-
1
-
-
84944814914
-
Ueber künstliche bildung des harnstoffs
-
Wöhler, F. Ueber künstliche bildung des harnstoffs. Pogg. Ann. 1828, 88, 253-256.
-
(1828)
Pogg. Ann
, vol.88
, pp. 253-256
-
-
Wöhler, F.1
-
2
-
-
84859616806
-
High-valent organometallic copper and palladium in catalysis
-
Hickman, A.J.; Sanford, M.S. High-valent organometallic copper and palladium in catalysis. Nature 2012, 484, 177-185.
-
(2012)
Nature
, vol.484
, pp. 177-185
-
-
Hickman, A.J.1
Sanford, M.S.2
-
3
-
-
84862874573
-
Enantioselective, transition metal catalyzed cycloisomerizations
-
Marinetti, A.; Julien, H.; Voituriez, A. Enantioselective, transition metal catalyzed cycloisomerizations. Chem. Soc. Rev. 2012, 41, 4884-4908.
-
(2012)
Chem. Soc. Rev
, vol.41
, pp. 4884-4908
-
-
Marinetti, A.1
Julien, H.2
Voituriez, A.3
-
4
-
-
84859239268
-
Recent advances and applications of iridium-catalysed asymmetric allylic substitution
-
Tosatti, P.; Nelson, A.; Marsden, S.P. Recent advances and applications of iridium-catalysed asymmetric allylic substitution. Org. Biomol. Chem. 2012, 10, 3147-3163.
-
(2012)
Org. Biomol. Chem
, vol.10
, pp. 3147-3163
-
-
Tosatti, P.1
Nelson, A.2
Marsden, S.P.3
-
5
-
-
84859804831
-
Making expensive dirhodium(II) catalysts cheaper: Rh(II) recycling methods
-
Candeias, N.R.; Afonso, C.A.; Gois, P.M. Making expensive dirhodium(II) catalysts cheaper: Rh(II) recycling methods. Org. Biomol. Chem. 2012, 10, 3357-3378.
-
(2012)
Org. Biomol. Chem
, vol.10
, pp. 3357-3378
-
-
Candeias, N.R.1
Afonso, C.A.2
Gois, P.M.3
-
6
-
-
84865077790
-
Gold-catalyzed one-step construction of 2,3-dihydro-1H-pyrrolizines with an electron-withdrawing group in the 5-position: A formal synthesis of 7-methoxymitosene
-
Yan, Z.Y.; Xiao, Y.; Zhang, L. Gold-catalyzed one-step construction of 2,3-dihydro-1H-pyrrolizines with an electron-withdrawing group in the 5-position: A formal synthesis of 7-methoxymitosene. Angew. Chem. Int. Ed. 2012, 51, 8624-8627.
-
(2012)
Angew. Chem. Int. Ed
, vol.51
, pp. 8624-8627
-
-
Yan, Z.Y.1
Xiao, Y.2
Zhang, L.3
-
7
-
-
33645896595
-
Palladium-catalyzed vinylic hydrogen substitution reactions with aryl, benzyl, and styryl halides
-
Heck, R.F.; Nolley, J.P. Palladium-catalyzed vinylic hydrogen substitution reactions with aryl, benzyl, and styryl halides. J. Org. Chem. 1972, 37, 2320-2322.
-
(1972)
J. Org. Chem
, vol.37
, pp. 2320-2322
-
-
Heck, R.F.1
Nolley, J.P.2
-
8
-
-
37049091909
-
Highly general stereo-, regio- and chemoselective synthesis of terminal and internal conjugated enynes by Pd-catalyzed reactions of alkynylzinc reagents with alkenyl halides
-
King, A.O.; Okukado, N.; Negishi, E. Highly general stereo-, regio- and chemoselective synthesis of terminal and internal conjugated enynes by Pd-catalyzed reactions of alkynylzinc reagents with alkenyl halides. J. Chem. Soc. Chem. Commun. 1977, 683-684.
-
(1977)
J. Chem. Soc. Chem. Commun
, pp. 683-684
-
-
King, A.O.1
Okukado, N.2
Negishi, E.3
-
9
-
-
49249152617
-
A new stereospecific cross-coupling by the palladium-catalyzed reaction of 1-alkenylboranes with 1-alkenyl or 1-alkynyl halides
-
Miyaura, N.; Yamada, K.; Suzuki, A. A new stereospecific cross-coupling by the palladium-catalyzed reaction of 1-alkenylboranes with 1-alkenyl or 1-alkynyl halides. Tetrahedron Lett. 1979, 20, 3437-3440.
-
(1979)
Tetrahedron Lett
, vol.20
, pp. 3437-3440
-
-
Miyaura, N.1
Yamada, K.2
Suzuki, A.3
-
10
-
-
84928079299
-
-
Green Chemistry, United States Environmental Protection Agency. Available online, (accessed on 20 July 2012)
-
Green Chemistry, United States Environmental Protection Agency. Available online: http://www.epa.gov/greenchemistry/ (accessed on 20 July 2012).
-
-
-
-
11
-
-
0030037715
-
Rates of uncatalyzed peptide bond hydrolysis in neutral solution and the transition state affinities of proteases
-
Radzicka, A.; Wolfenden, R. Rates of uncatalyzed peptide bond hydrolysis in neutral solution and the transition state affinities of proteases. J. Am. Chem. Soc. 1996, 118, 6105-6109.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 6105-6109
-
-
Radzicka, A.1
Wolfenden, R.2
-
12
-
-
0035543093
-
The depth of chemical time and the power of enzymes as catalysts
-
Wolfenden, R.; Snider, M.J. The depth of chemical time and the power of enzymes as catalysts. Accounts Chem. Res. 2001, 34, 938-945.
-
(2001)
Accounts Chem. Res
, vol.34
, pp. 938-945
-
-
Wolfenden, R.1
Snider, M.J.2
-
13
-
-
33748633480
-
Electrostatic basis for enzyme catalysis
-
Warshel, A.; Sharma, P.K.; Kato, M.; Xiang, Y.; Liu, H.; Olsson, M.H.M. Electrostatic basis for enzyme catalysis. Chem. Rev. 2006, 106, 3210-3235.
