovery of gene modules and regulatory networks
    • Bar-Joseph, Z. et al., Computational discovery of gene modules and regulatory networks, Nat. Biotechnol., 21:1337-1342, 2003.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 1337-1342
    • Bar-Joseph, Z.1
  • 34
    • 13444304325 scopus 로고    scopus 로고
    • NCBI GEO: mining millions of expression profiles-database and tools
    • Barrett, T. et al., NCBI GEO: mining millions of expression profiles-database and tools, Nucleic Acids Res., 33:D562-D566, 2005.
    • (2005) Nucleic Acids Res. , vol.33 , pp. D562-D566
    • Barrett, T.1
  • 35
    • 24744440514 scopus 로고    scopus 로고
    • Empirical Bayes method for incorporating data from multiple genome scans
    • Beasley, T.M. et al., Empirical Bayes method for incorporating data from multiple genome scans, Hum. Hered., 60:36-42, 2005.
    • (2005) Hum. Hered. , vol.60 , pp. 36-42
    • Beasley, T.M.1
  • 36
    • 18544365698 scopus 로고    scopus 로고
    • Gene-expression profiles predict survival of patients with lung adenocarcinoma
    • Beer, D.G. et al., Gene-expression profiles predict survival of patients with lung adenocarcinoma, Nat. Med., 9:816-824, 2002.
    • (2002) Nat. Med. , vol.9 , pp. 816-824
    • Beer, D.G.1
  • 37
    • 33645568886 scopus 로고    scopus 로고
    • Phylogenetic identification of lateral genetic transfer events
    • Beiko, R. and N. Hamilton, Phylogenetic identification of lateral genetic transfer events, BMC Evol. Biol., 6:15, 2006.
    • (2006) BMC Evol. Biol. , vol.6 , pp. 15
    • Beiko, R.1    Hamilton, N.2
  • 38
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth, T. and T.P. Speed, GOstat: find statistically overrepresented Gene Ontologies within a group of genes, Bioinformatics, 20:1464-14655, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1464-14655
    • Beissbarth, T.1    Speed, T.P.2
  • 39
    • 0347090327 scopus 로고    scopus 로고
    • Adjustment of systematic microarray data biases
    • Benito, M. et al., Adjustment of systematic microarray data biases, Bioinformatics, 20:105-114, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 105-114
    • Benito, M.1
  • 40
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. and Y. Hochberg, Controlling the false discovery rate: A practical and powerful approach to multiple testing, J. Roy. Stat. Soc. B, 57:289-300, 1995.
    • (1995) J. Roy. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 41
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y. and D. Yekutieli, The control of the false discovery rate in multiple testing under dependency, Ann. Stat., 29:1165-1188, 2001.
    • (2001) Ann. Stat. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 42
    • 84919436881 scopus 로고
    • Multiparameter hypothesis testing and acceptance sampling
    • Berger, R.L., Multiparameter hypothesis testing and acceptance sampling, Technometrics, 24:295-300, 1982.
    • (1982) Technometrics , vol.24 , pp. 295-300
    • Berger, R.L.1
  • 43
    • 0043005476 scopus 로고    scopus 로고
    • Bioequivalence trials, intersection-union tests, and equivalence confidence sets
    • Berger, R.L., Bioequivalence trials, intersection-union tests, and equivalence confidence sets, Stat. Sci., 11:283-319, 1996.
    • (1996) Stat. Sci. , vol.11 , pp. 283-319
    • Berger, R.L.1
  • 44
    • 0037819441 scopus 로고    scopus 로고
    • Widespread horizontal transfer of mitochondrial genes in flowering plants
    • Bergthorsson, U. et al., Widespread horizontal transfer of mitochondrial genes in flowering plants, Nature, 424:197-201, 2003.
    • (2003) Nature , vol.424 , pp. 197-201
    • Bergthorsson, U.1
  • 45
    • 11144228905 scopus 로고    scopus 로고
    • Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella
    • Bergthorsson, U. et al., Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella, Proc. Natl. Acad. Sci. USA, 101:17747-17752, 2004.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 17747-17752
    • Bergthorsson, U.1
  • 47
    • 0035923521 scopus 로고    scopus 로고
    • Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
    • Bhattacharjee, A. et al., Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses, Proc. Natl. Acad. Sci. USA, 98:13790-13795, 2001.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 13790-13795
    • Bhattacharjee, A.1
  • 48
    • 84947406243 scopus 로고
    • Combining independent tests of significance
    • Birnbaum, A., Combining independent tests of significance, J. Am. Stat. Assoc., 49:559-574, 1954.
    • (1954) J. Am. Stat. Assoc. , vol.49 , pp. 559-574
    • Birnbaum, A.1
  • 49
    • 12244296117 scopus 로고    scopus 로고
    • Results of a high-resolution genome screen of 437 Alzheimer's disease families
    • Blacker, D. et al., Results of a high-resolution genome screen of 437 Alzheimer's disease families, Hum. Mol. Genet., 12:23-32, 2003.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 23-32
    • Blacker, D.1
  • 51
    • 0344936575 scopus 로고    scopus 로고
    • Recent developments in computerassisted analysis of mixtures
    • Böhning, D., E. Dietz, and P. Schlattmann, Recent developments in computerassisted analysis of mixtures, Biometrics, 54:525-536, 1998.
    • (1998) Biometrics , vol.54 , pp. 525-536
    • Böhning, D.1    Dietz, E.2    Schlattmann, P.3
  • 53
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on bias and variance
    • Bolstad, B.M. et al., A comparison of normalization methods for high density oligonucleotide array data based on bias and variance, Bioinformatics, 19:185-193, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1
  • 54
    • 0026602033 scopus 로고
    • An application of empirical Bayes methods to updating linkage information on chromosome 21
    • Bonney, G.E. et al., An application of empirical Bayes methods to updating linkage information on chromosome 21, Cytogenet. Cell Genet., 59:112-113, 1992.
    • (1992) Cytogenet. Cell Genet. , vol.59 , pp. 112-113
    • Bonney, G.E.1
  • 55
    • 50649121884 scopus 로고    scopus 로고
    • MAID: An effect size based model for microarray data integration across laboratories and platforms
    • Borozan, I. et al., MAID: An effect size based model for microarray data integration across laboratories and platforms, BMC Bioinformatics, 9:305, 2008.
    • (2008) BMC Bioinformatics , vol.9 , pp. 305
    • Borozan, I.1
  • 56
    • 0019302053 scopus 로고
    • Construction of a genetic map in man using restriction fragment length polymorphisms
    • Botstein, D. et al., Construction of a genetic map in man using restriction fragment length polymorphisms, Am. J. Hum. Genet., 32:314-331, 1980.
    • (1980) Am. J. Hum. Genet. , vol.32 , pp. 314-331
    • Botstein, D.1
  • 58
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME) - toward standards for microarray data
    • Brazma, A. et al., Minimum information about a microarray experiment (MIAME) - toward standards for microarray data, Nat. Genet., 29:373, 2001.
    • (2001) Nat. Genet. , vol.29 , pp. 373
    • Brazma, A.1
  • 59
    • 0037264524 scopus 로고    scopus 로고
    • The GRID: The General Repository for Interaction Datasets
    • Breitkreutz, B.J., C. Stark, and M. Tyers, The GRID: The General Repository for Interaction Datasets, Genome Biol., 4:R23, 2003.
    • (2003) Genome Biol. , vol.4 , pp. R23
    • Breitkreutz, B.J.1    Stark, C.2    Tyers, M.3
  • 60
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling, R. et al., Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments, FEBS Lett., 573:83-92, 2004.
    • (2004) FEBS Lett. , vol.573 , pp. 83-92
    • Breitling, R.1
  • 61
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem, R.B. et al., Genetic dissection of transcriptional regulation in budding yeast, Science, 296:752-755, 2002.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1
  • 62
    • 0034130561 scopus 로고    scopus 로고
    • Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
    • Brenner, S. et al., Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays, Nat. Biotechnol., 18:630-634, 2000.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 630-634
    • Brenner, S.1
  • 63
    • 55149116287 scopus 로고    scopus 로고
    • Quality assessment for short oligonucleotide microarray data
    • Brettschneider, J. et al., Quality assessment for short oligonucleotide microarray data, Technometrics, 50:241-264, 2008.
    • (2008) Technometrics , vol.50 , pp. 241-264
    • Brettschneider, J.1
  • 64
    • 15044344834 scopus 로고    scopus 로고
    • Mapping expression in randomized rodent genomes
    • Broman, K.W., Mapping expression in randomized rodent genomes, Nat. Genet., 37:209-210, 2005.
    • (2005) Nat. Genet. , vol.37 , pp. 209-210
    • Broman, K.W.1
  • 65
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
    • Brüssow, H., C. Canchaya, and W.D. Hardt, Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion, Microbiol. Mol. Biol. Rev., 68:560-602, 2004.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 560-602
    • Brüssow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 66
    • 0035933114 scopus 로고    scopus 로고
    • Westpheling, Generalized transduction in Streptomyces coelicolor
    • Burke, J., D. Schneider, and J. Westpheling, Generalized transduction in Streptomyces coelicolor, Proc. Natl. Acad. Sci. USA, 98:6289-6294, 2001.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 6289-6294
    • Burke, J.1    Schneider, D.2    Westpheling, J.3
  • 67
    • 34548159455 scopus 로고    scopus 로고
    • Functional genomic analysis reveals cross-talk between peroxisome proliferator-activated receptor gamma and calcium signaling in human colorectal cancer cells
    • Bush, C.R. et al., Functional genomic analysis reveals cross-talk between peroxisome proliferator-activated receptor gamma and calcium signaling in human colorectal cancer cells, J. Biol. Chem., 282:23387-23401, 2007.
    • (2007) J. Biol. Chem. , vol.282 , pp. 23387-23401
    • Bush, C.R.1
  • 68
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • Bussemaker, H.J., H. Li, and E.D. Siggia, Regulatory element detection using correlation with expression, Nat. Genet., 27:167-171, 2001.
    • (2001) Nat. Genet. , vol.27 , pp. 167-171
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 69
    • 20144383240 scopus 로고    scopus 로고
    • Uncovering regulatory pathways that affect hematopoietic stem cell function using "genetical genomics"
    • Bystrykh, L. et al., Uncovering regulatory pathways that affect hematopoietic stem cell function using "genetical genomics", Nat. Genet., 37:225-232, 2005.
    • (2005) Nat. Genet. , vol.37 , pp. 225-232
    • Bystrykh, L.1
  • 70
    • 0037442092 scopus 로고    scopus 로고
    • Population stratification and spurious allelic association
    • Cardon, L.R. and L.J. Palmer, Population stratification and spurious allelic association, Lancet, 361:598-604, 2003.
    • (2003) Lancet , vol.361 , pp. 598-604
    • Cardon, L.R.1    Palmer, L.J.2
  • 73
    • 0442277964 scopus 로고    scopus 로고
    • Empirical Bayes: Past and present and future
    • Carlin, B.P. and T.A. Louis, Empirical Bayes: Past and present and future, J. Am. Stat. Assoc., 95:1286-1289, 2000b.
    • (2000) J. Am. Stat. Assoc. , vol.95 , pp. 1286-1289
    • Carlin, B.P.1    Louis, T.A.2
  • 74
    • 0037101838 scopus 로고    scopus 로고
    • Increased huntingtin protein length reduces the number of polyglutamine-induced gene expression changes in mouse models of Huntington's disease
    • Chan, E.Y. et al., Increased huntingtin protein length reduces the number of polyglutamine-induced gene expression changes in mouse models of Huntington's disease, Hum. Mol. Genet., 11:1939-1951, 2002.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 1939-1951
    • Chan, E.Y.1
  • 75
    • 0031811061 scopus 로고    scopus 로고
    • Jungles: a new solution to the host/parasite phylogeny reconciliation problem
    • Charleston, M.A., Jungles: a new solution to the host/parasite phylogeny reconciliation problem, Math. Biosci., 149:191-223, 1998.
    • (1998) Math. Biosci. , vol.149 , pp. 191-223
    • Charleston, M.A.1
  • 76
    • 0035130163 scopus 로고    scopus 로고
    • Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
    • Chen, F.C. and W.H. Li, Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees, Am. J. Hum. Genet., 68:444-456, 2001.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 444-456
    • Chen, F.C.1    Li, W.H.2
  • 77
    • 0035648075 scopus 로고    scopus 로고
    • A modified likelihood ratio test for homogeneity in finite mixture models
    • Chen, H., J. Chen, and J. Kalbfleisch, A modified likelihood ratio test for homogeneity in finite mixture models, J. Roy. Stat. Soc. B, 63:19-29, 2001.
    • (2001) J. Roy. Stat. Soc. B , vol.63 , pp. 19-29
    • Chen, H.1    Chen, J.2    Kalbfleisch, J.3
  • 78
    • 0033692378 scopus 로고    scopus 로고
    • NOTUNG: A program for dating gene duplications and optimizing gene family trees
    • Chen, K., D. Durand, and M. Farach-Colton, NOTUNG: A program for dating gene duplications and optimizing gene family trees, J. Comput. Biol., 7:429-447, 2000.
    • (2000) J. Comput. Biol. , vol.7 , pp. 429-447
    • Chen, K.1    Durand, D.2    Farach-Colton, M.3
  • 79
    • 20144386111 scopus 로고    scopus 로고
    • Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function
    • Chesler, E.J. et al., Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function, Nat. Genet., 37:233-242, 2005.
    • (2005) Nat. Genet. , vol.37 , pp. 233-242
    • Chesler, E.J.1
  • 80
    • 0037370311 scopus 로고    scopus 로고
    • Natural variation in human gene expression assessed in lymphoblastoid cells
    • Cheung, V.G. et al., Natural variation in human gene expression assessed in lymphoblastoid cells, Nat. Genet., 33:422-425, 2003.
    • (2003) Nat. Genet. , vol.33 , pp. 422-425
    • Cheung, V.G.1
  • 81
    • 0141919767 scopus 로고    scopus 로고
    • Meta-analysis of 4 coronary heart disease genomewide linkage studies confirms a susceptibility locus on chromosome 3q
    • Chiodini, B.D. and C.M. Lewis, Meta-analysis of 4 coronary heart disease genomewide linkage studies confirms a susceptibility locus on chromosome 3q, Arterioscler. Thromb. Vasc. Biol., 23:1863-1868, 2003.
    • (2003) Arterioscler. Thromb. Vasc. Biol. , vol.23 , pp. 1863-1868
    • Chiodini, B.D.1    Lewis, C.M.2
  • 82
    • 0002426629 scopus 로고    scopus 로고
    • The Chipping Forecast
    • Chipping Forecast, The Chipping Forecast, Nat. Genet., 21:Special Supplement, 1999, Special Supplement.
    • (1999) Nat. Genet. , vol.21
    • Forecast, C.1
  • 83
    • 0038762556 scopus 로고    scopus 로고
    • The Chipping Forecast II
    • Chipping Forecast, The Chipping Forecast II, Nat. Genet., 32:Special Supplement, 2002.
    • (2002) Nat. Genet. , vol.32
    • Forecast, C.1
  • 84
    • 4544318151 scopus 로고    scopus 로고
    • Bayesian hierarchical error model for analysis of gene expression data
    • Cho, H. and J.K. Lee, Bayesian hierarchical error model for analysis of gene expression data, Bioinformatics, 20:2016-2025, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 2016-2025
    • Cho, H.1    Lee, J.K.2
  • 85
    • 41149092139 scopus 로고    scopus 로고
    • Error-pooling empirical Bayes model for enhanced statistical discovery of differential expression in microarray data
    • Cho, H. and J.K. Lee, Error-pooling empirical Bayes model for enhanced statistical discovery of differential expression in microarray data, IEEE Trans. Syst. Man Cybern. A, Syst. Humans, 38:425-436, 2008.
    • (2008) IEEE Trans. Syst. Man Cybern. A, Syst. Humans , vol.38 , pp. 425-436
    • Cho, H.1    Lee, J.K.2
  • 86
    • 4944232237 scopus 로고    scopus 로고
    • Combining multiple microarray studies and modeling interstudy variation
    • Choi, J.K. et al., Combining multiple microarray studies and modeling interstudy variation, Bioinformatics, 19 Suppl 1:i84-i90, 2003.
    • (2003) Bioinformatics , vol.19 , pp. i84-i90
    • Choi, J.K.1
  • 88
    • 0032561246 scopus 로고    scopus 로고
    • The transcriptional program of sporulation in budding yeast
    • Chu, S. et al., The transcriptional program of sporulation in budding yeast, Science, 282:699-705, 1998.
    • (1998) Science , vol.282 , pp. 699-705
    • Chu, S.1
  • 89
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill, G.A. and R.W. Doerge, Empirical threshold values for quantitative trait mapping, Genetics, 138:963-971, 1994.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 90
    • 0036169141 scopus 로고    scopus 로고
    • Machine learning of functional class from phenotype data
    • Clare, A. and R.D. King, Machine learning of functional class from phenotype data, Bioinformatics, 18:160-166, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 160-166
    • Clare, A.1    King, R.D.2
  • 91
    • 27644546712 scopus 로고    scopus 로고
    • Population structure, differential bias and genomic control in a large-scale, case-control association study
    • Clayton, D.G. et al., Population structure, differential bias and genomic control in a large-scale, case-control association study, Nat. Genet., 37:1243-1246, 2005.
    • (2005) Nat. Genet. , vol.37 , pp. 1243-1246
    • Clayton, D.G.1
  • 92
    • 41049093347 scopus 로고
    • The combination of estimates from different experiments
    • Cochran, W.G., The combination of estimates from different experiments, Biometrics, 10:101-129, 1954a.
    • (1954) Biometrics , vol.10 , pp. 101-129
    • Cochran, W.G.1
  • 93
    • 0000642942 scopus 로고
    • Some methods of strengthening the common χ2 tests
    • Cochran, W.G., Some methods of strengthening the common χ2 tests, Biometrics, 10:417-451, 1954b.
    • (1954) Biometrics , vol.10 , pp. 417-451
    • Cochran, W.G.1
  • 94
    • 12044257390 scopus 로고
    • How the power of MANOVA can both increase and decrease as a function of the intercorrelations among the dependent variables
    • Cole, D.A. et al., How the power of MANOVA can both increase and decrease as a function of the intercorrelations among the dependent variables, Psychol. Bull., 115:465-474, 1994.
    • (1994) Psychol. Bull. , vol.115 , pp. 465-474
    • Cole, D.A.1
  • 95
    • 0015864927 scopus 로고
    • The influence of genetic background on the expression of the obese (ob) gene in the mouse
    • Coleman, D.L. and K.P. Hummel, The influence of genetic background on the expression of the obese (ob) gene in the mouse, Diabetologia, 9:287-293, 1973.
    • (1973) Diabetologia , vol.9 , pp. 287-293
    • Coleman, D.L.1    Hummel, K.P.2
  • 96
    • 0038449114 scopus 로고    scopus 로고
    • Genetic loci for diet-induced atherosclerotic lesions and plasma lipids in mice
    • Colinayo, V.V. et al., Genetic loci for diet-induced atherosclerotic lesions and plasma lipids in mice, Mamm. Genome, 14:464-471, 2003.
    • (2003) Mamm. Genome , vol.14 , pp. 464-471
    • Colinayo, V.V.1
  • 98
    • 0037453009 scopus 로고    scopus 로고
    • Integrating regulatory motif discovery and genome-wide expression analysis
    • Conlon, E.M. et al., Integrating regulatory motif discovery and genome-wide expression analysis, Proc. Natl. Acad. Sci. USA, 100:3339-3344, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 3339-3344
    • Conlon, E.M.1
  • 100
    • 0000976601 scopus 로고    scopus 로고
    • Meta-analysis, funnel plots and sensitivity analysis
    • Copas, J. and J.Q. Shi, Meta-analysis, funnel plots and sensitivity analysis, Biostatistics, 1:247-262, 2000.
