-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh, A.A., Eisen, M.B., Davis, R.E., Ma, C., Lossos, I.S., Rosenwald, A., Boldrick, J.C., Sabet, H., Tran, T., Yu, X., et al. 2000. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
-
2
-
-
0035893766
-
Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile
-
Allander, S.V., Nupponen, N.N., Ringner, M., Hostetter, G., Maher, G.W., Goldberger, N., Chen, Y., Carpten, J., Elkahloun, A.G., and Meltzer, P.S. 2001. Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile. Cancer Res. 61: 8624-8628.
-
(2001)
Cancer Res.
, vol.61
, pp. 8624-8628
-
-
Allander, S.V.1
Nupponen, N.N.2
Ringner, M.3
Hostetter, G.4
Maher, G.W.5
Goldberger, N.6
Chen, Y.7
Carpten, J.8
Elkahloun, A.G.9
Meltzer, P.S.10
-
3
-
-
18544375333
-
MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia
-
Armstrong, S.A., Staunton, J.E., Silverman, L.B., Pieters, R., den Boer, M.L., Minden, M.D., Sallan, S.E., Lander, E.S., Golub, T.R., and Korsmeyer, S.J. 2002. MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia. Nat. Genet. 30: 41-47.
-
(2002)
Nat. Genet.
, vol.30
, pp. 41-47
-
-
Armstrong, S.A.1
Staunton, J.E.2
Silverman, L.B.3
Pieters, R.4
den Boer, M.L.5
Minden, M.D.6
Sallan, S.E.7
Lander, E.S.8
Golub, T.R.9
Korsmeyer, S.J.10
-
4
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. 2000. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25: 25-29.
-
(2000)
The Gene Ontology Consortium. Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
5
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G.D. and Hogue, C.W. 2003. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4: 2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
6
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi, A.L. and Albert, R. 1999. Emergence of scaling in random networks. Science 286: 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
7
-
-
0002226683
-
Pajek: Program for large network analysis
-
Batagelj, V. and Mrvar, A. 1998. Pajek: Program for large network analysis. Connections 21: 47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
8
-
-
0036856356
-
A duplication growth model of gene expression networks
-
Bhan, A., Galas, D.J., and Dewey, T.G. 2002. A duplication growth model of gene expression networks. Bioinformatics 18: 1486-1493.
-
(2002)
Bioinformatics
, vol.18
, pp. 1486-1493
-
-
Bhan, A.1
Galas, D.J.2
Dewey, T.G.3
-
9
-
-
0035923521
-
Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
Bhattacharjee, A., Richards, W.G., Staunton, J., Li, C., Monti, S., Vasa, P., Ladd, C., Beheshti, J., Bueno, R., Gillette, M., et al. 2001. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc. Natl. Acad. Sci. 98: 13790-13795.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 13790-13795
-
-
Bhattacharjee, A.1
Richards, W.G.2
Staunton, J.3
Li, C.4
Monti, S.5
Vasa, P.6
Ladd, C.7
Beheshti, J.8
Bueno, R.9
Gillette, M.10
-
10
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner, M., Meltzer, P., Chen, Y., Jiang, Y., Seftor, E., Hendrix, M., Radmacher, M., Simon, R., Yakhini, Z., Ben-Dor, A., et al. 2000. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 406: 536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
-
11
-
-
0037657596
-
Loss of compartmentalization causes misregulation of lysine biosynthesis in peroxisome-deficient yeast cells
-
Breitling, R., Sharif, O., Hartman, M.L., and Krisans, S.K. 2002. Loss of compartmentalization causes misregulation of lysine biosynthesis in peroxisome-deficient yeast cells. Eukaryot. Cell 1: 978-986.
-
(2002)
Eukaryot. Cell
, vol.1
, pp. 978-986
-
-
Breitling, R.1
Sharif, O.2
Hartman, M.L.3
Krisans, S.K.4
-
12
-
-
0034710924
-
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
-
Butte, A.J., Tamayo, P., Slonim, D., Golub, T.R., and Kohane, I.S. 2000. Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. Proc. Natl. Acad. Sci. 97: 12182-12186.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 12182-12186
-
-
Butte, A.J.1
Tamayo, P.2
Slonim, D.3
Golub, T.R.4
Kohane, I.S.5
-
13
-
-
0036790977
-
Diversity, topographic differentiation, and positional memory in human fibroblasts
-
Chang, H.Y., Chi, J.T., Dudoit, S., Bondre, C., van de Rijn, M., Botstein, D., and Brown, P.O. 2002. Diversity, topographic differentiation, and positional memory in human fibroblasts. Proc. Natl. Acad. Sci. 99: 12877-12882.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 12877-12882
-
-
Chang, H.Y.1
Chi, J.T.2
Dudoit, S.3
Bondre, C.4
van de Rijn, M.5
Botstein, D.6
Brown, P.O.7
-
14
-
-
0038342438
-
Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites
-
Chaussabel, D., Semnani, R.T., McDowell, M.A., Sacks, D., Sher, A., and Nutman, T.B. 2003. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood 102: 672-681.
-
(2003)
Blood
, vol.102
, pp. 672-681
-
-
Chaussabel, D.1
Semnani, R.T.2
McDowell, M.A.3
Sacks, D.4
Sher, A.5
Nutman, T.B.6
-
15
-
-
0035985214
-
Gene expression patterns in human liver cancers
-
Chen, X., Cheung, S.T., So, S., Fan, S.T., Barry, C., Higgins, J., Lai, K.M., Ji, J., Dudoit, S., Ng, I.O., et al. 2002. Gene expression patterns in human liver cancers. Mol. Biol. Cell 13: 1929-1939.