-
(2006)
Chem. Rev
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
-
14
-
-
76949104462
-
Dinuclear Zn(II) catalysts as biomimics of RNA and DNA phosphoryl transfer enzymes: Changing the medium from water to aclohol provides enzyme-like rate enhancements
-
Brown, R.S.; Lu, Z.-L.; Liu, T.; Tsang, W.Y.; Edwards, D.R.; Neverov, A.A. Dinuclear Zn(II) catalysts as biomimics of RNA and DNA phosphoryl transfer enzymes: Changing the medium from water to aclohol provides enzyme-like rate enhancements. J. Phys. Org. Chem. 2009, 23, 1-15.
-
(2009)
J. Phys. Org. Chem
, vol.23
, pp. 1-15
-
-
Brown, R.S.1
Lu, Z.-L.2
Liu, T.3
Tsang, W.Y.4
Edwards, D.R.5
Neverov, A.A.6
-
15
-
-
0035843170
-
Industrial biocatalysis today and tomorrow
-
Schmid, A.; Dordick, J.S.; Hauer, B.; Kiener, A.; Wubbolts, M.; Witholt, B. Industrial biocatalysis today and tomorrow. Nature 2001, 409, 258-268.
-
(2001)
Nature
, vol.409
, pp. 258-268
-
-
Schmid, A.1
Dordick, J.S.2
Hauer, B.3
Kiener, A.4
Wubbolts, M.5
Witholt, B.6
-
16
-
-
0036859983
-
High temperature biocatalysis by chemically modified cytochrome C
-
García-Arellano, H.; Valderrama, B.; Saab-Rincón, G.; Vazquez-Duhalt, R. High temperature biocatalysis by chemically modified cytochrome C. Bioconjug. Chem. 2002, 13, 1336-1344.
-
(2002)
Bioconjug. Chem
, vol.13
, pp. 1336-1344
-
-
García-Arellano, H.1
Valderrama, B.2
Saab-Rincón, G.3
Vazquez-Duhalt, R.4
-
17
-
-
39749093400
-
Synthesis of chiral pharmaceutical intermediates by biocatalysis
-
Ramesh, N.P. Synthesis of chiral pharmaceutical intermediates by biocatalysis. Coord. Chem. Rev. 2008, 252, 659-701.
-
(2008)
Coord. Chem. Rev
, vol.252
, pp. 659-701
-
-
Ramesh, N.P.1
-
18
-
-
21144455026
-
Enantioselective C-C bond synthesis catalysed by enzymes
-
Sukamaran, J.; Hanefeld, U. Enantioselective C-C bond synthesis catalysed by enzymes. Chem. Soc. Rev. 2005, 34, 530-542.
-
(2005)
Chem. Soc. Rev
, vol.34
, pp. 530-542
-
-
Sukamaran, J.1
Hanefeld, U.2
-
19
-
-
3242788710
-
Rational or random?
-
Available online, (accessed on 28 September 2012)
-
Wiessman, K. Rational or random? Chem. World 2004, 1. Available online: http://www.rsc.org/chemistryworld/Issues/2004/July/rational.asp (accessed on 28 September 2012).
-
(2004)
Chem. World
, vol.1
-
-
Wiessman, K.1
-
20
-
-
79958097953
-
The moderately efficient enzyme: Evolutionary and physicochemical trends shaping enzyme parameters
-
Bar-Even, A.; Noor, E.; Savir, Y.; Libermeister, W.; Davidi, D.; Tawfik, D.S.; Milo, R. The moderately efficient enzyme: Evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry 2011, 50, 4402-4410.
-
(2011)
Biochemistry
, vol.50
, pp. 4402-4410
-
-
Bar-Even, A.1
Noor, E.2
Savir, Y.3
Libermeister, W.4
Davidi, D.5
Tawfik, D.S.6
Milo, R.7
-
21
-
-
37049059539
-
Prevalence and significance of the product inhibition of enzymes
-
Frieden, E.; Walter, C. Prevalence and significance of the product inhibition of enzymes. Nature 1963, 198, 834-837.
-
(1963)
Nature
, vol.198
, pp. 834-837
-
-
Frieden, E.1
Walter, C.2
-
22
-
-
79953815266
-
Chemistry: Enzyme expertise
-
Sanderson, K. Chemistry: Enzyme expertise. Nature 2011, 471, 397-398.
-
(2011)
Nature
, vol.471
, pp. 397-398
-
-
Sanderson, K.1
-
23
-
-
84855426474
-
Random mutagenesis by erorr-prone PCR
-
McCullum, E.O.; Williams, B.A.; Zhang, J.; Chaput, J.C. Random mutagenesis by erorr-prone PCR. Methods Mol. Biol. 2010, 634, 103-109.
-
(2010)
Methods Mol. Biol
, vol.634
, pp. 103-109
-
-
McCullum, E.O.1
Williams, B.A.2
Zhang, J.3
Chaput, J.C.4
-
24
-
-
0028050350
-
Rapid evolution of a protein in vitro by DNA shuffling
-
Stemmer, W.P. Rapid evolution of a protein in vitro by DNA shuffling. Nature 1994, 370, 389-391.
-
(1994)
Nature
, vol.370
, pp. 389-391
-
-
Stemmer, W.P.1
-
25
-
-
68049106179
-
Directed evolution drives the next generation of biocatalysts
-
Turner, N.J. Directed evolution drives the next generation of biocatalysts. Nat. Chem. Biol. 2009, 5, 567-573.
-
(2009)
Nat. Chem. Biol
, vol.5
, pp. 567-573
-
-
Turner, N.J.1
-
26
-
-
80051669875
-
Directed evolution of sulfotransferases and paraoxonases by ancestral libraries
-
Alcolombri, U.; Elias, M.; Tawfik, D.S. Directed evolution of sulfotransferases and paraoxonases by ancestral libraries. J. Mol. Biol. 2011, 411, 837-853.
-
(2011)
J. Mol. Biol
, vol.411
, pp. 837-853
-
-
Alcolombri, U.1
Elias, M.2
Tawfik, D.S.3
-
27
-
-
78349313517
-
Beyond directed evolution: Semi-rational protein engineering and design
-
Lutz, S. Beyond directed evolution: Semi-rational protein engineering and design. Curr. Opin. Biotechnol. 2010, 21, 734-743.
-
(2010)
Curr. Opin. Biotechnol
, vol.21
, pp. 734-743
-
-
Lutz, S.1
-
28
-
-
54149114377
-
Ohno's model revisited: Measuring the frequency of potentially adaptive mutations under various mutational drifs
-
Bershtein, S.; Tawfik, D.S. Ohno's model revisited: Measuring the frequency of potentially adaptive mutations under various mutational drifs. Mol. Biol. Evol. 2008, 25, 2311-2318.