    • (2000) Biostatistics , vol.1 , pp. 247-262
    • Copas, J.1    Shi, J.Q.2
  • 101
    • 1342330572 scopus 로고    scopus 로고
    • A benchmark for Affymetrix GeneChip expression measures
    • Cope, L.M. et al., A benchmark for Affymetrix GeneChip expression measures, Bioinformatics, 20:323-331, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 323-331
    • Cope, L.M.1
  • 102
    • 0035208755 scopus 로고    scopus 로고
    • Sample size requirements to control for stochastic variation in magnitude and location of allele-sharing linkage statistics in affected sibling pairs
    • Cordell, H.J., Sample size requirements to control for stochastic variation in magnitude and location of allele-sharing linkage statistics in affected sibling pairs, Ann. Hum. Genet., 65:491-502, 2001.
    • (2001) Ann. Hum. Genet. , vol.65 , pp. 491-502
    • Cordell, H.J.1
  • 103
    • 85051792764 scopus 로고    scopus 로고
    • An expression of interest
    • Cox, N.J., An expression of interest, Nature, 12:733-734, 2004.
    • (2004) Nature , vol.12 , pp. 733-734
    • Cox, N.J.1
  • 104
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • Cui, X. and G.A. Churchill, Statistical tests for differential expression in cDNA microarray experiments, Genome Biol., 4:210, 2003.
    • (2003) Genome Biol. , vol.4 , pp. 210
    • Cui, X.1    Churchill, G.A.2
  • 105
    • 24144445705 scopus 로고    scopus 로고
    • Improved statistical tests for differential gene expression by shrinking variance components estimates
    • Cui, X. et al., Improved statistical tests for differential gene expression by shrinking variance components estimates, Biostatistics, 6:59-75, 2005.
    • (2005) Biostatistics , vol.6 , pp. 59-75
    • Cui, X.1
  • 107
    • 0036500609 scopus 로고    scopus 로고
    • A genomic regulatory network for development
    • Davidson, E.H. et al., A genomic regulatory network for development, Science, 295:1669-1678, 2002.
    • (2002) Science , vol.295 , pp. 1669-1678
    • Davidson, E.H.1
  • 108
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: a literature review
    • de Jong, H., Modeling and simulation of genetic regulatory systems: a literature review, J. Comput. Biol., 9:67-103, 2002.
    • (2002) J. Comput. Biol. , vol.9 , pp. 67-103
    • de Jong, H.1
  • 109
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high-throughput observation
    • Deane, C.M. et al., Protein interactions: Two methods for assessment of the reliability of high-throughput observation, Mol. Cell. Proteomics, 1:349-356, 2002.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 349-356
    • Deane, C.M.1
  • 110
    • 33646928341 scopus 로고    scopus 로고
    • Discordance of species trees with their most likely gene trees
    • Degnan, J.H. and N.A. Rosenberg, Discordance of species trees with their most likely gene trees, PLoS Genet., 2:e68, 2006.
    • (2006) PLoS Genet. , vol.2 , pp. e68
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 111
    • 10744230909 scopus 로고    scopus 로고
    • A meta-analysis of four European genome screens (GIFT consortium) shows evidence for a novel region on chromosome 17p11.2-q22 linked to type 2 diabetes
    • Demenais, F. et al., A meta-analysis of four European genome screens (GIFT consortium) shows evidence for a novel region on chromosome 17p11.2-q22 linked to type 2 diabetes, Hum. Mol. Genet., 12:1865-1873, 2003.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 1865-1873
    • Demenais, F.1
  • 112
    • 1242342709 scopus 로고    scopus 로고
    • Meta-analysis of linkage studies for complex diseases:An overview of methods and a simulation study
    • Dempfle, A. and S. Loesgen, Meta-analysis of linkage studies for complex diseases:An overview of methods and a simulation study, Ann. Hum. Genet., 68:69-83, 2004.
    • (2004) Ann. Hum. Genet. , vol.68 , pp. 69-83
    • Dempfle, A.1    Loesgen, S.2
  • 113
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm (with discussion)
    • Dempster, A.P., N.M. Laird, and D.B. Rubin, Maximum likelihood from incomplete data via the EM algorithm (with discussion), J. Roy. Stat. Soc. B, 39:1-38, 1977.
    • (1977) J. Roy. Stat. Soc. B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 114
    • 3142622851 scopus 로고    scopus 로고
    • An integrated probabilistic model for functional prediction of proteins
    • Deng, M.H., T. Chen, and F.Z. Sun, An integrated probabilistic model for functional prediction of proteins, J. Comput. Biol., 11:463-475, 2004a.
    • (2004) J. Comput. Biol. , vol.11 , pp. 463-475
    • Deng, M.H.1    Chen, T.2    Sun, F.Z.3
  • 115
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • Altman, R.B. et al., eds., River Edge, NJ:World Scientific
    • Deng, M.H., F.Z. Sun, and T. Chen, Assessment of the reliability of protein-protein interactions and protein function prediction, in Altman, R.B. et al., eds., Biocomputing 2003: Proceedings of the Pacific Symposium, pp. 140-151, River Edge, NJ:World Scientific, 2003.
    • (2003) Biocomputing 2003: Proceedings of the Pacific Symposium , pp. 140-151
    • Deng, M.H.1    Sun, F.Z.2    Chen, T.3
  • 116
    • 2342435295 scopus 로고    scopus 로고
    • Mapping gene ontology to proteins based on protein-protein interaction data
    • Deng, M.H. et al., Mapping gene ontology to proteins based on protein-protein interaction data, Bioinformatics, 20:895-902, 2004b.
    • (2004) Bioinformatics , vol.20 , pp. 895-902
    • Deng, M.H.1
  • 117
    • 18244386985 scopus 로고    scopus 로고
    • Prediction of protein function using protein-protein interaction data
    • Los Alamitos, CA: IEEE Computer Society Press
    • Deng, M.H. et al., Prediction of protein function using protein-protein interaction data, in Proceedings of the First IEEE Computer Society Bioinformatics Conference (CSB2002), pp. 197-206, Los Alamitos, CA: IEEE Computer Society Press, 2002.
    • (2002) Proceedings of the First IEEE Computer Society Bioinformatics Conference (CSB2002) , pp. 197-206
    • Deng, M.H.1
  • 118
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for annotation, visualization, and integrated discovery
    • Dennis, G.J. et al., DAVID: Database for annotation, visualization, and integrated discovery, Genome Biol., 4:P3, 2003.
    • (2003) Genome Biol. , vol.4 , pp. P3
    • Dennis, G.J.1
  • 119
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J.L., V.R. Iyer, and P.O. Brown, Exploring the metabolic and genetic control of gene expression on a genomic scale, Science, 278:680-685, 1997.
    • (1997) Science , vol.278 , pp. 680-685
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 121
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B. and K. Roeder, Genomic control for association studies, Biometrics, 55:997-1004, 1999.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 122
    • 0037251963 scopus 로고    scopus 로고
    • SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
    • Diehn, M. et al., SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data, Nucleic Acids Res., 31:219-223, 2003.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 219-223
    • Diehn, M.1
  • 123
    • 19944429996 scopus 로고    scopus 로고
    • Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays
    • Dobbin, K.K. et al., Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays, Clin. Cancer Res., 11:565-572, 2005.
    • (2005) Clin. Cancer Res. , vol.11 , pp. 565-572
    • Dobbin, K.K.1
  • 125
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle, W.F., Phylogenetic classification and the universal tree, Science, 284:2124-2129, 1999b.
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 126
    • 0042121055 scopus 로고    scopus 로고
    • Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate
    • Draghici, S. et al., Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate, Nucleic Acids Res., 31:3775-3781, 2003.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3775-3781
    • Draghici, S.1
  • 127
    • 0034714135 scopus 로고    scopus 로고
    • A Bayesian system integrating expression data with squence patterns for localizing proteins: Comprehensive application to the yeast genome
    • Drawid, A. and M. Gerstein, A Bayesian system integrating expression data with squence patterns for localizing proteins: Comprehensive application to the yeast genome, J. Mol. Biol., 301:1059-1075, 2000.
    • (2000) J. Mol. Biol. , vol.301 , pp. 1059-1075
    • Drawid, A.1    Gerstein, M.2
  • 128
    • 0032231653 scopus 로고    scopus 로고
    • How sib pairs reveal linkage
    • Drigalenko, E., How sib pairs reveal linkage, Am. J. Hum. Genet., 63:1242-1245, 1998.
    • (1998) Am. J. Hum. Genet. , vol.63 , pp. 1242-1245
    • Drigalenko, E.1
  • 129
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • Dudoit, S., J.P. Shaffer, and J.C. Boldrick, Multiple hypothesis testing in microarray experiments, Stat. Sci., 18:71-103, 2003.
    • (2003) Stat. Sci. , vol.18 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.P.2    Boldrick, J.C.3
  • 130
    • 0003352227 scopus 로고    scopus 로고
    • Triangle constraints for sib-pair identity by descent probabilities under a general multilocus model for disease susceptibility
    • Halloran, M.E. and S. Geisser, eds., New York: Springer-Verlag
    • Dudoit, S. and T.P. Speed, Triangle constraints for sib-pair identity by descent probabilities under a general multilocus model for disease susceptibility, in Halloran, M.E. and S. Geisser, eds., Statistics in Genetics, vol. 112 of IMA Volumes in Mathematics and its Applications, pp. 181-221, New York: Springer-Verlag, 1999.
    • (1999) Statistics in Genetics, vol. 112 of IMA Volumes in Mathematics and its Applications , pp. 181-221
    • Dudoit, S.1    Speed, T.P.2
  • 131
    • 14044252027 scopus 로고    scopus 로고
    • Multiple testing, Part I. Single-step procedures for control of general Type I error rates
    • Dudoit, S., M.J. van der Laan, and K.S. Pollard, Multiple testing, Part I. Single-step procedures for control of general Type I error rates, Stat. Appl. Genet. Mol. Biol., 3:Article 13, 2004.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Dudoit, S.1    van der Laan, M.J.2    Pollard, K.S.3
  • 132
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit, S. et al., Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments, Stat. Sinica, 12:111-139, 2002.
    • (2002) Stat. Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1
  • 133
    • 0032944437 scopus 로고    scopus 로고
    • Statistical methods for mapping quantitative trait loci from a dense set of markers
    • Dupuis, J. and D. Siegmund, Statistical methods for mapping quantitative trait loci from a dense set of markers, Genetics, 151:373-386, 1999.
    • (1999) Genetics , vol.151 , pp. 373-386
    • Dupuis, J.1    Siegmund, D.2
  • 135
    • 0012572299 scopus 로고    scopus 로고
    • A variance-stabilizing transformation for gene-expression microarray data
    • Durbin, B. et al., A variance-stabilizing transformation for gene-expression microarray data, Bioinformatics, 18 Suppl 1:S105-S110, 2002.
    • (2002) Bioinformatics , vol.18 , pp. S105-S110
    • Durbin, B.1
  • 136
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar, R., M. Domrachev, and A.E. Lash, Gene Expression Omnibus: NCBI gene expression and hybridization array data repository, Nucleic Acids Res., 30:207-210, 2002.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 137
    • 34347256397 scopus 로고    scopus 로고
    • High-resolution species trees without concatenation
    • Edwards, S.V., L. Liu, and D.K. Pearl, High-resolution species trees without concatenation, Proc. Natl. Acad. Sci. USA, 104:5936-5941, 2007.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 5936-5941
    • Edwards, S.V.1    Liu, L.2    Pearl, D.K.3
  • 138
    • 84949161149 scopus 로고
    • Stein's estimator and its competitors - an empirical Bayes approach
    • Efron, B. and C. Morris, Stein's estimator and its competitors - an empirical Bayes approach, J. Am. Stat. Assoc., 68:117-130, 1973.
    • (1973) J. Am. Stat. Assoc. , vol.68 , pp. 117-130
    • Efron, B.1    Morris, C.2
  • 139
    • 84949161141 scopus 로고
    • Data analysis using Stein's estimator and its generalizations
    • Efron, B. and C. Morris, Data analysis using Stein's estimator and its generalizations, J. Am. Stat. Assoc., 70:379-421, 1975.
    • (1975) J. Am. Stat. Assoc. , vol.70 , pp. 379-421
    • Efron, B.1    Morris, C.2
  • 140
    • 1542784653 scopus 로고    scopus 로고
    • Empirical Bayes analysis of a microarray experiment
    • Efron, B. et al., Empirical Bayes analysis of a microarray experiment, J. Am. Stat. Assoc., 96:1151-1160, 2001.
    • (2001) J. Am. Stat. Assoc. , vol.96 , pp. 1151-1160
    • Efron, B.1
  • 141
    • 0032477417 scopus 로고    scopus 로고
    • Bias in location and selection of studies
    • Egger, M. and G.D. Smith, Bias in location and selection of studies, BMJ, 316:61-66, 1998.
    • (1998) BMJ , vol.316 , pp. 61-66
    • Egger, M.1    Smith, G.D.2
  • 142
    • 0030922816 scopus 로고    scopus 로고
    • Bias in meta-analysis detected by a simple, graphical test
    • Egger, M. et al., Bias in meta-analysis detected by a simple, graphical test, BMJ, 315:629-634, 1997.
    • (1997) BMJ , vol.315 , pp. 629-634
    • Egger, M.1
  • 143
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen, M.B. et al., Cluster analysis and display of genome-wide expression patterns, Proc. Natl. Acad. Sci. USA, 95:14863-14868, 1998.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1
  • 144
    • 0042674201 scopus 로고    scopus 로고
    • Linkage analysis of quantitative trait loci in the presence of heterogeneity
    • Ekstrom, C.T. and P. Dalgaard, Linkage analysis of quantitative trait loci in the presence of heterogeneity, Hum. Hered., 55:16-26, 2003.
    • (2003) Hum. Hered. , vol.55 , pp. 16-26
    • Ekstrom, C.T.1    Dalgaard, P.2
  • 145
    • 0038444122 scopus 로고    scopus 로고
    • Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
    • Elkon, R. et al., Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells, Genome Res., 13:773-780, 2003.
    • (2003) Genome Res. , vol.13 , pp. 773-780
    • Elkon, R.1
  • 147
    • 0033949377 scopus 로고    scopus 로고
    • Haseman and Elston revisited
    • Elston, R.C. et al., Haseman and Elston revisited, Genet. Epidemiol., 19:1-17, 2000.
    • (2000) Genet. Epidemiol. , vol.19 , pp. 1-17
    • Elston, R.C.1
  • 148
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright, A.J. et al., Protein interaction maps for complete genomes based on gene fusion events, Nature, 402:86-90, 1999.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1
  • 149
    • 0034787652 scopus 로고    scopus 로고
    • Assessing linkage of immunoglobulin E using a metaanalysis approach
    • Etzel, C.J. and T.J. Costello, Assessing linkage of immunoglobulin E using a metaanalysis approach, Genet. Epidemiol., 21 Suppl 1:S97-S102, 2001.
    • (2001) Genet. Epidemiol. , vol.21 , pp. S97-S102
    • Etzel, C.J.1    Costello, T.J.2
  • 150
    • 0036302208 scopus 로고    scopus 로고
    • Meta-analysis of genetic-linkage analysis of quantitativetrait loci
    • Etzel, C.J. and R. Guerra, Meta-analysis of genetic-linkage analysis of quantitativetrait loci, Am. J. Hum. Genet., 71:56-65, 2002.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 56-65
    • Etzel, C.J.1    Guerra, R.2
  • 151
    • 30344446540 scopus 로고    scopus 로고
    • An updated meta-analysis approach for genetic linkage
    • Etzel, C.J., M. Liu, and T.J. Costello, An updated meta-analysis approach for genetic linkage, BMC Genet., 6 Suppl 1:S43, 2005.
    • (2005) BMC Genet. , vol.6 , pp. S43
    • Etzel, C.J.1    Liu, M.2    Costello, T.J.3
  • 152
  • 154
    • 41149083499 scopus 로고    scopus 로고
    • Genome-wide high-density SNP-based linkage analysis of infantile hypertrophic pyloric stenosis identifies loci on chromosomes 11q14-q22 and Xq23
    • Everett, K. et al., Genome-wide high-density SNP-based linkage analysis of infantile hypertrophic pyloric stenosis identifies loci on chromosomes 11q14-q22 and Xq23, Am. J. Hum. Genet., 82:756-762, 2008.
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 756-762
    • Everett, K.1
  • 157
    • 0027483312 scopus 로고
    • Distribution of the admixture test for the detection of linkage under heterogeneity
    • Faraway, J.J., Distribution of the admixture test for the detection of linkage under heterogeneity, Genet. Epidemiol., 10:75-83, 1993.
    • (1993) Genet. Epidemiol. , vol.10 , pp. 75-83
    • Faraway, J.J.1
  • 158
    • 0036076138 scopus 로고    scopus 로고
    • Regression-based quantitative-trait-locus mapping in the 21st century
    • Feingold, E., Regression-based quantitative-trait-locus mapping in the 21st century, Am. J. Hum. Genet., 71:217-222, 2002.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 217-222
    • Feingold, E.1
  • 159
    • 0027487931 scopus 로고
    • Gaussian models for genetic linkage analysis using complete high-resolution maps of identity by descent
    • Feingold, E., P.O. Brown, and D. Siegmund, Gaussian models for genetic linkage analysis using complete high-resolution maps of identity by descent, Am. J. Hum. Genet., 53:234-251, 1993.
    • (1993) Am. J. Hum. Genet. , vol.53 , pp. 234-251
    • Feingold, E.1    Brown, P.O.2    Siegmund, D.3
  • 162
    • 50449089356 scopus 로고    scopus 로고
    • Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder
    • Ferreira, M.A.R. et al., Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder, Nat. Genet., 40:1056-1058, 2008.
    • (2008) Nat. Genet. , vol.40 , pp. 1056-1058
    • Ferreira, M.A.R.1
  • 164
    • 23944478239 scopus 로고    scopus 로고
    • Meta-analysis of genome scans of age-related macular degeneration
    • Fisher, S.A. et al., Meta-analysis of genome scans of age-related macular degeneration, Hum. Mol. Genet., 14:2257-2264, 2005.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 2257-2264
    • Fisher, S.A.1
  • 165
    • 0038328965 scopus 로고    scopus 로고
    • Meta-analysis of four rheumatoid arthritis genome-wide linkage studies - confirmation of a susceptibility locus on chromosome 16
    • Fisher, S.A., J.S. Lanchbury, and C.M. Lewis, Meta-analysis of four rheumatoid arthritis genome-wide linkage studies - confirmation of a susceptibility locus on chromosome 16, Arthritis Rheum., 48:1200-1206, 2003.
    • (2003) Arthritis Rheum. , vol.48 , pp. 1200-1206
    • Fisher, S.A.1    Lanchbury, J.S.2    Lewis, C.M.3
  • 166
    • 70350345844 scopus 로고
    • Combination of independent tests
    • Krishnaiah, P.R. and P.K. Sen, eds., New York: North-Holland
    • Folks, J.L., Combination of independent tests, in Krishnaiah, P.R. and P.K. Sen, eds., Handbook of Statistics, vol. 4, pp. 113-121, New York: North-Holland, 1984.
    • (1984) Handbook of Statistics , vol.4 , pp. 113-121
    • Folks, J.L.1
  • 169
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian networks to analyze expression data
    • Friedman, N. et al., Using Bayesian networks to analyze expression data, J. Comput. Biol., 7:601-620, 2000.
    • (2000) J. Comput. Biol. , vol.7 , pp. 601-620
    • Friedman, N.1
  • 170
    • 0028947057 scopus 로고
    • Multipoint interval mapping of quantitative trait loci, using sib pairs
    • Fulker, D.W., S.S. Cherny, and L.R. Cardon, Multipoint interval mapping of quantitative trait loci, using sib pairs, Am. J. Hum. Genet., 56:1224-1233, 1995.
    • (1995) Am. J. Hum. Genet. , vol.56 , pp. 1224-1233
    • Fulker, D.W.1    Cherny, S.S.2    Cardon, L.R.3
  • 171
    • 46249095552 scopus 로고    scopus 로고
    • Evaluating statistical methods using plasmode data sets in the age of massive public databases: an illustration using false discovery rates
    • Gadbury, G.L. et al., Evaluating statistical methods using plasmode data sets in the age of massive public databases: an illustration using false discovery rates, PLoS Genet., 20:e1000098, 2008.
    • (2008) PLoS Genet. , vol.20 , pp. e1000098
    • Gadbury, G.L.1
  • 172
    • 0142186253 scopus 로고    scopus 로고
    • A metaanalysis of whole genome linkage screens in multiple sclerosis
    • GAMES and The Transatlantic Multiple Sclerosis Genetics Cooperative, A metaanalysis of whole genome linkage screens in multiple sclerosis, J. Neuroimmunol., 143:39-46, 2003.
