MIPS: Analysis and annotation of proteins from whole genomes

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Mewes, H W ^a,b   Amid, C ^a   Arnold, R ^a   Frishman, D ^b   Guldener U ^a   Mannhaupt, G ^b   Munsterkotter M ^a   Pagel, P ^a   Strack, N ^b   Stumpflen V ^a   Warfsmann, J ^a   Ruepp, A ^a  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

ACCESS TO INFORMATION; ALGORITHM; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; AUTOMATION; CLASSIFICATION; COMPUTER INTERFACE; EXPRESSED SEQUENCE TAG; GENETIC DATABASE; GENOME; GERMANY; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; MAMMAL; MUNICH INFORMATION CENTER FOR PROTEIN SEQUENCES; NEUROSPORA CRASSA; NONHUMAN; NUCLEIC ACID DATABASE; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN PROTEIN INTERACTION; RICE; SCIENTIFIC LITERATURE; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; DNA, COMPLEMENTARY; FUNGI; GENOME; HUMANS; INTERNET; MODELS, BIOLOGICAL; PROTEIN BINDING; PROTEOMICS; SEQUENCE HOMOLOGY;

ARABIDOPSIS; ARABIDOPSIS THALIANA; MAMMALIA; NEUROSPORA; NEUROSPORA CRASSA;

EID: 9144242935     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (17)

1. Schueller,C. and Fritz,A. (2002) An enhanced human-genome database. Genet. Eng., 22, 38.
2. Van Belle,D. and Andre,B. (2001) A genomic view of yeast membrane transporters. Curr. Opin. Cell Biol., 13, 389-398.
3. Matys,V., Fricke,E., Geffers,R., Gossling,E., Haubrock,M., Hehl,R., Hornischer,K., Karas,D., Kel,A.E., Kel-Margoulis,O.V. et al. (2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
4. Strack,N. and Mewes,H.W. (1999) SESAM: Seed Extraction Sequence Analysis Method. Giegerich, R. and Wingender, E. Proceedings of the German Conference on Bioinformatics GCB '99. Computer Science and Biology, Braunschweig, Bielefeld. 4-6-0099, pp. 59-65.
5. Mulder,N.J., Apweiler,R., Attwood,T.K., Bairoch,A., Barrell,D., Bateman,A., Binns,D., Biswas,M., Bradley,P., Bork,P. et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res., 31, 315-318.
6. Souciet,J., Aigle,M., Artiguenave,F., Blandin,G., Bolotin-Fukuhara,M., Bon,B., Brottier,P., Casaregola,S., de Montigny,J., Dujon,B. et al. (2000) Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies. FEBS Lett., 487, 3-12.
7. Bon,E., Casaregola,S., Blandin,G., Llorente,B., Neuveglise,C., Munsterkotter,M., Guldener,U., Mewes,H.W., Van Helden,J., Dujon,B. et al. (2003) Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns. Nucleic Acids Res., 31, 1121-1135.
8. Schulte,U., Becker,I., Mewes,H.W. and Mannhaupt,G. (2002) Large scale analysis of sequences from Neurospora crassa. J. Biotechnol., 94, 3-13.
9. Galagan,J.E., Calvo,S.E., Borkovich,K.A., Selker,E.U., Read,N.D., Jaffe,D., FitzHugh,W., Ma,L.J., Smirnov,S., Purcell,S. et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature, 422, 859-868.
10. Wiemann,S., Weil,B., Wellenreuther,R., Gassenhuber,H., Glassl,S., Ansorge,W., Bocher,M., Blöcker,H., Bauersachs,S., Blum,H. et al. (2001) Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. Genome Res., 11, 422-435.
11. Olson,M.V. and Varki,A. (2003) Sequencing the chimpanzee genome: insights into human evolution and disease. Nature Rev. Genet., 4, 20-28.
12. Vazquez,A., Flammini,A., Maritan,A. and Vespignani,A. (2003) Global protein function prediction from protein-protein interaction networks. Nat. Biotechnol., 21, 697-700.
13. Pearson,W.R. (2000) Flexible sequence similarity searching with the FASTA3 program package. Methods Mol. Biol., 132, 185-219.
14. Enright,A.J., Van Dongen,S. and Ouzounis,C.A. (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30, 1575-1584.
15. Lee,C., Grasso,C. and Sharlow,M.F. (2002) Multiple sequence alignment using partial order graphs. Bioinformatics, 18, 452-464.
16. Frishman,D., Albermann,K., Hani,J., Heumann,K., Metanomski,A., Zollner,A. and Mewes,H.W. (2001) Functional and structural genomics using PEDANT. Bioinformatics, 17, 144-157.
17. Westbrook,J., Feng,Z., Jain,S., Bhat,T.N., Thanki,N., Ravichandran,V., Gilliland,G.L., Bluhm,W., Weissig,H., Greer,D.S. et al. (2002) The Protein Data Bank: unifying the archive. Nucleic Acids Res., 30, 245-248.