메뉴 건너뛰기




Volumn 25, Issue 12, 2008, Pages 2689-2698

The apicomplexan whole-genome phylogeny: An analysis of incongruence among gene trees

Author keywords

Apicomplexa; Bootstrap; Genome scale; Long branch attraction; Phylogeny; Taxon sampling

Indexed keywords

APICOMPLEXA; ARTICLE; BABESIA; CRYPTOSPORIDIUM; EIMERIA; GENE STRUCTURE; GENOME; NONHUMAN; PHYLOGENY; PLASMODIUM; PROTOZOAL GENETICS; TETRAHYMENA; THEILERIA; TOXOPLASMA;

EID: 56449101000     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn213     Document Type: Article
Times cited : (98)

References (74)
  • 1
    • 11144353587 scopus 로고    scopus 로고
    • Abrahamsen MS, Templeton TJ, Enomoto S, et al. (20 coauthors). 2004. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Science. 304:441-445.
    • Abrahamsen MS, Templeton TJ, Enomoto S, et al. (20 coauthors). 2004. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Science. 304:441-445.
  • 3
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • Andersson JO. 2005. Lateral gene transfer in eukaryotes. Cell Mol Life Sci. 62:1182-1197.
    • (2005) Cell Mol Life Sci , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 4
    • 0037246674 scopus 로고    scopus 로고
    • Bahl A, Brunk B, Crabtree J, et al. (18 co-authors). 2003. PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res. 31:212-215.
    • Bahl A, Brunk B, Crabtree J, et al. (18 co-authors). 2003. PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res. 31:212-215.
  • 5
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J. 2005. A review of long-branch attraction. Cladistics. 21:163-193.
    • (2005) Cladistics , vol.21 , pp. 163-193
    • Bergsten, J.1
  • 6
    • 36048987965 scopus 로고    scopus 로고
    • Brayton KA, Lau AOT, Herndon DR, et al. (28 co-authors). 2007. Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. PLoS Pathog. 3:e148.
    • Brayton KA, Lau AOT, Herndon DR, et al. (28 co-authors). 2007. Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. PLoS Pathog. 3:e148.
  • 7
    • 0345602796 scopus 로고    scopus 로고
    • Genome sequencing and comparative genomics of tropical disease pathogens
    • Carlton J. 2003. Genome sequencing and comparative genomics of tropical disease pathogens. Cell Microbiol. 5:861-873.
    • (2003) Cell Microbiol , vol.5 , pp. 861-873
    • Carlton, J.1
  • 8
    • 0032882626 scopus 로고    scopus 로고
    • Cryptosporidium is more closely related to the gregarines than to coccidia as shown by phylogenetic analysis of apicomplexan parasites inferred using small-subunit ribosomal RNA gene sequences
    • Carreno RA, Matrin DS, Barta JR. 1999. Cryptosporidium is more closely related to the gregarines than to coccidia as shown by phylogenetic analysis of apicomplexan parasites inferred using small-subunit ribosomal RNA gene sequences. Parasitol Res. 85:899-904.
    • (1999) Parasitol Res , vol.85 , pp. 899-904
    • Carreno, R.A.1    Matrin, D.S.2    Barta, J.R.3
  • 9
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 10
    • 22844439075 scopus 로고    scopus 로고
    • Choosing the best genes for the job: The case for stationary genes in genome-scale phylogenetics
    • Collins TM, Fedrigo O, Naylor GJP. 2005. Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics. Syst Biol. 54:493-500.
    • (2005) Syst Biol , vol.54 , pp. 493-500
    • Collins, T.M.1    Fedrigo, O.2    Naylor, G.J.P.3
  • 11
    • 0036061865 scopus 로고    scopus 로고
    • A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
    • Daubin V, Gouy M, Perriere G. 2002. A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Res. 12:1080-1090.
