Comparative assessment of large-scale data sets of protein-protein interactions

Nature

Volumn 417, Issue 6887, 2002, Pages 399-403

  von Mering, Christian ^a   Krause, Roland ^b   Snel, Berend ^a   Cornell, Michael ^a,c   Oliver, Stephen G ^c   Fields, Stanley ^d   Bork, Peer ^a,d  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b GLAXOSMITHKLINE   (United Kingdom)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

^d UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; LARGE SCALE SYSTEMS; YEAST;

PROTEIN INTERACTION;

PROTEINS;

PROTEIN;

ARTICLE; CELL FUNCTION; GENE EXPRESSION; GENOME; INTERMETHOD COMPARISON; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; YEAST;

BIAS (EPIDEMIOLOGY); DATABASES, FACTUAL; FALSE POSITIVE REACTIONS; FUNGAL PROTEINS; MASS SPECTROMETRY; PROTEIN BINDING; PROTEINS; REFERENCE STANDARDS; RNA, MESSENGER; SENSITIVITY AND SPECIFICITY; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 0037161731     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature750     Document Type: Article

References (44)

1. The Ensembl genome database project
2. GenBank
3. From genome to proteome: Looking at a cell's proteins
4. Towards an understanding of complex protein networks
5. Molecular complexity and dynamics of cell-matrix adhesions
6. A biological atlas of functional maps
7. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
8. A comprehensive two-hybrid analysis to explore the yeast protein interactome
9. Systematic genetic analysis with ordered arrays of yeast deletion mutants
10. Functional organization of the yeast proteome by systematic analysis of protein complexes
11. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
12. A combined algorithm for genome-wide prediction of protein function
13. Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences
14. The use of gene clusters to infer functional coupling
15. A genome-wide transcriptional analysis of the mitotic cell cycle
16. Functional discovery via a compendium of expression profiles
17. MIPS: A database for genomes and protein sequences
18. Protein interaction maps for complete genomes based on gene fusion events
19. Detecting protein function and protein-protein interactions from genome sequences
20. Conservation of gene order: A fingerprint of proteins that physically interact
21. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
22. Measuring genome evolution
23. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
24. YPD, PombePD and WormPD: Model organism volumes of the BioKnowledge library, an integrated resource for protein information
25. Regulation of the balance of one-carbon metabolism in Saccharomyces cerevisiae
26. Genetics of the synthesis of serine from glycine and the utilization of glycine as sole nitrogen source by Saccharomyces cerevisiae
27. The glycine decarboxylase system: A fascinating complex
28. The Saccharomyces cerevisiae gene PPH3 encodes a protein phosphatase with properties different from PPX, PP1 and PP2A
29. Protein phosphatase methyltransferase 1 (Ppm1p) is the sole activity responsible for modification of the major forms of protein phosphatase 2A in yeast
30. Proteomics. Integrating interactomes
31. Correlation between protein and mRNA abundance in yeast
32. Dissecting the regulatory circuitry of a eukaryotic genome
33. Is there a bias in proteome research?
34. Global analysis of protein activities using proteome chips
35. Solution and chip arrays in protein profiling
36. DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
37. Predictome: A database of putative functional links between proteins
38. BIND-The Biomolecular Interaction Network Database
39. Conceptual modelling of genomic information
40. Subcellular localization of the yeast proteome
41. A novel genetic system to detect protein-protein interactions
42. Guilt-by-association goes global
43. A generic protein purification method for protein complex characterization and proteome exploration
44. Analysis of proteins and proteomes by mass spectrometry