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 1929-1939
-
-
Chen, X.1
Cheung, S.T.2
So, S.3
Fan, S.T.4
Barry, C.5
Higgins, J.6
Lai, K.M.7
Ji, J.8
Dudoit, S.9
Ng, I.O.10
-
16
-
-
0037738513
-
Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells
-
Cheok, M.H., Yang, W., Pui, C.H., Downing, J.R., Cheng, C., Naeve, C.W., Relling, M.V., and Evans, W.E. 2003. Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells. Nat. Genet. 34: 85-90.
-
(2003)
Nat. Genet.
, vol.34
, pp. 85-90
-
-
Cheok, M.H.1
Yang, W.2
Pui, C.H.3
Downing, J.R.4
Cheng, C.5
Naeve, C.W.6
Relling, M.V.7
Evans, W.E.8
-
17
-
-
4944232237
-
Combining multiple microarray studies and modeling interstudy variation
-
Choi, J.K., Yu, U., Kim, S., and Yoo, O.J. 2003. Combining multiple microarray studies and modeling interstudy variation. Bioinformatics (Suppl.) 19: 184-190.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL.
, pp. 184-190
-
-
Choi, J.K.1
Yu, U.2
Kim, S.3
Yoo, O.J.4
-
18
-
-
0038579657
-
Gene profiling of hippocampal neuronal culture
-
Dabrowski, M., Aerts, S., Van Hummelen, P., Craessaerts, K., De Moor, B., Annaert, W., Moreau, Y., and De Strooper, B. 2003. Gene profiling of hippocampal neuronal culture. J. Neurochem. 85: 1279-1288.
-
(2003)
J. Neurochem.
, vol.85
, pp. 1279-1288
-
-
Dabrowski, M.1
Aerts, S.2
Van Hummelen, P.3
Craessaerts, K.4
De Moor, B.5
Annaert, W.6
Moreau, Y.7
De Strooper, B.8
-
19
-
-
0037862042
-
Integration and cross-validation of high-throughput gene expression data: Comparing heterogeneous data sets
-
Detours, V., Dumont, J.E., Bersini, H., and Maenhaut, C. 2003. Integration and cross-validation of high-throughput gene expression data: Comparing heterogeneous data sets. FEBS Lett. 546: 98-102.
-
(2003)
FEBS Lett.
, vol.546
, pp. 98-102
-
-
Detours, V.1
Dumont, J.E.2
Bersini, H.3
Maenhaut, C.4
-
20
-
-
0035939903
-
Delineation of prognostic biomarkers in prostate cancer
-
Dhanasekaran, S.M., Barrette, T.R., Ghosh, D., Shah, R., Varambally, S., Kurachi, K., Pienta, K.J., Rubin, M.A., and Chinnaiyan, A.M. 2001. Delineation of prognostic biomarkers in prostate cancer. Nature 412: 822-826.
-
(2001)
Nature
, vol.412
, pp. 822-826
-
-
Dhanasekaran, S.M.1
Barrette, T.R.2
Ghosh, D.3
Shah, R.4
Varambally, S.5
Kurachi, K.6
Pienta, K.J.7
Rubin, M.A.8
Chinnaiyan, A.M.9
-
21
-
-
0037015038
-
Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation
-
Diehn, M., Alizadeh, A.A., Rando, O.J., Liu, C.L., Stankunas, K., Botstein, D., Crabtree, G.R., and Brown, P.O. 2002. Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation. Proc. Natl. Acad. Sci. 99: 11796-11801.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 11796-11801
-
-
Diehn, M.1
Alizadeh, A.A.2
Rando, O.J.3
Liu, C.L.4
Stankunas, K.5
Botstein, D.6
Crabtree, G.R.7
Brown, P.O.8
-
22
-
-
0037224449
-
Identifying distinct classes of bladder carcinoma using microarrays
-
Dyrskjot, L., Thykjaer, T., Kruhoffer, M., Jensen, J.L., Marcussen, N., Hamilton-Dutoit, S., Wolf, H., and Orntoft, T.F. 2003. Identifying distinct classes of bladder carcinoma using microarrays. Nat. Genet. 33: 90-96.
-
(2003)
Nat. Genet.
, vol.33
, pp. 90-96
-
-
Dyrskjot, L.1
Thykjaer, T.2
Kruhoffer, M.3
Jensen, J.L.4
Marcussen, N.5
Hamilton-Dutoit, S.6
Wolf, H.7
Orntoft, T.F.8
-
23
-
-
0036081355
-
Gene expression omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M., and Lash, A.E. 2002. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30: 207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
24
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., Spellman, P.T., Brown, P.O., and Botstein, D. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. 95: 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
25
-
-
0036006175
-
Wrestling with pleiotropy: Genomic and topological analysis of the yeast gene expression network
-
Featherstone, D.E. and Broadie, K. 2002. Wrestling with pleiotropy: Genomic and topological analysis of the yeast gene expression network. Bioessays 24: 267-274.
-
(2002)
Bioessays
, vol.24
, pp. 267-274
-
-
Featherstone, D.E.1
Broadie, K.2
-
26
-
-
0035137828
-
A novel gene conserved from yeast to humans is involved in sterol biosynthesis
-
Gachotte, D., Eckstein, J., Barbuch, R., Hughes, T., Roberts, C., and Bard, M. 2001. A novel gene conserved from yeast to humans is involved in sterol biosynthesis. J. Lipid Res. 42: 150-154.