    • (2002) Genome Res , vol.12 , pp. 1080-1090
    • Daubin, V.1    Gouy, M.2    Perriere, G.3
  • 12
    • 0042027842 scopus 로고    scopus 로고
    • Phylogenetics and the cohesion of bacterial genomes
    • Daubin V, Moran NA, Ochman H. 2003. Phylogenetics and the cohesion of bacterial genomes. Science. 301:829-832.
    • (2003) Science , vol.301 , pp. 829-832
    • Daubin, V.1    Moran, N.A.2    Ochman, H.3
  • 13
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F, Brinkmann H, Philippe H. 2005. Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet. 6:361-375.
    • (2005) Nat Rev Genet , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 14
    • 27844438226 scopus 로고    scopus 로고
    • Genome-scale evidence of the nematode-arthropod clade
    • Dopazo H, Dopazo J. 2005. Genome-scale evidence of the nematode-arthropod clade. Genome Biol. 6:R41.
    • (2005) Genome Biol , vol.6
    • Dopazo, H.1    Dopazo, J.2
  • 15
    • 7444237566 scopus 로고    scopus 로고
    • The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
    • Douzery EJP, Snell EA, Bapteste E, Delsuc F, Philippe H. 2004. The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? Proc Natl Acad Sci USA. 101:15386-15391.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15386-15391
    • Douzery, E.J.P.1    Snell, E.A.2    Bapteste, E.3    Delsuc, F.4    Philippe, H.5
  • 16
    • 33748598232 scopus 로고    scopus 로고
    • Eisen JA, Coyne RS, Wu M, et al. (53 co-authors). 2006. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol. 4:1620-1642.
    • Eisen JA, Coyne RS, Wu M, et al. (53 co-authors). 2006. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol. 4:1620-1642.
  • 17
    • 0028998727 scopus 로고
    • Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes
    • Escalante A, Ayala F. 1995. Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes. Proc Natl Acad Sci USA. 92:5793-5797.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 5793-5797
    • Escalante, A.1    Ayala, F.2
  • 18
    • 56449104678 scopus 로고    scopus 로고
    • Felsenstein J. 1989. PHYLIP, phylogeny inference package version 3.2, Cladistics. 5:164-166
    • Felsenstein J. 1989. PHYLIP - phylogeny inference package (version 3.2). Cladistics. 5:164-166.
  • 19
    • 38549128700 scopus 로고    scopus 로고
    • Gajria B, Bahl A, Brestelli J, et al. (15 co-authors). 2008. ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Res. gkm981. 36:D553-D556.
    • Gajria B, Bahl A, Brestelli J, et al. (15 co-authors). 2008. ToxoDB: an integrated Toxoplasma gondii database resource. Nucleic Acids Res. gkm981. 36:D553-D556.
  • 20
    • 21644437935 scopus 로고    scopus 로고
    • Gardner MJ, Bishop R, Shah T, et al. (44 co-authors). 2005. Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science. 309:134-137.
    • Gardner MJ, Bishop R, Shah T, et al. (44 co-authors). 2005. Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science. 309:134-137.
  • 21
    • 0037015614 scopus 로고    scopus 로고
    • Gardner MJ, Hall N, Fung E, et al. (45 co-authors). 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419:498-511.
    • Gardner MJ, Hall N, Fung E, et al. (45 co-authors). 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419:498-511.
  • 22
    • 22844438847 scopus 로고    scopus 로고
    • Hidden likelihood support in genomic data: Can forty-five wrongsmake a right?
    • Gatesy J, Baker RH. 2005. Hidden likelihood support in genomic data: can forty-five wrongsmake a right? Syst Biol. 54:483-492.
    • (2005) Syst Biol , vol.54 , pp. 483-492
    • Gatesy, J.1    Baker, R.H.2
  • 23
    • 0242268536 scopus 로고    scopus 로고
    • Evolution: Ending incongruence
    • GeeH. 2003. Evolution: ending incongruence. Nature. 425:782-782.
