-
1
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon,U., Barkai,N., Notterman,D.A., Gish,K., Ybarra,S., Mack,D. and Levine,A.J. (1999) Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl Acad. Sci., USA, 96, 6745-6750.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
2
-
-
0035687492
-
Identifying differentially expressed genes in cDNA microarray experiments
-
Baggerly,K.A., Coombes,K.R., Hess,K.R., Stivers,D.N., Abruzzo,L.V. and Zhang,W. (2001) Identifying differentially expressed genes in cDNA microarray experiments. J. Comput. Biol., 8, 639-659.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 639-659
-
-
Baggerly, K.A.1
Coombes, K.R.2
Hess, K.R.3
Stivers, D.N.4
Abruzzo, L.V.5
Zhang, W.6
-
3
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B, 57, 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
5
-
-
0035939903
-
Delineation of prognostic biomarkers in prostate cancer
-
Dhanasekaran,S.M., Barrette,T.R., Ghosh,D., Shah,R., Varambally,S., Kurachi,K., Pienta,K.J., Rubin,M.A. and Chinnaiyan,A.M. (2001) Delineation of prognostic biomarkers in prostate cancer. Nature, 412, 822-826.
-
(2001)
Nature
, vol.412
, pp. 822-826
-
-
Dhanasekaran, S.M.1
Barrette, T.R.2
Ghosh, D.3
Shah, R.4
Varambally, S.5
Kurachi, K.6
Pienta, K.J.7
Rubin, M.A.8
Chinnaiyan, A.M.9
-
6
-
-
0001244941
-
Estimation of finite mixture distributions through Bayesian sampling
-
Diebolt,J. and Robert,C.P. (1994) Estimation of finite mixture distributions through Bayesian sampling. J. R. Stat. Soc. Ser. B, 56, 363-375.
-
(1994)
J. R. Stat. Soc. Ser. B
, vol.56
, pp. 363-375
-
-
Diebolt, J.1
Robert, C.P.2
-
7
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit,S., Yang,Y.H., Callow,M.J. and Speed,T.P. (2002) Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica, 12, 111-140.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-140
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
8
-
-
1542784653
-
Empirical Bayes analysis of a microarray experiment
-
Efron,B., Tibshirani,R., Storey,J.D. and Tusher,V. (2001) Empirical Bayes analysis of a microarray experiment. J. Am. Stat. Assoc., 96, 1151-1160.
-
(2001)
J. Am. Stat. Assoc.
, vol.96
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.D.3
Tusher, V.4
-
9
-
-
0033816482
-
Laser capture microdissection in pathology
-
Fend,F. and Raffeld,M. (2000) Laser capture microdissection in pathology. J. Clin. Pathol., 53, 666-672.
-
(2000)
J. Clin. Pathol.
, vol.53
, pp. 666-672
-
-
Fend, F.1
Raffeld, M.2
-
10
-
-
4444302026
-
Mixture models for assessing differential expression in complex tissues using microarray data
-
Technical Report, Department of Biostatistics, University of Michigan
-
Ghosh,D. (2003) Mixture models for assessing differential expression in complex tissues using microarray data. Technical Report, Department of Biostatistics, University of Michigan.
-
(2003)
-
-
Ghosh, D.1
-
11
-
-
0036188158
-
Mixture modelling of gene expression data from microarray experiments
-
Ghosh,D. and Chinnaiyan,A.M. (2002) Mixture modelling of gene expression data from microarray experiments. Bioinformatics, 18, 275-286.
-
(2002)
Bioinformatics
, vol.18
, pp. 275-286
-
-
Ghosh, D.1
Chinnaiyan, A.M.2
-
12
-
-
0036489048
-
Bayesian models for gene expression with DNA microarray data
-
Ibrahim,J.G., Chen,M.-H. and Gray,R.J. (2002) Bayesian models for gene expression with DNA microarray data. J. Am. Stat. Assoc., 97, 88-99.
-
(2002)
J. Am. Stat. Assoc.
, vol.97
, pp. 88-99
-
-
Ibrahim, J.G.1
Chen, M.-H.2
Gray, R.J.3
-
13
-
-
0034921979
-
Testing for differentially expressed genes by maximum likelihood analysis of microarray data
-
Ideker,T., Thorsson,V., Siegel,A.F. and Hood,L. (2000) Testing for differentially expressed genes by maximum likelihood analysis of microarray data. J. Comput. Biol., 7, 805-817.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 805-817
-
-
Ideker, T.1
Thorsson, V.2
Siegel, A.F.3
Hood, L.4
-
14
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka,R. and Gentleman,R. (1996) R: a language for data analysis and graphics. J. Comput. Graph. Stat., 5, 299-314.