-
(2001)
J. Lipid Res.
, vol.42
, pp. 150-154
-
-
Gachotte, D.1
Eckstein, J.2
Barbuch, R.3
Hughes, T.4
Roberts, C.5
Bard, M.6
-
27
-
-
0035923583
-
Diversity of gene expression in adenocarcinoma of the lung
-
Garber, M.E., Troyanskaya, O.G., Schluens, K., Petersen, S., Thaesler, Z., Pacyna-Gengelbach, M., van de Rijn, M., Rosen, G.D., Perou, C.M., Whyte, R.I., et al. 2001. Diversity of gene expression in adenocarcinoma of the lung. Proc. Natl. Acad. Sci. 98: 13784-13789.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 13784-13789
-
-
Garber, M.E.1
Troyanskaya, O.G.2
Schluens, K.3
Petersen, S.4
Thaesler, Z.5
Pacyna-Gengelbach, M.6
van de Rijn, M.7
Rosen, G.D.8
Perou, C.M.9
Whyte, R.I.10
-
28
-
-
0035733690
-
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
-
Ge, H., Liu, Z., Church, G.M., and Vidal, M. 2001. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet. 29: 482-486.
-
(2001)
Nat. Genet.
, vol.29
, pp. 482-486
-
-
Ge, H.1
Liu, Z.2
Church, G.M.3
Vidal, M.4
-
29
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., et al. 1999. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
-
30
-
-
0035190979
-
Bioinformatic identification of potential autocrine signaling loops in cancers from gene expression profiles
-
Graeber, T.G. and Eisenberg, D. 2001. Bioinformatic identification of potential autocrine signaling loops in cancers from gene expression profiles. Nat. Genet. 29: 295-300.
-
(2001)
Nat. Genet.
, vol.29
, pp. 295-300
-
-
Graeber, T.G.1
Eisenberg, D.2
-
31
-
-
0034820537
-
Interrelating different types of genomic data, from proteome to secretome: 'Oming in on function
-
Greenbaum, D., Luscombe, N.M., Jansen, R., Qian, J., and Gerstein, M. 2001. Interrelating different types of genomic data, from proteome to secretome: 'Oming in on function. Genome Res. 11: 1463-1468.
-
(2001)
Genome Res.
, vol.11
, pp. 1463-1468
-
-
Greenbaum, D.1
Luscombe, N.M.2
Jansen, R.3
Qian, J.4
Gerstein, M.5
-
32
-
-
0037159180
-
Molecular profiles of inflammatory myopathies
-
Greenberg, S.A., Sanoudou, D., Haslett, J.N., Kohane, I.S., Kunkel, L.M., Beggs, A.H., and Amato, A.A. 2002. Molecular profiles of inflammatory myopathies. Neurology 59: 1170-1182.
-
(2002)
Neurology
, vol.59
, pp. 1170-1182
-
-
Greenberg, S.A.1
Sanoudou, D.2
Haslett, J.N.3
Kohane, I.S.4
Kunkel, L.M.5
Beggs, A.H.6
Amato, A.A.7
-
33
-
-
0035881617
-
Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns
-
Gruvberger, S., Ringner, M., Chen, Y., Panavally, S., Saal, L.H., Borg, A., Ferno, M., Peterson, C., and Meltzer, P.S. 2001. Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns. Cancer Res. 61: 5979-5984.
-
(2001)
Cancer Res.
, vol.61
, pp. 5979-5984
-
-
Gruvberger, S.1
Ringner, M.2
Chen, Y.3
Panavally, S.4
Saal, L.H.5
Borg, A.6
Ferno, M.7
Peterson, C.8
Meltzer, P.S.9
-
34
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
Hedenfalk, I., Duggan, D., Chen, Y., Radmacher, M., Bittner, M., Simon, R., Meltzer, P., Gusterson, B., Esteller, M., Kallioniemi, O.P., et al. 2001. Gene-expression profiles in hereditary breast cancer. N. Engl. J. Med. 344: 539-548.
-
(2001)
N. Engl. J. Med.
, vol.344
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
Radmacher, M.4
Bittner, M.5
Simon, R.6
Meltzer, P.7
Gusterson, B.8
Esteller, M.9
Kallioniemi, O.P.10
-
35
-
-
0037418232
-
Molecular classification of familial non-BRCA1/BRCA2 breast cancer
-
Hedenfalk, I., Ringner, M., Ben-Dor, A., Yakhini, Z., Chen, Y., Chebil, G., Ach, R., Loman, N., Olsson, H., Meltzer, P., et al. 2003. Molecular classification of familial non-BRCA1/BRCA2 breast cancer. Proc. Natl. Acad. Sci. 100: 2532-2537.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 2532-2537
-
-
Hedenfalk, I.1
Ringner, M.2
Ben-Dor, A.3
Yakhini, Z.4
Chen, Y.5
Chebil, G.6
Ach, R.7
Loman, N.8
Olsson, H.9
Meltzer, P.10
-
36
-
-
18244397978
-
Gene expression in papillary thyroid carcinoma reveals highly consistent profiles
-
Huang, Y., Prasad, M., Lemon, W.J., Hampel, H., Wright, F.A., Kornacker, K., LiVolsi, V., Frankel, W., Kloos, R.T., Eng, C., et al. 2001. Gene expression in papillary thyroid carcinoma reveals highly consistent profiles. Proc. Natl. Acad. Sci. 98: 15044-15049.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 15044-15049
-
-
Huang, Y.1
Prasad, M.2
Lemon, W.J.3
Hampel, H.4
Wright, F.A.5
Kornacker, K.6
LiVolsi, V.7
Frankel, W.8
Kloos, R.T.9
Eng, C.10
-
37
-
-
0038244058
-
Gene expression predictors of breast cancer outcomes
-
Huang, E., Cheng, S.H., Dressman, H., Pittman, J., Tsou, M.H., Horng, C.F., Bild, A., Iversen, E.S., Liao, M., Chen, C.M., et al. 2003. Gene expression predictors of breast cancer outcomes. Lancet 361: 1590-1596.