    • (2003) J. Neuroimmunol. , vol.143 , pp. 39-46
  • 173
    • 2942582468 scopus 로고    scopus 로고
    • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    • Gao, F., B.C. Foat, and H.J. Bussemaker, Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data, BMC Bioinformatics, 5:31, 2004.
    • (2004) BMC Bioinformatics , vol.5 , pp. 31
    • Gao, F.1    Foat, B.C.2    Bussemaker, H.J.3
  • 174
    • 0038048325 scopus 로고    scopus 로고
    • Inferring genetic networks and identifying compound mode of action via expression profiling
    • Gardner, T.S. et al., Inferring genetic networks and identifying compound mode of action via expression profiling, Science, 301:102-105, 2003.
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1
  • 175
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin, A. et al., Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature, 415:141-147, 2002.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.1
  • 176
    • 0041530047 scopus 로고    scopus 로고
    • Resampling-based multiple testing for microarray data analysis (with discussion)
    • Ge, Y., S. Dudoit, and T.P. Speed, Resampling-based multiple testing for microarray data analysis (with discussion), Test, 12:1-77, 2003.
    • (2003) Test , vol.12 , pp. 1-77
    • Ge, Y.1    Dudoit, S.2    Speed, T.P.3
  • 179
    • 28744458859 scopus 로고    scopus 로고
    • BioConductor: Open software development for computational biology and bioinformatics
    • Gentleman, R.C. et al., BioConductor: Open software development for computational biology and bioinformatics, Genome Biol., 5:R80, 2004, URL http://genomebiology.com/2004/5/10/R80.
    • (2004) Genome Biol. , vol.5 , pp. R80
    • Gentleman, R.C.1
  • 180
    • 4444305034 scopus 로고    scopus 로고
    • Mixture models for assessing differential expression in complex tissues using microarray data
    • Ghosh, D., Mixture models for assessing differential expression in complex tissues using microarray data, Bioinformatics, 20:1663-1669, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1663-1669
    • Ghosh, D.1
  • 181
    • 1542309545 scopus 로고    scopus 로고
    • Statistical issues and methods for meta-analysis of microarray data:a case study in prostate cancer
    • Ghosh, D. et al., Statistical issues and methods for meta-analysis of microarray data:a case study in prostate cancer, Funct. Integr. Genomics, 3:180-188, 2003.
    • (2003) Funct. Integr. Genomics , vol.3 , pp. 180-188
    • Ghosh, D.1
  • 183
    • 75149148136 scopus 로고    scopus 로고
    • Statistical design and data analysis for microarray experiments
    • Berger, A. and M.A. Roberts, eds., New York: Dekker
    • Goldstein, D.R. and M. Delorenzi, Statistical design and data analysis for microarray experiments, in Berger, A. and M.A. Roberts, eds., Unravelling Lipid Metabolism with Microarrays, New York: Dekker, 2004.
    • (2004) Unravelling Lipid Metabolism with Microarrays
    • Goldstein, D.R.1    Delorenzi, M.2
  • 184
    • 0032710198 scopus 로고    scopus 로고
    • Meta-analysis by combining parameter estimates: simulated linkage studies
    • Goldstein, D.R. et al., Meta-analysis by combining parameter estimates: simulated linkage studies, Genet. Epidemiol., 17 Suppl 1:S581-S586, 1999.
    • (1999) Genet. Epidemiol. , vol.17 , pp. S581-S586
    • Goldstein, D.R.1
  • 186
    • 35148839490 scopus 로고
    • A translational approach to portable ontologies
    • Gruber, T.R., A translational approach to portable ontologies, Knowl. Acquis., 5:199-220, 1993.
    • (1993) Knowl. Acquis. , vol.5 , pp. 199-220
    • Gruber, T.R.1
  • 187
    • 58149365542 scopus 로고
    • Toward principles for the design of ontologies used for knowledge sharing
    • Gruber, T.R., Toward principles for the design of ontologies used for knowledge sharing, Int. J. Hum.-Comput. St., 43:907-928, 1995.
    • (1995) Int. J. Hum.-Comput. St. , vol.43 , pp. 907-928
    • Gruber, T.R.1
  • 188
    • 0031738023 scopus 로고    scopus 로고
    • Meta-analysis methodology for combining non-parametric sibpair linkage results: genetic homogeneity and identical markers
    • Gu, C. et al., Meta-analysis methodology for combining non-parametric sibpair linkage results: genetic homogeneity and identical markers, Genet. Epidemiol., 15:609-626, 1998.
    • (1998) Genet. Epidemiol. , vol.15 , pp. 609-626
    • Gu, C.1
  • 189
    • 4243590899 scopus 로고    scopus 로고
    • Meta-analysis in human genetics studies
    • Elston, R.C., J. Olson, and L. Palmer, eds., New York: Wiley Reference in Biostatistics
    • Guerra, R., Meta-analysis in human genetics studies, in Elston, R.C., J. Olson, and L. Palmer, eds., Biostatistcal Genetics and Genetic Epidemiology, New York: Wiley Reference in Biostatistics, 2002.
    • (2002) Biostatistcal Genetics and Genetic Epidemiology
    • Guerra, R.1
  • 190
    • 0032749975 scopus 로고    scopus 로고
    • Meta-analysis by combining p-values: simulated linkage studies
    • Guerra, R. et al., Meta-analysis by combining p-values: simulated linkage studies, Genet. Epidemiol., 17 Suppl 1:S605-S609, 1999.
    • (1999) Genet. Epidemiol. , vol.17 , pp. S605-S609
    • Guerra, R.1
  • 191
    • 0036370537 scopus 로고    scopus 로고
    • Prediction of glycosylation across the human proteome and the correlation to protein function
    • Altman, R.B. et al., eds., River Edge, NJ: World Scientific
    • Gupta, R. and S. Brunak, Prediction of glycosylation across the human proteome and the correlation to protein function, in Altman, R.B. et al., eds., Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02), pp. 310-322, River Edge, NJ: World Scientific, 2002.
    • (2002) Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02) , pp. 310-322
    • Gupta, R.1    Brunak, S.2
  • 194
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan, D. and R.A. Weinberg, The hallmarks of cancer, Cell, 100:57-70, 2000.
    • (2000) Cell , vol.100 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 195
    • 3042595153 scopus 로고    scopus 로고
    • Patterns of bacterial gene movement
    • Hao, W. and G.B. Golding, Patterns of bacterial gene movement, Mol. Biol. Evol., 21:1294-1307, 2004.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1294-1307
    • Hao, W.1    Golding, G.B.2
  • 196
    • 33748090675 scopus 로고    scopus 로고
    • A modified test for small-study effects in meta-analyses of controlled trials with binary endpoints
    • Harbord, R.M., M. Egger, and J.A.C. Sterne, A modified test for small-study effects in meta-analyses of controlled trials with binary endpoints, Stat. Med., 25:3443-3457, 2006.
    • (2006) Stat. Med. , vol.25 , pp. 3443-3457
    • Harbord, R.M.1    Egger, M.2    Sterne, J.A.C.3
  • 197
    • 0035221560 scopus 로고    scopus 로고
    • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
    • Altman, R., ed., River Edge, NJ: World Scientific
    • Hartemink, A.J. et al., Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks, in Altman, R., ed., Pacific Symposium on Biocomputing 2001, pp. 422-433, River Edge, NJ: World Scientific, 2001.
    • (2001) Pacific Symposium on Biocomputing 2001 , pp. 422-433
    • Hartemink, A.J.1
  • 198
    • 0036366689 scopus 로고    scopus 로고
    • Combining location and expression data for principled discovery of genetic regulatory network models
    • Altman, R., ed., River Edge, NJ: World Scientific
    • Hartemink, A.J. et al., Combining location and expression data for principled discovery of genetic regulatory network models, in Altman, R., ed., Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02), pp. 437-449, River Edge, NJ: World Scientific, 2002.
    • (2002) Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02) , pp. 437-449
    • Hartemink, A.J.1
  • 199
    • 0015309467 scopus 로고
    • The investigation of linkage between a quantitative trait and a marker locus
    • Haseman, J.K. and R.C. Elston, The investigation of linkage between a quantitative trait and a marker locus, Behav. Genet., 2:3-19, 1972.
    • (1972) Behav. Genet. , vol.2 , pp. 3-19
    • Haseman, J.K.1    Elston, R.C.2
  • 200
    • 0032433332 scopus 로고    scopus 로고
    • Genetic linkage analysis of complex genetic traits by using affected sibling pairs
    • Hauser, E.R. and M. Boehnke, Genetic linkage analysis of complex genetic traits by using affected sibling pairs, Biometrics, 54:1238-1246, 1998.
    • (1998) Biometrics , vol.54 , pp. 1238-1246
    • Hauser, E.R.1    Boehnke, M.2
  • 202
    • 0033597176 scopus 로고    scopus 로고
    • The relationship between protein structure and function:a comprehensive survey with application to yeast genome
    • Hegyi, H. and M. Gerstein, The relationship between protein structure and function:a comprehensive survey with application to yeast genome, J. Mol. Biol., 288:147-164, 1999.
    • (1999) J. Mol. Biol. , vol.288 , pp. 147-164
    • Hegyi, H.1    Gerstein, M.2
  • 203
    • 27144444098 scopus 로고    scopus 로고
    • Meta-analysis of four new genome scans for lipid parameters and analysis of positional candidates in positive linkage regions
    • Heijmans, B.T. et al., Meta-analysis of four new genome scans for lipid parameters and analysis of positional candidates in positive linkage regions, Eur. J. Hum. Genet., 13:1143-1153, 2005.
    • (2005) Eur. J. Hum. Genet. , vol.13 , pp. 1143-1153
    • Heijmans, B.T.1
  • 204
    • 0025299784 scopus 로고
    • Reconstructing evolution of sequences subject to recombination using parsimony
    • Hein, J., Reconstructing evolution of sequences subject to recombination using parsimony, Math. Biosci., 98:185-200, 1990.
    • (1990) Math. Biosci. , vol.98 , pp. 185-200
    • Hein, J.1
  • 205
    • 18344396039 scopus 로고    scopus 로고
    • A meta-analytic investigation of linkage and association of common leptin receptor (LEPR) polymorphisms with body mass index and waist circumference
    • Heo, M. et al., A meta-analytic investigation of linkage and association of common leptin receptor (LEPR) polymorphisms with body mass index and waist circumference, Int. J. Obes. Relat. Metab. Disord., 26:640-646, 2002.
    • (2002) Int. J. Obes. Relat. Metab. Disord. , vol.26 , pp. 640-646
    • Heo, M.1
  • 206
    • 1442314701 scopus 로고    scopus 로고
    • Adipose tissue energy metabolism: altered gene expression profile of mice subjected to long-term caloric restriction
    • Higami, Y. et al., Adipose tissue energy metabolism: altered gene expression profile of mice subjected to long-term caloric restriction, FASEB J., 18:415-417, 2004.
    • (2004) FASEB J. , vol.18 , pp. 415-417
    • Higami, Y.1
  • 207
    • 12044258826 scopus 로고
    • Experimental approaches to phylogenetic analysis
    • Hillis, D.M. et al., Experimental approaches to phylogenetic analysis, Syst. Biol., 42:90-92, 1993.
    • (1993) Syst. Biol. , vol.42 , pp. 90-92
    • Hillis, D.M.1
  • 209
    • 2642613543 scopus 로고
    • Assessing molecular phylogenies
    • Hillis, D.M. and J.P. Huelsenbeck, Assessing molecular phylogenies, Science, 267:255-256, 1995.
    • (1995) Science , vol.267 , pp. 255-256
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 210
    • 0035044077 scopus 로고    scopus 로고
    • Assessment of prediction accuracy of protein function from protein-protein interaction data
    • Hishigaki, H. et al., Assessment of prediction accuracy of protein function from protein-protein interaction data, Yeast, 18:523-531, 2001.
    • (2001) Yeast , vol.18 , pp. 523-531
    • Hishigaki, H.1
  • 211
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho, Y. et al., Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature, 415:180-183, 2002.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 213
    • 0033977642 scopus 로고    scopus 로고
    • Generalized transduction of serotype 1/2 and serotype 4b strains of Listeria monocytogenes
    • Hodgson, D.A., Generalized transduction of serotype 1/2 and serotype 4b strains of Listeria monocytogenes, Mol. Microbiol., 35:312-323, 2000.
    • (2000) Mol. Microbiol. , vol.35 , pp. 312-323
    • Hodgson, D.A.1
  • 214
    • 56649097558 scopus 로고    scopus 로고
    • GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies
    • Holden, M. et al., GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies, Bioinformatics, 24:2784-2785, 2008.
    • (2008) Bioinformatics , vol.24 , pp. 2784-2785
    • Holden, M.1
  • 215
    • 26944493073 scopus 로고    scopus 로고
    • The importance of modelling heterogenity in complex disease: application to NIMH schizophrenia genetics initiative data
    • Holliday, E. et al., The importance of modelling heterogenity in complex disease: application to NIMH schizophrenia genetics initiative data, Hum. Genet., 117:160-167, 2005.
    • (2005) Hum. Genet. , vol.117 , pp. 160-167
    • Holliday, E.1
  • 216
    • 33646895693 scopus 로고    scopus 로고
    • Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data
    • Huang, D. and W. Pan, Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data, Bioinformatics, 22:1259, 2006.
    • (2006) Bioinformatics , vol.22 , pp. 1259
    • Huang, D.1    Pan, W.2
  • 217
    • 33645909894 scopus 로고    scopus 로고
    • Combining gene annotations and gene expression data in model-based clustering:Weighted method
    • Huang, D., P. Wei, and W. Pan, Combining gene annotations and gene expression data in model-based clustering:Weighted method, OMICS A Journal of Integrative Biology, 10, 2006.
    • (2006) OMICS A Journal of Integrative Biology , pp. 10
    • Huang, D.1    Wei, P.2    Pan, W.3
  • 218
    • 0037941536 scopus 로고    scopus 로고
    • Gene expression phenotypic models that predict the activity of oncogenic pathways
    • Huang, E. et al., Gene expression phenotypic models that predict the activity of oncogenic pathways, Nat. Genet., 34:226-230, 2003.
    • (2003) Nat. Genet. , vol.34 , pp. 226-230
    • Huang, E.1
  • 219
    • 0036690521 scopus 로고    scopus 로고
    • Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays
    • Huang, X. and W. Pan, Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays, Funct. Integr. Genomics, 2:126-183, 2002.
    • (2002) Funct. Integr. Genomics , vol.2 , pp. 126-183
    • Huang, X.1    Pan, W.2
  • 220
    • 20144377218 scopus 로고    scopus 로고
    • Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
    • Hubner, N. et al., Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease, Nat. Genet., 37:243-253, 2005.
    • (2005) Nat. Genet. , vol.37 , pp. 243-253
    • Hubner, N.1
  • 221
    • 0020744702 scopus 로고
    • Properties of the neutral allele model with intergenic recombination
    • Hudson, R.R., Properties of the neutral allele model with intergenic recombination, Theor. Popul. Biol., 23:183-201, 1983a.
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 222
    • 0000424609 scopus 로고
    • Testing the constant-rate neutral allele model with protein sequence data
    • Hudson, R.R., Testing the constant-rate neutral allele model with protein sequence data, Evolution, 37:203-217, 1983b.
    • (1983) Evolution , vol.37 , pp. 203-217
    • Hudson, R.R.1
  • 223
    • 0035072249 scopus 로고    scopus 로고
    • Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
    • Hughes, T.R. et al., Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer, Nat. Biotechnol., 19:342-347, 2001.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 342-347
    • Hughes, T.R.1
  • 224
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh, W.K. et al., Global analysis of protein localization in budding yeast, Nature, 425:686-691, 2003.
    • (2003) Nature , vol.425 , pp. 686-691
    • Huh, W.K.1
  • 225
    • 0036489048 scopus 로고    scopus 로고
    • Bayesian models for gene expression with DNA microarray data
    • Ibrahim, J.G., M.H. Chen, and R.J. Gray, Bayesian models for gene expression with DNA microarray data, J. Am. Stat. Assoc., 97:88-99, 2002.
    • (2002) J. Am. Stat. Assoc. , vol.97 , pp. 88-99
    • Ibrahim, J.G.1    Chen, M.H.2    Gray, R.J.3
  • 226
    • 0035775725 scopus 로고    scopus 로고
    • A new approach to decoding life: systems biology
    • Ideker, T., T. Galitski, and L. Hood, A new approach to decoding life: systems biology, Annu. Rev. Genom. Hum. G., 2:343-372, 2001.
    • (2001) Annu. Rev. Genom. Hum. G. , vol.2 , pp. 343-372
    • Ideker, T.1    Galitski, T.2    Hood, L.3
  • 227
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka, R. and R. Gentleman, R: A language for data analysis and graphics, J. Comput. Graph. Stat., 5:299-314, 1996.
    • (1996) J. Comput. Graph. Stat. , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 228
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium, Initial sequencing and analysis of the human genome, Nature, 409:860-921, 2001.
    • (2001) Nature , vol.409 , pp. 860-921
  • 229
    • 57149102071 scopus 로고    scopus 로고
    • Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis
    • Ionita-Laza, I. et al., Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis, Genomics, 93:22-26, 2009.
    • (2009) Genomics , vol.93 , pp. 22-26
    • Ionita-Laza, I.1
  • 230
    • 12344280017 scopus 로고    scopus 로고
    • Summaries of Affymetrix GeneChip probe level data
    • Irizarry, R.A. et al., Summaries of Affymetrix GeneChip probe level data, Nucleic Acids Res., 31:e15, 2003a.
    • (2003) Nucleic Acids Res. , vol.31 , pp. e15
    • Irizarry, R.A.1
  • 232
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry, R.A. et al., Exploration, normalization, and summaries of high density oligonucleotide array probe level data, Biostatistics, 4:249-264, 2003b.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1
  • 233
    • 18244384210 scopus 로고    scopus 로고
    • Multiple-laboratory comparison of microarray platforms
    • Irizarry, R.A. et al., Multiple-laboratory comparison of microarray platforms, Nat. Methods, 2:345-50, 2005.
    • (2005) Nat. Methods , vol.2 , pp. 345-350
    • Irizarry, R.A.1
  • 234
    • 33645326509 scopus 로고    scopus 로고
    • Comparison of Affymetrix GeneChip expression measures
    • Irizarry, R.A., Z. Wu, and H.A. Jaffee, Comparison of Affymetrix GeneChip expression measures, Bioinformatics, 22:789-794, 2006.
    • (2006) Bioinformatics , vol.22 , pp. 789-794
    • Irizarry, R.A.1    Wu, Z.2    Jaffee, H.A.3
  • 235
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two hybrid analysis to explore the yeast protein interactome
    • Ito, T. et al., A comprehensive two hybrid analysis to explore the yeast protein interactome, Proc. Natl. Acad. Sci. USA, 98:4569-4574, 2001.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 236
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • Ito, T. et al., Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins, Proc. Natl. Acad. Sci. USA, 97:1143-1147, 2000.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1143-1147
    • Ito, T.1
  • 237
    • 0037130961 scopus 로고    scopus 로고
    • A stem cell molecular signature
    • Ivanova, N.B. et al., A stem cell molecular signature, Science, 298:601-604, 2002.
    • (2002) Science , vol.298 , pp. 601-604
    • Ivanova, N.B.1
  • 238
    • 84972490741 scopus 로고
    • Selection models and the file drawer problem
    • Iyengar, S. and J. Greenhouse, Selection models and the file drawer problem, Stat. Sci., 3:109-117, 1988.
    • (1988) Stat. Sci. , vol.3 , pp. 109-117
    • Iyengar, S.1    Greenhouse, J.2
  • 239
    • 0034792708 scopus 로고    scopus 로고
    • Improved evidence for linkage on 6p and 5p with retrospective pooling of data from three asthma genome screens
    • Iyengar, S.K. et al., Improved evidence for linkage on 6p and 5p with retrospective pooling of data from three asthma genome screens, Genet. Epidemiol., 21 Suppl 1:S130-S135, 2001.