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 2311-2318
-
-
Bershtein, S.1
Tawfik, D.S.2
-
29
-
-
77954743785
-
Mutational effects and the evolution of new protein functions
-
Soskine, M.; Tawfik, D.S. Mutational effects and the evolution of new protein functions. Nat. Rev. Genet. 2010, 11, 572-582.
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 572-582
-
-
Soskine, M.1
Tawfik, D.S.2
-
30
-
-
65649133585
-
Critical reviews in biochemistry and molecular biology. Introduction
-
Wickens, M.; Cox, M.M. Critical reviews in biochemistry and molecular biology. Introduction. Crit. Rev. Biochem. Mol. Biol. 2009, 44, 2.
-
(2009)
Crit. Rev. Biochem. Mol. Biol
, vol.44
, pp. 2
-
-
Wickens, M.1
Cox, M.M.2
-
31
-
-
34248567845
-
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
-
Reetz, M.T.; Carballeira, J.D. Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat. Protoc. 2007, 2, 891-903.
-
(2007)
Nat. Protoc
, vol.2
, pp. 891-903
-
-
Reetz, M.T.1
Carballeira, J.D.2
-
32
-
-
77956234144
-
Natural diversity to guide focused directed evolution
-
Helge, J.; Bornscheuer, U.T. Natural diversity to guide focused directed evolution. ChemBioChem 2010, 11, 1861-1866.
-
(2010)
ChemBioChem
, vol.11
, pp. 1861-1866
-
-
Helge, J.1
Bornscheuer, U.T.2
-
33
-
-
78149432825
-
Laboratory evolution of stereoselective enzymes: A prolific source of catalysts for asymmetric reactions
-
Reetz, M.T. Laboratory evolution of stereoselective enzymes: A prolific source of catalysts for asymmetric reactions. Angew. Chem. Int. Ed. 2011, 50, 138-174.
-
(2011)
Angew. Chem. Int. Ed
, vol.50
, pp. 138-174
-
-
Reetz, M.T.1
-
35
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Röthlisberger, D.; Kheronsky, O.; Wollacott, A.M.; Jiang, L.; DeChancie, J.; Betker, J.; Gallaher, J.L.; Althoff, E.A.; Zanghellini, A.; Dym, O. et al. Kemp elimination catalysts by computational enzyme design. Nature 2008, 435, 190-195.
-
(2008)
Nature
, vol.435
, pp. 190-195
-
-
Röthlisberger, D.1
Kheronsky, O.2
Wollacott, A.M.3
Jiang, L.4
Dechancie, J.5
Betker, J.6
Gallaher, J.L.7
Althoff, E.A.8
Zanghellini, A.9
Dym, O.10
-
36
-
-
78049316762
-
Exploring challenges in rational enzyme design by simulating the catalysis in artificial Kemp eliminase
-
Frushicheva, M.P.; Cao, J.; Chu, Z.T.; Warshel, A. Exploring challenges in rational enzyme design by simulating the catalysis in artificial Kemp eliminase. Proc. Natl. Acad. Sci. USA 2010, 107, 16869-16874.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 16869-16874
-
-
Frushicheva, M.P.1
Cao, J.2
Chu, Z.T.3
Warshel, A.4
-
37
-
-
79955625862
-
Challenges and advances in validating enzyme design proposals: The case of Kemp eliminase catalysis
-
Frushicheva, M.P.; Cao, J.; Warshel, A. Challenges and advances in validating enzyme design proposals: The case of Kemp eliminase catalysis. Biochemistry 2011, 50, 3849-3858.
-
(2011)
Biochemistry
, vol.50
, pp. 3849-3858
-
-
Frushicheva, M.P.1
Cao, J.2
Warshel, A.3
-
38
-
-
0028869408
-
Large rate accelerations in antibody catalysis by strategic use of haptenic charge
-
Thorn, S.N.; Daniels, R.G.; Auditor, M.-T.M.; Hilvert, D. Large rate accelerations in antibody catalysis by strategic use of haptenic charge. Nature 1995, 373, 228-230.
-
(1995)
Nature
, vol.373
, pp. 228-230
-
-
Thorn, S.N.1
Daniels, R.G.2
Auditor, M.-T.M.3
Hilvert, D.4
-
39
-
-
17044431448
-
Structural origins of efficient proton abstraction from carbon by a catalytic antibody
-
Debler, E.W.; Ito, S.; Seebeck, F.; Heine, A.; Hilvert, D.; Wilson, I.A. Structural origins of efficient proton abstraction from carbon by a catalytic antibody. Proc. Natl. Acad. Sci. USA 2005, 102, 4984-4989.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4984-4989
-
-
Debler, E.W.1
Ito, S.2
Seebeck, F.3
Heine, A.4
Hilvert, D.5
Wilson, I.A.6
-
40
-
-
0029793086
-
Off-the-shelf proteins that rival tailor-made antibodies as catalysts
-
Hollfelder, F.; Kirby, A.J.; Tawfik, D.S. Off-the-shelf proteins that rival tailor-made antibodies as catalysts. Nature 1996, 383, 60-63.
-
(1996)
Nature
, vol.383
, pp. 60-63
-
-
Hollfelder, F.1
Kirby, A.J.2
Tawfik, D.S.3
-
41
-
-
0034673366
-
Characterization of proton-transfer catalysis by serum albumins
-
Hollfelder, F.; Kirby, A.J.; Tawfik, D.S.; Kikuchi, K.; Hilvert, D. Characterization of proton-transfer catalysis by serum albumins. J. Am. Chem. Soc. 2000, 122, 1022-1029.
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 1022-1029
-
-
Hollfelder, F.1
Kirby, A.J.2
Tawfik, D.S.3
Kikuchi, K.4
Hilvert, D.5
-
42
-
-
0030807838
-
Efficient catalysis of proton transfer by synzymes
-
Hollfelder, F.; Kirby, A.J.; Tawfik, D.S. Efficient catalysis of proton transfer by synzymes. J. Am. Chem. Soc. 1997, 119, 9578-9579.
