-
2
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
BALDI, P. AND LONG, A. D. (2001). A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17, 509-519.
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
3
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
BENJAMINI, Y. AND HOCHBERG, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B 85, 289-300.
-
(1995)
Journal of the Royal Statistical Society, Series B
, vol.85
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
4
-
-
0034370950
-
On the adaptive control of the false discovery rate in multiple testing with independent statistics
-
BENJAMINI, Y. AND HOCHBERG, Y. (2000). On the adaptive control of the false discovery rate in multiple testing with independent statistics. Journal of Educational and Behavioral Statistics 25, 60-83.
-
(2000)
Journal of Educational and Behavioral Statistics
, vol.25
, pp. 60-83
-
-
Benjamini, Y.1
Hochberg, Y.2
-
5
-
-
0034526621
-
Microarray expression profiling identifies genes with altered expression in hdl-deficient mice
-
CALLOW, M. J, DUDOIT, S., GONG, E. L., SPEED, T. P. AND RUBIN, E. M. (2000). Microarray expression profiling identifies genes with altered expression in hdl-deficient mice. Genome Research 10, 2022-2029.
-
(2000)
Genome Research
, vol.10
, pp. 2022-2029
-
-
Callow, M.J.1
Dudoit, S.2
Gong, E.L.3
Speed, T.P.4
Rubin, E.M.5
-
6
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
CHURCHILL, G. A. (2002). Fundamentals of experimental design for cDNA microarrays. Nature Genetics 32, 490-495.
-
(2002)
Nature Genetics
, vol.32
, pp. 490-495
-
-
Churchill, G.A.1
-
7
-
-
3943112078
-
How many mice and how many arrays? Replication of cDNA microarray experiments
-
Lin, S. M. and Allred, E. T. (eds), New York: Kluwer
-
CUI, X. AND CHURCHILL, G. A. (2003a). How many mice and how many arrays? Replication of cDNA microarray experiments. In Lin, S. M. and Allred, E. T. (eds), Methods of Microarray Data Analysis 111, New York: Kluwer.
-
(2003)
Methods of Microarray Data Analysis
, vol.111
-
-
Cui, X.1
Churchill, G.A.2
-
8
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray experiments
-
CUI, X. AND CHURCHILL, G. A. (2003b). Statistical tests for differential expression in cDNA microarray experiments. Genome Biology 4.
-
(2003)
Genome Biology
, vol.4
-
-
Cui, X.1
Churchill, G.A.2
-
10
-
-
0043203327
-
Multiple hypothesis testing in microarray experiments
-
DUDOIT, S., SHAFFER, J. P. AND BOLDRICK, J. C. (2003). Multiple hypothesis testing in microarray experiments. Statistical Science 18, 71-103.
-
(2003)
Statistical Science
, vol.18
, pp. 71-103
-
-
Dudoit, S.1
Shaffer, J.P.2
Boldrick, J.C.3
-
11
-
-
84949161149
-
Stein's estimation rule and its competitors - An empirical Bayes approach
-
EFRON, B. AND MORRIS, C. (1973). Stein's estimation rule and its competitors - an empirical Bayes approach. Journal of the American Statistical Association 68, 117-130.
-
(1973)
Journal of the American Statistical Association
, vol.68
, pp. 117-130
-
-
Efron, B.1
Morris, C.2
-
12
-
-
0347763853
-
Construction of improved estimators in multiparameter estimation for continuous exponential familes
-
GHOSH, M., HWANG, J. AND TSUI, K. (1984). Construction of improved estimators in multiparameter estimation for continuous exponential familes. Journal of Multivariate Analysis 14, 212-220.
-
(1984)
Journal of Multivariate Analysis
, vol.14
, pp. 212-220
-
-
Ghosh, M.1
Hwang, J.2
Tsui, K.3
-
13
-
-
0038421215
-
-
KENDZIORSKI, C. M., NEWTON, M. A., LAN, H. AND GOULD, M. N. (2003). On parametric empirical bayes methods for comparing multiple groups using replicated gene expression profiles, http://www.stat.wisc.edu/~newton/research/ arrays.html.
-
(2003)
On Parametric Empirical Bayes Methods for Comparing Multiple Groups Using Replicated Gene Expression Profiles
-
-
Kendziorski, C.M.1
Newton, M.A.2
Lan, H.3
Gould, M.N.4
-
14
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
KERR, M. K., MARTIN, M. AND CHURCHILL, G. A. (2000). Analysis of variance for gene expression microarray data. Journal of Computational Biology 7, 819-837.