    • (2001) Genet. Epidemiol. , vol.21 , pp. S130-S135
    • Iyengar, S.K.1
  • 241
    • 0142179210 scopus 로고    scopus 로고
    • Local pooled error test for identifying differentially expressed genes with a small number of replicated microarrays
    • Jain, N. et al., Local pooled error test for identifying differentially expressed genes with a small number of replicated microarrays, Bioinformatics, 19:1945-1951, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1945-1951
    • Jain, N.1
  • 242
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting protein-protein interactions from genomic data
    • Jansen, R. et al., A Bayesian networks approach for predicting protein-protein interactions from genomic data, Science, 302:449-453, 2003.
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1
  • 244
    • 18444390875 scopus 로고    scopus 로고
    • Prediction of human protein function from post-translational modifications and localization features
    • Jensen, L.J. et al., Prediction of human protein function from post-translational modifications and localization features, J. Mol. Biol., 319:1257-1265, 2002.
    • (2002) J. Mol. Biol. , vol.319 , pp. 1257-1265
    • Jensen, L.J.1
  • 245
    • 85051830299 scopus 로고    scopus 로고
    • RefSeq refinements of UniGene-based gene matching improves the correlation between microarray platforms
    • Department of Biostatistics and Applied Mathematics
    • Ji, Y. et al., RefSeq refinements of UniGene-based gene matching improves the correlation between microarray platforms, Tech. rep., MD Anderson Cancer Center, Department of Biostatistics and Applied Mathematics, 2005.
    • (2005) Tech. rep., MD Anderson Cancer Center
    • Ji, Y.1
  • 246
    • 13244289883 scopus 로고    scopus 로고
    • Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes
    • Jiang, H. et al., Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes, BMC Bioinformatics, 5:81, 2004.
    • (2004) BMC Bioinformatics , vol.5 , pp. 81
    • Jiang, H.1
  • 247
    • 11244286087 scopus 로고    scopus 로고
    • Selective phenotyping for increased efficiency in genetic mapping studies
    • Jin, C. et al., Selective phenotyping for increased efficiency in genetic mapping studies, Genetics, 168:2285-2293, 2004.
    • (2004) Genetics , vol.168 , pp. 2285-2293
    • Jin, C.1
  • 248
    • 33750418625 scopus 로고    scopus 로고
    • Maximum likelihood of phylogenetic networks
    • Jin, G. et al., Maximum likelihood of phylogenetic networks, Bioinformatics, 22:2604-2611, 2006.
    • (2006) Bioinformatics , vol.22 , pp. 2604-2611
    • Jin, G.1
  • 249
    • 33846654919 scopus 로고    scopus 로고
    • Efficient parsimony-based methods for phylogenetic network reconstruction
    • Jin, G. et al., Efficient parsimony-based methods for phylogenetic network reconstruction, Bioinformatics, 23:e123-e128, 2007a.
    • (2007) Bioinformatics , vol.23 , pp. e123-e128
    • Jin, G.1
  • 250
    • 33845886105 scopus 로고    scopus 로고
    • Inferring phylogenetic networks by the maximum parsimony criterion:a case study
    • Jin, G. et al., Inferring phylogenetic networks by the maximum parsimony criterion:a case study, Mol. Biol. Evol., 24:324-337, 2007b.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 324-337
    • Jin, G.1
  • 251
    • 34547474120 scopus 로고    scopus 로고
    • A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance
    • Mandoiu, I. and A. Zelikovsky, eds.
    • Jin, G. et al., A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance, in Mandoiu, I. and A. Zelikovsky, eds., Proceedings of the International Symposium on Bioinformatics Research and Applications, vol. 4463 of Lecture Notes in Bioinformatics, pp. 61-72, 2007c.
    • (2007) Proceedings of the International Symposium on Bioinformatics Research and Applications, vol. 4463 of Lecture Notes in Bioinformatics , pp. 61-72
    • Jin, G.1
  • 252
    • 0035733752 scopus 로고    scopus 로고
    • The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
    • Jin, W. et al., The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster, Nat. Genet., 29:389-395, 2001.
    • (2001) Nat. Genet. , vol.29 , pp. 389-395
    • Jin, W.1
  • 253
    • 0344061508 scopus 로고
    • Mild association between the A/G polymorphism in the promoter of the apolipoprotein A-I gene and apolipoprotein A-I levels: A meta-analysis
    • Juo, S.H.H. et al., Mild association between the A/G polymorphism in the promoter of the apolipoprotein A-I gene and apolipoprotein A-I levels: A meta-analysis, Am. J. Med. Genet., 82:235-241, 1978.
    • (1978) Am. J. Med. Genet. , vol.82 , pp. 235-241
    • Juo, S.H.H.1
  • 255
    • 3042518853 scopus 로고    scopus 로고
    • A simple method for statistical analysis of intensity differences in microarray-derived gene expression data
    • Kamb, A. and A. Ramaswami, A simple method for statistical analysis of intensity differences in microarray-derived gene expression data, BMC Biotechnology, 1:8, 2001.
    • (2001) BMC Biotechnology , vol.1 , pp. 8
    • Kamb, A.1    Ramaswami, A.2
  • 256
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa, M. and S. Goto, KEGG: Kyoto Encyclopedia of Genes and Genomes, Nucleic Acids Res., 28:27-30, 2000.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 258
    • 0034160040 scopus 로고    scopus 로고
    • On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning
    • Kell, D.B. and R.D. King, On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning, Trends Biotechnol., 18:93-98, 2000.
    • (2000) Trends Biotechnol. , vol.18 , pp. 93-98
    • Kell, D.B.1    King, R.D.2
  • 259
    • 84967410527 scopus 로고    scopus 로고
    • Statistical methods for expression trait loci (ETL) mapping
    • Dept. of Biostatistics and Medical Informatics, Technical Report 184, Madison, WI
    • Kendziorski, C. et al., Statistical methods for expression trait loci (ETL) mapping, Tech. rep., University of Wisconsin, Dept. of Biostatistics and Medical Informatics, Technical Report 184, Madison, WI, 2004.
    • (2004) Tech. rep., University of Wisconsin
    • Kendziorski, C.1
  • 260
    • 33645068841 scopus 로고    scopus 로고
    • Statistical methods for expression quantitative trait loci (eQTL) mapping
    • Kendziorski, C. et al., Statistical methods for expression quantitative trait loci (eQTL) mapping, Biometrics, 62:19-27, 2006.
    • (2006) Biometrics , vol.62 , pp. 19-27
    • Kendziorski, C.1
  • 261
    • 0346888587 scopus 로고    scopus 로고
    • On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
    • Kendziorski, C.M. et al., On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles, Stat. Med., 22:3899-3914, 2003.
    • (2003) Stat. Med. , vol.22 , pp. 3899-3914
    • Kendziorski, C.M.1
  • 262
    • 0035032570 scopus 로고    scopus 로고
    • Statistical design and the analysis of gene expression microarray data
    • Kerr, M.K. and G.A. Churchill, Statistical design and the analysis of gene expression microarray data, Genet. Res., 77:123-128, 2001.
    • (2001) Genet. Res. , vol.77 , pp. 123-128
    • Kerr, M.K.1    Churchill, G.A.2
  • 263
    • 85051831524 scopus 로고    scopus 로고
    • Picking the most likely candidates for further development: Novel intersection-union tests for addressing multi-component hypotheses in comparative genomics
    • Alexandria, VA: American Statistical Association, CD-ROM
    • Kim, K. et al., Picking the most likely candidates for further development: Novel intersection-union tests for addressing multi-component hypotheses in comparative genomics, in Proceedings of the American Statistical Association, ENAR Section, Alexandria, VA: American Statistical Association, 2004, CD-ROM.
    • (2004) Proceedings of the American Statistical Association, ENAR Section
    • Kim, K.1
  • 264
    • 0014494672 scopus 로고
    • The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations
    • Kimura, M., The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations, Genetics, 61:893-903, 1969.
    • (1969) Genetics , vol.61 , pp. 893-903
    • Kimura, M.1
  • 265
    • 0035006162 scopus 로고    scopus 로고
    • The utility of different representations of protein sequence for predicting functional class
    • King, R.D. et al., The utility of different representations of protein sequence for predicting functional class, Bioinformatics, 17:445-454, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 445-454
    • King, R.D.1
  • 267
    • 5444222846 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide scans for hypertension and blood pressure in Caucasians shows evidence of susceptibility regions on chromosomes 2 and 3
    • Koivukoski, L. et al., Meta-analysis of genome-wide scans for hypertension and blood pressure in Caucasians shows evidence of susceptibility regions on chromosomes 2 and 3, Hum. Mol. Genet., 13:2325-2332, 2004.
    • (2004) Hum. Mol. Genet. , vol.13 , pp. 2325-2332
    • Koivukoski, L.1
  • 268
    • 0041775676 scopus 로고    scopus 로고
    • Diffusion kernels on graphs and other discrete input spaces
    • Sammut, C. and A. Hoffmann, eds., San Francisco, CA: Morgan Kaufmann
    • Kondor, R. and J. Lafferty, Diffusion kernels on graphs and other discrete input spaces, in Sammut, C. and A. Hoffmann, eds., Proceedings of the International Conference on Machine Learning (ICML), pp. 315-322, San Francisco, CA: Morgan Kaufmann, 2002.
    • (2002) Proceedings of the International Conference on Machine Learning (ICML) , pp. 315-322
    • Kondor, R.1    Lafferty, J.2
  • 269
    • 23244447197 scopus 로고    scopus 로고
    • Significance testing for small sample microarray experiments
    • Kooperberg, C. et al., Significance testing for small sample microarray experiments, Stat. Med., 24:2281-2298, 2005.
    • (2005) Stat. Med. , vol.24 , pp. 2281-2298
    • Kooperberg, C.1
  • 270
    • 52949085789 scopus 로고    scopus 로고
    • Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
    • Korn, J.M. et al., Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs, Nat. Genet., 40:1253-1260, 2008.
    • (2008) Nat. Genet. , vol.40 , pp. 1253-1260
    • Korn, J.M.1
  • 271
    • 0012882905 scopus 로고
    • Combining independent chi-squared tests
    • Koziol, J.A. and M.D. Perlman, Combining independent chi-squared tests, J. Am. Stat. Assoc., 73:753-763, 1978.
    • (1978) J. Am. Stat. Assoc. , vol.73 , pp. 753-763
    • Koziol, J.A.1    Perlman, M.D.2
  • 272
    • 40849096166 scopus 로고    scopus 로고
    • The road to genome-wide association studies
    • Kruglyak, L., The road to genome-wide association studies, Nat. Rev. Genet., 9:314-318, 2008.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 314-318
    • Kruglyak, L.1
  • 273
    • 0029886532 scopus 로고    scopus 로고
    • Parametric and nonparametric linkage analysis: a unified multipoint approach
    • Kruglyak, L. et al., Parametric and nonparametric linkage analysis: a unified multipoint approach, Am. J. Hum. Genet., 58:1347-1363, 1996.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1347-1363
    • Kruglyak, L.1
  • 274
    • 0029046177 scopus 로고
    • Complete multipoint sib-pair analysis of qualitative and quantitative traits
    • Kruglyak, L. and E.S. Lander, Complete multipoint sib-pair analysis of qualitative and quantitative traits, Am. J. Hum. Genet., 57:439-454, 1995.
    • (1995) Am. J. Hum. Genet. , vol.57 , pp. 439-454
    • Kruglyak, L.1    Lander, E.S.2
  • 275
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • Kubatko, L.S. and J.H. Degnan, Inconsistency of phylogenetic estimates from concatenated data under coalescence, Syst. Biol., 56:17-24, 2007.
    • (2007) Syst. Biol. , vol.56 , pp. 17-24
    • Kubatko, L.S.1    Degnan, J.H.2
  • 276
    • 8744290969 scopus 로고    scopus 로고
    • A novel, high-performance random array platform for quantitative gene expression profiling
    • Kuhn, K. et al., A novel, high-performance random array platform for quantitative gene expression profiling, Genome Res., 14:2347-2356, 2004.
    • (2004) Genome Res. , vol.14 , pp. 2347-2356
    • Kuhn, K.1
  • 278
    • 56449101000 scopus 로고    scopus 로고
    • The Apicomplexan whole-genome phylogeny:an analysis of incongruence among gene trees
    • Kuo, C.H., J.P. Wares, and J.C. Kissinger, The Apicomplexan whole-genome phylogeny:an analysis of incongruence among gene trees, Mol. Biol. Evol., 25:2689-2698, 2008.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 2689-2698
    • Kuo, C.H.1    Wares, J.P.2    Kissinger, J.C.3
  • 279
    • 0036211063 scopus 로고    scopus 로고
    • Analysis of matched mRNA measurements from two different microarray technologies
    • Kuo, W.P. et al., Analysis of matched mRNA measurements from two different microarray technologies, Bioinformatics, 18:405-412, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 405-412
    • Kuo, W.P.1
  • 281
    • 0042354669 scopus 로고    scopus 로고
    • A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer
    • Lamb, J. et al., A mechanism of cyclin D1 action encoded in the patterns of gene expression in human cancer, Cell, 114:323-334, 2003.
    • (2003) Cell , vol.114 , pp. 323-334
    • Lamb, J.1
  • 282
    • 0042819605 scopus 로고    scopus 로고
    • Dimension reduction for mapping mRNA abundance as quantitative traits
    • Lan, H. et al., Dimension reduction for mapping mRNA abundance as quantitative traits, Genetics, 164:1607-1614, 2003.
    • (2003) Genetics , vol.164 , pp. 1607-1614
    • Lan, H.1
  • 283
    • 8844263749 scopus 로고    scopus 로고
    • A statistical framework for genomic data fusion
    • Lanckriet, G.R.G. et al., A statistical framework for genomic data fusion, Bioinformatics, 20:2626-2635, 2004a.
    • (2004) Bioinformatics , vol.20 , pp. 2626-2635
    • Lanckriet, G.R.G.1
  • 284
    • 2442674422 scopus 로고    scopus 로고
    • Kernel-based data fusion and its application to protein function prediction in yeast
    • Altman, R., ed., River Edge, NJ: World Scientific
    • Lanckriet, G.R.G. et al., Kernel-based data fusion and its application to protein function prediction in yeast, in Altman, R., ed., Pacific Symposium on Biocomputing 2004, pp. 300-311, River Edge, NJ: World Scientific, 2004b.
    • (2004) Pacific Symposium on Biocomputing 2004 , pp. 300-311
    • Lanckriet, G.R.G.1
  • 285
    • 31944437126 scopus 로고    scopus 로고
    • Kernel-based integration of genomic data using semidefinite programming
    • Schölkopf, B., K. Tsuda, and J.P. Vert, eds., Cambridge, MA: MIT Press
    • Lanckriet, G.R.G. et al., Kernel-based integration of genomic data using semidefinite programming, in Schölkopf, B., K. Tsuda, and J.P. Vert, eds., Kernel Methods in Computational Biology, pp. 71-92, Cambridge, MA: MIT Press, 2004c.
    • (2004) Kernel Methods in Computational Biology , pp. 71-92
    • Lanckriet, G.R.G.1
  • 286
    • 0028877463 scopus 로고
    • Genetic dissection of complex traits - guidelines for interpreting and reporting linkage results
    • Lander, E. and L. Kruglyak, Genetic dissection of complex traits - guidelines for interpreting and reporting linkage results, Nat. Genet., 11:241-247, 1995.
    • (1995) Nat. Genet. , vol.11 , pp. 241-247
    • Lander, E.1    Kruglyak, L.2
  • 287
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander, E.S. and D. Botstein, Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps, Genetics, 121:185-199, 1989.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.S.1    Botstein, D.2
  • 288
    • 0043190944 scopus 로고    scopus 로고
    • Mendel version 4.0: A complete package for the exact genetic analysis of discrete traits in pedigree and population data sets
    • Lange, K. et al., Mendel version 4.0: A complete package for the exact genetic analysis of discrete traits in pedigree and population data sets, Am. J. Hum. Genet., 69 (supplement):504, 2001.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 504
    • Lange, K.1
  • 289
    • 0004047518 scopus 로고    scopus 로고
    • Oxford: Oxford University Press
    • Lauritzen, S., Graphical Models, Oxford: Oxford University Press, 1996.
    • (1996) Graphical Models
    • Lauritzen, S.1
  • 290
    • 4344648104 scopus 로고    scopus 로고
    • Score test for detecting linkage to complex traits in selected samples
    • Lebrec, J., H. Putter, and J.C. van Houwelingen, Score test for detecting linkage to complex traits in selected samples, Genet. Epidemiol., 27:97-108, 2004.
    • (2004) Genet. Epidemiol. , vol.27 , pp. 97-108
    • Lebrec, J.1    Putter, H.2    van Houwelingen, J.C.3
  • 291
    • 33645939728 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions using protein localization and gene expression data
    • Lee, H.J. et al., Assessment of the reliability of protein-protein interactions using protein localization and gene expression data, in Proceedings of the International Joint Conference of InCoB, AASBi and KSBI (BIOINFO 2005), 2005a, URL http://www-hto.usc.edu/people/tingchen/MyPublication/Bioinfo-Localization-2005.pdf.
    • (2005) Proceedings of the International Joint Conference of InCoB, AASBi and KSBI (BIOINFO 2005)
    • Lee, H.J.1
  • 292
    • 33645901213 scopus 로고    scopus 로고
    • Diffusion kernel based logistic regression models for protein function prediction
    • Lee, H.J. et al., Diffusion kernel based logistic regression models for protein function prediction, OMICS, 10:40-55, 2006.
    • (2006) OMICS , vol.10 , pp. 40-55
    • Lee, H.J.1
  • 293
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee, H.K. et al., Coexpression analysis of human genes across many microarray data sets, Genome Res., 14:1085-1094, 2004.
    • (2004) Genome Res. , vol.14 , pp. 1085-1094
    • Lee, H.K.1
  • 294
    • 0142236714 scopus 로고    scopus 로고
    • Discovery and validation of microarray gene expression patterns
    • Lee, J.K., Discovery and validation of microarray gene expression patterns, LabMedica Intern., 19:8-10, 2002.
    • (2002) LabMedica Intern. , vol.19 , pp. 8-10
    • Lee, J.K.1
  • 295
    • 84975918894 scopus 로고    scopus 로고
    • An S-PLUS library for the analysis of differential expression
    • Parmigiani, G. et al., New York: Springer-Verlag
    • Lee, J.K. and M. O'Connell, An S-PLUS library for the analysis of differential expression, in Parmigiani, G. et al., eds., The Analysis of Gene Expression Data:Methods and Software, pp. 163-184, New York: Springer-Verlag, 2003.
    • (2003) The Analysis of Gene Expression Data:Methods and Software , pp. 163-184
    • Lee, J.K.1    O'Connell, M.2
  • 296
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee, T.I. et al., Transcriptional regulatory networks in Saccharomyces cerevisiae, Science, 298:799-804, 2002.
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1
  • 297
    • 24944489239 scopus 로고    scopus 로고
    • Microarray profiling of isolated abdominal subcutaneous adipocytes from obese vs non-obese Pima Indians: increased expression of inflammationrelated genes
    • Lee, Y.H. et al., Microarray profiling of isolated abdominal subcutaneous adipocytes from obese vs non-obese Pima Indians: increased expression of inflammationrelated genes, Diabetologia, 48:1776-1783, 2005b.
    • (2005) Diabetologia , vol.48 , pp. 1776-1783
    • Lee, Y.H.1
  • 298
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: The case of the γ-proteobacteria
    • Lerat, E., V. Daubin, and N.A. Moran, From gene trees to organismal phylogeny in prokaryotes: The case of the γ-proteobacteria, PLoS Biol., 1:1-9, 2003.
    • (2003) PLoS Biol. , vol.1 , pp. 1-9
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 299
    • 1542271409 scopus 로고    scopus 로고
    • Predicting protein function from protein/protein interaction data: a probabilistic approach
    • Letovsky, S. and S. Kasif, Predicting protein function from protein/protein interaction data: a probabilistic approach, Bioinformatics, 19 (Suppl. 1):197-204, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 197-204
    • Letovsky, S.1    Kasif, S.2
  • 300
    • 18344389404 scopus 로고    scopus 로고
    • No major schizophrenia locus detected on chromosome 1q in a large multicenter sample
    • Levinson, D.F. et al., No major schizophrenia locus detected on chromosome 1q in a large multicenter sample, Science, 296:739-741, 2002.
