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Volumn 1, Issue 1, 2004, Pages 13-23

Phylogenetic networks: Modeling, reconstructibility, and accuracy

Author keywords

Bipartitions; Error metric; Phylogenetic networks; Reticulate evolution; Robinson Foulds; Tripartitions

Indexed keywords

BIPARTITIONS; ERROR METRIC; PHYLOGENETIC NETWORKS; RETICULATE EVOLUTION; ROBINSON-FOULDS; TRIPATITIONS;

EID: 4644360028     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2004.10     Document Type: Article
Times cited : (149)

References (28)
  • 2
    • 0026911267 scopus 로고
    • Split decomposition: A new and useful approach to phylogenetic analysis of distance data
    • H.J. Bandelt and A.W.M. Dress, "Split Decomposition: A New and Useful Approach to Phylogenetic Analysis of Distance Data," Molecular Phylogenetics and Evolution, vol. 1, pp. 242-252, 1992.
    • (1992) Molecular Phylogenetics and Evolution , vol.1 , pp. 242-252
    • Bandelt, H.J.1    Dress, A.W.M.2
  • 3
    • 0033928911 scopus 로고    scopus 로고
    • Median networks: Speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA
    • H.J. Bandelt, V. Macaulay, and M.B. Richards, "Median Networks: Speedy Construction and Greedy Reduction, One Simulation, and Two Case Studies from Human mtDNA," Molecular Phylogenetics and Evolution, vol. 16, pp. 8-28, 2000.
    • (2000) Molecular Phylogenetics and Evolution , vol.16 , pp. 8-28
    • Bandelt, H.J.1    Macaulay, V.2    Richards, M.B.3
  • 5
    • 0030498194 scopus 로고    scopus 로고
    • Ancestral inference from samples of DNA sequences with recombination
    • R.C. Griffiths and P. Marjoram, "Ancestral Inference from Samples of DNA Sequences with Recombination," J. Computational Biology, vol. 3, pp. 479-502, 1996.
    • (1996) J. Computational Biology , vol.3 , pp. 479-502
    • Griffiths, R.C.1    Marjoram, P.2
  • 10
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • D.M. Hillis and J.P. Huelsenbeck, "Signal, Noise, and Reliability in Molecular Phylogenetic Analyses," J. Heredity, vol. 83, pp. 189-195, 1992.
    • (1992) J. Heredity , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 11
    • 0020744702 scopus 로고
    • Properties of the neutral allele model with intergenic recombination
    • R.R. Hudson, "Properties of the Neutral Allele Model with Intergenic Recombination," Theoretical Population Biology, vol. 23, pp. 183-201, 1983.
    • (1983) Theoretical Population Biology , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 12
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: A program for analyzing and visualising evolutionary data
    • D.H. Huson, "SplitsTree: A Program for Analyzing and Visualising Evolutionary Data," Bioinformatics, vol. 14, no. 1, pp. 68-73, 1998.
    • (1998) Bioinformatics , vol.14 , Issue.1 , pp. 68-73
    • Huson, D.H.1
  • 13
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • W.P. Maddison, "Gene Trees in Species Trees," Systematic Biology, vol. 46, no. 3, pp. 523-536, 1997.
    • (1997) Systematic Biology , vol.46 , Issue.3 , pp. 523-536
    • Maddison, W.P.1
  • 14
    • 0034894308 scopus 로고    scopus 로고
    • T-REX: Reconstructing and visualizing phylogenetic trees and reticulation networks
    • V. Makarenkov, "T-REX: Reconstructing and Visualizing Phylogenetic Trees and Reticulation Networks," Bioinformatics, vol. 17, no. 7, pp. 664-668, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.7 , pp. 664-668
    • Makarenkov, V.1
  • 15
    • 1842502896 scopus 로고    scopus 로고
    • From a phylogenetic tree to a reticulated network
    • V. Makarenkov and P. Legendre, "From a Phylogenetic Tree to a Reticulated Network," J. Computational Biology, vol. 11, no. 1, pp. 195-212, 2004.
