-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh, A.A., Eisen, M.B., Davis, R.E., Ma, C.A., Lossos, I.S., Rosenwald, A., Boldrick, J.C., Sabet, H., Tran, T., Yu, X., Powell, J.I., Yang, L., Marti, G.E., Moore, T., Hudson, J., Lu, L., Lewis, D.B., Tibshirani, R., Sherlock, G., Chan, W.C., Greiner, T.C., Weissenberger, D.D., Armitage, J.O., Levy, R., Grever, M.R., Byrd, J.C., Botstein, D., Brown, P.O. and Staudt, L.M. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature, 403, 503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.A.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson, J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weissenberger, D.D.22
Armitage, J.O.23
Levy, R.24
Grever, M.R.25
Byrd, J.C.26
Botstein, D.27
Brown, P.O.28
Staudt, L.M.29
more..
-
2
-
-
0032728081
-
Clustering gene expression patterns
-
Ben-Dor, A., Shamir, R. and Yakhini, Z. (1999) Clustering gene expression patterns. J. Comput. Biol., 6, 281-297.
-
(1999)
J. Comput. Biol.
, vol.6
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
4
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner, M., Meltzer, P., Chen, Y., Jiang, Y., Seftor, E., Hendrix, M., Radmacher, M., Simon, R., Yakhini, Z., Ben-Dor, A., Sampas, N., Dougherty, E., Wang, E., Marincola, F., Gooden, C., Lueders, J., Glatfelter, A., Pollock, P., Carpten, J., Gillanders, E., Leja, D., Dietrich, K., Beaudry, C., Berens, M., Alberts, D., Sondak, V., Hayward, N. and Trent, J. (2000) Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature, 406, 536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
Sampas, N.11
Dougherty, E.12
Wang, E.13
Marincola, F.14
Gooden, C.15
Lueders, J.16
Glatfelter, A.17
Pollock, P.18
Carpten, J.19
Gillanders, E.20
Leja, D.21
Dietrich, K.22
Beaudry, C.23
Berens, M.24
Alberts, D.25
Sondak, V.26
Hayward, N.27
Trent, J.28
more..
-
5
-
-
0034525814
-
DRAGON: Database referencing of array genes online
-
Bouton, C.M. and Pevsner, J. (2000) DRAGON: database referencing of array genes online. Bioinformatics, 16, 1038-1039.
-
(2000)
Bioinformatics
, vol.16
, pp. 1038-1039
-
-
Bouton, C.M.1
Pevsner, J.2
-
7
-
-
0011682637
-
SNOMAD: Biologist-friendly web tools for the Standardization and Normalization of MicroArray Data
-
(eds G. Parmigiani, E.S. Garrett, R.A. Irizarry and S.L. Zeger). New York: Springer. To be published
-
Colantuoni, C., Henry, G., Bouton, C.M.L.S., Zeger, S.L. and Pevsner, J. (2003) SNOMAD: biologist-friendly web tools for the Standardization and Normalization of MicroArray Data. In The Analysis of Gene Expression Data: Methods and Software (eds G. Parmigiani, E.S. Garrett, R.A. Irizarry and S.L. Zeger). New York: Springer. To be published.
-
(2003)
The Analysis of Gene Expression Data: Methods and Software
-
-
Colantuoni, C.1
Henry, G.2
Bouton, C.M.L.S.3
Zeger, S.L.4
Pevsner, J.5
-
8
-
-
0001244941
-
Estimation of finite mixture distributions through Bayesian sampling
-
Diebolt, J. and Robert, C.P. (1994) Estimation of finite mixture distributions through Bayesian sampling. J. R. Statist. Soc. B, 56, 363-375.
-
(1994)
J. R. Statist. Soc. B
, vol.56
, pp. 363-375
-
-
Diebolt, J.1
Robert, C.P.2
-
10
-
-
1542784653
-
Empirical Bayes analysis of a microarray experiment
-
Efron, B., Tibshirani, R., Storey, J.D. and Tusher, V. (2001) Empirical Bayes analysis of a microarray experiment. J. Am. Statist. Ass., 96, 1151-1160.
-
(2001)
J. Am. Statist. Ass.
, vol.96
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.D.3
Tusher, V.4
-
11
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown, P.O. and Botstein, D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natn. Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natn. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
12
-
-
0032269108
-
How many clusters?: Which clustering method?-answers via model-based cluster analysis
-
Fraley, C. and Raftery, A.E. (1998) How many clusters?: which clustering method?-answers via model-based cluster analysis. Comput. J., 41, 578-588.