-
(2003)
Lancet
, vol.361
, pp. 1590-1596
-
-
Huang, E.1
Cheng, S.H.2
Dressman, H.3
Pittman, J.4
Tsou, M.H.5
Horng, C.F.6
Bild, A.7
Iversen, E.S.8
Liao, M.9
Chen, C.M.10
-
38
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
Jansen, R., Greenbaum, D., and Gerstein, M. 2002. Relating whole-genome expression data with protein-protein interactions. Genome Res. 12: 37-46.
-
(2002)
Genome Res.
, vol.12
, pp. 37-46
-
-
Jansen, R.1
Greenbaum, D.2
Gerstein, M.3
-
39
-
-
0037014795
-
Gene expression profiles of BRCA1-linked, BRCA2-linked, and sporadic ovarian cancers
-
Jazaeri, A.A., Yee, C.J., Sotiriou, C., Brantley, K.R., Boyd, J., and Liu, E.T. 2002. Gene expression profiles of BRCA1-linked, BRCA2-linked, and sporadic ovarian cancers. J. Natl. Cancer Inst. 94: 990-1000.
-
(2002)
J. Natl. Cancer Inst.
, vol.94
, pp. 990-1000
-
-
Jazaeri, A.A.1
Yee, C.J.2
Sotiriou, C.3
Brantley, K.R.4
Boyd, J.5
Liu, E.T.6
-
40
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S.P., Barabasi, A.L., and Oltvai, Z.N. 2001. Lethality and centrality in protein networks. Nature 411: 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
41
-
-
0036279153
-
Protein interaction verification and functional annotation by integrated analysis of genome-scale data
-
Kemmeren, P., van Berkum, N.L., Vilo, J., Bijma, T., Donders, R., Brazma, A., and Holstege, F.C. 2002. Protein interaction verification and functional annotation by integrated analysis of genome-scale data. Mol. Cell 9: 1133-1143.
-
(2002)
Mol. Cell
, vol.9
, pp. 1133-1143
-
-
Kemmeren, P.1
van Berkum, N.L.2
Vilo, J.3
Bijma, T.4
Donders, R.5
Brazma, A.6
Holstege, F.C.7
-
42
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan, J., Wei, J.S., Ringner, M., Saal, L.H., Ladanyi, M., Westermann, F., Berthold, F., Schwab, M., Antonescu, C.R., Peterson, C., et al. 2001. Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat. Med. 7: 673-679.
-
(2001)
Nat. Med.
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
-
43
-
-
0037447352
-
Overexpression of the EGFR/FKBP12/HIF-2α pathway identified in childhood astrocytomas by angiogenesis gene profiling
-
Khatua, S., Peterson, K.M., Brown, K.M., Lawlor, C., Santi, M.R., LaFleur, B., Dressman, D., Stephan, D.A., and MacDonald, T.J. 2003. Overexpression of the EGFR/FKBP12/HIF-2α pathway identified in childhood astrocytomas by angiogenesis gene profiling. Cancer Res. 63: 1865-1870.
-
(2003)
Cancer Res.
, vol.63
, pp. 1865-1870
-
-
Khatua, S.1
Peterson, K.M.2
Brown, K.M.3
Lawlor, C.4
Santi, M.R.5
LaFleur, B.6
Dressman, D.7
Stephan, D.A.8
MacDonald, T.J.9
-
44
-
-
0036211063
-
Analysis of matched mRNA measurements from two different microarray technologies
-
Kuo, W.P., Jenssen, T.K., Butte, A.J., Ohno-Machado, L., and Kohane, I.S. 2002. Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 18: 405-412.
-
(2002)
Bioinformatics
, vol.18
, pp. 405-412
-
-
Kuo, W.P.1
Jenssen, T.K.2
Butte, A.J.3
Ohno-Machado, L.4
Kohane, I.S.5
-
45
-
-
0036178995
-
Control genes and variability: Absence of ubiquitous reference transcripts in diverse mammalian expression studies
-
Lee, P.D., Sladek, R., Greenwood, C.M., and Hudson, T.J. 2002. Control genes and variability: Absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res. 12: 292-297.
-
(2002)
Genome Res.
, vol.12
, pp. 292-297
-
-
Lee, P.D.1
Sladek, R.2
Greenwood, C.M.3
Hudson, T.J.4
-
46
-
-
0037059002
-
Phospholipase A2 group IIA expression in gastric adenocarcinoma is associated with prolonged survival and less frequent metastasis
-
Leung, S.Y., Chen, X., Chu, K.M., Yuen, S.T., Mathy, J., Ji, J., Chan, A.S., Li, R., Law, S., Troyanskaya, O.G., et al. 2002. Phospholipase A2 group IIA expression in gastric adenocarcinoma is associated with prolonged survival and less frequent metastasis. Proc. Natl. Acad. Sci. 99: 16203-16208.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 16203-16208
-
-
Leung, S.Y.1
Chen, X.2
Chu, K.M.3
Yuen, S.T.4
Mathy, J.5
Ji, J.6
Chan, A.S.7
Li, R.8
Law, S.9
Troyanskaya, O.G.10
-
47
-
-
0037480738
-
Investigating semantic similarity measures across the gene ontology: The relationship between sequence and annotation
-
Lord, P.W., Stevens, R.D., Brass, A., and Goble, C.A. 2003. Investigating semantic similarity measures across the gene ontology: The relationship between sequence and annotation. Bioinformatics 19: 1275-1283.