-
(2000)
Journal of Computational Biology
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
15
-
-
0011331867
-
Discussion of Professor Stein's paper, 'Confidence sets for the mean of a multivariate normal distribution'
-
LINDLEY, D. V. (1962). Discussion of Professor Stein's paper, 'Confidence sets for the mean of a multivariate normal distribution'. Journal of the Royal Statistical Society Series B 24, 265-296.
-
(1962)
Journal of the Royal Statistical Society Series B
, vol.24
, pp. 265-296
-
-
Lindley, D.V.1
-
16
-
-
0003605027
-
-
Cary, NC: SAS Institute Inc.
-
LITTELL, R. C., MILLIKEN, G., STROUP, W. W. AND WOLFINGER, R. D. (1996). SAS System for Mixed Models. Cary, NC: SAS Institute Inc.
-
(1996)
SAS System for Mixed Models
-
-
Littell, R.C.1
Milliken, G.2
Stroup, W.W.3
Wolfinger, R.D.4
-
18
-
-
0000323737
-
A unified approach to mixed linear models
-
MCLEAN, R. A., SANDERS, W. L. AND STROUP, W. (1991). A unified approach to mixed linear models. The American Statistician 45, 54-64.
-
(1991)
The American Statistician
, vol.45
, pp. 54-64
-
-
Mclean, R.A.1
Sanders, W.L.2
Stroup, W.3
-
19
-
-
0041587157
-
-
NEWTON, M. A., NOUEIRY, A., SARKAR, D. AND AHLQUIST, P. (2003). Detecting differential gene expression with a semiparametric hierarchical mixture method, http://www.stat.wisc.edu/~newton/papers/abstracts/tr1074a.html.
-
(2003)
Detecting Differential Gene Expression with A Semiparametric Hierarchical Mixture Method
-
-
Newton, M.A.1
Noueiry, A.2
Sarkar, D.3
Ahlquist, P.4
-
20
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
SCHENA, M., SHALON, D., DAVIS, R. AND BROWN, P. O. (1995). Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.3
Brown, P.O.4
-
22
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
SMYTH, G. K. (2004). Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3.
-
(2004)
Statistical Applications in Genetics and Molecular Biology
, vol.3
-
-
Smyth, G.K.1
-
24
-
-
0041423883
-
SAM thresholding and false discovery rates for detecting differential gene expression in DNA microarrays
-
Parmigiani, G., Garrett, E. S., Irizarry, R. A. and Zeger, S. L. (eds), New York: Springer
-
STOREY, J. AND TIBSHIRANI, R. (2003). SAM thresholding and false discovery rates for detecting differential gene expression in DNA microarrays. In Parmigiani, G., Garrett, E. S., Irizarry, R. A. and Zeger, S. L. (eds), The Analysis of Gene Expression Data: Methods and Software, New York: Springer.
-
(2003)
The Analysis of Gene Expression Data: Methods and Software
-
-
Storey, J.1
Tibshirani, R.2
-
26
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
WOLFINGER, R. D., GIBSON, G., WOLFINGER, E. D., BENNETT, L., HAMADEH, H., BUSHEL, P., AFSHARI, C. AND PAULES, R. S. (2001). Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8, 625-637.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
27
-
-
0348143180
-
A random variance model for detection of differential gene expression in small microarray experiments
-
WRIGHT, G. W. AND SIMON, R. M. (2003). A random variance model for detection of differential gene expression in small microarray experiments. Bioinformatics 19, 2448-2455.
-
(2003)
Bioinformatics
, vol.19
, pp. 2448-2455
-
-
Wright, G.W.1
Simon, R.M.2
-
28
-
-
0242291496
-
Maanova: A software package for the analysis of spotted cDNA microarray experiments
-
Parmigiani, G., Garrett, E. S., Irizarry, R. A. and Zeger, S. L. (eds), New York: Springer
-
Wu, H., KERR, M. K., Cui, X. AND CHURCHILL, G. A. (2003). Maanova: a software package for the analysis of spotted cDNA microarray experiments. In Parmigiani, G., Garrett, E. S., Irizarry, R. A. and Zeger, S. L. (eds), The Analysis of Gene Expression Data: Methods and Software, New York: Springer.
-
(2003)
The Analysis of Gene Expression Data: Methods and Software
-
-
Wu, H.1
Kerr, M.K.2
Cui, X.3
Churchill, G.A.4
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