메뉴 건너뛰기




Volumn 12, Issue 1, 2003, Pages 1-77

Resampling-based multiple testing for microarray data analysis

Author keywords

Adjusted p value; False discovery rate; Family wise error rate; Fast algorithm; Microarray; MinP; Multiple testing

Indexed keywords


EID: 0041530047     PISSN: 11330686     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02595811     Document Type: Review
Times cited : (399)

References (60)
  • 2
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • ALON, U., BARKAI, N., NOTTERMAN, D. A., GISH, K., YBARRA, S., MACK, D., and LEVINE, A. J. (1999). Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proceedings of the National Academy of Sciences, 96:6745-6750.
    • (1999) Proceedings of the National Academy of Sciences , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 3
    • 0037004138 scopus 로고    scopus 로고
    • John W. Tukey's contriubtions to multiple comparisons
    • BENJAMINI, Y. and BRAUN, H. (2002). John W. Tukey's contriubtions to multiple comparisons. The Annals of Statistics, 30(6): 1576-1594.
    • (2002) The Annals of Statistics , vol.30 , Issue.6 , pp. 1576-1594
    • Benjamini, Y.1    Braun, H.2
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • BENJAMINI, Y. and HOCHBERG, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B, 57:289-300.
    • (1995) Journal of the Royal Statistical Society, Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 0034370950 scopus 로고    scopus 로고
    • The adaptive control of the false discovery rate in multiple hypotheses testing with independent statistics
    • BENJAMINI, Y. and HOCHBERG, Y. (2000). The adaptive control of the false discovery rate in multiple hypotheses testing with independent statistics. Journal of Educational and Behavioral Statistics, 25(1):60-83.
    • (2000) Journal of Educational and Behavioral Statistics , vol.25 , Issue.1 , pp. 60-83
    • Benjamini, Y.1    Hochberg, Y.2
  • 6
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple hypothesis testing under dependency
    • BENJAMINI, Y. and YEKUTIELI, D. (2001). The control of the false discovery rate in multiple hypothesis testing under dependency. The Annals of Statistics, 29(4):1165-1188.
    • (2001) The Annals of Statistics , vol.29 , Issue.4 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 8
    • 0002875582 scopus 로고
    • Multiple comparisons, multiple tests, and data dredging: A bayesian perspective
    • J. Bernardo, M. DeGroot, D. Lindley, and A. Smith, eds., Oxford Univeristy Press
    • BERRY, D. (1988). Multiple comparisons, multiple tests, and data dredging: A bayesian perspective. In J. Bernardo, M. DeGroot, D. Lindley, and A. Smith, eds., Bayesian Statistics, vol. 3. pp. 79-94. Oxford Univeristy Press.
    • (1988) Bayesian Statistics , vol.3 , pp. 79-94
    • Berry, D.1
  • 11
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in HDL deficient mice
    • CALLOW, M. J., DUDOIT, S., GONG, E. L., SPEED, T. P., and RUBIN, E. M. (2000). Microarray expression profiling identifies genes with altered expression in HDL deficient mice. Genome Research, 10(12):2022-2029.
    • (2000) Genome Research , vol.10 , Issue.12 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5
  • 12
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DERISI, J. L., IYER, V. R., and BROWN, P. O. (1997). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278:680-685.
    • (1997) Science , vol.278 , pp. 680-685
    • Derisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 13
    • 0003477662 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • Submitted, available UC Berkeley
    • DUDOIT, S., SHAFFER, J. P., and BOLDRICK, J. C. (2002a). Multiple hypothesis testing in microarray experiments. Submitted, available UC Berkeley, Division Biostatistics working paper series: 2002-110, http://www.bepress.com/ucbbiostat/paper110.
    • (2002) Division Biostatistics Working Paper Series , vol.2002 , Issue.110
    • Dudoit, S.1    Shaffer, J.P.2    Boldrick, J.C.3
  • 14
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • DUDOIT, S., YANG, Y. H., CALLOW, M. J., and SPEED, T. P. (2002b). Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica, 12(1):111-139.
    • (2002) Statistica Sinica , vol.12 , Issue.1 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.P.4
  • 15
    • 0001532846 scopus 로고
    • Estimation of the means of dependent variables
    • DUNN. O. J. (1958). Estimation of the means of dependent variables. The Annals of Mathematical Statistics, 29:1095-1111.
    • (1958) The Annals of Mathematical Statistics , vol.29 , pp. 1095-1111
    • Dunn, O.J.1
  • 16
    • 0035992248 scopus 로고    scopus 로고
    • Empirical Bayes methods and false discovery rates for microarrays
    • EFRON, B. and TIBSHIRANI, R. (2002). Empirical Bayes methods and false discovery rates for microarrays. Genetic Epidemiology, 23:70-86.
    • (2002) Genetic Epidemiology , vol.23 , pp. 70-86
    • Efron, B.1    Tibshirani, R.2
  • 19
    • 0040970668 scopus 로고    scopus 로고
    • On the false discovery rate and expected type I errors
    • FINNER, H. and ROTERS, M. (2001). On the false discovery rate and expected type I errors. Biometrical Journal, 8:985-1005.
    • (2001) Biometrical Journal , vol.8 , pp. 985-1005
    • Finner, H.1    Roters, M.2
  • 22
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • HOLM, S. (1979). A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics, 6:65-70.
    • (1979) Scandinavian Journal of Statistics , vol.6 , pp. 65-70
    • Holm, S.1
  • 24
    • 0010753151 scopus 로고
    • Association and probability inequalities