-
(2003)
Bioinformatics
, vol.19
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.A.4
-
48
-
-
0035874995
-
Human prostate cancer and benign prostatic hyperplasia: Molecular dissection by gene expression profiling
-
Luo, J., Duggan, D.J., Chen, Y., Sauvageot, J., Ewing, C.M., Bittner, M.L., Trent, J.M., and Isaacs, W.B. 2001. Human prostate cancer and benign prostatic hyperplasia: Molecular dissection by gene expression profiling. Cancer Res. 61: 4683-4688.
-
(2001)
Cancer Res.
, vol.61
, pp. 4683-4688
-
-
Luo, J.1
Duggan, D.J.2
Chen, Y.3
Sauvageot, J.4
Ewing, C.M.5
Bittner, M.L.6
Trent, J.M.7
Isaacs, W.B.8
-
49
-
-
0038137601
-
Gene expression profiles of human breast cancer progression
-
Ma, X.J., Salunga, R., Tuggle, J.T., Gaudet, J., Enright, E., McQuary, P., Payette, T., Pistone, M., Stecker, K., Zhang, B.M., et al. 2003. Gene expression profiles of human breast cancer progression. Proc. Natl. Acad. Sci. 100: 5974-5979.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 5974-5979
-
-
Ma, X.J.1
Salunga, R.2
Tuggle, J.T.3
Gaudet, J.4
Enright, E.5
McQuary, P.6
Payette, T.7
Pistone, M.8
Stecker, K.9
Zhang, B.M.10
-
50
-
-
0034794796
-
Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease
-
MacDonald, T.J., Brown, K.M., LaFleur, B., Peterson, K., Lawlor, C., Chen, Y., Packer, R.J., Cogen, P., and Stephan, D.A. 2001. Expression profiling of medulloblastoma: PDGFRA and the RAS/MAPK pathway as therapeutic targets for metastatic disease. Nat. Genet. 29: 143-152.
-
(2001)
Nat. Genet.
, vol.29
, pp. 143-152
-
-
MacDonald, T.J.1
Brown, K.M.2
LaFleur, B.3
Peterson, K.4
Lawlor, C.5
Chen, Y.6
Packer, R.J.7
Cogen, P.8
Stephan, D.A.9
-
51
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte, E.M., Pellegrini, M., Thompson, M.J., Yeates, T.O., and Eisenberg, D. 1999. A combined algorithm for genome-wide prediction of protein function. Nature 402: 83-86.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
52
-
-
0037070754
-
Molecular characterisation of soft tissue tumours: A gene expression study
-
Nielsen, T.O., West, R.B., Linn, S.C., Alter, O., Knowling, M.A., O'Connell, J.X., Zhu, S., Fero, M., Sherlock, G., Pollack, J.R., et al. 2002. Molecular characterisation of soft tissue tumours: A gene expression study. Lancet 359: 1301-1307.
-
(2002)
Lancet
, vol.359
, pp. 1301-1307
-
-
Nielsen, T.O.1
West, R.B.2
Linn, S.C.3
Alter, O.4
Knowling, M.A.5
O'Connell, J.X.6
Zhu, S.7
Fero, M.8
Sherlock, G.9
Pollack, J.R.10
-
53
-
-
0037314097
-
Matrix2png: A utility for creating matrix visualizations
-
Pavlidis, P. and Noble, W.S. 2003. Matrix2png: A utility for creating matrix visualizations. Bioinformatics 19: 295-296.
-
(2003)
Bioinformatics
, vol.19
, pp. 295-296
-
-
Pavlidis, P.1
Noble, W.S.2
-
54
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
Perou, C.M., Jeffrey, S.S., van de Rijn, M., Rees, C.A., Eisen, M.B., Ross, D.T., Pergamenschikov, A., Williams, C.F., Zhu, S.X., Lee, J.C., et al. 1999. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc. Natl. Acad. Sci. 96: 9212-9217.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
van de Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.10
-
55
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou, C.M., Sorlie, T., Eisen, M.B., van de Rijn, M., Jeffrey, S.S., Rees, C.A., Pollack, J.R., Ross, D.T., Johnsen, H., Akslen, L.A., et al. 2000. Molecular portraits of human breast tumours. Nature 406: 747-752.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
van de Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
-
56
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy, S.L., Tamayo, P., Gaasenbeek, M., Studa, L.M., Angelo, M., McLaughlin, M.E., Kim, J.Y., Goumnerova, L.C., Black, P.M., Lau, C., et al. 2002. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 415: 436-442.
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Studa, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.7
Goumnerova, L.C.8
Black, P.M.9
Lau, C.10
-
57
-
-
0035162594
-
RefSeq and LocusLink: NCBI gene-centered resources
-
Pruitt, K.D. and Maglott, D.R. 2001. RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res. 29: 137-140.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 137-140
-
-
Pruitt, K.D.1
Maglott, D.R.2
-
58
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
Ramaswamy, S., Tamayo, P., Rifkin, R., Mukherjee, S., Yeang, C.H., Angelo, M., Ladd, C., Reich, M., Latulippe, E., Mesirov, J.P., et al. 2001. Multiclass cancer diagnosis using tumor gene expression signatures. Proc. Natl. Acad. Sci. 98: 15149-15154.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 15149-15154
-
-
Ramaswamy, S.1
Tamayo, P.2
Rifkin, R.3
Mukherjee, S.4
Yeang, C.H.5
Angelo, M.6
Ladd, C.7
Reich, M.8
Latulippe, E.9
Mesirov, J.P.10
-
59
-
-
0037226593
-
A molecular signature of metastasis in primary solid tumors
-
Ramaswamy, S., Ross, K.N., Lander, E.S., and Golub, T.R. 2003. A molecular signature of metastasis in primary solid tumors. Nat. Genet. 33: 49-54.
-
(2003)
Nat. Genet.