-
(1998)
Comput. J.
, vol.41
, pp. 578-588
-
-
Fraley, C.1
Raftery, A.E.2
-
13
-
-
0000497169
-
Minimax multiple shrinkage estimation
-
George, E.I. (1986) Minimax multiple shrinkage estimation. Ann. Statist., 14, 188-205.
-
(1986)
Ann. Statist.
, vol.14
, pp. 188-205
-
-
George, E.I.1
-
14
-
-
84893179575
-
Variable selection via Gibbs sampling
-
George, E.I. and McCulloch, R.E. (1993) Variable selection via Gibbs sampling. J. Am. Statist. Ass., 88, 881-889.
-
(1993)
J. Am. Statist. Ass.
, vol.88
, pp. 881-889
-
-
George, E.I.1
McCulloch, R.E.2
-
16
-
-
0034568109
-
"Gene shaving" as a method for identifying distinct sets of genes with similar expression patterns
-
research0003.1-research0003.21
-
Hastie, T., Tibshirani, R., Eisen, M.B., Alizadeh, A., Levy, R., Staudt, L., Chan, W.C., Botstein, D. and Brown, P. (2000) "Gene Shaving" as a method for identifying distinct sets of genes with similar expression patterns. Genome Biol., 1, research0003.1-research0003.21.
-
(2000)
Genome Biol.
, vol.1
-
-
Hastie, T.1
Tibshirani, R.2
Eisen, M.B.3
Alizadeh, A.4
Levy, R.5
Staudt, L.6
Chan, W.C.7
Botstein, D.8
Brown, P.9
-
17
-
-
0035108235
-
A hierarchical unsupervised growing neural network for clustering gene expression patterns
-
Herrero, J., Valencia, A. and Dopazo, J. (2001) A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 17, 126-136.
-
(2001)
Bioinformatics
, vol.17
, pp. 126-136
-
-
Herrero, J.1
Valencia, A.2
Dopazo, J.3
-
18
-
-
0011695016
-
A statistical analysis of radiolabeled gene expression data
-
Fairfax: Interface Foundation of North America
-
Irizarry, R.A., Parmigiani, G., Guo, M., Dracheva, T. and Jen, J. (2001) A statistical analysis of radiolabeled gene expression data. In Computing Science and Statistics: Proc. 33rd Symp. Interface. Fairfax: Interface Foundation of North America.
-
(2001)
Computing Science and Statistics: Proc. 33rd Symp. Interface
-
-
Irizarry, R.A.1
Parmigiani, G.2
Guo, M.3
Dracheva, T.4
Jen, J.5
-
19
-
-
0011691982
-
-
Technical Report 02-01. Johns Hopkins Oncology Center, Baltimore
-
Johnston, J., Parmigiani, G., Gabrielson, E. and Anbazhagan, R. (2001) Gene expression profiling of formalin-fixed paraffin embedded tissues using cDNA microarrays. Technical Report 02-01. Johns Hopkins Oncology Center, Baltimore.
-
(2001)
Gene expression profiling of formalin-fixed paraffin embedded tissues using cDNA microarrays
-
-
Johnston, J.1
Parmigiani, G.2
Gabrielson, E.3
Anbazhagan, R.4
-
20
-
-
0041654220
-
Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis
-
Kruskal, J.B. (1964) Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrica, 29, 1-27.
-
(1964)
Psychometrica
, vol.29
, pp. 1-27
-
-
Kruskal, J.B.1
-
21
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
Lee, M.L., Kuo, F.C., Whitmore, G.A. and Sklar, J. (2000) Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natn. Acad. Sci. USA, 97, 9834-9839.
-
(2000)
Proc. Natn. Acad. Sci. USA
, vol.97
, pp. 9834-9839
-
-
Lee, M.L.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
22
-
-
0036203115
-
A mixture model-based approach to the clustering of microarray expression data
-
McLachlan, G.J., Bean, R.W. and Peel, D. (2002) A mixture model-based approach to the clustering of microarray expression data. Bioinformatics, 18, 413-422.
