Network component analysis: Reconstruction of regulatory signals in biological systems

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 26, 2003, Pages 15522-15527

  Liao, James C ^a   Boscolo, Riccardo ^a   Yang, Young Lyeol ^a   Tran, Linh My ^a   Sabatti, Chiara ^a   Roychowdhury, Vwani P ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; BIOLOGY; CELL CYCLE; DECOMPOSITION; DNA MICROARRAY; MATHEMATICAL ANALYSIS; NETWORK COMPONENT ANALYSIS; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SIGNAL PROCESSING; SPECTROMETRY; STATISTICAL ANALYSIS; TRANSCRIPTION REGULATION; VALIDATION PROCESS;

BIOLOGY; GENE EXPRESSION REGULATION; HEMOGLOBINS; IMAGE PROCESSING, COMPUTER-ASSISTED; MODELS, GENETIC; NERVE NET; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; SIGNAL TRANSDUCTION;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 0345824737     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2136632100     Document Type: Article

References (20)

1. Schena, M., Shalon, D., Davis, R. W. & Brown, P. O. (1995) Science 270, 467-470.
2. Raychaudhuri, S., Stuart, J. M. & Altman, R. B. (2000) Pac. Symp. Biocomput. 5, 455-466.
3. Holter, N. S., Mitra, M., Maritan, A., Cieplak, M., Banavar, J. R. & Fedoroff, N. V. (2000) Proc. Natl. Acad. Sci. USA 97, 8409-8414.
4. Holter, N. S., Maritan, A., Cieplak, M., Fedoroff, N. V. & Banavar, J. R. (2001) Proc. Natl. Acad. Sci. USA 98, 1693-1698.
5. Yeung, M. K., Tegner, J. & Collins, J. J. (2002) Proc. Natl. Acad. Sci. USA 99, 6163-6168.
6. Liebermeister, W. (2002) Bioinformatics 18, 51-60.
7. Lee, T. I., Rinaldi, N. J., Robert, F., Odom, D. T., Bar-Joseph, Z., Gerber, G. K., Hannett, N. M., Harbison, C. T., Thompson, C. M., Simon, I., et al. (2002) Science 298, 799-804.
8. Roth, F. P., Hughes, J. D., Estep, P. W. & Church, G. M. (1998) Nat. Biotechnol. 16, 939-945.
9. Bussemaker, H., Li, H. & Siggia, E. (2000) Proc. Natl. Acad. Sci. USA 97, 10096-10100.
10. Bussemaker, H., Li, H. & Siggia, E. (2000) Nat. Genet. 27, 167-171.
11. Ren, B., Robert, F., Wyrick, J. J., Aparicio, O., Jennings, E. G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., et al. (2000) Science 290, 2306-2309.
12. Zeitlinger, J., Simon, I., Harbison, C. T., Hannett, N. M., Volkert, T. L., Fink, G. R. & Young, R. A. (2003) Cell 113, 395-404.
13. Ronen, M., Rosenberg, R., Shraiman, B. I. & Alon, U. (2002) Proc. Natl. Acad. Sci. USA 99, 10555-10560.
14. Alter, O., Brown, P. O. & Botstein, D. (2000) Proc. Natl. Acad. Sci. USA 97, 10101-10106.
15. Spellman, P. T., Sherlock, G., Zhang, M. Q., Iyer, V. R., Anders, K., Eisen, M. B., Brown., P. O., Botstein, D. & Futcher, B. (1998) Mol. Biol. Cell. 9, 3273-3297.
16. Futcher, B. (2002) Curr. Opin. Cell. Biol. 14, 676-683.
17. Simon, I., Barnett, J., Hannett, N., Harbison, C. T., Rinaldi, N. J., Volkert, T. L., Wyrick, J. J., Zeitlinger, J., Gifford, D. K., Jaakkola, T. S., et al. (2001) Cell 106, 697-708.
18. Bouquin, N., Johnson, A. L., Morgan, B. A. & Johnston, L. H. (1999) Mol. Biol. Cell 10, 3389-3400.
19. Gardner, T. S., di Bernardo, D., Lorenz, D. & Collins, J. J. (2003) Science 301, 102-105.
20. Iyer, V. R., Horak, C. E., Scafe, C. S., Botstein, D., Snyder, M. & Brown, P. O. (2001) Nature 409, 533-538.