, vol.33
, pp. 49-54
-
-
Ramaswamy, S.1
Ross, K.N.2
Lander, E.S.3
Golub, T.R.4
-
60
-
-
0036682376
-
Meta-analysis of microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer
-
Rhodes, D.R., Barrette, T.R., Rubin, M.A., Ghosh, D., and Chinnaiyan, A.M. 2002. Meta-analysis of microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Res. 62: 4427-4433.
-
(2002)
Cancer Res.
, vol.62
, pp. 4427-4433
-
-
Rhodes, D.R.1
Barrette, T.R.2
Rubin, M.A.3
Ghosh, D.4
Chinnaiyan, A.M.5
-
61
-
-
0035884608
-
Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis
-
Rickman, D.S., Bobek, M.P., Misek, D.E., Kuick, R., Blaivas, M., Kurnit, D.M., Taylor, J., and Hanash, S.M. 2001. Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis. Cancer Res. 61: 6885-6891.
-
(2001)
Cancer Res.
, vol.61
, pp. 6885-6891
-
-
Rickman, D.S.1
Bobek, M.P.2
Misek, D.E.3
Kuick, R.4
Blaivas, M.5
Kurnit, D.M.6
Taylor, J.7
Hanash, S.M.8
-
62
-
-
0035803371
-
Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia
-
Rosenwald, A., Alizadeh, A.A., Widhopf, G., Simon, R., Davis, R.E., Yu, X., Yang, L., Pickeral, O.K., Rassenti, L.Z., Powell, J., et al. 2001. Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia. J. Exp. Med. 194: 1639-1647.
-
(2001)
J. Exp. Med.
, vol.194
, pp. 1639-1647
-
-
Rosenwald, A.1
Alizadeh, A.A.2
Widhopf, G.3
Simon, R.4
Davis, R.E.5
Yu, X.6
Yang, L.7
Pickeral, O.K.8
Rassenti, L.Z.9
Powell, J.10
-
63
-
-
0034793999
-
A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines
-
Ross, D.T. and Perou, C.M. 2001. A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines. Dis. Markers 17: 99-109.
-
(2001)
Dis. Markers
, vol.17
, pp. 99-109
-
-
Ross, D.T.1
Perou, C.M.2
-
64
-
-
0034050902
-
Systematic variation in gene expression patterns in human cancer cell lines
-
Ross, D.T., Scherf, U., Eisen, M.B., Perou, C.M., Rees, C., Spellman, P., Iyer, V., Jeffrey, S.S., Van de Rijn, M., Waltham, M., et al. 2000. Systematic variation in gene expression patterns in human cancer cell lines. Nat. Genet. 24: 227-235.
-
(2000)
Nat. Genet.
, vol.24
, pp. 227-235
-
-
Ross, D.T.1
Scherf, U.2
Eisen, M.B.3
Perou, C.M.4
Rees, C.5
Spellman, P.6
Iyer, V.7
Jeffrey, S.S.8
Van de Rijn, M.9
Waltham, M.10
-
65
-
-
0035121363
-
Tara, a novel F-actin binding protein, associates with the Trio guanine nucleotide exchange factor and regulates actin cytoskeletal organization
-
Seipel, K., O'Brien, S.P., Iannotti, E., Medley, Q.G., and Streuli, M. 2001. Tara, a novel F-actin binding protein, associates with the Trio guanine nucleotide exchange factor and regulates actin cytoskeletal organization. J. Cell Sci. 114: 389-399.
-
(2001)
J. Cell Sci.
, vol.114
, pp. 389-399
-
-
Seipel, K.1
O'Brien, S.P.2
Iannotti, E.3
Medley, Q.G.4
Streuli, M.5
-
66
-
-
0035175010
-
The Stanford Microarray Database
-
Sherlock, G., Hernandez-Boussard, T., Kasarskis, A., Binkley, G., Matese, J.C., Dwight, S.S., Kaloper, M., Weng, S., Jin, H., Ball, C.A., et al. 2001. The Stanford Microarray Database. Nucleic Acids Res. 29: 152-155.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Hernandez-Boussard, T.2
Kasarskis, A.3
Binkley, G.4
Matese, J.C.5
Dwight, S.S.6
Kaloper, M.7
Weng, S.8
Jin, H.9
Ball, C.A.10
-
67
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp, M.A., Ross, K.N., Tamayo, P., Weng, A.P., Kutok, J.L., Aguiar, R.C., Gaasenbeek, M., Angelo, M., Reich, M., Pinkus, G.S., et al. 2002. Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat. Med. 8: 68-74.
-
(2002)
Nat. Med.
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
Aguiar, R.C.6
Gaasenbeek, M.7
Angelo, M.8
Reich, M.9
Pinkus, G.S.10
-
68
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
Singh, D., Febbo, P.G., Ross, K., Jackson, D.G., Manola, J., Ladd, C., Tamayo, P., Renshaw, A.A., D'Amico, A.V., Richie, J.P., et al. 2002. Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 1: 203-209.
-
(2002)
Cancer Cell
, vol.1
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
-
69
-
-
0038056347
-
Telomerase modulates expression of growth-controlling genes and enhances cell proliferation
-
Smith, L.L., Coller, H.A., and Roberts, J.M. 2003. Telomerase modulates expression of growth-controlling genes and enhances cell proliferation. Nat. Cell Biol. 5: 474-479.