-
(1996)
J. Comput. Graph. Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
15
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan,J., Wei,J.S., Ringner,M., Saal,L.H., Ladanyi,M., Westermann,F., Berthold,F., Schwab,M., Antonescu,C.R., Peterson,C. and Meltzer,P.S. (2001) Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat. Med., 7, 673-679.
-
(2001)
Nat. Med.
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, P.S.11
-
16
-
-
84950441032
-
Robust statistical modeling using the t distribution
-
Lange,K.L., Little,R.J.A. and Taylor,J.M.G. (1989) Robust statistical modeling using the t distribution. J. Am. Stat. Assoc., 84, 881-896.
-
(1989)
J. Am. Stat. Assoc.
, vol.84
, pp. 881-896
-
-
Lange, K.L.1
Little, R.J.A.2
Taylor, J.M.G.3
-
18
-
-
0035874995
-
Human prostate cancer and benign prostatic hyperplasia: Molecular dissection by gene expression profiling
-
Luo,J., Duggan,D.J., Chen,Y., Sauvageot,J., Ewing,C.M., Bittner,M.L., Trent,J.M. and Isaacs,W.B. (2001) Human prostate cancer and benign prostatic hyperplasia: molecular dissection by gene expression profiling. Cancer Res., 61, 4683-4688.
-
(2001)
Cancer Res.
, vol.61
, pp. 4683-4688
-
-
Luo, J.1
Duggan, D.J.2
Chen, Y.3
Sauvageot, J.4
Ewing, C.M.5
Bittner, M.L.6
Trent, J.M.7
Isaacs, W.B.8
-
21
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton,M.A., Kendziorski,C.M., Richmond,C.S., Blattner,F.R. and Tsui,K.W. (2001) On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Comput. Biol., 8, 37-52.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
22
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan,W. (2002) A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 12, 546-554.
-
(2002)
Bioinformatics
, vol.12
, pp. 546-554
-
-
Pan, W.1
-
23
-
-
0036433548
-
A statistical framework for molecular-based classification in cancer
-
Parmigiani,G., Garrett,E.S., Anbazhagan,R. and Gabrielson,E. (2002) A statistical framework for molecular-based classification in cancer. J. R. Stat. Soc. Ser. B, 64, 717-736.
-
(2002)
J. R. Stat. Soc. Ser. B
, vol.64
, pp. 717-736
-
-
Parmigiani, G.1
Garrett, E.S.2
Anbazhagan, R.3
Gabrielson, E.4
-
25
-
-
0038103843
-
DNA microarrays for comparison of gene expression profiles between diagnosis and relapse in precursor-B acute lymphoblastic leukemia: Choice of technique and purification influence the identification of potential diagnostic markers
-
Staal,F.J., van der Burg,M., Wessels,L.F., Barendregt,B.H., Baert,M.R., van den Burg,C.M., van Huffel,C., Langerak,A.W., van der Velden,V.H., Reinders,M.J. and van Dongen,J.J. (2003) DNA microarrays for comparison of gene expression profiles between diagnosis and relapse in precursor-B acute lymphoblastic leukemia: choice of technique and purification influence the identification of potential diagnostic markers. Leukemia, 17, 1324-1332.
-
(2003)
Leukemia
, vol.17
, pp. 1324-1332
-
-
Staal, F.J.1
van der Burg, M.2
Wessels, L.F.3
Barendregt, B.H.4
Baert, M.R.5
van den Burg, C.M.6
van Huffel, C.7
Langerak, A.W.8
van der Velden, V.H.9
Reinders, M.J.10
van Dongen, J.J.11
-
26
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey,J.D. (2002) A direct approach to false discovery rates. J. R. Stat. Soc. Ser. B, 64, 479-498.
-
(2002)
J. R. Stat. Soc. Ser. B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
27
-
-
0035224389
-
Separation of samples into their constituents using gene expression data
-
Venet,D., Pecasse,F., Maenhaut,C. and Bersini,H. (2001) Separation of samples into their constituents using gene expression data. Bioinformatics, 17, S279-S287.
-
(2001)
Bioinformatics
, vol.17
-
-
Venet, D.1
Pecasse, F.2
Maenhaut, C.3
Bersini, H.4
|