-
(1997)
J. Am. Chem. Soc
, vol.119
, pp. 9578-9579
-
-
Hollfelder, F.1
Kirby, A.J.2
Tawfik, D.S.3
-
43
-
-
0029988963
-
Transition state of the base-promoted ring-opening of isoxazoles. Theoretical prediction of catalytic functionalities and design of haptens for antibody production
-
Na, J.; Houk, K.N.; Hilvert, D. Transition state of the base-promoted ring-opening of isoxazoles. Theoretical prediction of catalytic functionalities and design of haptens for antibody production. J. Am. Chem. Soc. 1996, 118, 6462-6471.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 6462-6471
-
-
Na, J.1
Houk, K.N.2
Hilvert, D.3
-
44
-
-
0032253961
-
Theozymes and compuzymes: Theoretical models for biological catalysis
-
Tantillo, D.J.; Chen, J.; Houk, K.N. Theozymes and compuzymes: Theoretical models for biological catalysis. Curr. Opin. Chem. Biol. 1988, 2, 743-750.
-
(1988)
Curr. Opin. Chem. Biol
, vol.2
, pp. 743-750
-
-
Tantillo, D.J.1
Chen, J.2
Houk, K.N.3
-
45
-
-
33751525692
-
New algorithms and an in silico benchmark for computational enzyme design
-
Zanghellini, A.; Jiang, L.; Wollacott, A.M.; Cheng, G.; Meiler, J.; Althoff, E.A.; Röthlisberger, D.; Baker, D. New algorithms and an in silico benchmark for computational enzyme design. Protein Sci. 2006, 15, 2785-2794.
-
(2006)
Protein Sci
, vol.15
, pp. 2785-2794
-
-
Zanghellini, A.1
Jiang, L.2
Wollacott, A.M.3
Cheng, G.4
Meiler, J.5
Althoff, E.A.6
Röthlisberger, D.7
Baker, D.8
-
46
-
-
0035807809
-
Enzyme-like proteins by computational design
-
Bolon, D.N.; Mayo, S.L. Enzyme-like proteins by computational design. Proc. Natl. Acad. Sci. USA 2001, 98, 14274-14279.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14274-14279
-
-
Bolon, D.N.1
Mayo, S.L.2
-
47
-
-
77649271939
-
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
-
Khersonsky, O.; Röthlisberger, D.; Dym, O.; Albeck, S.; Jackson, C.J.; Baker, D.; Tawfik, D.S. Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series. J. Mol. Biol. 2010, 396, 1025-1042.
-
(2010)
J. Mol. Biol
, vol.396
, pp. 1025-1042
-
-
Khersonsky, O.1
Röthlisberger, D.2
Dym, O.3
Albeck, S.4
Jackson, C.J.5
Baker, D.6
Tawfik, D.S.7
-
48
-
-
79952437832
-
Optimization of the in-silico-designed kemp eliminase KE70 by computational design and directed evolution
-
Khersonsky, O.; Röthlisberger, D.; Wollacott, A.M.; Murphy, P.; Dym, O.; Albeck, S.; Kiss, G.; Houk, K.N.; Baker, D.; Tawfik, D.S. Optimization of the in-silico-designed kemp eliminase KE70 by computational design and directed evolution. J. Mol. Biol. 2010, 407, 391-412.
-
(2010)
J. Mol. Biol
, vol.407
, pp. 391-412
-
-
Khersonsky, O.1
Röthlisberger, D.2
Wollacott, A.M.3
Murphy, P.4
Dym, O.5
Albeck, S.6
Kiss, G.7
Houk, K.N.8
Baker, D.9
Tawfik, D.S.10
-
49
-
-
84863000087
-
Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59
-
Kheronsky, O.; Kiss, G.; Röthlisberger, D.; Dym, O.; Albeck, S.; Houk, K.N.; Baker, D.; Tawfik, D.S. Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59. Proc. Natl. Acad. Sci. USA 2012, 109, 10358-10363.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 10358-10363
-
-
Kheronsky, O.1
Kiss, G.2
Röthlisberger, D.3
Dym, O.4
Albeck, S.5
Houk, K.N.6
Baker, D.7
Tawfik, D.S.8
-
50
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
Jiang, L.; Althoff, E.A.; Clemente, F.R.; Doyle, L.; Roethlisberger, D.; Zanghellini, A.; Gallaher, J.L.; Betker, J.L.; Tanaka, F.; Barbas, I. et al. De novo computational design of retro-aldol enzymes. Science 2008, 319, 1387-1391.
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
Althoff, E.A.2
Clemente, F.R.3
Doyle, L.4
Roethlisberger, D.5
Zanghellini, A.6
Gallaher, J.L.7
Betker, J.L.8
Tanaka, F.9
Barbas, I.10
-
51
-
-
77950437360
-
Origins of catalysis by computationally designed retroaldolase enzymes
-
Lassila, J.K.; Baker, D.; Herschlag, D. Origins of catalysis by computationally designed retroaldolase enzymes. Proc. Natl. Acad. Sci. USA 2010, 107, 4937-4942.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4937-4942
-
-
Lassila, J.K.1
Baker, D.2
Herschlag, D.3
-
52
-
-
84855858058
-
Structural analyses of covalent enzyme-substrate analog complexes reveals strengths and limitations of de novo enzyme design
-
Wang, L.; Althoff, E.A.; Bolduc, J.; Jiang, L.; Moody, J.; Lassila, J.K.; Giger, L.; Hilvert, D.; Stoddard, B.L.; Baker, D. Structural analyses of covalent enzyme-substrate analog complexes reveals strengths and limitations of de novo enzyme design. J. Mol. Biol. 2012, 415, 615-625.
-
(2012)
J. Mol. Biol
, vol.415
, pp. 615-625
-
-
Wang, L.1
Althoff, E.A.2
Bolduc, J.3
Jiang, L.4
Moody, J.5
Lassila, J.K.6
Giger, L.7
Hilvert, D.8
Stoddard, B.L.9
Baker, D.10
-
53
-
-
84860115640
-
Robust design and optimization of retroaldol enzymes
-
Althoff, E.A.; Wang, L.; Jiang, L.; Giger, L.; Lassila, J.K.; Wang, Z.; Smith, M.; Hari, S.; Kast, P.; Herschlag, D. et al. Robust design and optimization of retroaldol enzymes. Protein Sci. 2012, 21, 717-726.
-
(2012)
Protein Sci
, vol.21
, pp. 717-726
-
-
Althoff, E.A.1
Wang, L.2
Jiang, L.3
Giger, L.4
Lassila, J.K.5
Wang, Z.6
Smith, M.7
Hari, S.8
Kast, P.9
Herschlag, D.10
-
54
-
-
77954811495
-
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction
-
Siegel, J.B.; Zanghellini, A.; Lovick, H.M.; Kiss, G.; Lambert, A.R.; Clair, St. J.L.; Hilvert, D.; Gelb, M.H.; Stoddard, B.L.; Houk, K.N. et al. Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction. Science 2010, 329, 309-313.