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 474-479
-
-
Smith, L.L.1
Coller, H.A.2
Roberts, J.M.3
-
70
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie, T., Perou, C.M., Tibshirani, R., Aas, T., Geisler, S., Johnsen, H., Hastie, T., Eisen, M.B., van de Rijn, M., Jeffrey, S.S., et al. 2001. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl. Acad. Sci. 98: 10869-10874.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
van de Rijn, M.9
Jeffrey, S.S.10
-
71
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie, T., Tibshirani, R., Parker, J., Hastie, T., Marron, J.S., Nobel, A., Deng, S., Johnsen, H., Pesich, R., Geisler, S., et al. 2003. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc. Natl. Acad. Sci. 100: 8418-8423.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 8418-8423
-
-
Sorlie, T.1
Tibshirani, R.2
Parker, J.3
Hastie, T.4
Marron, J.S.5
Nobel, A.6
Deng, S.7
Johnsen, H.8
Pesich, R.9
Geisler, S.10
-
72
-
-
0035845531
-
Chemosensitivity prediction by transcriptional profiling
-
Staunton, J.E., Slonim, D.K., Coller, H.A., Tamayo, P., Angelo, M.J., Park, J., Scherf, U., Lee, J.K., Reinhold, W.O., Weinstein, J.N., et al. 2001. Chemosensitivity prediction by transcriptional profiling. Proc. Natl. Acad. Sci. 98: 10787-10792.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 10787-10792
-
-
Staunton, J.E.1
Slonim, D.K.2
Coller, H.A.3
Tamayo, P.4
Angelo, M.J.5
Park, J.6
Scherf, U.7
Lee, J.K.8
Reinhold, W.O.9
Weinstein, J.N.10
-
73
-
-
0033538531
-
Fundamentally different logic of gene regulation in eukaryotes and prokaryotes
-
Struhl, K. 1999. Fundamentally different logic of gene regulation in eukaryotes and prokaryotes. Cell 98: 1-4.
-
(1999)
Cell
, vol.98
, pp. 1-4
-
-
Struhl, K.1
-
74
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart, J.M., Segal, E., Koller, D., and Kim, S.K. 2003. A gene-coexpression network for global discovery of conserved genetic modules. Science 302: 249-255.
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
75
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
Su, A.I., Cooke, M.P., Ching, K.A., Hakak, Y., Walker, J.R., Wiltshire, T., Orth, A.P., Vega, R.G., Sapinoso, L.M., Moqrich, A., et al. 2002. Large-scale analysis of the human and mouse transcriptomes. Proc. Natl. Acad. Sci. 99: 4465-4470.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
-
76
-
-
0037090342
-
Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis: A novel model of pathogenesis
-
Tezak, Z., Hoffman, E.P., Lutz, J.L., Fedczyna, T.O., Stephan, D., Bremer, E.G., Krasnoselska-Riz, I., Kumar, A., and Pachman, L.M. 2002. Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis: A novel model of pathogenesis. J. Immunol. 168: 4154-4163.
-
(2002)
J. Immunol.
, vol.168
, pp. 4154-4163
-
-
Tezak, Z.1
Hoffman, E.P.2
Lutz, J.L.3
Fedczyna, T.O.4
Stephan, D.5
Bremer, E.G.6
Krasnoselska-Riz, I.7
Kumar, A.8
Pachman, L.M.9
-
77
-
-
0036175877
-
Impact of viral infection on the gene expression profiles of proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
-
Vahey, M.T., Nau, M.E., Jagodzinski, L.L., Yalley-Ogunro, J., Taubman, M., Michael, N.L., and Lewis, M.G. 2002. Impact of viral infection on the gene expression profiles of proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF. AIDS Res. Hum. Retroviruses 18: 179-192.
-
(2002)
AIDS Res. Hum. Retroviruses
, vol.18
, pp. 179-192
-
-
Vahey, M.T.1
Nau, M.E.2
Jagodzinski, L.L.3
Yalley-Ogunro, J.4
Taubman, M.5
Michael, N.L.6
Lewis, M.G.7
-
78
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer, L.J., Dal, H., van de Vijver, M.J., He, Y.D., Hart, A.A., Mao, M., Peterse, H.L., van der Kooy, K., Marton, M.J., Witteveen, A.T., et al. 2002. Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dal, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
79
-
-
0035970039
-
Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics
-
Virtaneva, K., Wright, F.A., Tanner, S.M., Yuan, B., Lemon, W.J., Caligiuri, M.A., Bloomfield, C.D., de La Chapelle, A., and Krahe, R. 2001. Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics. Proc. Natl. Acad. Sci. 98: 1124-1129.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 1124-1129
-
-
Virtaneva, K.1
Wright, F.A.2
Tanner, S.M.3
Yuan, B.4
Lemon, W.J.5
Caligiuri, M.A.6
Bloomfield, C.D.7
de La Chapelle, A.8
Krahe, R.9
-
80
-
-
0031309902
-
The discoidin domain receptor tyrosine kinases are activated by collagen
-
Vogel, W., Gish, G.D., Alves, F., and Pawson, T. 1997. The discoidin domain receptor tyrosine kinases are activated by collagen. Mol. Cell 1: 13-23.
-
(1997)
Mol. Cell
, vol.1
, pp. 13-23
-
-
Vogel, W.1
Gish, G.D.2
Alves, F.3
Pawson, T.4
-
81
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S.G., Fields, S., and Bork, P. 2002. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417: 399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
82
-
-
0036528247
-
Wnt5a signaling directly affects cell motility and invasion of metastatic melanoma
-
Weeraratna, A.T., Jiang, Y., Hostetter, G., Rosenblatt, K., Duray, P., Bittner, M., and Trent, J.M. 2002. Wnt5a signaling directly affects cell motility and invasion of metastatic melanoma. Cancer Cell 1: 279-288.
-
(2002)
Cancer Cell
, vol.1
, pp. 279-288
-
-
Weeraratna, A.T.1
Jiang, Y.2
Hostetter, G.3
Rosenblatt, K.4
Duray, P.5
Bittner, M.6
Trent, J.M.7
-
83
-
-
0347768064
-
Senescence-related changes in gene expression in muscle: Similarities and differences between mice and men
-
Welle, S., Brooks, A., and Thornton, C.A. 2001. Senescence-related changes in gene expression in muscle: Similarities and differences between mice and men. Physiol. Genomics 5: 67-73.