    • (2003) Nature , vol.425 , pp. 782-782
    • GeeH1
  • 24
    • 0037458117 scopus 로고    scopus 로고
    • Gene transfer: Gene swapping craze reaches eukaryotes
    • Gogarten JP. 2003. Gene transfer: gene swapping craze reaches eukaryotes. Curr Biol. 13:R53-R54.
    • (2003) Curr Biol , vol.13
    • Gogarten, J.P.1
  • 25
    • 0038287878 scopus 로고    scopus 로고
    • Data exploration in phylogenetic inference: Scientific, heuristic, or neither
    • Grant T, Kluge AG. 2003. Data exploration in phylogenetic inference: scientific, heuristic, or neither. Cladistics. 19:379-418.
    • (2003) Cladistics , vol.19 , pp. 379-418
    • Grant, T.1    Kluge, A.G.2
  • 26
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 27
    • 33644875511 scopus 로고    scopus 로고
    • Heiges M, Wang HM, Robinson E, et al. (13 co-authors). 2006. CryptoDB: a Cryptosporidium bioinformatics resource update. Nucleic Acids Res. 34:D419-D422.
    • Heiges M, Wang HM, Robinson E, et al. (13 co-authors). 2006. CryptoDB: a Cryptosporidium bioinformatics resource update. Nucleic Acids Res. 34:D419-D422.
  • 28
    • 9144264843 scopus 로고    scopus 로고
    • Hertz-Fowler C, Peacock CS, Wood V, et al. (14 co-authors). 2004. GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32:D339-D343.
    • Hertz-Fowler C, Peacock CS, Wood V, et al. (14 co-authors). 2004. GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32:D339-D343.
  • 29
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol. 42:182-192.
    • (1993) Syst Biol , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 30
    • 21144435581 scopus 로고    scopus 로고
    • Cryptosporidium parvum: Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer
    • Huang J, Mullapudi N, Lancto CA, Scott M, Abrahamsen MS, Kissinger JC. 2004. Cryptosporidium parvum: phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer. Genome Biol. 5:R88.
    • (2004) Genome Biol , vol.5
    • Huang, J.1    Mullapudi, N.2    Lancto, C.A.3    Scott, M.4    Abrahamsen, M.S.5    Kissinger, J.C.6
  • 31
  • 33
    • 33745022802 scopus 로고    scopus 로고
    • Benchmarking ortholog identification methods using functional genomics data
    • Hulsen T, Huynen MA, de Vlieg J, Groenen PMA. 2006. Benchmarking ortholog identification methods using functional genomics data. Genome Biol. 7:R31.
    • (2006) Genome Biol , vol.7
    • Hulsen, T.1    Huynen, M.A.2    de Vlieg, J.3    Groenen, P.M.A.4
  • 35
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 8:275-282.
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 36
    • 42549143433 scopus 로고    scopus 로고
    • Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria
    • Kuo C-H, Kissinger JC. 2008. Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria. BMC Evol Biol. 8:108.
    • (2008) BMC Evol Biol , vol.8 , pp. 108
    • Kuo, C.-H.1    Kissinger, J.C.2
  • 37
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol. 25:1307-1320.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • SQ, L.1    Gascuel, O.2
  • 38
    • 0141511050 scopus 로고    scopus 로고
    • Molecular phylogeny and surface morphology of marine aseptate gregarines (apicomplexa): Selenidium spp. and Lecudina spp
    • Leander BS, Harper JT, Keeling PJ. 2003. Molecular phylogeny and surface morphology of marine aseptate gregarines (apicomplexa): selenidium spp. and Lecudina spp. J Parasitol. 89:1191-1205.
    • (2003) J Parasitol , vol.89 , pp. 1191-1205
    • Leander, B.S.1    Harper, J.T.2    Keeling, P.J.3
  • 39
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-proteobacteria
    • Lerat E, Daubin V, Moran NA. 2003. From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLoS Biol. 1:101-109.
