메뉴 건너뛰기




Volumn 36, Issue 7, 2004, Pages 760-766

Biased biological functions of horizontally-transferred genes in prokaryotic genomes

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 3042849253     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/ng1381     Document Type: Article
Times cited : (375)

References (27)
  • 1
    • 0034163439 scopus 로고    scopus 로고
    • Horizontal gene transfer and the origin of species: Lessons from bacteria
    • de la Cruz, F. & Davies, J. Horizontal gene transfer and the origin of species: lessons from bacteria. Trends Microbiol. 8, 128-133 (2000).
    • (2000) Trends Microbiol. , vol.8 , pp. 128-133
    • De La Cruz, F.1    Davies, J.2
  • 2
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G. & Groisman, E.A. Lateral gene transfer and the nature of bacterial innovation. Nature 405, 299-304 (2000).
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 3
    • 0036598066 scopus 로고    scopus 로고
    • Gene transfer in bacteria: Speciation without species?
    • Lawrence, J.G. Gene transfer in bacteria: speciation without species? Theor. Popul. Biol. 61, 449-460 (2002).
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 449-460
    • Lawrence, J.G.1
  • 4
    • 0037448585 scopus 로고    scopus 로고
    • Microbial phylogenomics: Branching out
    • Charlebois, R.L., Beiko, R.G., & Ragan, M.A. Microbial phylogenomics: Branching out. Nature 421, 217 (2003).
    • (2003) Nature , vol.421 , pp. 217
    • Charlebois, R.L.1    Beiko, R.G.2    Ragan, M.A.3
  • 8
    • 0032835111 scopus 로고    scopus 로고
    • Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon
    • Yap, W.H., Zhang, Z. & Wang, Y. Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. J. Bacteriol. 181, 5201-5209 (1999).
    • (1999) J. Bacteriol. , vol.181 , pp. 5201-5209
    • Yap, W.H.1    Zhang, Z.2    Wang, Y.3
  • 9
    • 0033758756 scopus 로고    scopus 로고
    • Pathogenicity islands and the evolution of microbes
    • Hacker, J. & Kaper, J.B. Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol. 54, 641-679 (2000).
    • (2000) Annu. Rev. Microbiol. , vol.54 , pp. 641-679
    • Hacker, J.1    Kaper, J.B.2
  • 10
    • 0034629478 scopus 로고    scopus 로고
    • Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
    • Tettelin, H. et al. Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science 287, 1809-1815 (2000).
    • (2000) Science , vol.287 , pp. 1809-1815
    • Tettelin, H.1
  • 11
    • 0032514693 scopus 로고    scopus 로고
    • Natural genetic exchange between Haemophilus and Neisseria: Intergeneric transfer of chromosomal genes between major human pathogens
    • Kroll, J.S., Wilks, K.E., Farrant, J.L. & Langford, P.R. Natural genetic exchange between Haemophilus and Neisseria: intergeneric transfer of chromosomal genes between major human pathogens. Proc. Natl. Acad. Sci. USA 95, 12381-12385 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12381-12385
    • Kroll, J.S.1    Wilks, K.E.2    Farrant, J.L.3    Langford, P.R.4
  • 12
    • 0034947069 scopus 로고    scopus 로고
    • Evolution of an autotransporter: Domain shuffling and lateral transfer from pathogenic Haemophilus to Neisseria
    • Davis, J., Smith, A.L., Hughes, W.R. & Golomb, M. Evolution of an autotransporter: domain shuffling and lateral transfer from pathogenic Haemophilus to Neisseria. J. Bacteriol. 183, 4626-4635 (2001).
    • (2001) J. Bacteriol. , vol.183 , pp. 4626-4635
    • Davis, J.1    Smith, A.L.2    Hughes, W.R.3    Golomb, M.4
  • 13
    • 0026747651 scopus 로고
    • Bacterial plasmids and gene flux
    • Amábile-Cuevas, C.F. & Chicurel, M.E. Bacterial plasmids and gene flux. Cell 70, 189-199 (1992).
