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Volumn 20, Issue 16, 2004, Pages 2626-2635

A statistical framework for genomic data fusion

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN; RIBOSOME PROTEIN;

EID: 8844263749     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth294     Document Type: Article
Times cited : (563)

References (36)
  • 3
    • 0011812771 scopus 로고    scopus 로고
    • Kernel independent component analysis
    • Bach,F. and Jordan,M.I. (2002) Kernel independent component analysis. J. Mach. Learning Res., 3, 1-48.
    • (2002) J. Mach. Learning Res. , vol.3 , pp. 1-48
    • Bach, F.1    Jordan, M.I.2
  • 5
    • 0026069154 scopus 로고
    • Development of hydrophobicity parameters to analyze proteins which bear post- or cotranslational modifications
    • Black,S.D. and Mould,D.R. (1991) Development of hydrophobicity parameters to analyze proteins which bear post- or cotranslational modifications. Anal. Biochem., 193, 72-82.
    • (1991) Anal. Biochem. , vol.193 , pp. 72-82
    • Black, S.D.1    Mould, D.R.2
  • 6
    • 0026966646 scopus 로고
    • A training algorithm for optimal margin classifiers
    • ACM Press, NY
    • Boser,B.E., Guyon,I. and Vapnik,V. (1992) A training algorithm for optimal margin classifiers. Computational Learing Theory ACM Press, NY, pp. 144-152.
    • (1992) Computational Learing Theory , pp. 144-152
    • Boser, B.E.1    Guyon, I.2    Vapnik, V.3
  • 8
    • 0001911218 scopus 로고    scopus 로고
    • State-of-the-art in membrane protein prediction
    • Chen,C. and Rost,B. (2002) State-of-the-art in membrane protein prediction. Appl. Bioinform., 1, 21-35.
    • (2002) Appl. Bioinform. , vol.1 , pp. 21-35
    • Chen, C.1    Rost, B.2
  • 10
    • 0022510143 scopus 로고
    • Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
    • Engleman,D.M., Steitz,T.A. and Goldman,A. (1986) Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Ann. Rev. Biophys. Biophys. Chem., 15, 321-353.
    • (1986) Ann. Rev. Biophys. Biophys. Chem. , vol.15 , pp. 321-353
    • Engleman, D.M.1    Steitz, T.A.2    Goldman, A.3
  • 11
    • 0041494125 scopus 로고    scopus 로고
    • Efficient SVM training using low-rank kernel representations
    • Fine,S. and Scheinberg,K. (2001) Efficient SVM training using low-rank kernel representations. J. Mach. Learning Res., 2, 243-264.
    • (2001) J. Mach. Learning Res. , vol.2 , pp. 243-264
    • Fine, S.1    Scheinberg, K.2
  • 12
    • 0001969211 scopus 로고    scopus 로고
    • Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
    • Gribskov,M. and Robinson,N.L. (1996) Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput. Chem., 20, 25-33.
    • (1996) Comput. Chem. , vol.20 , pp. 25-33
    • Gribskov, M.1    Robinson, N.L.2
  • 13
    • 0024462319 scopus 로고
    • cDNA sequence coding for a translationally controlled human tumor protein
    • Gross,G., Gaestel,M., Bohm,H. and Bielka,H. (1989) cDNA sequence coding for a translationally controlled human tumor protein. Nucleic Acids Res., 17, 8367.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 8367
    • Gross, G.1    Gaestel, M.2    Bohm, H.3    Bielka, H.4
  • 14
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • Hanley,J.A. and McNeil,B.J. (1982) The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143, 29-36.
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 16
    • 0000448982 scopus 로고
    • Prediction of protein antigenic determinants from amino acid sequences
    • Hopp,T.P. and Woods,K.R. (1981) Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl Acad. Sci., USA, 78, 3824-3828.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 3824-3828
    • Hopp, T.P.1    Woods, K.R.2
  • 17
    • 0041775676 scopus 로고    scopus 로고
    • Diffusion kernels on graphs and other discrete input spaces
    • Sammut,C. and Hoffmann,A. (eds), Morgan Kaufmann, San Francisco, CA
    • Kondor,R.I. and Lafferty,J. (2002) Diffusion kernels on graphs and other discrete input spaces. In Sammut,C. and Hoffmann,A. (eds), Proceedings of the International Conference on Machine Learning Morgan Kaufmann, San Francisco, CA, pp. 315-322.
    • (2002) Proceedings of the International Conference on Machine Learning , pp. 315-322
    • Kondor, R.I.1    Lafferty, J.2
  • 18
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh,A., Larsson,B., von Heijne,G. and Sonnhammer,E.L.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol., 305, 567-580.
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.L.4
  • 19
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte,J. and Doolittle,R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105-132.
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 24
    • 1542559402 scopus 로고    scopus 로고
    • Support vector machine applications in computational biology
    • Schoekkopf,B., Tsuda,K. and Vert,J.-P. (eds), MIT Press, Cambridge, MA
    • Noble,W.S. (2004) Support vector machine applications in computational biology. In Schoekkopf,B., Tsuda,K. and Vert,J.-P. (eds), Kernel Methods in Computational Biology, MIT Press, Cambridge, MA, pp. 71-92.
    • (2004) Kernel Methods in Computational Biology , pp. 71-92
    • Noble, W.S.1
  • 27
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 28
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer,E., Eddy,S. and Durbin,R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.1    Eddy, S.2    Durbin, R.3
  • 29
    • 0142032204 scopus 로고    scopus 로고
    • Support vector classification with asymmetric kernel function
    • Verleysen,M. (ed.)
    • Tsuda,K. (1999) Support vector classification with asymmetric kernel function. In Verleysen,M. (ed.), Proceedings ESANN, pp. 183-188.
    • (1999) Proceedings ESANN , pp. 183-188
    • Tsuda, K.1
  • 30
    • 0030106462 scopus 로고    scopus 로고
    • Semidefinite programming
    • Vandenberghe,L. and Boyd,S. (1996) Semidefinite programming. SIAM Rev., 38, 49-95.
    • (1996) SIAM Rev. , vol.38 , pp. 49-95
    • Vandenberghe, L.1    Boyd, S.2
  • 33
    • 84899021874 scopus 로고    scopus 로고
    • Graph-driven features extraction from microarray data using diffusion kernels and kernel CCA
    • Becker,S., Thrun,S. and Obermayer,K. (eds), MIT Press, Cambridge, MA
    • Vert,J.-P. and Kanehisa,M. (2003) Graph-driven features extraction from microarray data using diffusion kernels and kernel CCA. In Becker,S., Thrun,S. and Obermayer,K. (eds), Advances in Neural Information Processing Systems 15, MIT Press, Cambridge, MA, pp. 1425-1432.
    • (2003) Advances in Neural Information Processing Systems 15 , pp. 1425-1432
    • Vert, J.-P.1    Kanehisa, M.2
  • 34
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale datasets of protein-protein interactions
    • von Mering,C., Krause,R., Snel,B., Cornell,M., Olivier,S.G., Fields,S. and Bork,P. (2002) Comparative assessment of large-scale datasets of protein-protein interactions. Nature, 417, 399-403.
    • (2002) Nature , vol.417 , pp. 399-403
    • von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Olivier, S.G.5    Fields, S.6    Bork, P.7


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