-
(2002)
Bioinformatics
, vol.18
, pp. 413-422
-
-
McLachlan, G.J.1
Bean, R.W.2
Peel, D.3
-
23
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton, M.A., Kendziorski, C.M., Richmond, C.S., Blattner, F.R. and Tsui, K.W. (2001) On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Comput. Biol., 8, 37-52.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
24
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
Perou, C.M., Jeffrey, S.S., van de Rijn, M., Rees, C.A., Eisen, M.B., Ross, D.T., Pergamenschikov, A., Williams, C.F., Zhu, S.X., Lee, J.C., Lashkari, D., Shalon, D., Brown, P.O. and Botstein, D. (1999) Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc. Natn. Acad. Sci. USA, 96, 9212-9217.
-
(1999)
Proc. Natn. Acad. Sci. USA
, vol.96
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
Van De Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.10
Lashkari, D.11
Shalon, D.12
Brown, P.O.13
Botstein, D.14
-
25
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush, J. (2001) Computational analysis of microarray data. Nat. Rev. Genet., 2, 418-427.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
27
-
-
0002072348
-
Clustering in an object-oriented environment
-
Rousseeuw, P., Struyf, A. and Hubert, M. (1996) Clustering in an object-oriented environment. J. Statist. Sftwr., 1, 1-30.
-
(1996)
J. Statist. Sftwr.
, vol.1
, pp. 1-30
-
-
Rousseeuw, P.1
Struyf, A.2
Hubert, M.3
-
28
-
-
0034910345
-
Navigating gene expression using microarray-a technology review
-
Schulze, A. and Downward, J. (2001) Navigating gene expression using microarray-a technology review. Nat. Cell Biol., 3, E190-E195.
-
(2001)
Nat. Cell Biol.
, vol.3
-
-
Schulze, A.1
Downward, J.2
-
29
-
-
0035237805
-
Rich probabilistic models for gene expression
-
Segal, E., Taskar, B., Gasch, A., Friedman, N. and Koller, D. (2001) Rich probabilistic models for gene expression. Bioinformatics, 17, S243-S252.
-
(2001)
Bioinformatics
, vol.17
-
-
Segal, E.1
Taskar, B.2
Gasch, A.3
Friedman, N.4
Koller, D.5
-
31
-
-
0001279441
-
BUGS: A program to perform Bayesian inference using Gibbs sampling
-
(eds J.M. Bernardo, J.O. Berger, A.P. Dawid and A.F.M. Smith) Oxford: Clarendon
-
Thomas, A., Spiegelhalter, D.J. and Gilks, W.R. (1992) BUGS: a program to perform Bayesian inference using Gibbs sampling. In Bayesian Statistics 4 (eds J.M. Bernardo, J.O. Berger, A.P. Dawid and A.F.M. Smith), pp. 837-842. Oxford: Clarendon.
-
(1992)
Bayesian Statistics
, vol.4
, pp. 837-842
-
-
Thomas, A.1
Spiegelhalter, D.J.2
Gilks, W.R.3
-
32
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng, G.C., Oh, M.K., Rohlin, L., Liao, J. and Wong, W. (2001) Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucl. Acids Res., 29, 2549-2557.
-
(2001)
Nucl. Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.4
Wong, W.5
-
33
-
-
0011565597
-
Deconvolution of mixtures in analysis of neural synaptic transmission
-
West, M. and Turner, D.A. (1994) Deconvolution of mixtures in analysis of neural synaptic transmission. Statistician, 43, 31-43.
-
(1994)
Statistician
, vol.43
, pp. 31-43
-
-
West, M.1
Turner, D.A.2
-
34
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger, R.D., Gibson, G., Wolfinger, E., Bennett, L., Hamadeh, H., Bushel, P., Afshari, C. and Paules, R. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol., 8, 625-637.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.8
-
35
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J. and Speed, T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucl. Acids Res., 30, e15.
-
(2002)
Nucl. Acids Res.
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
36
-
-
0034782618
-
Model-based clustering and data transformations for gene expression data
-
Yeung, K.Y., Fraley, C., Murua, A., Raftery, A.E. and Ruzzo, W.L. (2001) Model-based clustering and data transformations for gene expression data. Bioinformatics, 17, 977-987.
-
(2001)
Bioinformatics
, vol.17
, pp. 977-987
-
-
Yeung, K.Y.1
Fraley, C.2
Murua, A.3
Raftery, A.E.4
Ruzzo, W.L.5
|