    • (1992) Cell , vol.70 , pp. 189-199
    • Amábile-Cuevas, C.F.1    Chicurel, M.E.2
  • 14
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: Rates of change and exchange
    • Lawrence, J.G. & Ochman, H. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44, 383-397 (1997).
    • (1997) J. Mol. Evol. , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 16
    • 0030790687 scopus 로고    scopus 로고
    • Common themes in microbial pathogenicity revisited
    • Finlay, B.B. & Falkow, S. Common themes in microbial pathogenicity revisited. Microbiol. Mol. Biol. Rev. 61, 136-169 (1997).
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 136-169
    • Finlay, B.B.1    Falkow, S.2
  • 17
    • 0033972472 scopus 로고    scopus 로고
    • Bacterial pili: Molecular mechanisms of pathogenesis
    • Sauer, F.G. et al. Bacterial pili: molecular mechanisms of pathogenesis. Curr. Opin. Microbiol. 3, 65-72 (2000).
    • (2000) Curr. Opin. Microbiol. , vol.3 , pp. 65-72
    • Sauer, F.G.1
  • 18
    • 0000241874 scopus 로고
    • GENMARK: Parallel gene recognition for both DNA strands
    • Borodovsky, M. & McIninch, J.D. GENMARK: Parallel gene recognition for both DNA strands. Computers Chem. 17, 123-133 (1993).
    • (1993) Computers Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.D.2
  • 19
    • 0029056051 scopus 로고
    • Detection of new genes in a bacterial genome using Markov models for three gene classes
    • Borodovsky, M. et al. Detection of new genes in a bacterial genome using Markov models for three gene classes. Nucleic Acids Res. 23, 3554-3562 (1995).
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3554-3562
    • Borodovsky, M.1
  • 20
    • 0034872741 scopus 로고    scopus 로고
    • Limitations of compositional approach to identifying horizontally transferred genes
    • Wang, B. Limitations of compositional approach to identifying horizontally transferred genes. J. Mol. Evol. 53, 244-250 (2001).
    • (2001) J. Mol. Evol. , vol.53 , pp. 244-250
    • Wang, B.1
  • 21
    • 0037383272 scopus 로고    scopus 로고
    • Much ado about bacteria-to-vertebrate lateral gene transfer
    • Genereux, D.P. & Logsdon, J.M. Jr. Much ado about bacteria-to-vertebrate lateral gene transfer. Trends, Genet. 19, 191-195 (2003).
    • (2003) Trends Genet. , vol.19 , pp. 191-195
    • Genereux, D.P.1    Logsdon Jr., J.M.2
  • 22
    • 0031720281 scopus 로고    scopus 로고
    • Codon usages in different gene classes of the Escherichia coli genome
    • Karlin, S., Mrázek, J. & Campbell, A.M. Codon usages in different gene classes of the Escherichia coli genome. Mol. Microbiol. 29, 1341-1355 (1998).
    • (1998) Mol. Microbiol. , vol.29 , pp. 1341-1355
    • Karlin, S.1    Mrázek, J.2    Campbell, A.M.3
  • 23
    • 0023650543 scopus 로고
    • The codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M. & Li, W.H. The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295 (1987).
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 24
    • 0030901705 scopus 로고    scopus 로고
    • Pathogenicity islands of virulent bacteria: Structure, function and impact on microbial evolution
    • Hacker, J., Blum-Oehler, G., Mühldorfer, I. & Tschäpe, H. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol. Microbiol. 23, 1089-1097 (1997).
    • (1997) Mol. Microbiol. , vol.23 , pp. 1089-1097
    • Hacker, J.1    Blum-Oehler, G.2    Mühldorfer, I.3    Tschäpe, H.4
  • 25
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson. W.R. & Lipman, D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448 (1988).
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. & Gibson, T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.