-
(2001)
Physiol. Genomics
, vol.5
, pp. 67-73
-
-
Welle, S.1
Brooks, A.2
Thornton, C.A.3
-
84
-
-
0035970050
-
Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer
-
Welsh, J.B., Zarrinkar, P.P., Sapinoso, L.M., Kern, S.G., Behling, C.A., Monk, B.J., Lockhart, D.J., Burger, R.A., and Hampton, G.M. 2001. Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer. Proc. Natl. Acad. Sci. 98: 1176-1181.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 1176-1181
-
-
Welsh, J.B.1
Zarrinkar, P.P.2
Sapinoso, L.M.3
Kern, S.G.4
Behling, C.A.5
Monk, B.J.6
Lockhart, D.J.7
Burger, R.A.8
Hampton, G.M.9
-
85
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West, M., Blanchette, C., Dressman, H., Huang, E., Ishida, S., Spang, R., Zuzan, H., Olson Jr., J.A., Marks, J.R., and Nevins, J.R. 2001. Predicting the clinical status of human breast cancer by using gene expression profiles. Proc. Natl. Acad. Sci. 98: 11462-11467.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
Spang, R.6
Zuzan, H.7
Olson Jr., J.A.8
Marks, J.R.9
Nevins, J.R.10
-
86
-
-
0004156776
-
Resampling-based multiple testing
-
Wiley, New York
-
Westfall, P.H. and Young, S.S. 1993. Resampling-based multiple testing. Wiley, New York.
-
(1993)
-
-
Westfall, P.H.1
Young, S.S.2
-
87
-
-
0035162272
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D.L., Church, D.M., Lash, A.E., Leipe, D.D., Madden, T.L., Pontius, J.U., Schuler, G.D., Schriml, L.M., Tatusova, T.A., Wagner, L., et al. 2001. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 29: 11-16.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 11-16
-
-
Wheeler, D.L.1
Church, D.M.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Tatusova, T.A.9
Wagner, L.10
-
88
-
-
0035985177
-
Identification of genes periodically expressed in the human cell cycle and their expression in tumors
-
Whitfield, M.L., Sherlock, G., Saldanha, A.J., Murray, J.I., Ball, C.A., Alexander, K.E., Matese, J.C., Perou, C.M., Hurt, M.M., Brown, P.O., et al. 2002. Identification of genes periodically expressed in the human cell cycle and their expression in tumors. Mol. Biol. Cell 13: 1977-2000.
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 1977-2000
-
-
Whitfield, M.L.1
Sherlock, G.2
Saldanha, A.J.3
Murray, J.I.4
Ball, C.A.5
Alexander, K.E.6
Matese, J.C.7
Perou, C.M.8
Hurt, M.M.9
Brown, P.O.10
-
89
-
-
0035878393
-
Identification of MAL2, a novel member of the mal proteolipid family, though interactions with TPD52-like proteins in the yeast two-hybrid system
-
Wilson, S.H., Bailey, A.M., Nourse, C.R., Mattei, M.G., and Byrne, J.A. 2001. Identification of MAL2, a novel member of the mal proteolipid family, though interactions with TPD52-like proteins in the yeast two-hybrid system. Genomics 76: 81-88.
-
(2001)
Genomics
, vol.76
, pp. 81-88
-
-
Wilson, S.H.1
Bailey, A.M.2
Nourse, C.R.3
Mattei, M.G.4
Byrne, J.A.5
-
90
-
-
0037221729
-
Dysregulation of the annexin family protein family is associated with prostate cancer progression
-
Xin, W., Rhodes, D.R., Ingold, C., Chinnaiyan, A.M., and Rubin, M.A. 2003. Dysregulation of the annexin family protein family is associated with prostate cancer progression. Am. J. Pathol. 162: 255-261.
-
(2003)
Am. J. Pathol.
, vol.162
, pp. 255-261
-
-
Xin, W.1
Rhodes, D.R.2
Ingold, C.3
Chinnaiyan, A.M.4
Rubin, M.A.5
-
91
-
-
19044399684
-
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
-
Yeoh, E.J., Ross, M.E., Shurtleff, S.A., Williams, W.K., Patel, D., Mahfouz, R., Behm, F.G., Raimondi, S.C., Relling, M.V., Patel, A., et al. 2002. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 1: 133-143.
-
(2002)
Cancer Cell
, vol.1
, pp. 133-143
-
-
Yeoh, E.J.1
Ross, M.E.2
Shurtleff, S.A.3
Williams, W.K.4
Patel, D.5
Mahfouz, R.6
Behm, F.G.7
Raimondi, S.C.8
Relling, M.V.9
Patel, A.10
-
92
-
-
0037180503
-
Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53
-
Yoon, H., Liyanarachchi, S., Wright, F.A., Davuluri, R., Lockman, J.C., de la Chapelle, A., and Pellegata, N.S. 2002. Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53. Proc. Natl. Acad. Sci. 99: 15632-15637.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 15632-15637
-
-
Yoon, H.1
Liyanarachchi, S.2
Wright, F.A.3
Davuluri, R.4
Lockman, J.C.5
de la Chapelle, A.6
Pellegata, N.S.7
-
93
-
-
0037095769
-
Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays
-
Yuen, T., Wurmbach, E., Pfeffer, R.L., Ebersole, B.J., and Sealfon, S.C. 2002. Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Res. 30: e48.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yuen, T.1
Wurmbach, E.2
Pfeffer, R.L.3
Ebersole, B.J.4
Sealfon, S.C.5
|