    • (2002) Science , vol.296 , pp. 739-741
    • Levinson, D.F.1
  • 301
    • 0038003197 scopus 로고    scopus 로고
    • Genome scan meta-analysis of schizophrenia and bipolar disorder, part I: Methods and power analysis
    • Levinson, D.F. et al., Genome scan meta-analysis of schizophrenia and bipolar disorder, part I: Methods and power analysis, Am. J. Hum. Genet., 73:17-33, 2003.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 17-33
    • Levinson, D.F.1
  • 302
    • 40849101803 scopus 로고    scopus 로고
    • Boston, MA: Jones and Bartlett Boston, 9th ed.
    • Lewin, B., ed., Genes IX, Boston, MA: Jones and Bartlett Boston, 9th ed., 2007.
    • (2007) Genes IX
    • Lewin, B.1
  • 303
    • 0038003196 scopus 로고    scopus 로고
    • Genome scan meta-analysis of schizophrenia and bipolar disorder, part II: Schizophrenia
    • Lewis, C.M. et al., Genome scan meta-analysis of schizophrenia and bipolar disorder, part II: Schizophrenia, Am. J. Hum. Genet., 73:34-48, 2003.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 34-48
    • Lewis, C.M.1
  • 304
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li, C. and W.H. Wong, Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection, Proc. Natl. Acad. Sci. USA, 98:31-36, 2001.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 305
    • 27744476660 scopus 로고    scopus 로고
    • Genetical genomics: combining genetics with gene expression analysis
    • Li, J. and M. Burmeister, Genetical genomics: combining genetics with gene expression analysis, Hum. Mol. Genet., 14:R163-R169, 2005.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. R163-R169
    • Li, J.1    Burmeister, M.2
  • 306
    • 0029782992 scopus 로고    scopus 로고
    • Random effects model for meta-analysis of multiple quantitative sibpair linkage studies
    • Li, Z. and D.C. Rao, Random effects model for meta-analysis of multiple quantitative sibpair linkage studies, Genet. Epidemiol., 13:377-383, 1996.
    • (1996) Genet. Epidemiol. , vol.13 , pp. 377-383
    • Li, Z.1    Rao, D.C.2
  • 307
    • 0031616241 scopus 로고    scopus 로고
    • REVEAL, a general reverse engineering algorithm for inference of genetic network architectures
    • Altman, R., ed., River Edge, NJ: World Scientific
    • Liang, S., S. Fuhrman, and R. Somogyi, REVEAL, a general reverse engineering algorithm for inference of genetic network architectures, in Altman, R., ed., Pacific Symposium on Biocomputing 1998, pp. 18-29, River Edge, NJ: World Scientific, 1998.
    • (1998) Pacific Symposium on Biocomputing 1998 , pp. 18-29
    • Liang, S.1    Fuhrman, S.2    Somogyi, R.3
  • 308
    • 0345824737 scopus 로고    scopus 로고
    • Network component analysis: reconstruction of regulatory signals in biological systems
    • Liao, J.C. et al., Network component analysis: reconstruction of regulatory signals in biological systems, Proc. Natl. Acad. Sci. USA, 100:15522-15527, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15522-15527
    • Liao, J.C.1
  • 309
    • 13244265581 scopus 로고    scopus 로고
    • Information assessment on predicting protein-protein interactions
    • Lin, N. et al., Information assessment on predicting protein-protein interactions, BMC Bioinformatics, 5:154, 2004.
    • (2004) BMC Bioinformatics , vol.5 , pp. 154
    • Lin, N.1
  • 310
    • 17044416291 scopus 로고    scopus 로고
    • Reconstructing patterns of reticulate evolution in plants
    • Linder, C.R. and L.H. Rieseberg, Reconstructing patterns of reticulate evolution in plants, Am. J. Bot., 91:1700-1708, 2004.
    • (2004) Am. J. Bot. , vol.91 , pp. 1700-1708
    • Linder, C.R.1    Rieseberg, L.H.2
  • 311
    • 10744220575 scopus 로고    scopus 로고
    • Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans
    • Linn, S.C. et al., Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans, American Journal of Pathology, 163:2383-2395, 2003.
    • (2003) American Journal of Pathology , vol.163 , pp. 2383-2395
    • Linn, S.C.1
  • 313
    • 34548575126 scopus 로고    scopus 로고
    • Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
    • Liu, L. and D.K. Pearl, Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions, Syst. Biol., 56:504-514, 2007.
    • (2007) Syst. Biol. , vol.56 , pp. 504-514
    • Liu, L.1    Pearl, D.K.2
  • 314
    • 0036324753 scopus 로고    scopus 로고
    • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    • Liu, X.S., D.L. Brutlag, and J.S. Liu, An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments, Nat. Biotechnol., 20:835-839, 2002.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 835-839
    • Liu, X.S.1    Brutlag, D.L.2    Liu, J.S.3
  • 315
    • 10544256600 scopus 로고    scopus 로고
    • Expression monitoring by hybridization to high-density oligonucleotide arrays
    • Lockhart, D.J. et al., Expression monitoring by hybridization to high-density oligonucleotide arrays, Nat. Biotechnol., 14:1675-1680, 1996.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 1675-1680
    • Lockhart, D.J.1
  • 316
    • 0035190322 scopus 로고    scopus 로고
    • A Bayesian hierarchical model for allele frequencies
    • Lockwood, J.R., K. Roeder, and B. Devlin, A Bayesian hierarchical model for allele frequencies, Genet. Epidemiol., 20:17-33, 2001.
    • (2001) Genet. Epidemiol. , vol.20 , pp. 17-33
    • Lockwood, J.R.1    Roeder, K.2    Devlin, B.3
  • 317
    • 0034798478 scopus 로고    scopus 로고
    • Weighting schemes in pooled linkage analysis
    • Loesgen, S. et al.,Weighting schemes in pooled linkage analysis, Genet. Epidemiol., 21 Suppl 1:S142-S147, 2001.
    • (2001) Genet. Epidemiol. , vol.21 , pp. S142-S147
    • Loesgen, S.1
  • 318
    • 85051812447 scopus 로고    scopus 로고
    • Microarray analysis of two interacting treatments: a linear model
    • Sweden, Department of Mathematics
    • Lönnstedt, I. et al., Microarray analysis of two interacting treatments: a linear model, Tech. rep., Uppsala University, Sweden, Department of Mathematics, 2001.
    • (2001) Tech. rep., Uppsala University
    • Lönnstedt, I.1
  • 319
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • Lönnstedt, I. and T.P. Speed, Replicated microarray data, Stat. Sinica, 12:31-46, 2002.
    • (2002) Stat. Sinica , vol.12 , pp. 31-46
    • Lönnstedt, I.1    Speed, T.P.2
  • 320
    • 22244447463 scopus 로고    scopus 로고
    • Assessing the limits of genomic data integration for predicting protein networks
    • Lu, L.J. et al., Assessing the limits of genomic data integration for predicting protein networks, Genome Res., 15:945-953, 2005.
    • (2005) Genome Res. , vol.15 , pp. 945-953
    • Lu, L.J.1
  • 322
    • 0034702030 scopus 로고    scopus 로고
    • Decreased expression of striatal signaling genes in a mouse model of Huntington's disease
    • Luthi-Carter, R. et al., Decreased expression of striatal signaling genes in a mouse model of Huntington's disease, Hum. Mol. Genet., 9:1259-1271, 2000.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 1259-1271
    • Luthi-Carter, R.1
  • 323
    • 0037101835 scopus 로고    scopus 로고
    • Dysregulation of gene expression in the R6/2 model of polyglutamine disease: parallel changes in muscle and brain
    • Luthi-Carter, R. et al., Dysregulation of gene expression in the R6/2 model of polyglutamine disease: parallel changes in muscle and brain, Hum. Mol. Genet., 11:1911-1926, 2002a.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 1911-1926
    • Luthi-Carter, R.1
  • 324
    • 0037101837 scopus 로고    scopus 로고
    • Polyglutamine and transcription: gene expression changes shared by DRPLA and Huntington's disease mouse models reveal contextindependent effects
    • Luthi-Carter, R. et al., Polyglutamine and transcription: gene expression changes shared by DRPLA and Huntington's disease mouse models reveal contextindependent effects, Hum. Mol. Genet., 11:1927-1937, 2002b.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 1927-1937
    • Luthi-Carter, R.1
  • 325
    • 0031654093 scopus 로고    scopus 로고
    • On reconstructing species trees from gene trees in terms of duplications and losses
    • Istrail, S., P. Pevzner, and M. Waterman, eds., New York: Association for Computing Machinery
    • Ma, B., M. Li, and L. Zhang, On reconstructing species trees from gene trees in terms of duplications and losses, in Istrail, S., P. Pevzner, and M. Waterman, eds., Proceedings of the Second Annual International Conference on Computational Molecular Biology (RECOMB98), pp. 182-191, New York: Association for Computing Machinery, 1998.
    • (1998) Proceedings of the Second Annual International Conference on Computational Molecular Biology (RECOMB98) , pp. 182-191
    • Ma, B.1    Li, M.2    Zhang, L.3
  • 326
    • 0034938644 scopus 로고    scopus 로고
    • From gene trees to species trees
    • Ma, B., M. Li, and L. Zhang, From gene trees to species trees, SIAM J. Comput., 30:729-752, 2000.
    • (2000) SIAM J. Comput. , vol.30 , pp. 729-752
    • Ma, B.1    Li, M.2    Zhang, L.3
  • 327
    • 60549109896 scopus 로고    scopus 로고
    • Regularized gene selection in cancer microarray meta-analysis
    • Ma, S. and J. Huang, Regularized gene selection in cancer microarray meta-analysis, BMC Bioinformatics, 10:1, 2009.
    • (2009) BMC Bioinformatics , vol.10 , pp. 1
    • Ma, S.1    Huang, J.2
  • 328
    • 18944369385 scopus 로고    scopus 로고
    • Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
    • MacLeod, D. et al., Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement, BMC Evol. Biol., 8:27, 2005.
    • (2005) BMC Evol. Biol. , vol.8 , pp. 27
    • MacLeod, D.1
  • 330
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison, W.P., Gene trees in species trees, Syst. Biol., 46:523-536, 1997.
    • (1997) Syst. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 331
    • 33644606488 scopus 로고    scopus 로고
    • Inferring phylogeny despite incomplete lineage sorting
    • Maddison, W.P. and L.L. Knowles, Inferring phylogeny despite incomplete lineage sorting, Syst. Biol., 55:21-30, 2006.
    • (2006) Syst. Biol. , vol.55 , pp. 21-30
    • Maddison, W.P.1    Knowles, L.L.2
  • 332
    • 12144286757 scopus 로고    scopus 로고
    • A comparison of oligonucleotide and cDNA-based microarray systems
    • Mah, N. et al., A comparison of oligonucleotide and cDNA-based microarray systems, Physiol. Genomics, 16:361-370, 2004.
    • (2004) Physiol. Genomics , vol.16 , pp. 361-370
    • Mah, N.1
  • 333
    • 0034894308 scopus 로고    scopus 로고
    • T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks
    • Makarenkov, V., T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks, Bioinformatics, 17:664-668, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 664-668
    • Makarenkov, V.1
  • 334
    • 17844367344 scopus 로고    scopus 로고
    • Hybridization as an invasion of the genome
    • Mallet, J., Hybridization as an invasion of the genome, Trends Ecol. Evol., 20:229-237, 2005.
    • (2005) Trends Ecol. Evol. , vol.20 , pp. 229-237
    • Mallet, J.1
  • 335
    • 33947219934 scopus 로고    scopus 로고
    • Hybrid speciation
    • Mallet, J., Hybrid speciation, Nature, 446:279-283, 2007.
    • (2007) Nature , vol.446 , pp. 279-283
    • Mallet, J.1
  • 336
    • 16044373842 scopus 로고    scopus 로고
    • Exon 1 of the HD gene with an expanded CAG repeat is sufficient to cause a progressive neurological phenotype in transgenic mice
    • Mangiarini, L. et al., Exon 1 of the HD gene with an expanded CAG repeat is sufficient to cause a progressive neurological phenotype in transgenic mice, Cell, 87:493-506, 1996.
    • (1996) Cell , vol.87 , pp. 493-506
    • Mangiarini, L.1
  • 337
    • 3242672318 scopus 로고    scopus 로고
    • Meta-analysis of 13 genome scans reveals multiple cleft lip/palate genes with novel loci on 9q21 and 2q32-35
    • Marazita, M.L. et al., Meta-analysis of 13 genome scans reveals multiple cleft lip/palate genes with novel loci on 9q21 and 2q32-35, Am. J. Hum. Genet., 75:161-173, 2004.
    • (2004) Am. J. Hum. Genet. , vol.75 , pp. 161-173
    • Marazita, M.L.1
  • 338
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte, E.M. et al., Detecting protein function and protein-protein interactions from genome sequences, Science, 285:751-753, 1999a.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1
  • 339
    • 0033523854 scopus 로고    scopus 로고
    • A combined algorithm for genome-wide prediction of protein function
    • Marcotte, E.M. et al., A combined algorithm for genome-wide prediction of protein function, Nature, 402:83-86, 1999b.
    • (1999) Nature , vol.402 , pp. 83-86
    • Marcotte, E.M.1
  • 340
    • 7444234286 scopus 로고    scopus 로고
    • Getting the noise out of gene arrays
    • Marshall, E., Getting the noise out of gene arrays, Science, 306:630-631, 2004.
    • (2004) Science , vol.306 , pp. 630-631
    • Marshall, E.1
  • 341
    • 9644254192 scopus 로고    scopus 로고
    • Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid
    • McClelland, M. et al., Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid, Nat. Genet., 36:1268-1274, 2004.
    • (2004) Nat. Genet. , vol.36 , pp. 1268-1274
    • McClelland, M.1
  • 342
    • 25444466232 scopus 로고    scopus 로고
    • Combined analysis from eleven linkage studies of bipolar disorder provides strong evidence of susceptibility loci on chromosomes 6q and 8q
    • McQueen, M.B. et al., Combined analysis from eleven linkage studies of bipolar disorder provides strong evidence of susceptibility loci on chromosomes 6q and 8q, Am. J. Hum. Genet., 77:582-595, 2005.
    • (2005) Am. J. Hum. Genet. , vol.77 , pp. 582-595
    • McQueen, M.B.1
  • 343
    • 2442691827 scopus 로고    scopus 로고
    • Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements
    • Mecham, B.H. et al., Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements, Nucleic Acids Res., 32:e74, 2004a.
    • (2004) Nucleic Acids Res. , vol.32 , pp. e74
    • Mecham, B.H.1
  • 344
    • 4844222268 scopus 로고    scopus 로고
    • Increased measurement accuracy for sequence-verified microarray probes
    • Mecham, B.H. et al., Increased measurement accuracy for sequence-verified microarray probes, Physiol. Genomics, 18:308-315, 2004b.
    • (2004) Physiol. Genomics , vol.18 , pp. 308-315
    • Mecham, B.H.1
  • 345
    • 84950756067 scopus 로고
    • Computing an exact confidence interval for the common odds ratio in several 2x2 contingency tables
    • Mehta, C., N. Patel, and R. Gray, Computing an exact confidence interval for the common odds ratio in several 2x2 contingency tables, J. Am. Stat. Assoc., 80:969-973, 1985.
    • (1985) J. Am. Stat. Assoc. , vol.80 , pp. 969-973
    • Mehta, C.1    Patel, N.2    Gray, R.3
  • 346
    • 58249136809 scopus 로고    scopus 로고
    • Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
    • press
    • Meng, C. and L.S. Kubatko, Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model, Theor. Popul. Biol., 2009, in press.
    • (2009) Theor. Popul. Biol.
    • Meng, C.1    Kubatko, L.S.2
  • 347
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large scale data sets of protein-protein interactions
    • Mering, C.V. et al., Comparative assessment of large scale data sets of protein-protein interactions, Nature, 417:399-403, 2002.
    • (2002) Nature , vol.417 , pp. 399-403
    • Mering, C.V.1
  • 348
    • 9144242935 scopus 로고    scopus 로고
    • MIPS: analysis and annotation of proteins from whole genomes
    • Mewes, H. et al., MIPS: analysis and annotation of proteins from whole genomes, Nucleic Acids Res., 32:D41-D44, 2004.
    • (2004) Nucleic Acids Res. , vol.32 , pp. D41-D44
    • Mewes, H.1
  • 349
    • 0036081347 scopus 로고    scopus 로고
    • MIPS: a database for genomes and protein sequences
    • Mewes, H.W. et al., MIPS: a database for genomes and protein sequences, Nucleic Acids Res., 30:31-34, 2002.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 31-34
    • Mewes, H.W.1
  • 350
    • 0035802183 scopus 로고    scopus 로고
    • Prostasin, a potential serum marker for ovarian cancer: identification through microarray technology
    • Mok, S.C. et al., Prostasin, a potential serum marker for ovarian cancer: identification through microarray technology, J. Natl. Cancer Inst., 93:1458-1464, 2001.
    • (2001) J. Natl. Cancer Inst. , vol.93 , pp. 1458-1464
    • Mok, S.C.1
  • 351
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear gene trees
    • Moore, W.S., Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear gene trees, Evolution, 49:718-726, 1995.
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 352
    • 0038054341 scopus 로고    scopus 로고
    • PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
    • Mootha, V.K. et al., PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes, Nat. Genet., 34:267-273, 2003.
    • (2003) Nat. Genet. , vol.34 , pp. 267-273
    • Mootha, V.K.1
  • 353
    • 84949558457 scopus 로고
    • Random processes in genetics
    • Moran, P., Random processes in genetics, Proc. Cambridge Philos. Soc., 54:60-71, 1958.
    • (1958) Proc. Cambridge Philos. Soc. , vol.54 , pp. 60-71
    • Moran, P.1
  • 354
    • 0141450348 scopus 로고    scopus 로고
    • Comparison and meta-analysis of microarray data: from the bench to the computer desk
    • Moreau, Y. et al., Comparison and meta-analysis of microarray data: from the bench to the computer desk, Trends Genet., 19:570-577, 2003.
    • (2003) Trends Genet. , vol.19 , pp. 570-577
    • Moreau, Y.1
  • 355
    • 4644360028 scopus 로고    scopus 로고
    • Phylogenetic networks: modeling, reconstructibility, and accuracy
    • Moret, B.M.E. et al., Phylogenetic networks: modeling, reconstructibility, and accuracy, IEEE/ACM Trans. Comput.Biol. Bioinform., 1:13-23, 2004.
    • (2004) IEEE/ACM Trans. Comput.Biol. Bioinform. , vol.1 , pp. 13-23
    • Moret, B.M.E.1
  • 357
    • 4043128071 scopus 로고    scopus 로고
    • Genetic analysis of genome-wide variation in human gene expression
    • Morley, M. et al., Genetic analysis of genome-wide variation in human gene expression, Nature, 430:743-747, 2004.
    • (2004) Nature , vol.430 , pp. 743-747
    • Morley, M.1
  • 358
    • 33646052085 scopus 로고    scopus 로고
    • Pooling information across different studies and oligonucleotide microarray chip types to identify prognostic genes for lung cancer
    • Shoemaker, J. and S.M. Lin, eds., New York: Springer-Verlag
    • Morris, J.S. et al., Pooling information across different studies and oligonucleotide microarray chip types to identify prognostic genes for lung cancer, in Shoemaker, J. and S.M. Lin, eds., Methods of Microarray Data Analysis IV, pp. 51-66, New York: Springer-Verlag, 2005.
    • (2005) Methods of Microarray Data Analysis IV , pp. 51-66
    • Morris, J.S.1
  • 359
    • 1842529559 scopus 로고    scopus 로고
    • Capturing and profiling adult hair follicle stem cells
    • Morris, R.J. et al., Capturing and profiling adult hair follicle stem cells, Nat. Biotechnol., 22:411-417, 2004.
    • (2004) Nat. Biotechnol. , vol.22 , pp. 411-417
    • Morris, R.J.1
  • 360
    • 0043048571 scopus 로고
    • Sequential tests for the detection of linkage
    • Morton, N.E., Sequential tests for the detection of linkage, Am. J. Hum. Genet., 7:277-318, 1955.