-
(2010)
Science
, vol.329
, pp. 309-313
-
-
Siegel, J.B.1
Zanghellini, A.2
Lovick, H.M.3
Kiss, G.4
Lambert, A.R.5
Clair St., J.L.6
Hilvert, D.7
Gelb, M.H.8
Stoddard, B.L.9
Houk, K.N.10
-
55
-
-
73549117481
-
An artificial di-iron oxo-protein with phenol oxidase activity
-
Faiella, M.; Andreozzi, C.; de Rosales, R.T.M.; Pavone, V.; Maglio, O.; Nastri, F.; deGrado, W.F.; Lombardi, A. An artificial di-iron oxo-protein with phenol oxidase activity. Nat. Chem. Biol. 2009, 5, 882-884.
-
(2009)
Nat. Chem. Biol
, vol.5
, pp. 882-884
-
-
Faiella, M.1
Andreozzi, C.2
de Rosales, R.T.M.3
Pavone, V.4
Maglio, O.5
Nastri, F.6
Degrado, W.F.7
Lombardi, A.8
-
56
-
-
84855685292
-
Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer
-
Der, B.S.; Machius, M.; Miley, M.J.; Mills, J.; Szyperski, T.; Kuhlman, B. Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer. J. Am. Chem. Soc. 2011, 134, 375-385.
-
(2011)
J. Am. Chem. Soc
, vol.134
, pp. 375-385
-
-
Der, B.S.1
Machius, M.2
Miley, M.J.3
Mills, J.4
Szyperski, T.5
Kuhlman, B.6
-
57
-
-
84860773275
-
Catalysis by a de novo zinc-mediated protein interface: Implications for natural enzyme evolution and rational enzyme engineering
-
Der, B.S.; Edwards, D.R.; Kuhlman, B. Catalysis by a de novo zinc-mediated protein interface: Implications for natural enzyme evolution and rational enzyme engineering. Biochemistry 2012, 51, 3933-3940.
-
(2012)
Biochemistry
, vol.51
, pp. 3933-3940
-
-
Der, B.S.1
Edwards, D.R.2
Kuhlman, B.3
-
58
-
-
34247113668
-
Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase
-
Jennewein, S.; Schürmann, M.; Wolberg, M.; Hilker, I.; Luiten, R.; Wubbolts, M.; Mink, D. Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase. Biotechnol. J. 2006, 1, 537-548.
-
(2006)
Biotechnol. J
, vol.1
, pp. 537-548
-
-
Jennewein, S.1
Schürmann, M.2
Wolberg, M.3
Hilker, I.4
Luiten, R.5
Wubbolts, M.6
Mink, D.7
-
59
-
-
0018715371
-
Design, synthesis and characterisation of a 34-residue polypeptide that interacts with nucleic acids
-
Gutte, B.; Daumigen, M.; Wittschieber, E. Design, synthesis and characterisation of a 34-residue polypeptide that interacts with nucleic acids. Nature 1979, 281, 650-655.
-
(1979)
Nature
, vol.281
, pp. 650-655
-
-
Gutte, B.1
Daumigen, M.2
Wittschieber, E.3
-
60
-
-
0023646665
-
Rational modification of enzyme catalysis by engineering surface charge
-
Russel, A.J.; Fersht, A.R. Rational modification of enzyme catalysis by engineering surface charge. Nature 1987, 328, 496-500.
-
(1987)
Nature
, vol.328
, pp. 496-500
-
-
Russel, A.J.1
Fersht, A.R.2
-
61
-
-
0026335211
-
Construction of new ligand binding sites in proteins of known structure. 1. Computer-aided modeling of sites with pre-defined geometry
-
Hellinga, H.W.; Richards, F.M. Construction of new ligand binding sites in proteins of known structure. 1. Computer-aided modeling of sites with pre-defined geometry. J. Mol. Biol. 1991, 222, 763-785.
-
(1991)
J. Mol. Biol
, vol.222
, pp. 763-785
-
-
Hellinga, H.W.1
Richards, F.M.2
-
62
-
-
0026321752
-
Construction of new ligand binding sites in proteins of known structure II. Grafting of a buried transition metal binding site into Escherichia coli thioredoxin
-
Hellinga, H.W.; Caradonna, J.P.; Richard, F.M. Construction of new ligand binding sites in proteins of known structure II. Grafting of a buried transition metal binding site into Escherichia coli thioredoxin. J. Mol. Biol. 1991, 222, 787-803.
-
(1991)
J. Mol. Biol
, vol.222
, pp. 787-803
-
-
Hellinga, H.W.1
Caradonna, J.P.2
Richard, F.M.3
-
63
-
-
79959420922
-
Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes
-
Schramm, V.L. Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes. Annu. Rev. Biochem. 2011, 80, 703-732.
-
(2011)
Annu. Rev. Biochem
, vol.80
, pp. 703-732
-
-
Schramm, V.L.1
-
64
-
-
0242515838
-
On the generation of catalytic antibodies by transition state analogues
-
Barbany, M.; Gutierrez-de-Teran, H.; Sanz, F.; Villà-Freixa, J.; Warshel, A. On the generation of catalytic antibodies by transition state analogues. ChemBioChem 2003, 4, 277-285.
-
(2003)
ChemBioChem
, vol.4
, pp. 277-285
-
-
Barbany, M.1
Gutierrez-de-Teran, H.2
Sanz, F.3
Villà-Freixa, J.4
Warshel, A.5
-
65
-
-
77749239790
-
Ketosteroid isomerase provides further support to the idea that enzymes work by electrostatic preorganization
-
Kamerlin, S.C.L.; Sharma, P.K.; Chu, Z.T.; Warshel, A. Ketosteroid isomerase provides further support to the idea that enzymes work by electrostatic preorganization. Proc. Natl. Acad. Sci. USA 2010, 107, 4075-4080.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4075-4080
-
-
Kamerlin, S.C.L.1
Sharma, P.K.2
Chu, Z.T.3
Warshel, A.4
-
66
-
-
77957316716
-
An exciting but challenging road ahead for computational enzyme design
-
Baker, D. An exciting but challenging road ahead for computational enzyme design. Protein Sci. 2010, 19, 1817-1819.