    • (2004) J. Computational Biology , vol.11 , Issue.1 , pp. 195-212
    • Makarenkov, V.1    Legendre, P.2
  • 18
    • 0242659452 scopus 로고    scopus 로고
    • On the complexity of fundamental computational problems in pedigree analysis
    • UC Davis, Dept. of Computer Science
    • A. Piccolboni and D. Gusfield, "On the Complexity of Fundamental Computational Problems in Pedigree Analysis," Technical Report CSE-99-8, UC Davis, Dept. of Computer Science, 1999.
    • (1999) Technical Report CSE-99-8 , vol.CSE-99-8
    • Piccolboni, A.1    Gusfield, D.2
  • 19
    • 0036183042 scopus 로고    scopus 로고
    • The effect of recombination on the accuracy of phylogeny estimation
    • D. Posada and K.A. Crandall, "The Effect of Recombination on the Accuracy of Phylogeny Estimation," J. Molecular Evolution, vol. 54, no. 3, pp. 396-102, 2002.
    • (2002) J. Molecular Evolution , vol.54 , Issue.3 , pp. 396-1102
    • Posada, D.1    Crandall, K.A.2
  • 21
    • 0028984103 scopus 로고
    • The role of hybridization in evolution - Old wine in new skins
    • L.H. Rieseberg, "The Role of Hybridization in Evolution - Old Wine in New Skins," Am. J. Botany, vol. 82, no. 7, pp. 944-953, 1995.
    • (1995) Am. J. Botany , vol.82 , Issue.7 , pp. 944-953
    • Rieseberg, L.H.1
  • 22
    • 0033952185 scopus 로고    scopus 로고
    • Hybridization, introgression, and linkage evolution
    • L.H. Rieseberg, S.J.E. Baird, and K.A. Gardner, "Hybridization, Introgression, and Linkage Evolution," Plant Molecular Biology, vol. 42, no. 1, pp. 205-224, 2000.
    • (2000) Plant Molecular Biology , vol.42 , Issue.1 , pp. 205-224
    • Rieseberg, L.H.1    Baird, S.J.E.2    Gardner, K.A.3
  • 23
    • 0032126775 scopus 로고    scopus 로고
    • Genetic map-based studies of reticulate evolution in plants
    • L.H. Rieseberg and R.D. Noyes, "Genetic Map-Based Studies of Reticulate Evolution in Plants," Trends in Plant Science, vol. 3, no. 7, pp. 254-259, 1998.
    • (1998) Trends in Plant Science , vol.3 , Issue.7 , pp. 254-259
    • Rieseberg, L.H.1    Noyes, R.D.2
  • 24
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • D.R. Robinson and L.R. Foulds, "Comparison of Phylogenetic Trees," Math. Biosciences, vol. 53, pp. 131-147, 1981.
    • (1981) Math. Biosciences , vol.53 , pp. 131-147
    • Robinson, D.R.1    Foulds, L.R.2
  • 25
    • 0034354816 scopus 로고    scopus 로고
    • Phylogenetic models and reticulations
    • F.J. Rohlf, "Phylogenetic Models and Reticulations," J. Classification, vol. 17, no. 2, pp. 185-189, 2000.
    • (2000) J. Classification , vol.17 , Issue.2 , pp. 185-189
    • Rohlf, F.J.1
  • 26
    • 0034088330 scopus 로고    scopus 로고
    • Likelihood analysis of phylogenetic networks using directed graphical models
    • K. Strimmer and V. Moulton, "Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models," Molecular Biology and Evolution, vol. 17, pp. 875-881, 2000.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 875-881
    • Strimmer, K.1    Moulton, V.2
  • 27
    • 0035151371 scopus 로고    scopus 로고
    • Recombination analysis using directed graphical models
    • K. Strimmer, C. Wiuf, and V. Moulton, "Recombination Analysis Using Directed Graphical Models," Molecular Biology and Evolution, vol. 18, no. 1, pp. 97-99, 2001.
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.1 , pp. 97-99
    • Strimmer, K.1    Wiuf, C.2    Moulton, V.3
  • 28
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D.M. Hillis, B.K. Mable and C. Moritz, eds., Sinauer Assoc
    • D.L. Swofford, G.J. Olsen, P.J. Waddell, and D.M. Hillis, "Phylogenetic Inference," Molecular Systematics, D.M. Hillis, B.K. Mable and C. Moritz, eds., pp. 407-514, Sinauer Assoc., 1996.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.