    • (2003) PLoS Biol , vol.1 , pp. 101-109
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 40
    • 0021254141 scopus 로고
    • Taxonomy and review of the coccidian genus Cryptosporidium (Protozoa, Apicomplexa)
    • Levine ND. 1984. Taxonomy and review of the coccidian genus Cryptosporidium (Protozoa, Apicomplexa). J Protozool. 31:94-98.
    • (1984) J Protozool , vol.31 , pp. 94-98
    • Levine, N.D.1
  • 41
    • 0023734723 scopus 로고
    • Progress in taxonomy of the Apicomplexan protozoa
    • Levine ND. 1988. Progress in taxonomy of the Apicomplexan protozoa. J Eukaryot Microbiol. 35:518-520.
    • (1988) J Eukaryot Microbiol , vol.35 , pp. 518-520
    • Levine, N.D.1
  • 42
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 44
    • 0030934592 scopus 로고    scopus 로고
    • Effects of nucleotide sequence alignment on phylogeny estimation: A case study of 18S rDNAs of Apicomplexa
    • Morrison DA, Ellis JT. 1997. Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of Apicomplexa. Mol Biol Evol. 14:428-441.
    • (1997) Mol Biol Evol , vol.14 , pp. 428-441
    • Morrison, D.A.1    Ellis, J.T.2
  • 45
    • 33748079101 scopus 로고    scopus 로고
    • Comparative genomic and phylogenetic analyses of calcium ATPases and calcium-regulated proteins in the Apicomplexa
    • Nagamune K, Sibley LD. 2006. Comparative genomic and phylogenetic analyses of calcium ATPases and calcium-regulated proteins in the Apicomplexa. Mol Biol Evol. 23:1613-1627.
    • (2006) Mol Biol Evol , vol.23 , pp. 1613-1627
    • Nagamune, K.1    Sibley, L.D.2
  • 46
    • 39749188544 scopus 로고    scopus 로고
    • Rooting the eutherian tree: The power and pitfalls of phylogenomics
    • Nishihara H, Okada N, Hasegawa M. 2007. Rooting the eutherian tree: the power and pitfalls of phylogenomics. Genome Biol. 8:R199.
    • (2007) Genome Biol , vol.8
    • Nishihara, H.1    Okada, N.2    Hasegawa, M.3
  • 47
    • 21644452778 scopus 로고    scopus 로고
    • Pain A, Renauld H, Berriman M, et al. (50 co-authors). 2005. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science. 309:131-133.
    • Pain A, Renauld H, Berriman M, et al. (50 co-authors). 2005. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science. 309:131-133.
  • 50
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
    • Philippe H, Lartillot N, Brinkmann H. 2005. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol Biol Evol. 22:1246-1253.
    • (2005) Mol Biol Evol , vol.22 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 52
    • 3042550872 scopus 로고    scopus 로고
    • Genome-scale phylogeny and the detection of systematic biases
    • Phillips MJ, Delsuc FD, Penny D. 2004. Genome-scale phylogeny and the detection of systematic biases. Mol Biol Evol. 21:1455-1458.
    • (2004) Mol Biol Evol , vol.21 , pp. 1455-1458
    • Phillips, M.J.1    Delsuc, F.D.2    Penny, D.3
  • 53
    • 33750437728 scopus 로고    scopus 로고
    • Widespread discordance of gene trees with species tree in Drosophila: Evidence for incomplete lineage sorting
    • Pollard DA, Iyer VN, Moses AM, Eisen MB. 2006. Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet. 2:1634-1647.
    • (2006) PLoS Genet , vol.2 , pp. 1634-1647
    • Pollard, D.A.1    Iyer, V.N.2    Moses, A.M.3    Eisen, M.B.4
  • 54
    • 0037838657 scopus 로고    scopus 로고
    • Horizontal gene transfer and the evolution of parasitic protozoa
    • Richards TA, Hirt RP, Williams BAP, Embley TM. 2003. Horizontal gene transfer and the evolution of parasitic protozoa. Protist. 154:17-32.