-
(2010)
Protein Sci
, vol.19
, pp. 1817-1819
-
-
Baker, D.1
-
67
-
-
56749170877
-
Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination
-
Alexandrova, A.N.; Röthlisberger, D.; Baker, D.; Jorgensen, W.L. Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination. J. Am. Chem. Soc. 2008, 130, 15907-15915.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 15907-15915
-
-
Alexandrova, A.N.1
Röthlisberger, D.2
Baker, D.3
Jorgensen, W.L.4
-
68
-
-
77956357583
-
Evaluation and ranking of enzyme designs
-
Kiss, G.; Röthlisberger, D.; Baker, D.; Houk, K.N. Evaluation and ranking of enzyme designs. Protein Sci. 2010, 19, 1760-1773.
-
(2010)
Protein Sci
, vol.19
, pp. 1760-1773
-
-
Kiss, G.1
Röthlisberger, D.2
Baker, D.3
Houk, K.N.4
-
69
-
-
77954595281
-
The activation strain model of chemical reactivity
-
van Zeist, W.-J.; Bickelhaupt, F.M. The activation strain model of chemical reactivity. Org. Biomol. Chem. 2010, 8, 3118-3127.
-
(2010)
Org. Biomol. Chem
, vol.8
, pp. 3118-3127
-
-
van Zeist, W.-J.1
Bickelhaupt, F.M.2
-
70
-
-
34547457947
-
A new paradigm for electrostatic catalysis of radical reactions in vitamin B12 enzymes
-
Sharma, P.K.; Chu, Z.T.; Olsson, M.H.M.; Warshel, A. A new paradigm for electrostatic catalysis of radical reactions in vitamin B12 enzymes. Proc. Natl. Acad. Sci. USA 2007, 104, 9661-9666.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 9661-9666
-
-
Sharma, P.K.1
Chu, Z.T.2
Olsson, M.H.M.3
Warshel, A.4
-
72
-
-
74849125160
-
The EVB as a quantitative tool for formulating simulations and analyzing biological and chemical reactions
-
Kamerlin, S.C.L.; Warshel, A. The EVB as a quantitative tool for formulating simulations and analyzing biological and chemical reactions. Faraday Discuss. 2010, 145, 71-106.
-
(2010)
Faraday Discuss
, vol.145
, pp. 71-106
-
-
Kamerlin, S.C.L.1
Warshel, A.2
-
73
-
-
79955635010
-
The empirical valence bond model: Theory and applications
-
Kamerlin, S.C.L.; Warshel, A. The empirical valence bond model: Theory and applications, WiRE: Comp. Mol. Sci. 2011, 1, 30-45.
-
(2011)
WiRE: Comp. Mol. Sci
, vol.1
, pp. 30-45
-
-
Kamerlin, S.C.L.1
Warshel, A.2
-
74
-
-
0041600218
-
Simulation of free energy relationships and dynamics of SN2 reactions in aqueous solution
-
Hwang, J.-K.; King, G.; Creighton, S.; Warshel, A. Simulation of free energy relationships and dynamics of SN2 reactions in aqueous solution. J. Am. Chem. Soc. 1988, 110, 5297-5311.
-
(1988)
J. Am. Chem. Soc
, vol.110
, pp. 5297-5311
-
-
Hwang, J.-K.1
King, G.2
Creighton, S.3
Warshel, A.4
-
75
-
-
84857622103
-
Determinants of reactivity and selectivity in soluble epoxide hydrolase from quantum mechanics/molecular mechanics modeling
-
Lonsdale, R.; Hoyle, S.; Grey, D.T.; Ridder, L.; Mulholland, A.J. Determinants of reactivity and selectivity in soluble epoxide hydrolase from quantum mechanics/molecular mechanics modeling. Biochemistry 2012, 51, 1774-1786.
-
(2012)
Biochemistry
, vol.51
, pp. 1774-1786
-
-
Lonsdale, R.1
Hoyle, S.2
Grey, D.T.3
Ridder, L.4
Mulholland, A.J.5
-
76
-
-
79959339177
-
Paradynamics: An effective and reliable coarse-grained model for ab initio QM/MM free energy calculations and related tasks
-
Plotnikov, N.; Kamerlin, S.C.L.; Warshel, A. Paradynamics: An effective and reliable coarse-grained model for ab initio QM/MM free energy calculations and related tasks. J. Phys. Chem. B. 2011, 115, 7950-7962.
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 7950-7962
-
-
Plotnikov, N.1
Kamerlin, S.C.L.2
Warshel, A.3
-
77
-
-
80052149070
-
The catalytic power of dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions
-
Adamczyk, A.J.; Cao, J.; Kamerlin, S.C.L.; Warshel, A. The catalytic power of dihydrofolate reductase and other enzymes arises from electrostatic preorganization, not conformational motions. Proc. Natl. Acad. Sci. USA 2011, 108, 14115-14120.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14115-14120
-
-
Adamczyk, A.J.1
Cao, J.2
Kamerlin, S.C.L.3
Warshel, A.4
-
78
-
-
66549093744
-
The energy gap as a universal reaction coordinate for the study of chemical reactions
-
Mones, L.; Kulhánek, P.; Simon, I.; Laio, A.; Fuxreiter, M. The energy gap as a universal reaction coordinate for the study of chemical reactions. J. Phys. Chem. B 2009, 113, 7867-7873.
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 7867-7873
-
-
Mones, L.1
Kulhánek, P.2
Simon, I.3
Laio, A.4
Fuxreiter, M.5
-
79
-
-
84863230018
-
Iterative approach to computational enzyme design
-
Privett, H.K.; Kiss, G.; Lee, T.M.; Blomberg, R.; Chica, R.A.; Thomas, L.M.; Hilvert, D.; Houk, K.N.; Mayo, S.L. Iterative approach to computational enzyme design. Proc. Natl. Acad. Sci. USA 2012, 109, 3790-3795.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 3790-3795
-
-
Privett, H.K.1
Kiss, G.2
Lee, T.M.3
Blomberg, R.4
Chica, R.A.5
Thomas, L.M.6
Hilvert, D.7
Houk, K.N.8
Mayo, S.L.9
-
80
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
Jensen, R.A. Enzyme recruitment in evolution of new function. Annu. Rev. Microbiol. 1976, 30, 409-425.
-
(1976)
Annu. Rev. Microbiol
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
81
-
-
0033117461
-
Catalytic promiscuity and the evolution of new enzymatic activities
-
O'Brien, P.J.; Herschlag, D. Catalytic promiscuity and the evolution of new enzymatic activities. Chem. Biol. 1999, 6, R91-R105.