    • (1955) Am. J. Hum. Genet. , vol.7 , pp. 277-318
    • Morton, N.E.1
  • 361
    • 9144239489 scopus 로고    scopus 로고
    • Plant genetics: gene transfer from parasitic to host plants
    • Mower, J.P. et al., Plant genetics: gene transfer from parasitic to host plants, Nature, 432:165-166, 2004.
    • (2004) Nature , vol.432 , pp. 165-166
    • Mower, J.P.1
  • 362
    • 0035212065 scopus 로고    scopus 로고
    • Is there a bias in proteome research?
    • Mrowka, R., A. A. Patzak, and H. Herzel, Is there a bias in proteome research?, Genome Res., 11:1971-1973, 2001.
    • (2001) Genome Res. , vol.11 , pp. 1971-1973
    • Mrowka, R.1    Patzak, A.A.2    Herzel, H.3
  • 363
    • 0029040210 scopus 로고
    • Hyperproinsulinaemia in obese fat/fat mice associated with a carboxypeptidase E mutation which reduces enzyme activity
    • Naggert, J.K. et al., Hyperproinsulinaemia in obese fat/fat mice associated with a carboxypeptidase E mutation which reduces enzyme activity, Nat. Genet., 10:135-142, 1995.
    • (1995) Nat. Genet. , vol.10 , pp. 135-142
    • Naggert, J.K.1
  • 364
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • Nakamura, Y. et al., Biased biological functions of horizontally transferred genes in prokaryotic genomes, Nat. Genet., 36:760-766, 2004.
    • (2004) Nat. Genet. , vol.36 , pp. 760-766
    • Nakamura, Y.1
  • 365
    • 33745512836 scopus 로고    scopus 로고
    • Reconstructing phylogenetic networks using maximum parsimony
    • Los Alamitos, California: IEEE Computer Society Press, doi:10.1109/CSB.2005.47
    • Nakhleh, L. et al., Reconstructing phylogenetic networks using maximum parsimony, in Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference (CSB2005), pp. 93-102, Los Alamitos, California: IEEE Computer Society Press, 2005a, doi:10.1109/CSB.2005.47.
    • (2005) Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference (CSB2005) , pp. 93-102
    • Nakhleh, L.1
  • 366
    • 0036372890 scopus 로고    scopus 로고
    • The accuracy of phylogenetic methods for large datasets
    • Altman, R., ed., River Edge, NJ: World Scientific
    • Nakhleh, L. et al., The accuracy of phylogenetic methods for large datasets, in Altman, R., ed., Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02), pp. 211-222, River Edge, NJ: World Scientific, 2002.
    • (2002) Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02) , pp. 211-222
    • Nakhleh, L.1
  • 367
    • 0035229987 scopus 로고    scopus 로고
    • Designing fast converging phylogenetic methods
    • Nakhleh, L. et al., Designing fast converging phylogenetic methods, Bioinformatics, 17 suppl 1:S190-S198, 2001a.
    • (2001) Bioinformatics , vol.17 , pp. S190-S198
    • Nakhleh, L.1
  • 372
    • 34249997024 scopus 로고    scopus 로고
    • Replicating genotype-phenotype associations
    • NCI-NHGRI Working Group on Replication in Association Studies, Replicating genotype-phenotype associations, Nature, 447:655-660, 2007.
    • (2007) Nature , vol.447 , pp. 655-660
  • 373
    • 0003446270 scopus 로고    scopus 로고
    • Department of Psychiatry, Virginia Commonwealth University; Richmond, VA, 5th ed.
    • Neale, M.C. et al., Mx: Statistical Modeling, Department of Psychiatry, Virginia Commonwealth University; Richmond, VA, 5th ed., 1999.
    • (1999) Mx: Statistical Modeling
    • Neale, M.C.1
  • 374
    • 1642306592 scopus 로고    scopus 로고
    • Parametric empirical Bayes methods for microarrays
    • Parmigiani, G. et al., eds., New York: Springer-Verlag
    • Newton, M. and C. Kendziorski, Parametric empirical Bayes methods for microarrays, in Parmigiani, G. et al., eds., The Analysis of Gene Expression Data: Methods and Software, pp. 254-271, New York: Springer-Verlag, 2003.
    • (2003) The Analysis of Gene Expression Data: Methods and Software , pp. 254-271
    • Newton, M.1    Kendziorski, C.2
  • 375
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • Newton, M.A. et al., On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data, J. Comput. Biol., 8:37-52, 2001.
    • (2001) J. Comput. Biol. , vol.8 , pp. 37-52
    • Newton, M.A.1
  • 376
    • 4444235995 scopus 로고    scopus 로고
    • Detecting differential gene expression with a semiparametric hierarchical mixture method
    • Newton, M.A. et al., Detecting differential gene expression with a semiparametric hierarchical mixture method, Biostatistics, 5:155-176, 2004.
    • (2004) Biostatistics , vol.5 , pp. 155-176
    • Newton, M.A.1
  • 377
    • 58149330480 scopus 로고    scopus 로고
    • Using gene expression to investigate the genetic basis of complex disorders
    • Nica, A.C. and E.T. Dermitzakis, Using gene expression to investigate the genetic basis of complex disorders, Hum. Mol. Genet., 17:R129-R134, 2008.
    • (2008) Hum. Mol. Genet. , vol.17 , pp. R129-R134
    • Nica, A.C.1    Dermitzakis, E.T.2
  • 378
    • 0035400648 scopus 로고    scopus 로고
    • Gene trees and species trees are not the same
    • Nichols, R., Gene trees and species trees are not the same, Trends Ecol. Evol., 16:358-364, 2001.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 358-364
    • Nichols, R.1
  • 379
    • 0037070754 scopus 로고    scopus 로고
    • Molecular characterization of soft tissue tumours: a gene expression study
    • Nielsen, T.O. et al., Molecular characterization of soft tissue tumours: a gene expression study, Lancet, 359:1301-1307, 2002.
    • (2002) Lancet , vol.359 , pp. 1301-1307
    • Nielsen, T.O.1
  • 380
    • 33750219172 scopus 로고    scopus 로고
    • Speciation genetics: evolving approaches
    • Noor, M.A. and J.L. Feder, Speciation genetics: evolving approaches, Nat. Rev. Genet., 7:851-861, 2006.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 851-861
    • Noor, M.A.1    Feder, J.L.2
  • 381
    • 0033557255 scopus 로고    scopus 로고
    • Meta-analysis: formulating, evaluating, combining and reporting
    • Normand, S.L., Meta-analysis: formulating, evaluating, combining and reporting, Stat. Med., 18:321-359, 1999.
    • (1999) Stat. Med. , vol.18 , pp. 321-359
    • Normand, S.L.1
  • 382
    • 0037322299 scopus 로고    scopus 로고
    • A note on the calculation of empirical P values from Monte Carlo procedures
    • North, B.V., D. Curtis, and P.C. Sham, A note on the calculation of empirical P values from Monte Carlo procedures, Am. J. Hum. Genet., 72:498-499, 2003.
    • (2003) Am. J. Hum. Genet. , vol.72 , pp. 498-499
    • North, B.V.1    Curtis, D.2    Sham, P.C.3
  • 383
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., J.G. Lawrence, and E.A. Groisman, Lateral gene transfer and the nature of bacterial innovation, Nature, 405:299-304, 2000.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 384
    • 33846180462 scopus 로고    scopus 로고
    • Differential expression, class discovery and class prediction using S-PLUS and S+ArrayAnalyzer
    • O'Connell, M., Differential expression, class discovery and class prediction using S-PLUS and S+ArrayAnalyzer, SIGKDD Explorations, 5:38-47, 2003.
    • (2003) SIGKDD Explorations , vol.5 , pp. 38-47
    • O'Connell, M.1
  • 385
    • 0141994861 scopus 로고    scopus 로고
    • Recent advances in the genetics of schizophrenia
    • O'Donovan, M.C., N.M. Williams, and M.J. Owen, Recent advances in the genetics of schizophrenia, Hum. Mol. Genet., 12:R125-R133, 2003.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. R125-R133
    • O'Donovan, M.C.1    Williams, N.M.2    Owen, M.J.3
  • 387
    • 0032756907 scopus 로고    scopus 로고
    • Linkage of chromosome 1 markers to alcoholism related phenotypes by sib pair linkage analysis of principal components
    • Olson, J.M. et al., Linkage of chromosome 1 markers to alcoholism related phenotypes by sib pair linkage analysis of principal components, Genet. Epidemiol., 17 Suppl 1:S271-S276, 1999.
    • (1999) Genet. Epidemiol. , vol.17 , pp. S271-S276
    • Olson, J.M.1
  • 388
    • 0027191513 scopus 로고
    • Linkage between quantitative trait and marker locus:methods using all relative pairs
    • Olson, J.M. and E. Wijsman, Linkage between quantitative trait and marker locus:methods using all relative pairs, Genet. Epidemiol., 10:87-102, 1993.
    • (1993) Genet. Epidemiol. , vol.10 , pp. 87-102
    • Olson, J.M.1    Wijsman, E.2
  • 389
    • 0033360995 scopus 로고    scopus 로고
    • When less is more: gene loss as an engine of evolutionary change
    • Olson, M.V., When less is more: gene loss as an engine of evolutionary change, Am. J. Hum. Genet., 64:18-23, 1999.
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 18-23
    • Olson, M.V.1
  • 390
    • 0003408936 scopus 로고    scopus 로고
    • Baltimore, MD: Johns Hopkins University Press, 3rd ed.
    • Ott, J., Analysis of Human Genetic Linkage, Baltimore, MD: Johns Hopkins University Press, 3rd ed., 1999.
    • (1999) Analysis of Human Genetic Linkage
    • Ott, J.1
  • 391
    • 0033055062 scopus 로고    scopus 로고
    • The use of gene clusters to infer functional coupling
    • Overbeek, R. et al., The use of gene clusters to infer functional coupling, Proc. Natl. Acad. Sci. USA, 96:2896-2901, 2000.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2896-2901
    • Overbeek, R.1
  • 392
    • 0031774059 scopus 로고    scopus 로고
    • GeneTree: Comparing gene and species phylogenies using reconciled trees
    • Page, R., GeneTree: Comparing gene and species phylogenies using reconciled trees, Bioinformatics, 14:819-820, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 819-820
    • Page, R.1
  • 393
    • 0031110886 scopus 로고    scopus 로고
    • From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem
    • Page, R. and M.A. Charleston, From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem, Mol. Phylogenet. Evol., 7:231-240, 1997.
    • (1997) Mol. Phylogenet. Evol. , vol.7 , pp. 231-240
    • Page, R.1    Charleston, M.A.2
  • 394
    • 0031949028 scopus 로고    scopus 로고
    • Trees within trees: phylogeny and historical associations
    • Page, R. and M.A. Charleston, Trees within trees: phylogeny and historical associations, Trends Ecol. Evol., 13:356-359, 1998.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 356-359
    • Page, R.1    Charleston, M.A.2
  • 395
    • 61449106698 scopus 로고    scopus 로고
    • Optimal multistage designs - a general framework for efficient genome-wide association studies
    • advance access at doi:10.1093/biostatistics/kxn036
    • Pahl, R., H. Schäfer, and H.H. Müller, Optimal multistage designs - a general framework for efficient genome-wide association studies, Biostatistics, 2008, advance access at doi:10.1093/biostatistics/kxn036.
    • (2008) Biostatistics
    • Pahl, R.1    Schäfer, H.2    Müller, H.H.3
  • 396
    • 33645289673 scopus 로고    scopus 로고
    • Incorporating gene functions as priors in model-based clustering of microarray gene expression data
    • Pan, W., Incorporating gene functions as priors in model-based clustering of microarray gene expression data, Bioinformatics, 22:795, 2006.
    • (2006) Bioinformatics , vol.22 , pp. 795
    • Pan, W.1
  • 397
    • 56749180189 scopus 로고    scopus 로고
    • Deciphering the genetics of hereditary non-syndromic colorectal cancer
    • Papaemmanuil, E. et al., Deciphering the genetics of hereditary non-syndromic colorectal cancer, Eur. J. Hum. Genet., 82:1477-1486, 2008.
    • (2008) Eur. J. Hum. Genet. , vol.82 , pp. 1477-1486
    • Papaemmanuil, E.1
  • 398
    • 28944449059 scopus 로고    scopus 로고
    • GSMA: software implementation of the genome search meta-analysis method
    • Pardi, F., D.F. Levinson, and C.M. Lewis, GSMA: software implementation of the genome search meta-analysis method, Bioinformatics, 21:4430-4431, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 4430-4431
    • Pardi, F.1    Levinson, D.F.2    Lewis, C.M.3
  • 399
    • 0023794134 scopus 로고
    • Identifying important results from multiple statistical tests
    • Parker, R.A. and R.B. Rothenberg, Identifying important results from multiple statistical tests, Stat. Med., 7:1031-1043, 1988.
    • (1988) Stat. Med. , vol.7 , pp. 1031-1043
    • Parker, R.A.1    Rothenberg, R.B.2
  • 400
    • 0036433548 scopus 로고    scopus 로고
    • A statistical framework for molecular-based classification in cancer
    • Parmigiani, G. et al., A statistical framework for molecular-based classification in cancer, J. Roy. Stat. Soc. B, 64:717-736, 2002.
    • (2002) J. Roy. Stat. Soc. B , vol.64 , pp. 717-736
    • Parmigiani, G.1
  • 401
    • 2442545413 scopus 로고    scopus 로고
    • A cross-study comparison of gene expression studies for the molecular classification of lung cancer
    • Parmigiani, G. et al., A cross-study comparison of gene expression studies for the molecular classification of lung cancer, Clin. Cancer Res., 10:2922-2927, 2004.
    • (2004) Clin. Cancer Res. , vol.10 , pp. 2922-2927
    • Parmigiani, G.1
  • 403
    • 0003327607 scopus 로고
    • On a method of determining whether a sample of size n supposed to have been drawn from a parent population having a known probability integral has probably been drawn at random
    • Pearson, K., On a method of determining whether a sample of size n supposed to have been drawn from a parent population having a known probability integral has probably been drawn at random, Biometrika, 25:379-410, 1933.
    • (1933) Biometrika , vol.25 , pp. 379-410
    • Pearson, K.1
  • 404
    • 40949127393 scopus 로고    scopus 로고
    • How to interpret a genome-wide association study
    • Pearson, T.A. and T.A. Maniolo, How to interpret a genome-wide association study, JAMA, 299:1335-1344, 2008.
    • (2008) JAMA , vol.299 , pp. 1335-1344
    • Pearson, T.A.1    Maniolo, T.A.2
  • 405
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis:protein phylogenetic profiles
    • Pellegrini, M. et al., Assigning protein functions by comparative genome analysis:protein phylogenetic profiles, Proc. Natl. Acad. Sci. USA, 96:4285-4288, 1999.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 4285-4288
    • Pellegrini, M.1
  • 406
    • 47549116997 scopus 로고    scopus 로고
    • A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
    • Peña-Castillo, L. et al., A critical assessment of Mus musculus gene function prediction using integrated genomic evidence, Genome Biol., 9 Suppl 1:S2, 2008.
    • (2008) Genome Biol. , vol.9 , pp. S2
    • Peña-Castillo, L.1
  • 408
    • 10744224197 scopus 로고    scopus 로고
    • Development of human protein reference database as an initial platform for approaching systems biology in humans
    • Peri, S. et al., Development of human protein reference database as an initial platform for approaching systems biology in humans, Genome Res., 13:2363-2371, 2003.
    • (2003) Genome Res. , vol.13 , pp. 2363-2371
    • Peri, S.1
  • 409
    • 85051803579 scopus 로고    scopus 로고
    • Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting
    • Pollard, D.A. et al., Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting, PLoS Genet., 2:e173, 2006.
    • (2006) PLoS Genet. , vol.2 , pp. e173
    • Pollard, D.A.1
  • 410
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • Posada, D. and K.A. Crandall, The effect of recombination on the accuracy of phylogeny estimation, J. Mol. Evol., 54:396-402, 2002.
    • (2002) J. Mol. Evol. , vol.54 , pp. 396-402
    • Posada, D.1    Crandall, K.A.2
  • 412
    • 4444294164 scopus 로고    scopus 로고
    • Improving false discovery rate estimation
    • Pounds, S. and C. Cheng, Improving false discovery rate estimation, Bioinformatics, 20:1737-1745, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1737-1745
    • Pounds, S.1    Cheng, C.2
  • 413
    • 0038156106 scopus 로고    scopus 로고
    • Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values
    • Pounds, S. and S. Morris, Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values, Bioinformatics, 19:1236-1242, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1236-1242
    • Pounds, S.1    Morris, S.2
  • 414
    • 0009093765 scopus 로고
    • Bayesian interpretation of standard inference statements
    • Pratt, J.W., Bayesian interpretation of standard inference statements, J. Roy. Stat. Soc. B, 27:169-203, 1965.
    • (1965) J. Roy. Stat. Soc. B , vol.27 , pp. 169-203
    • Pratt, J.W.1
  • 415
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genomewide association studies
    • Price, A.L. et al., Principal components analysis corrects for stratification in genomewide association studies, Nat. Genet., 38:904-909, 2006.
    • (2006) Nat. Genet. , vol.38 , pp. 904-909
    • Price, A.L.1
  • 416
    • 0033926805 scopus 로고    scopus 로고
    • Association mapping in structured populations
    • Pritchard, J.K. et al., Association mapping in structured populations, Am. J. Hum. Genet., 67:170-181, 2000.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 170-181
    • Pritchard, J.K.1
  • 417
    • 58149156287 scopus 로고    scopus 로고
    • Variants in MTNR1B influence fasting glucose levels
    • Prokopenko, I. et al., Variants in MTNR1B influence fasting glucose levels, Nat. Genet., 41:77-81, 2008.
    • (2008) Nat. Genet. , vol.41 , pp. 77-81
    • Prokopenko, I.1
  • 418
    • 0034887388 scopus 로고    scopus 로고
    • The significance of not finding a gene
    • Province, M.A., The significance of not finding a gene, Am. J. Hum. Genet., 69:660-663, 2001.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 660-663
    • Province, M.A.1
  • 419
    • 12244274952 scopus 로고    scopus 로고
    • A meta-analysis of genome-wide linkage scans for hypertension:the National Heart, Lung and Blood Institute Family Blood Pressure Program
    • Province, M.A. et al., A meta-analysis of genome-wide linkage scans for hypertension:the National Heart, Lung and Blood Institute Family Blood Pressure Program, Biometrika, 16:144-147, 2003.
    • (2003) Biometrika , vol.16 , pp. 144-147
    • Province, M.A.1
  • 420
    • 0347364732 scopus 로고    scopus 로고
    • Selection strategies for linkage studies using twins
    • Putter, H., J. Lebrec, and J.C. van Houwelingen, Selection strategies for linkage studies using twins, Twin Res., 6:377-382, 2003.
    • (2003) Twin Res. , vol.6 , pp. 377-382
    • Putter, H.1    Lebrec, J.2    van Houwelingen, J.C.3
  • 422
    • 84863304598 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0
    • R Development Core Team, R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, 2005, URL http://www.R-project.org, ISBN 3-900051-07-0.
    • (2005) R: A Language and Environment for Statistical Computing
  • 423
    • 0037131389 scopus 로고    scopus 로고
    • "stemness": Transcriptional profiling of embryonic and adult stem cells
    • Ramalho-Santos, M. et al., "stemness": Transcriptional profiling of embryonic and adult stem cells, Science, 298:587-600, 2002.
    • (2002) Science , vol.298 , pp. 587-600
    • Ramalho-Santos, M.1
  • 424
    • 53149135477 scopus 로고    scopus 로고
    • Key issues in conducting a meta-analysis of gene expression microarray datasets
    • Ramasamy, A. et al., Key issues in conducting a meta-analysis of gene expression microarray datasets, PLoS Med., 5:e184, 2008.
    • (2008) PLoS Med. , vol.5 , pp. e184
    • Ramasamy, A.1
  • 425
    • 0031907395 scopus 로고    scopus 로고
    • CAT scans, PET scans, and genomic scans
    • Rao, D.C., CAT scans, PET scans, and genomic scans, Genet. Epidemiol., 15:1-18, 1998.
