An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

Nature Biotechnology

Volumn 20, Issue 8, 2002, Pages 835-839

  Shirley Liu, X ^a   Brutlag, Douglas L ^a   Liu, Jun S ^b  

^a STANFORD UNIVERSITY   (United States)

^b HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTATIONAL METHODS; DNA; GENES; PROTEINS;

MOTIF DISCOVERY SCAN;

BIOTECHNOLOGY;

COMPLEMENTARY DNA; RAP PROTEIN; DNA; DNA BINDING PROTEIN; RAP1 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; TELOMERE BINDING PROTEIN; TRANSCRIPTION FACTOR;

ACCURACY; ALGORITHM; ANALYTIC METHOD; ARTICLE; BINDING SITE; CHROMATIN STRUCTURE; DNA HYBRIDIZATION; DNA MICROARRAY; DNA SEQUENCE; IMMUNOPRECIPITATION; PREDICTION; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN MOTIF; TRANSCRIPTION REGULATION; BIOLOGY; CHROMATIN; COMPUTER PROGRAM; DNA RESPONSIVE ELEMENT; FUNGAL GENE; GENE EXPRESSION REGULATION; GENETICS; INTERNET; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SENSITIVITY AND SPECIFICITY; SERODIAGNOSIS; TELOMERE; TIME;

ALGORITHMS; BASE SEQUENCE; BINDING SITES; CHROMATIN; COMPUTATIONAL BIOLOGY; DNA; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION; GENES, FUNGAL; INTERNET; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRECIPITIN TESTS; PROTEIN BINDING; RESPONSE ELEMENTS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SENSITIVITY AND SPECIFICITY; SOFTWARE; SUPPORT, U.S. GOV'T, NON-P.H.S.; SUPPORT, U.S. GOV'T, P.H.S.; TELOMERE; TELOMERE-BINDING PROTEINS; TIME FACTORS; TRANSCRIPTION FACTORS;

EID: 0036324753     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt717     Document Type: Article

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