-
(1999)
Chem. Biol
, vol.6
-
-
O'Brien, P.J.1
Herschlag, D.2
-
82
-
-
11244281311
-
The "evolvability" of promiscuous protein functions
-
Aharoni, A.; Gaidukov, L.; Khersonsky, O.; McQ Gould, S.; Roodveldt, C.; Tawfik, D.S. The "evolvability" of promiscuous protein functions. Nat. Genet. 2005, 37, 73-76.
-
(2005)
Nat. Genet
, vol.37
, pp. 73-76
-
-
Aharoni, A.1
Gaidukov, L.2
Khersonsky, O.3
McQgould, S.4
Roodveldt, C.5
Tawfik, D.S.6
-
83
-
-
77953623874
-
Enzyme promiscuity: A mechanistic and evolutionary perspective
-
Khersonsky, O.; Tawfik, D.S. Enzyme promiscuity: A mechanistic and evolutionary perspective. Ann. Rev. Biochem. 2010, 79, 471-505.
-
(2010)
Ann. Rev. Biochem
, vol.79
, pp. 471-505
-
-
Khersonsky, O.1
Tawfik, D.S.2
-
84
-
-
84864645362
-
Reconstructing a missing link in the evolution of a recently diverged phosphotriesterase by active-site loop remodelling
-
Afriat-Jurnou, L.; Jackson, C.J.; Tawfik, D.S. Reconstructing a missing link in the evolution of a recently diverged phosphotriesterase by active-site loop remodelling. Biochemistry 2012, 51, 6047-6055.
-
(2012)
Biochemistry
, vol.51
, pp. 6047-6055
-
-
Afriat-Jurnou, L.1
Jackson, C.J.2
Tawfik, D.S.3
-
85
-
-
84855269223
-
Divergence and convergence in enzyme evolution: Parallel evolution of paraoxonases from Quorum-quenching lactonases
-
Elias, M.; Tawfik, D.S. Divergence and convergence in enzyme evolution: Parallel evolution of paraoxonases from Quorum-quenching lactonases. J. Biol. Chem. 2012, 287, 11-20.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 11-20
-
-
Elias, M.1
Tawfik, D.S.2
-
86
-
-
31544477181
-
Design and evolution of new catalytic activity with an existing protein scaffold
-
Park, H.-S.; Nam, S.-H.; Lee, J.K.; Noon, C.N.; Mannervik, B.; Benkovic, S.J.; Kim, H.-S. Design and evolution of new catalytic activity with an existing protein scaffold. Science 2006, 311, 535-538.
-
(2006)
Science
, vol.311
, pp. 535-538
-
-
Park, H.-S.1
Nam, S.-H.2
Lee, J.K.3
Noon, C.N.4
Mannervik, B.5
Benkovic, S.J.6
Kim, H.-S.7
-
87
-
-
79955570791
-
Design of a switchable eliminase
-
Korendovych, I.V.; Kulp, D.W.; Wu, Y.; Cheng, H.; Roder, H.; deGrado, W.F. Design of a switchable eliminase. Proc. Natl. Acad. Sci. USA 2011, 108, 6823-6827.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 6823-6827
-
-
Korendovych, I.V.1
Kulp, D.W.2
Wu, Y.3
Cheng, H.4
Roder, H.5
Degrado, W.F.6
-
88
-
-
67249107701
-
Alteration of enzyme specificity by computational loop remodeling and design
-
Murphy, P.M.; Bolduc, J.M.; Gallaher, J.L.; Stoddard, B.L.; Baker, D. Alteration of enzyme specificity by computational loop remodeling and design. Proc. Natl. Acad. Sci. USA 2009, 106, 9215-9220.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9215-9220
-
-
Murphy, P.M.1
Bolduc, J.M.2
Gallaher, J.L.3
Stoddard, B.L.4
Baker, D.5
-
89
-
-
84862776507
-
Computational redesign of a mononuclear zinc mettaloenzyme for organophosphate hydrolysis
-
Khare, S.D.; Kipnis, Y.; Greisen, P., Jr.; Takeuchi, R.; Ashani, Y.; Goldsmith, M.; Song, Y.; Gallaher, J.L.; Silman, I.; Leader, H. et al. Computational redesign of a mononuclear zinc mettaloenzyme for organophosphate hydrolysis. Nat. Chem. Biol. 2012, 8, 294-300.
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 294-300
-
-
Khare, S.D.1
Kipnis, Y.2
Greisen Jr., P.3
Takeuchi, R.4
Ashani, Y.5
Goldsmith, M.6
Song, Y.7
Gallaher, J.L.8
Silman, I.9
Leader, H.10
-
90
-
-
1942517067
-
Reaction mechanism of soluble epoxide hydrolase: Insights from molecular dynamics simulations
-
Schiøtt, B.; Bruice, T.C. Reaction mechanism of soluble epoxide hydrolase: Insights from molecular dynamics simulations. J. Am. Chem. Soc. 2002, 124, 14558-14570.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 14558-14570
-
-
Schiøtt, B.1
Bruice, T.C.2
-
91
-
-
33751280486
-
Insights into the reaction mechanism of soluble epoxide hydrolase from theoretical active site mutants
-
Hopmann, K.H.; Himo, F. Insights into the reaction mechanism of soluble epoxide hydrolase from theoretical active site mutants. J. Phys. Chem. B 2006, 110, 21299-21310.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 21299-21310
-
-
Hopmann, K.H.1
Himo, F.2
-
92
-
-
84855916144
-
Towards quantitative computer-aided studies of enzymatic enantioselectivity: The case of Candida antarctica lipase A
-
Fruschicheva, M.P.; Warshel, A. Towards quantitative computer-aided studies of enzymatic enantioselectivity: The case of Candida antarctica lipase A. ChemBioChem 2012, 23, 215-223.
-
(2012)
ChemBioChem
, vol.23
, pp. 215-223
-
-
Fruschicheva, M.P.1
Warshel, A.2
-
93
-
-
48249098990
-
Protein design by directed evolution
-
Jäckel, C.; Kast, P.; Hilvert, D. Protein design by directed evolution. Annu. Rev. Biophys. 2008, 37, 153-173.
-
(2008)
Annu. Rev. Biophys
, vol.37
, pp. 153-173
-
-
Jäckel, C.1
Kast, P.2
Hilvert, D.3
-
94
-
-
84865306330
-
Directed enzyme evolution: Beyond the low-hanging fruit
-
Goldsmith, M.; Tawfik, D.S. Directed enzyme evolution: Beyond the low-hanging fruit. Curr. Opin. Struct. Biol. 2012, 22, 406-412.