    • (2003) Protist , vol.154 , pp. 17-32
    • Richards, T.A.1    Hirt, R.P.2    Williams, B.A.P.3    Embley, T.M.4
  • 55
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson DF, Foulds LR. 1981. Comparison of phylogenetic trees. Math Biosci. 53:131-147.
    • (1981) Math Biosci , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 56
    • 33847656285 scopus 로고    scopus 로고
    • Rodriguez-Ezpeleta N, Brinkmann H, Roure eacute atrice B, Lartillot N, Lang BF, Philippe H. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst Biol. 56:389-399.
    • Rodriguez-Ezpeleta N, Brinkmann H, Roure eacute atrice B, Lartillot N, Lang BF, Philippe H. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst Biol. 56:389-399.
  • 57
    • 33749334992 scopus 로고    scopus 로고
    • Genomics and the tree of life
    • Rokas A. 2006. Genomics and the tree of life. Science. 313:1897-1899.
    • (2006) Science , vol.313 , pp. 1897-1899
    • Rokas, A.1
  • 58
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A, Williams BL, King N, Carroll SB. 2003. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature. 425:798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 59
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 60
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst Biol. 51:492-508.
    • (2002) Syst Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 61
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol. 16:1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 62
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics. 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 63
    • 0029433162 scopus 로고
    • Another monophyly index: Revisiting the jackknife
    • Siddall ME. 1995. Another monophyly index: revisiting the jackknife. Cladistics. 11:33-56.
    • (1995) Cladistics , vol.11 , pp. 33-56
    • Siddall, M.E.1
  • 64
    • 4644350604 scopus 로고    scopus 로고
    • Soltis DE, Albert VA, Savolainen V, et al. (11 co-authors). 2004. Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics. Trends Plant Sci. 9:477-483.
    • Soltis DE, Albert VA, Savolainen V, et al. (11 co-authors). 2004. Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics. Trends Plant Sci. 9:477-483.
  • 66
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34:W609-W612.
    • (2006) Nucleic Acids Res , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 67
    • 0035424974 scopus 로고    scopus 로고
    • Parasite genomics: Current status and future prospects
    • Tarleton RL, Kissinger J. 2001. Parasite genomics: current status and future prospects. Curr Opin Immunol. 13:395-402.
    • (2001) Curr Opin Immunol , vol.13 , pp. 395-402
    • Tarleton, R.L.1    Kissinger, J.2
  • 68
    • 3242795999 scopus 로고    scopus 로고
    • An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data
    • Taylor DJ, Piel WH. 2004. An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data. Mol Biol Evol. 21:1534-1537.
    • (2004) Mol Biol Evol , vol.21 , pp. 1534-1537
    • Taylor, D.J.1    Piel, W.H.2
  • 69
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 71
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 18:691-699.
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 72
    • 56449109731 scopus 로고    scopus 로고
    • WHO and UNICEF. 2005. World malaria report 2005. Geneva (Switzerland): World Health Organization.
    • WHO and UNICEF. 2005. World malaria report 2005. Geneva (Switzerland): World Health Organization.
  • 73
    • 7744238311 scopus 로고    scopus 로고
    • Xu P, Widmer G, Wang Y, et al. (18 co-authors). 2004. The genome of Cryptosporidium hominis. Nature. 431:1107-1112.
    • Xu P, Widmer G, Wang Y, et al. (18 co-authors). 2004. The genome of Cryptosporidium hominis. Nature. 431:1107-1112.
  • 74
    • 0033853278 scopus 로고    scopus 로고
    • What is the phylogenetic position of Cryptosporidium?
    • Zhu G, Keithly JS, Philippe H. 2000. What is the phylogenetic position of Cryptosporidium? Int J Syst Evol Microbiol. 50:1673-1681.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1673-1681
    • Zhu, G.1    Keithly, J.S.2    Philippe, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.