Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 9, 1997, Pages 4811-4815

  Takahata, Naoyuki ^a   Satta, Yoko ^a  

^a GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

ancestral polymorphism; maximum likelihood method; neutrality; primate evolution; silent substitution rate

Indexed keywords

ARTICLE; BIODIVERSITY; DNA SEQUENCE; GENETIC POLYMORPHISM; PHYLOGENY; PRIMATE; PRIORITY JOURNAL; TAXONOMY;

ANIMALS; COMPUTER SIMULATION; EVOLUTION, MOLECULAR; HAPLORHINI; HOMINIDAE; HUMANS; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MUTAGENESIS; PHYLOGENY; POLYMORPHISM, GENETIC; POPULATION DENSITY;

EID: 0030895289     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.9.4811     Document Type: Article

References (41)

1. Martin, R. D. (1993) Nature (London) 363, 223-234.
2. Pilbeam, D. R. (1984) Sci. Amer. 250, No. 3, 60-69.
3. Koop, B. F., Goodman, M., Xu, P., Chan, K. & Slightom, J. L. (1986) Nature (London) 319, 234-238.
4. Sarich, V. M. & Wilson, A. C. (1967) Science 158, 1200-1203.
5. Brown, W. M. (1980) Proc. Natl. Acad. Sci. USA 77, 3605-3609.
6. Sibley, C. G. & Ahlquist, J. E. (1984) J. Mol. Evol. 20, 2-15.
7. Sibley, C. G. & Ahlquist, J. E. (1987) J. Mol. Evol. 26, 99-121.
8. Ruvolo, M., Pan, D., Zehr, T. Doldberg, T., Disotell, T. R. & von Dornum, M. (1994) Proc. Natl. Acad. Sci. USA 91, 8900-8904.
9. Horai, S., Hayasaka, K., Kondo, R., Tsugane, K. & Takahata, N. (1995) Proc. Natl. Acad. Sci. USA 92, 532-536.
10. Rogers, J. (1993) J. Hum. Evol. 25, 201-215.
11. Takahata, N. (1995) Annu. Rev. Ecol. Sys. 26, 343-372.
12. Nei, M. (1987) Molecular Evolutionary Genetics (Columbia Univ. Press, New York).
13. Takahata, N., Satta, Y. & Klein, J. (1995) Theor. Popul. Biol. 48, 198-221.
14. Takahata, N. (1986) Genet. Res. 48, 187-190.
15. Kimura, M. (1980) J. Mol. Evol. 16, 111-120.
16. Jukes, T. H. & Cantor, C. R. (1969) in Mammalian Protein Metabolism III, ed. Munro, H. N. (Academic, New York), pp. 21-132.
17. Hasegawa, M., Kishino, H. & Yano, T. (1985) J. Mol. Evol. 22, 160-174.
18. Rzhetsky, A. (1995) Genetics 141, 771-783.
19. Muse, S. V. & Grant, B. S. (1994) Mol. Biol. Evol. 11, 715-724.
20. Muse, S. V. (1996) Mol. Biol. Evol. 13, 105-114.
21. Kocher, T. D. & Wilson, A. C. (1991) in Evolution of Life: Fossils, Molecules, and Culture, eds. Osawa, S. & Honjo, T. (Springer, Tokyo), pp. 391-413.
22. Tamura, K. & Nei, M. (1993) Mol. Biol. Evol. 10, 512-526.
23. Feller, W. (1971) An Introduction to Probability Theory and Its Application (Wiley, New York), 2nd Ed., Vol. II.
24. Takahata, N. (1991) Proc. R. Soc. London Ser. B 243, 13-18.
25. Kingman, J. F. C. (1982) J. Appl. Prob. 19, 27-43.
26. Takahata, N. (1991) Theor. Popul. Biol. 39, 329-344.
27. Jolly, A. (1985) The Evolution of Primate Behavior (Macmillan, New York), 2nd Ed.
28. Li, W. H. & Tanimura, M. (1987) Nature (London) 326, 93-96.
29. Satta, Y., O'HUigin, C., Takahata, N. & Klein, J. (1993) Proc. Natl. Acad. Sci. USA 90, 7480-7484.
30. Smith, A. G., Smith, D. G. & Funnel, B. M. (1994) Atlas of Mesozoic and Cenozoic Coastlines (Cambridge Univ. Press, Cambridge).
31. Storey, B. C. (1995) Nature (London) 377, 301-308.
32. Takahata, N. (1993) Mol. Biol. Evol. 10, 2-22.
33. Nei, M. & Gram, D. (1984) Evol. Biol. 17, 73-118.
34. Li, W. H. & Sadler, L. A. (1991) Genetics 129, 513-523.
35. Klein, J., Takahata, N. & Ayala, F. J. (1993) Sci. Amer. 269, No. 6, 78-83.
36. Li, W. H., Tanimura, M. & Sharp, P. M. (1987) J. Mol. Evol. 25, 330-342.
37. Herbert, G. & Easteal, S. (1996) Mol. Biol. Evol. 13, 1054-1057.
38. Li, W. H., Ellsworth, D. L., Krushkal, J., Chang, B. H.-J. & Hewett-Emmett, D. (1996) Mol. Phylogenet. Evol. 5, 182-187.
39. Crow, J. F. & Kimura, M. (1970) An Introduction to Population Genetics Theory (Harper and Row, New York).
40. Wright, S. (1969) Evolution and the Genetics of Populations (Univ. of Chicago Press, Chicago), Vol. 2.
41. Yang, Z. (1997) Genet. Res., in press.