    • JOGDEO, K. (1977). Association and probability inequalities. Annals of Statistics, 5(3):495-504.
    • (1977) Annals of Statistics , vol.5 , Issue.3 , pp. 495-504
    • Jogdeo, K.1
  • 26
  • 30
    • 0033747889 scopus 로고    scopus 로고
    • Generation of patterns from gene expression data by assigning confidence to differentially expressed genes
    • MANDUCHI, E., GRANT. G. R., McKENZIE, S. E., OVERTON, G. C., SURREY, S., and STOECKERT JR, C. J. (2000). Generation of patterns from gene expression data by assigning confidence to differentially expressed genes. Bioinformatics, 16:685-698.
    • (2000) Bioinformatics , vol.16 , pp. 685-698
    • Manduchi, E.1    Grant, G.R.2    McKenzie, S.E.3    Overton, G.C.4    Surrey, S.5    Stoeckert C.J., Jr.6
  • 31
    • 0017146303 scopus 로고
    • On closed testing procedures with special reference to ordered analysis of variance
    • MARCUS, R., PERITZ, E., and GABRIEL, K. R. (1976). On closed testing procedures with special reference to ordered analysis of variance. Biometrics, 63:655-660.
    • (1976) Biometrics , vol.63 , pp. 655-660
    • Marcus, R.1    Peritz, E.2    Gabriel, K.R.3
  • 32
    • 0043048571 scopus 로고
    • Sequential the tests for detection of linkage
    • MORTON, N. E. (1955). Sequential the tests for detection of linkage. American Journal of Human Genetics, 7:277-318.
    • (1955) American Journal of Human Genetics , vol.7 , pp. 277-318
    • Morton, N.E.1
  • 37
    • 0141498447 scopus 로고    scopus 로고
    • Resampling-based methods for identification of significant subsets of genes in expression data
    • Working Paper 121
    • POLLARD, K. and VAN DER LAAN, M. (2002). Resampling-based methods for identification of significant subsets of genes in expression data. U. C. Berkeley Division of Biostatistics Working Paper Series. Working Paper 121, http://www.bepress.com/ucbbiostat.
    • (2002) U. C. Berkeley Division of Biostatistics Working Paper Series
    • Pollard, K.1    Van der Laan, M.2
  • 41
    • 0039719435 scopus 로고
    • A note on a method for the analysis of significance en masse
    • SEEGER, P. (1968). A note on a method for the analysis of significance en masse. Technometrics, 10(3):586-593.
    • (1968) Technometrics , vol.10 , Issue.3 , pp. 586-593
    • Seeger, P.1
  • 42
    • 11944262819 scopus 로고
    • Multiple hypothesis testing
    • SHAFFER, J. P. (1995). Multiple hypothesis testing. Annu. Rev. Psychol., 46:561-584.
    • (1995) Annu. Rev. Psychol. , vol.46 , pp. 561-584
    • Shaffer, J.P.1
  • 43
    • 84947402121 scopus 로고
    • Rectangular confidence regions for the means of multivariate normal distributions
    • ŠIDÁK, Z. (1967). Rectangular confidence regions for the means of multivariate normal distributions. Journal of the American Statistical Association, 62:626-633.
    • (1967) Journal of the American Statistical Association , vol.62 , pp. 626-633
    • Šidák, Z.1
  • 44
    • 67649345185 scopus 로고
    • An improved Bonferroni procedure for multiple tests of significance
    • SIMES, R. J. (1986). An improved Bonferroni procedure for multiple tests of significance. Biometrika, 73(3):751-754.
    • (1986) Biometrika , vol.73 , Issue.3 , pp. 751-754
    • Simes, R.J.1
  • 45
    • 0000453490 scopus 로고
    • Statistical "discoveries" and effect-size estimation
    • SORIĆ, B. (1989). Statistical "discoveries" and effect-size estimation. Journal of the American Statistical Association, 84(406):608-610.
    • (1989) Journal of the American Statistical Association , vol.84 , Issue.406 , pp. 608-610
    • Sorić, B.1
  • 46
    • 0043288932 scopus 로고    scopus 로고
    • The positive false discovery rate: A Bayesian interpretation and the q-value
    • In press
    • STOREY, J. D. (2001). The positive false discovery rate: A Bayesian interpretation and the q-value. Annals of Statistics. In press.
    • (2001) Annals of Statistics
    • Storey, J.D.1
  • 49
    • 0042787875 scopus 로고    scopus 로고
    • Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: A unified approach
    • In press
    • STOREY, J. D., TAYLOR, J. E., and SIEGMUND, D. (2002). Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: A unified approach. Journal of the Royal Statistical Society, Series B. In press.
    • (2002) Journal of the Royal Statistical Society, Series B.
    • Storey, J.D.1    Taylor, J.E.2    Siegmund, D.3
  • 52
    • 0000576729 scopus 로고
    • The significance of the difference between two means when the population variances are unequal
    • WELCH, B. L. (1938). The significance of the difference between two means when the population variances are unequal. Biometrika, 29:350-362.
    • (1938) Biometrika , vol.29 , pp. 350-362
    • Welch, B.L.1
  • 53
    • 0032582080 scopus 로고    scopus 로고
    • Using prior information to allocate significance levels for multiple endpoints
    • WESTFALL, P., KRISHEN, A., and YOUNG, S. (1998). Using prior information to allocate significance levels for multiple endpoints. Statistics in Medicine, 17:2107-2119.
    • (1998) Statistics in Medicine , vol.17 , pp. 2107-2119
    • Westfall, P.1    Krishen, A.2    Young, S.3
  • 60
    • 0033472709 scopus 로고    scopus 로고
    • Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics
    • YEKUTIELI, D. and BENJAMINI, Y. (1999). Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics. Journal of Statistical Planning and Inference, 82:171-196.
    • (1999) Journal of Statistical Planning and Inference , vol.82 , pp. 171-196
    • Yekutieli, D.1    Benjamini, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.