A simple algorithm to infer gene duplication and speciation events on a gene tree

Bioinformatics

Volumn 17, Issue 9, 2001, Pages 821-828

  Zmasek, Christian M ^a   Eddy, Sean R ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; BIODIVERSITY; COMPUTER ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; DATA BASE; GENE DUPLICATION; GENE FUNCTION; GENETIC ANALYSIS; HUMAN; INFORMATION PROCESSING; MOUSE; NEMATODE; NONHUMAN; PHYLOGENY; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; YEAST;

EID: 0034791426     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.9.821     Document Type: Article

References (37)

1. Evidence for a clade of nematodes, arthropods and other moulting animals
2. Basic local alignment search tool
3. InterPro-an, integrated documentation resource for protein families, domains and functional sites
4. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
5. Spacing differentiation in the developing Drosophila eye: A fibrinogen-related lateral inhibitor encoded by scabrous
6. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
7. The Pfam protein families database
8. Notung: Dating gene duplications using gene family trees
9. Introduction to Algorithms
10. A model of evolutionary change in proteins
11. Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
12. Vorhersage von Genduplikationen und deren Entwicklung in der Evolution
13. On the equivalence of two tree mapping measures
14. Duplication-based measures of difference between gene and species trees
15. Confidence limits on phylogenies: An approach using the bootstrap
16. Structure of the human gamma-fibrinogen gene. Alternate mRNA splicing near the 3 end of the gene produces gamma A and gamma B forms of gamma-fibrinogen
17. Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
18. Reconstruction of ancient phylogenies
19. An Introduction to Parallel Algorithms
20. A cDNA clone for cytotactin contains sequences similar to epidermal growth factor-like repeats and segments of fibronectin and fibrinogen
21. Bayesian phylogenetic inference via Markov chain Monte Carlo methods
22. A biologically consistent model for comparing molecular phylogenies
23. Estimation and interpretation of genetic distance in empirical studies
24. Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas
25. GeneTree: Comparing gene and species phylogenies using reconciled trees
26. Reconciled trees and incongruent gene and species trees
27. Molecular Evolution: A Phylogenetic Approach
28. Association of mouse fibrinogen-like protein with murine hepatitis virus-induced prothrombinase activity
29. The neighbor-joining method: A new method for reconstructing phylogenetic trees
30. On finding lowest common ancestors: Simplification and parallelization
31. Phylogenetic inference
32. The COG database: New developments in phylogenetic classification of proteins from complete genomes
33. On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies
34. ATV: Display and manipulation of annotated phylogenetic trees