    • (1998) Genet. Epidemiol. , vol.15 , pp. 1-18
    • Rao, D.C.1
  • 426
    • 0035235186 scopus 로고    scopus 로고
    • False positives and false negatives in genome scans
    • Rao, D.C. and C. Gu, False positives and false negatives in genome scans, Adv. Genet., 42:487-498, 2001.
    • (2001) Adv. Genet. , vol.42 , pp. 487-498
    • Rao, D.C.1    Gu, C.2
  • 428
    • 0037433040 scopus 로고    scopus 로고
    • Identifying differentially expressed genes using false discovery rate controlling procedures
    • Reiner, A., D. Yekutieli, and Y. Benjamini, Identifying differentially expressed genes using false discovery rate controlling procedures, Bioinformatics, 19:368-375, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 368-375
    • Reiner, A.1    Yekutieli, D.2    Benjamini, Y.3
  • 429
    • 0034704248 scopus 로고    scopus 로고
    • Genome-wide location and function of DNA binding proteins
    • Ren, B. et al., Genome-wide location and function of DNA binding proteins, Science, 290:2306-2309, 2000.
    • (2000) Science , vol.290 , pp. 2306-2309
    • Ren, B.1
  • 430
    • 0036682376 scopus 로고    scopus 로고
    • Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer
    • Rhodes, D.R. et al., Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer, Cancer Res., 62:4427-4433, 2002.
    • (2002) Cancer Res. , vol.62 , pp. 4427-4433
    • Rhodes, D.R.1
  • 431
    • 20044392672 scopus 로고    scopus 로고
    • Mining for regulatory programs in the cancer transcriptome
    • Rhodes, D.R. et al., Mining for regulatory programs in the cancer transcriptome, Nat. Genet., 37:579-583, 2005a.
    • (2005) Nat. Genet. , vol.37 , pp. 579-583
    • Rhodes, D.R.1
  • 432
    • 23444452564 scopus 로고    scopus 로고
    • Probabilistic model of the human protein-protein interaction network
    • Rhodes, D.R. et al., Probabilistic model of the human protein-protein interaction network, Nat. Biotechnol., 23:951-959, 2005b.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 951-959
    • Rhodes, D.R.1
  • 433
    • 3042694117 scopus 로고    scopus 로고
    • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    • Rhodes, D.R. et al., Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression, Proc. Natl. Acad. Sci. USA, 101:9309-9314, 2004a.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9309-9314
    • Rhodes, D.R.1
  • 434
    • 1642377561 scopus 로고    scopus 로고
    • ONCOMINE: a cancer microarray database and integrated datamining platform
    • Rhodes, D.R. et al., ONCOMINE: a cancer microarray database and integrated datamining platform, Neoplasia, 6:1-6, 2004b.
    • (2004) Neoplasia , vol.6 , pp. 1-6
    • Rhodes, D.R.1
  • 435
    • 0031581778 scopus 로고    scopus 로고
    • The role of meta-analysis in linkage studies of complex traits
    • Rice, J.P., The role of meta-analysis in linkage studies of complex traits, Am. J. Med. Genet., 74:112-114, 1997.
    • (1997) Am. J. Med. Genet. , vol.74 , pp. 112-114
    • Rice, J.P.1
  • 436
    • 0025008320 scopus 로고
    • A consensus combined p-value test and the family-wide significance of component tests
    • Rice, W.R., A consensus combined p-value test and the family-wide significance of component tests, Biometrics, 46:303-308, 1990.
    • (1990) Biometrics , vol.46 , pp. 303-308
    • Rice, W.R.1
  • 437
  • 438
    • 0027317883 scopus 로고
    • Conditional independence models for epidemiological studies with covariate measurement error
    • Richardson, S. and W.R. Gilks, Conditional independence models for epidemiological studies with covariate measurement error, Stat. Med., 12:1703-1722, 1993.
    • (1993) Stat. Med. , vol.12 , pp. 1703-1722
    • Richardson, S.1    Gilks, W.R.2
  • 439
    • 0033952185 scopus 로고    scopus 로고
    • Hybridization, introgression, and linkage evolution
    • Rieseberg, L.H., S.J. Baird, and K.A. Gardner, Hybridization, introgression, and linkage evolution, Plant Mol. Biol., 42:205-224, 2000.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 205-224
    • Rieseberg, L.H.1    Baird, S.J.2    Gardner, K.A.3
  • 441
    • 0025008677 scopus 로고
    • Linkage strategies for genetically complex traits. II. The power of affected relative pairs
    • Risch, N., Linkage strategies for genetically complex traits. II. The power of affected relative pairs, Am. J. Hum. Genet., 46:229-241, 1990.
    • (1990) Am. J. Hum. Genet. , vol.46 , pp. 229-241
    • Risch, N.1
  • 442
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch, N. and K. Merikangas, The future of genetic studies of complex human diseases, Science, 273:1516-1517, 1996.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 443
    • 0034603061 scopus 로고    scopus 로고
    • Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles
    • Roberts, C.J. et al., Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles, Science, 287:873-880, 2000.
    • (2000) Science , vol.287 , pp. 873-880
    • Roberts, C.J.1
  • 444
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas, A. et al., Genome-scale approaches to resolving incongruence in molecular phylogenies, Nature, 425:798-804, 2003.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1
  • 445
    • 0036515730 scopus 로고    scopus 로고
    • The probability of topological concordance of gene trees and species tree
    • Rosenberg, N., The probability of topological concordance of gene trees and species tree, Theor. Popul. Biol., 61:225-247, 2002.
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 225-247
    • Rosenberg, N.1
  • 446
    • 33750369796 scopus 로고    scopus 로고
    • Gene genealogies
    • Fox, C.W. and J.B. Wolf, eds., Oxford: Oxford University Press
    • Rosenberg, N.A., Gene genealogies, in Fox, C.W. and J.B. Wolf, eds., Evolutionary Genetics: Concepts and Case Studies, pp. 55-67, Oxford: Oxford University Press, 2005.
    • (2005) Evolutionary Genetics: Concepts and Case Studies , pp. 55-67
    • Rosenberg, N.A.1
  • 447
    • 33746341926 scopus 로고
    • The "file drawer problem" and tolerance for null results
    • Rosenthal, R., The "file drawer problem" and tolerance for null results, Psychol. Bull., 86:638-641, 1979.
    • (1979) Psychol. Bull. , vol.86 , pp. 638-641
    • Rosenthal, R.1
  • 449
    • 0000308754 scopus 로고
    • On a heuristic method of test construction and its use in multivariate analysis
    • Roy, S.N., On a heuristic method of test construction and its use in multivariate analysis, Ann. Math. Stat., 24:220-238, 1953.
    • (1953) Ann. Math. Stat. , vol.24 , pp. 220-238
    • Roy, S.N.1
  • 450
    • 0031049003 scopus 로고    scopus 로고
    • Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets
    • Ruvolo, M., Molecular phylogeny of the hominoids: Inferences from multiple independent DNA sequence data sets, Mol. Biol. Evol., 14:248-265, 1997.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 248-265
    • Ruvolo, M.1
  • 451
    • 2942587072 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide studies of psoriasis susceptibility reveals linkage to chromosomes 6p21 and 4q28-q31 in Caucasian and Chinese Hans population
    • Sagoo, G.S. et al., Meta-analysis of genome-wide studies of psoriasis susceptibility reveals linkage to chromosomes 6p21 and 4q28-q31 in Caucasian and Chinese Hans population, J. Invest. Dermatol., 122:1401-1405, 2004.
    • (2004) J. Invest. Dermatol. , vol.122 , pp. 1401-1405
    • Sagoo, G.S.1
  • 452
    • 0242500972 scopus 로고    scopus 로고
    • Construction of reliable protein-protein interaction networks with a new interaction generality measure
    • Saito, R., H. Suzuki, and Y. Hayashizaki, Construction of reliable protein-protein interaction networks with a new interaction generality measure, Bioinformatics, 19:756-763, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 756-763
    • Saito, R.1    Suzuki, H.2    Hayashizaki, Y.3
  • 453
    • 0031466983 scopus 로고    scopus 로고
    • From genotypes to genes: doubling the sample size
    • Sasieni, P.D., From genotypes to genes: doubling the sample size, Biometrics, 53:1253-1261, 1997.
    • (1997) Biometrics , vol.53 , pp. 1253-1261
    • Sasieni, P.D.1
  • 454
    • 0030966815 scopus 로고
    • Empirical genomewide significance levels established by whole genome simulations
    • Sawcer, S. et al., Empirical genomewide significance levels established by whole genome simulations, Genet. Epidemiol., 14:223-229, 1990.
    • (1990) Genet. Epidemiol. , vol.14 , pp. 223-229
    • Sawcer, S.1
  • 455
    • 0001273390 scopus 로고
    • The association of size differences with seed coat pattern and pigmentation in Phaseolus vulgaris
    • Sax, K., The association of size differences with seed coat pattern and pigmentation in Phaseolus vulgaris, Genetics, 8:552-560, 1923.
    • (1923) Genetics , vol.8 , pp. 552-560
    • Sax, K.1
  • 457
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt, E. et al., Genetics of gene expression surveyed in maize, mouse and man, Nature, 422:297-302, 2003.
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.1
  • 458
    • 45149108420 scopus 로고    scopus 로고
    • Mapping the genetic architecture of gene expression in human liver
    • Schadt, E.E. et al., Mapping the genetic architecture of gene expression in human liver, PLoS Biol., 6:e107, 2008.
    • (2008) PLoS Biol. , vol.6 , pp. e107
    • Schadt, E.E.1
  • 459
    • 0028938215 scopus 로고
    • Frequency of generalized transducing phages in natural isolates of the Salmonella typhimurium complex
    • Schicklmaier, P. and H. Schmieger, Frequency of generalized transducing phages in natural isolates of the Salmonella typhimurium complex, Appl. Environ. Microbiol., 61:1637-1640, 1995.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1637-1640
    • Schicklmaier, P.1    Schmieger, H.2
  • 460
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • Schwikowski, B., P. Uetz, and S. Fields, A network of protein-protein interactions in yeast, Nat. Biotechnol., 18:1257-1261, 2000.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 1257-1261
    • Schwikowski, B.1    Uetz, P.2    Fields, S.3
  • 461
    • 6944244084 scopus 로고    scopus 로고
    • A module map showing conditional activity of expression modules in cancer
    • Segal, E. et al., A module map showing conditional activity of expression modules in cancer, Nat. Genet., 36:1090-1098, 2004.
    • (2004) Nat. Genet. , vol.36 , pp. 1090-1098
    • Segal, E.1
  • 462
    • 0038341184 scopus 로고    scopus 로고
    • Genome scan meta-analysis of schizophrenia and bipolar disorder, Part III: Bipolar disorder
    • Segurado, R. et al., Genome scan meta-analysis of schizophrenia and bipolar disorder, Part III: Bipolar disorder, Am. J. Hum. Genet., 73:49-62, 2003.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 49-62
    • Segurado, R.1
  • 463
    • 84907319426 scopus 로고
    • Asymptotic properties of maximum likelihood estimators and likelihood ratio tests under nonstandard conditions
    • Self, S.G. and K.Y. Liang, Asymptotic properties of maximum likelihood estimators and likelihood ratio tests under nonstandard conditions, J. Am. Stat. Assoc., 82:605-610, 1987.
    • (1987) J. Am. Stat. Assoc. , vol.82 , pp. 605-610
    • Self, S.G.1    Liang, K.Y.2
  • 464
    • 0034987802 scopus 로고    scopus 로고
    • Equivalence between Haseman-Elston and Variance-Components linkage analyses for sib-pairs
    • Sham, P.C. and S. Purcell, Equivalence between Haseman-Elston and Variance-Components linkage analyses for sib-pairs, Am. J. Hum. Genet., 68:1527-1532, 2001.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 1527-1532
    • Sham, P.C.1    Purcell, S.2
  • 465
    • 0036077215 scopus 로고    scopus 로고
    • Powerful regression based quantitative linkage analysis of general pedigrees
    • Sham, P.C. et al., Powerful regression based quantitative linkage analysis of general pedigrees, Am. J. Hum. Genet., 71:238-253, 2002.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 238-253
    • Sham, P.C.1
  • 466
    • 20044395334 scopus 로고    scopus 로고
    • Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data
    • Shen, R., D. Ghosh, and A.M. Chinnaiyan, Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data, BMC Genomics, 5:94, 2004.
    • (2004) BMC Genomics , vol.5 , pp. 94
    • Shen, R.1    Ghosh, D.2    Chinnaiyan, A.M.3
  • 467
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks
    • Shmulevich, I. et al., Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks, Bioinformatics, 18:261-274, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 261-274
    • Shmulevich, I.1
  • 468
    • 84947402121 scopus 로고
    • Rectangular confidence regions for the means of multivariate normal distributions
    • Šidák, Z., Rectangular confidence regions for the means of multivariate normal distributions, J. Am. Stat. Assoc., 62:626-633, 1967.
    • (1967) J. Am. Stat. Assoc. , vol.62 , pp. 626-633
    • Šidák, Z.1
  • 469
    • 0001745298 scopus 로고
    • The interpretation of interaction in contingency tables
    • Simpson, E.H., The interpretation of interaction in contingency tables, J. Roy. Stat. Soc. B, 13:238-241, 1951.
    • (1951) J. Roy. Stat. Soc. B , vol.13 , pp. 238-241
    • Simpson, E.H.1
  • 470
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth, G.K., Linear models and empirical Bayes methods for assessing differential expression in microarray experiments, Stat. Appl. Genet. Mol. Biol., 3:Article 3, 2004.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 472
    • 0037478605 scopus 로고    scopus 로고
    • Repeated observation of breast tumor subtypes in independent gene expression data sets
    • Sørlie, T. et al., Repeated observation of breast tumor subtypes in independent gene expression data sets, Proc. Natl. Acad. Sci. USA, 100:8418-8423, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 8418-8423
    • Sørlie, T.1
  • 473
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman, P.T. et al., Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization, Mol. Biol. Cell, 9:3273-3297, 1998.
    • (1998) Mol. Biol. Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1
  • 474
    • 0036364831 scopus 로고    scopus 로고
    • Progress in predicting protein function from structure: Unique features of O-Glycosidases
    • Altman, R.B. et al., eds., River Edge, NJ:World Scientific
    • Stawiki, E.W. et al., Progress in predicting protein function from structure: Unique features of O-Glycosidases, in Altman, R.B. et al., eds., Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02), pp. 637-648, River Edge, NJ:World Scientific, 2002.
    • (2002) Proceedings of the Seventh Pacific Symposium on Biocomputing (PSB02) , pp. 637-648
    • Stawiki, E.W.1
  • 475
    • 23844519571 scopus 로고    scopus 로고
    • Comparison of the predictive accuracy of DNA array based multigene classifiers across cDNA arrays and Affymetrix GeneChips
    • Stec, J. et al., Comparison of the predictive accuracy of DNA array based multigene classifiers across cDNA arrays and Affymetrix GeneChips, J. Mol. Diagn., 7:357-367, 2005.
    • (2005) J. Mol. Diagn. , vol.7 , pp. 357-367
    • Stec, J.1
  • 477
    • 0035859525 scopus 로고    scopus 로고
    • Investigating and dealing with publication and other biases in meta-analysis
    • Sterne, J.A., M. Egger, and G.D. Smith, Investigating and dealing with publication and other biases in meta-analysis, BMJ, 323:101-105, 2001.
    • (2001) BMJ , vol.323 , pp. 101-105
    • Sterne, J.A.1    Egger, M.2    Smith, G.D.3
  • 478
    • 18844392338 scopus 로고    scopus 로고
    • Combining Affymetrix microarray results
    • Stevens, J.R. and R.W. Doerge, Combining Affymetrix microarray results, BMC Bioinformatics, 6:57, 2005.
    • (2005) BMC Bioinformatics , vol.6 , pp. 57
    • Stevens, J.R.1    Doerge, R.W.2
  • 479
    • 0025801999 scopus 로고
    • Exchange of chromosomal markers by natural transformation between the soil isolate, Pseudomonas stutzeri JM300, and the marine isolate
    • Stewart, G.J. and C.D. Sinigalliano, Exchange of chromosomal markers by natural transformation between the soil isolate, Pseudomonas stutzeri JM300, and the marine isolate, Pseudomonas stutzeri strain ZoBell., Antonie Van Leeuwenhoek, 59:19-25, 1991.
    • (1991) Pseudomonas stutzeri strain ZoBell., Antonie Van Leeuwenhoek , vol.59 , pp. 19-25
    • Stewart, G.J.1    Sinigalliano, C.D.2
  • 480
    • 0033761365 scopus 로고    scopus 로고
    • Genetic obesity unmasks nonlinear interactions between murine type 2 diabetes susceptibility loci
    • Stoehr, J. et al., Genetic obesity unmasks nonlinear interactions between murine type 2 diabetes susceptibility loci, Diabetes, 49:1946-1954, 2000.
    • (2000) Diabetes , vol.49 , pp. 1946-1954
    • Stoehr, J.1
  • 481
    • 0346729947 scopus 로고    scopus 로고
    • Identification of major quantitative trait loci controlling body weight variation in ob/ob mice
    • Stoehr, J.P. et al., Identification of major quantitative trait loci controlling body weight variation in ob/ob mice, Diabetes, 53:245-249, 2004.
    • (2004) Diabetes , vol.53 , pp. 245-249
    • Stoehr, J.P.1
  • 482
    • 0030811897 scopus 로고    scopus 로고
    • Extension of the Haseman-Elston method to multiple alleles and multiple loci: theory and practice for candidate genes
    • Stoesz, M.R. et al., Extension of the Haseman-Elston method to multiple alleles and multiple loci: theory and practice for candidate genes, Ann. Hum. Genet., 61:263-274, 1997.
    • (1997) Ann. Hum. Genet. , vol.61 , pp. 263-274
    • Stoesz, M.R.1
  • 483
    • 0041423883 scopus 로고    scopus 로고
    • SAM thresholding and false discovery rates for detecting differential gene expression in DNA microarrays
    • Parmigiani, G. et al., eds., New York: Springer-Verlag
    • Storey, J. and R. Tibshirani, SAM thresholding and false discovery rates for detecting differential gene expression in DNA microarrays, in Parmigiani, G. et al., eds., The Analysis of Gene Expression Data: Methods and Software, pp. 272-290, New York: Springer-Verlag, 2003a.
    • (2003) The Analysis of Gene Expression Data: Methods and Software , pp. 272-290
    • Storey, J.1    Tibshirani, R.2
  • 484
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J.D., A direct approach to false discovery rates, J. Roy. Stat. Soc. B, 64:479-498, 2002.
    • (2002) J. Roy. Stat. Soc. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 485
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome-wide experiments
    • Storey, J.D. and R. Tibshirani, Statistical significance for genome-wide experiments, Proc. Natl. Acad. Sci. USA, 100:9440-9445, 2003b.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 487
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger, B.E. et al., Relative impact of nucleotide and copy number variation on gene expression phenotypes, Science, 315:848-853, 2007.
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1
  • 488
    • 0033296299 scopus 로고    scopus 로고
    • Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones
    • Sturm, J.F., Using SeDuMi 1.02, a MATLAB toolbox for optimization over symmetric cones, Optim. Method. Softw., 11-12:625-653, 1999.
    • (1999) Optim. Method. Softw. , vol.11-12 , pp. 625-653
    • Sturm, J.F.1
  • 489
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A. et al., Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles, Proc. Natl. Acad. Sci. USA, 102:15545-15550, 2005.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 490
    • 1542604092 scopus 로고    scopus 로고
    • Genomic approaches in dissecting complex biological pathways
    • Sun, N. and H. Zhao, Genomic approaches in dissecting complex biological pathways, Pharmacogenomics, 5:163-179, 2004.
    • (2004) Pharmacogenomics , vol.5 , pp. 163-179
    • Sun, N.1    Zhao, H.2
  • 492
    • 11244258643 scopus 로고    scopus 로고
    • An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis
    • Sweet-Cordero, A. et al., An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis, Nat. Genet., 37:48-55, 2005.
    • (2005) Nat. Genet. , vol.37 , pp. 48-55
    • Sweet-Cordero, A.1
  • 493
    • 32144438168 scopus 로고    scopus 로고
    • Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci
    • Syring, J. et al., Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci, Am. J.Bot., 92:2086-2100, 2005.
    • (2005) Am. J.Bot. , vol.92 , pp. 2086-2100
    • Syring, J.1
  • 494
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F., Evolutionary relationship of DNA sequences in finite populations, Genetics, 105:437-460, 1983.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 495
    • 0024713112 scopus 로고
    • Gene genealogy in three related populations: Consistency probability between gene and population trees
    • Takahata, N., Gene genealogy in three related populations: Consistency probability between gene and population trees, Genetics, 122:957-966, 1989.
    • (1989) Genetics , vol.122 , pp. 957-966
    • Takahata, N.1
  • 496
    • 0030895289 scopus 로고    scopus 로고
    • Evolution of the primate lineage leading to modern humans:phylogenetic and demographic inferences from DNA sequences
    • Takahata, N. and Y. Satta, Evolution of the primate lineage leading to modern humans:phylogenetic and demographic inferences from DNA sequences, Proc. Natl. Acad. Sci. USA, 94:4811-4815, 1997.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 4811-4815
    • Takahata, N.1    Satta, Y.2
  • 497
    • 0029415835 scopus 로고
    • Divergence time and population size in the lineage leading to modern humans
    • Takahata, N., Y. Satta, and J. Klein, Divergence time and population size in the lineage leading to modern humans, Theor. Popul. Biol., 48:198-221, 1995.
    • (1995) Theor. Popul. Biol. , vol.48 , pp. 198-221
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 498
    • 0141905890 scopus 로고    scopus 로고
    • Evaluation of gene expression measurements from commercial microarray platforms
    • Tan, P.K. et al., Evaluation of gene expression measurements from commercial microarray platforms, Nucleic Acids Res., 31:5676-5684, 2003.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5676-5684
    • Tan, P.K.1
  • 500
    • 0037687416 scopus 로고    scopus 로고
    • Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling
    • Tegnér, J. et al., Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling, Proc. Natl. Acad. Sci. USA, 100:5944-5949, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 5944-5949
    • Tegnér, J.1
  • 505
    • 34250380386 scopus 로고    scopus 로고
    • Confounding factors in HGT detection: Statistical error, coalescent effects, and multiple solutions
    • Than, C. et al., Confounding factors in HGT detection: Statistical error, coalescent effects, and multiple solutions, J. Comput. Biol., 14:517-535, 2007.
    • (2007) J. Comput. Biol. , vol.14 , pp. 517-535
    • Than, C.1
  • 506
    • 51349098340 scopus 로고    scopus 로고
    • PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
    • Than, C., D. Ruths, and L. Nakhleh, PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships, BMC Bioinformatics, 9:322, 2008b.
    • (2008) BMC Bioinformatics , vol.9 , pp. 322
    • Than, C.1    Ruths, D.2    Nakhleh, L.3
  • 507
    • 46249132832 scopus 로고    scopus 로고
    • Efficient inference of bacterial strain trees from genome-scale multilocus data
    • Than, C. et al., Efficient inference of bacterial strain trees from genome-scale multilocus data, Bioinformatics, 24:i123-i131, 2008c.
    • (2008) Bioinformatics , vol.24 , pp. i123-i131
    • Than, C.1
  • 508
    • 17744398193 scopus 로고    scopus 로고
    • A meta-analysis of genomic screens in multiple sclerosis
    • The Transatlantic Multiple Sclerosis Genetics Cooperative, A meta-analysis of genomic screens in multiple sclerosis, Mult. Scler., 7:3-11, 2001.
    • (2001) Mult. Scler. , vol.7 , pp. 3-11
  • 510
    • 0037059461 scopus 로고    scopus 로고
    • A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
    • Tong, A.H.Y. et al., A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules, Science, 295:321-324, 2002.
    • (2002) Science , vol.295 , pp. 321-324
    • Tong, A.H.Y.1
  • 511
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction
    • Troyanskaya, O.G. et al., A Bayesian framework for combining heterogeneous data sources for gene function prediction in Saccharomyces cerevisiae, Proc. Natl. Acad. Sci. USA, 100:8348-8353, 2003.
    • (2003) Saccharomyces cerevisiae, Proc. Natl. Acad. Sci. USA , vol.100 , pp. 8348-8353
    • Troyanskaya, O.G.1
  • 514
    • 0347634454 scopus 로고    scopus 로고
    • Defining the epithelial stem cell niche in skin
    • Tumbar, T. et al., Defining the epithelial stem cell niche in skin, Science, 303:359-363, 2004.
    • (2004) Science , vol.303 , pp. 359-363
    • Tumbar, T.1
  • 515
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V.G., R. Tibshirani, and G. Chu, Significance analysis of microarrays applied to the ionizing radiation response, Proc. Natl. Acad. Sci. USA, 98:5116-5121, 2001.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 516
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in saccharomyces cerevisiae
    • Uetz, P. et al., A comprehensive analysis of protein-protein interactions in saccharomyces cerevisiae, Nature, 403:623-627, 2000.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 517
    • 14644413619 scopus 로고    scopus 로고
    • Augmentation procedures for control of the generalized family-wise error rate and tail probabilities for the proportion of false positives
    • van der Laan, M.J., S. Dudoit, and K.S. Pollard, Augmentation procedures for control of the generalized family-wise error rate and tail probabilities for the proportion of false positives, Stat. Appl. Genet. Mol. Biol., 3:Article 15, 2004a.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • van der Laan, M.J.1    Dudoit, S.2    Pollard, K.S.3
  • 518
    • 14644392927 scopus 로고    scopus 로고
    • Multiple testing. Part II. Step-down procedures for control of the family-wise error rate
    • van der Laan, M.J., S. Dudoit, and K.S. Pollard, Multiple testing. Part II. Step-down procedures for control of the family-wise error rate, Stat. Appl. Genet. Mol. Biol., 3:Article 14, 2004b.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • van der Laan, M.J.1    Dudoit, S.2    Pollard, K.S.3
  • 519
    • 11144354272 scopus 로고    scopus 로고
    • Inflammatory bowel disease susceptibility loci defined by genome scan meta-analysis of 1952 affected relative pairs
    • van Heel, D.A. et al., Inflammatory bowel disease susceptibility loci defined by genome scan meta-analysis of 1952 affected relative pairs, Hum. Mol. Genet., 13:763-770, 2004.
    • (2004) Hum. Mol. Genet. , vol.13 , pp. 763-770
    • van Heel, D.A.1
  • 520
    • 0037186429 scopus 로고    scopus 로고
    • Advanced methods in metaanalysis:multivariate approach and meta-regression
    • van Houwelingen, J.C., L.R. Arends, and T. Stijnen, Advanced methods in metaanalysis:multivariate approach and meta-regression, Stat. Med., 21:589-624, 2002.
    • (2002) Stat. Med. , vol.21 , pp. 589-624
    • van Houwelingen, J.C.1    Arends, L.R.2    Stijnen, T.3
  • 521
    • 18644382388 scopus 로고    scopus 로고
    • The polycomb group protein EZH2 is involved in progression of prostate cancer
    • Varambally, S. et al., The polycomb group protein EZH2 is involved in progression of prostate cancer, Nature, 419:624-629, 2002.
    • (2002) Nature , vol.419 , pp. 624-629
    • Varambally, S.1
  • 522
    • 0038699587 scopus 로고    scopus 로고
    • Global protein function prediction from protein-protein interaction networks
    • Vazquez, A. et al., Global protein function prediction from protein-protein interaction networks, Nat. Biotechnol., 21:697-700, 2003.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 697-700
    • Vazquez, A.1
  • 523
    • 0028789793 scopus 로고
    • Serial analysis of gene expression
    • Velculescu, V.E. et al., Serial analysis of gene expression, Science, 270:484-487, 1995.
    • (1995) Science , vol.270 , pp. 484-487
    • Velculescu, V.E.1
  • 525
    • 8844250116 scopus 로고    scopus 로고
    • Molecular signatures of proliferation and quiescence in hematopoietic stem cells
    • Venezia, T.A. et al., Molecular signatures of proliferation and quiescence in hematopoietic stem cells, PLoS Biol., 2:e301, 2004.
    • (2004) PLoS Biol. , vol.2 , pp. e301
    • Venezia, T.A.1
  • 526
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J.C. et al., The sequence of the human genome, Science, 291:1304-1351, 2001.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1
  • 527
    • 10244224128 scopus 로고    scopus 로고
    • Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies
    • Wang, J. et al., Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies, Bioinformatics, 20:3166-3178, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 3166-3178
    • Wang, J.1
  • 528
    • 36249029788 scopus 로고    scopus 로고
    • Pathway-based approaches for analysis of genomewide association studies
    • Wang, K., M. Li, and M. Bucan, Pathway-based approaches for analysis of genomewide association studies, Am. J. Hum. Genet., 81:1278-1283, 2007.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 1278-1283
    • Wang, K.1    Li, M.2    Bucan, M.3
  • 529
    • 0037168519 scopus 로고    scopus 로고
    • A systematic approach to reconstructing transcription networks
    • Wang, W. et al., A systematic approach to reconstructing transcription networks in Saccharomyces cerevisiae, Proc. Natl. Acad. Sci. USA, 99:16893-16898, 2002.
    • (2002) Saccharomyces cerevisiae, Proc. Natl. Acad. Sci. USA , vol.99 , pp. 16893-16898
    • Wang, W.1
  • 531
    • 0000576729 scopus 로고
    • The significance of the difference between two means when the population variances are unequal
    • Welch, B.L., The significance of the difference between two means when the population variances are unequal, Biometrika, 29:350-362, 1938.
    • (1938) Biometrika , vol.29 , pp. 350-362
    • Welch, B.L.1
  • 532
    • 0037168538 scopus 로고    scopus 로고
    • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    • Welch, R.A., Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli, Proc. Natl. Acad. Sci. USA, 99:17020-17024, 2002.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 17020-17024
    • Welch, R.A.1
  • 534
    • 0035985177 scopus 로고    scopus 로고
    • Identification of genes periodically expressed in the human cell cycle and their expression in tumors
    • Whitfield, M.L. et al., Identification of genes periodically expressed in the human cell cycle and their expression in tumors, Mol. Biol. Cell, 13:1977-2000, 2002.
    • (2002) Mol. Biol. Cell , vol.13 , pp. 1977-2000
    • Whitfield, M.L.1
  • 535
    • 0000112915 scopus 로고
    • A statisical consideration in psychological research
    • Wilkinson, B., A statisical consideration in psychological research, Psychol. Bull., 48:156-158, 1951.
    • (1951) Psychol. Bull. , vol.48 , pp. 156-158
    • Wilkinson, B.1
  • 536
    • 84970976503 scopus 로고    scopus 로고
    • Integrated analysis of gene expression profiling studies - examples in breast cancer
    • Appel, R.D. and E. Feytmans, eds., Singapore: World Scientific
    • Wirapati, P., D.R. Goldstein, and M. Delorenzi, Integrated analysis of gene expression profiling studies - examples in breast cancer, in Appel, R.D. and E. Feytmans, eds., Bioinformatics: A Swiss Perspective, Singapore: World Scientific, 2009.
    • (2009) Bioinformatics: A Swiss Perspective
    • Wirapati, P.1    Goldstein, D.R.2    Delorenzi, M.3
  • 537
    • 58149330982 scopus 로고    scopus 로고
    • Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures
    • Wirapati, P. et al., Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures, Breast Cancer Res., 10:R65, 2008.
    • (2008) Breast Cancer Res. , vol.10 , pp. R65
    • Wirapati, P.1
  • 539
    • 0031458790 scopus 로고    scopus 로고
    • Genetic analysis with hierarchical models
    • Witte, J.S., Genetic analysis with hierarchical models, Genet. Epidemiol., 14:1137-1142, 1997.
    • (1997) Genet. Epidemiol. , vol.14 , pp. 1137-1142
    • Witte, J.S.1
  • 540
    • 0036135160 scopus 로고    scopus 로고
    • Natural genetic transformation of clinical isolates of Escherichia coli in urine and water
    • Woegerbauer, M. et al., Natural genetic transformation of clinical isolates of Escherichia coli in urine and water, Appl. Environ. Microbiol., 68:440-443, 2002.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 440-443
    • Woegerbauer, M.1
  • 541
    • 0035687554 scopus 로고    scopus 로고
    • Assessing gene significance from cDNA microarray expression data via mixed models
    • Wolfinger, R.D. et al., Assessing gene significance from cDNA microarray expression data via mixed models, J. Comput. Biol., 8:37-52, 2001.
    • (2001) J. Comput. Biol. , vol.8 , pp. 37-52
    • Wolfinger, R.D.1
  • 542
    • 0043192901 scopus 로고    scopus 로고
    • A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma
    • Wright, G. et al., A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma, Proc. Natl. Acad. Sci. USA, 100:10585-10587, 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10585-10587
    • Wright, G.1
  • 543
    • 0348143180 scopus 로고    scopus 로고
    • A random variance model for detection of differential gene expression in small microarray experiments
    • Wright, G.W. and R.M. Simon, A random variance model for detection of differential gene expression in small microarray experiments, Bioinformatics, 19:2448-2455, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 2448-2455
    • Wright, G.W.1    Simon, R.M.2
  • 545
    • 0026031181 scopus 로고
    • Inferences of species phylogeny in relation to segregation of ancient polymorphisms
    • Wu, C.I., Inferences of species phylogeny in relation to segregation of ancient polymorphisms, Genetics, 127:429-435, 1991.
    • (1991) Genetics , vol.127 , pp. 429-435
    • Wu, C.I.1
  • 546
    • 0036234398 scopus 로고    scopus 로고
    • A combined analysis of genomewide linkage scans for body mass index from the National Heart, Lung, and Blood Institute Family Blood Pressure Program
    • Wu, X. et al., A combined analysis of genomewide linkage scans for body mass index from the National Heart, Lung, and Blood Institute Family Blood Pressure Program, Am. J. Hum. Genet., 70:1247-1256, 2002.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 1247-1256
    • Wu, X.1
  • 547
    • 0036088133 scopus 로고    scopus 로고
    • DIP: The Database of Interacting Proteins. a research tool for studying cellular networks of protein interactions
    • Xenarios, I. et al., DIP: The Database of Interacting Proteins. a research tool for studying cellular networks of protein interactions, Nucleic Acids Res., 30:303-305, 2002.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 303-305
    • Xenarios, I.1
  • 548
    • 0033794945 scopus 로고    scopus 로고
    • A unified Haseman-Elston method for testing linkage with quantitative traits
    • Xu, X. et al., A unified Haseman-Elston method for testing linkage with quantitative traits, Am. J. Hum. Genet., 67:1025-1028, 2000.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 1025-1028
    • Xu, X.1
  • 549
    • 0035577862 scopus 로고    scopus 로고
    • Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays
    • Yan, P.S. et al., Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays, Cancer Res., 61:8375-8380, 2001.
    • (2001) Cancer Res. , vol.61 , pp. 8375-8380
    • Yan, P.S.1
  • 551
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
    • Yang, Y.H. et al., Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation, Nucleic Acids Res., 30:e15, 2002.
    • (2002) Nucleic Acids Res. , vol.30 , pp. e15
    • Yang, Y.H.1
  • 552
    • 13444269542 scopus 로고    scopus 로고
    • OntologyTraverser: an R package for GO analysis
    • Young, A. et al., OntologyTraverser: an R package for GO analysis, Bioinformatics, 21:275-276, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 275-276
    • Young, A.1
  • 553
    • 0042856391 scopus 로고    scopus 로고
    • Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
    • Yvert, G. et al., Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors, Nat. Genet., 35:57-64, 2003.
    • (2003) Nat. Genet. , vol.35 , pp. 57-64
    • Yvert, G.1
  • 554
    • 42349106044 scopus 로고    scopus 로고
    • Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes
    • Zeggini, E. et al., Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes, Nat. Genet., 40:638-645, 2008.
    • (2008) Nat. Genet. , vol.40 , pp. 638-645
    • Zeggini, E.1
  • 555
    • 33747851973 scopus 로고    scopus 로고
    • An empirical Bayes method for updating inferences in analysis of quantitative trait loci using information from related genome scans
    • Zhang, K. et al., An empirical Bayes method for updating inferences in analysis of quantitative trait loci using information from related genome scans, Genetics, 173:2283-2296, 2006.
    • (2006) Genetics , vol.173 , pp. 2283-2296
    • Zhang, K.1
  • 556
    • 0030762443 scopus 로고    scopus 로고
    • On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies
    • Zhang, L., On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies, J. Comput. Biol., 4:177-187, 1997.
    • (1997) J. Comput. Biol. , vol.4 , pp. 177-187
    • Zhang, L.1
  • 557
    • 0038729666 scopus 로고    scopus 로고
    • A model of molecular interactions on short oligonucleotide microarrays
    • Zhang, L., M.F. Miles, and K.D. Aldape, A model of molecular interactions on short oligonucleotide microarrays, Nat. Biotechnol., 21:818-821, 2003.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 818-821
    • Zhang, L.1    Miles, M.F.2    Aldape, K.D.3
  • 558
    • 0031879559 scopus 로고    scopus 로고
    • Mapping quantitative trait loci for milk production and health of dairy cattle in a large outbred pedigree
    • Zhang, Q. et al., Mapping quantitative trait loci for milk production and health of dairy cattle in a large outbred pedigree, Genetics, 149:1959-1973, 1998.
    • (1998) Genetics , vol.149 , pp. 1959-1973
    • Zhang, Q.1
  • 559
    • 0242290935 scopus 로고    scopus 로고
    • Reconstructing genetic networks in yeast
    • Zhang, Z. and M. Gerstein, Reconstructing genetic networks in yeast, Nat. Biotechnol., 21:1295-1297, 2003.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 1295-1297
    • Zhang, Z.1    Gerstein, M.2
  • 561
    • 85051817783 scopus 로고    scopus 로고
    • Genomic functional annotation using coevolution profiles of gene clusters
    • Zheng, Y., R.J. Roberts, and S. Kasif, Genomic functional annotation using coevolution profiles of gene clusters, Genome Biol., 3:1-9, 2003.
    • (2003) Genome Biol. , vol.3 , pp. 1-9
    • Zheng, Y.1    Roberts, R.J.2    Kasif, S.3
  • 562
    • 0036790999 scopus 로고    scopus 로고
    • Transitive functional annotation by shortest-path analysis of gene expression data
    • Zhou, X., M. Kao, and W. Wong, Transitive functional annotation by shortest-path analysis of gene expression data, Proc. Natl. Acad. Sci. USA, 99:12783-12788, 2002.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12783-12788
    • Zhou, X.1    Kao, M.2    Wong, W.3
  • 563
    • 84923861555 scopus 로고    scopus 로고
    • Combining genotypic and expression data in segregating populations
    • Zhu, J. et al., Combining genotypic and expression data in segregating populations, PLoS Comput. Biol., 3:e69, 2007.
    • (2007) PLoS Comput. Biol. , vol.3 , pp. e69
    • Zhu, J.1
  • 564
    • 24644511654 scopus 로고    scopus 로고
    • HEGESMA: genome search meta-analysis and heterogeneity testing
    • Zintzaras, E. and J.P. Ioannidis, HEGESMA: genome search meta-analysis and heterogeneity testing, Bioinformatics, 21:3672-3673, 2005a.
    • (2005) Bioinformatics , vol.21 , pp. 3672-3673
    • Zintzaras, E.1    Ioannidis, J.P.2
  • 565
    • 12744274510 scopus 로고    scopus 로고
    • Heterogeneity testing in meta-analysis of genome searches
    • Zintzaras, E. and J.P.A. Ioannidis, Heterogeneity testing in meta-analysis of genome searches, Genet. Epidemiol., 28:123-137, 2005b.
    • (2005) Genet. Epidemiol. , vol.28 , pp. 123-137
    • Zintzaras, E.1    Ioannidis, J.P.A.2
  • 566
    • 0034791426 scopus 로고    scopus 로고
    • A simple algorithm to infer gene duplication and speciation events on a gene tree
    • Zmasek, C.M. and S.R. Eddy, A simple algorithm to infer gene duplication and speciation events on a gene tree, Bioinformatics, 17:821-828, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 821-828
    • Zmasek, C.M.1    Eddy, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.