-
(2012)
Curr. Opin. Struct. Biol
, vol.22
, pp. 406-412
-
-
Goldsmith, M.1
Tawfik, D.S.2
-
95
-
-
0035748334
-
Computationally focusing the directed evolution of proteins
-
Voigt, C.A.; Mayo, S.L.; Arnold, F.H.; Wang, Z.-G. Computationally focusing the directed evolution of proteins. J. Cell. Biochem. Supp. 2001, 37, 58-63.
-
(2001)
J. Cell. Biochem. Supp
, vol.37
, pp. 58-63
-
-
Voigt, C.A.1
Mayo, S.L.2
Arnold, F.H.3
Wang, Z.-G.4
-
96
-
-
0042433113
-
Putting engineering back into protein engineering: Bioinformatics approaches to catalyst design
-
Gustafsson, C.; Govindarajan, S.; Minshull, J. Putting engineering back into protein engineering: Bioinformatics approaches to catalyst design. Curr. Opin. Biotechnol. 2003, 14, 366-370.
-
(2003)
Curr. Opin. Biotechnol
, vol.14
, pp. 366-370
-
-
Gustafsson, C.1
Govindarajan, S.2
Minshull, J.3
-
97
-
-
70450242805
-
Exploring protein fitness landscapes by directed evolution
-
Romero, P.A.; Arnold, F.H. Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell. Biol. 2009, 10, 866-876.
-
(2009)
Nat. Rev. Mol. Cell. Biol
, vol.10
, pp. 866-876
-
-
Romero, P.A.1
Arnold, F.H.2
-
98
-
-
39149125127
-
Enzyme optimization. Moving from blind evolution to statistical exploration of sequence-function space
-
Fox, R.J.; Huisman, G.W. Enzyme optimization. Moving from blind evolution to statistical exploration of sequence-function space. Trends Biotechnol. 2008, 26, 132-138.
-
(2008)
Trends Biotechnol
, vol.26
, pp. 132-138
-
-
Fox, R.J.1
Huisman, G.W.2
-
99
-
-
0035957360
-
Computational method to reduce the search space for directed protein evolution
-
Voigt, C.A.; Mayo, S.L.; Arnold, F.H.; Wang, Z.-G. Computational method to reduce the search space for directed protein evolution. Proc. Natl. Acad. Sci. USA 2001, 98, 3778-3783.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3778-3783
-
-
Voigt, C.A.1
Mayo, S.L.2
Arnold, F.H.3
Wang, Z.-G.4
-
100
-
-
0037627753
-
Identifying residue-residue clashes in protein hybrids by using a second-order mean field approach
-
Moore, G.L.; Maranas, C.D. Identifying residue-residue clashes in protein hybrids by using a second-order mean field approach. Proc. Natl. Acad. Sci. USA 2003, 100, 5091-5096.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5091-5096
-
-
Moore, G.L.1
Maranas, C.D.2
-
101
-
-
0141705742
-
Optimizing the search algorithm for protein engineering by directed evolution
-
Fox, R.; Roy, A.; Govindarajan, S.; Minshull, J.; Gustafsson, C.; Jones, J.T.; Emig, R. Optimizing the search algorithm for protein engineering by directed evolution. Prot. Eng. 2003, 16, 589-597.
-
(2003)
Prot. Eng
, vol.16
, pp. 589-597
-
-
Fox, R.1
Roy, A.2
Govindarajan, S.3
Minshull, J.4
Gustafsson, C.5
Jones, J.T.6
Emig, R.7
-
102
-
-
0024803111
-
The NK model of rugged fitness landscapes and its application to maturation of the immune response
-
Kaufmann, S.A.; Weingerber, E.D. The NK model of rugged fitness landscapes and its application to maturation of the immune response. J. Theor. Biol. 1989, 141, 211-245.
-
(1989)
J. Theor. Biol
, vol.141
, pp. 211-245
-
-
Kaufmann, S.A.1
Weingerber, E.D.2
-
103
-
-
33947095042
-
Improving catalytic function by ProSAR-driven enzyme evolution
-
Fox, R.J.; Davis, S.C.; Mundorff, E.C.; Newman, L.M.; Gavrilovic, V.; Ma, S.K.; Chung, L.M.; Ching, C.; Tam, S.; Muley, S. et al. Improving catalytic function by ProSAR-driven enzyme evolution. Nat. Biotechnol. 2007, 25, 338-344.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 338-344
-
-
Fox, R.J.1
Davis, S.C.2
Mundorff, E.C.3
Newman, L.M.4
Gavrilovic, V.5
Ma, S.K.6
Chung, L.M.7
Ching, C.8
Tam, S.9
Muley, S.10
-
104
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
Lockless, S.W.; Raganathan, R. Evolutionarily conserved pathways of energetic connectivity in protein families. Science 1999, 286, 295-299.
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Raganathan, R.2
-
105
-
-
54249105941
-
Surface sites for engineering allosteric control in proteins
-
Lee, J.; Natarajan, M.; Nashine, V.C.; Socolich, M.; Vo, T.; Russ, W.P.; Benkovic, S.J.; Rangathan, R. Surface sites for engineering allosteric control in proteins. Science 2008, 322, 438-442.
-
(2008)
Science
, vol.322
, pp. 438-442
-
-
Lee, J.1
Natarajan, M.2
Nashine, V.C.3
Socolich, M.4
Vo, T.5
Russ, W.P.6
Benkovic, S.J.7
Rangathan, R.8
-
106
-
-
25644452032
-
Evolutionary information for specifying a protein fold
-
Socolich, M.; Lockless, S.W.; Russ, W.P.; Lee, H.; Gardner, K.H.; Ranganathan, R. Evolutionary information for specifying a protein fold. Nature 2005, 437, 512-518.
-
(2005)
Nature
, vol.437
, pp. 512-518
-
-
Socolich, M.1
Lockless, S.W.2
Russ, W.P.3
Lee, H.4
Gardner, K.H.5
Ranganathan, R.6
-
107
-
-
33745052090
-
Simulating the effect of DNA polymerase mutations on transition-state energetics and fidelity: Evaluating amino acid group contribution and allosteric coupling for ionized residues in human pol β
-
Xiang, Y.; Oelschlaeger, P.; Florian, J.; Goodman, M.F.; Warshel, A. Simulating the effect of DNA polymerase mutations on transition-state energetics and fidelity: Evaluating amino acid group contribution and allosteric coupling for ionized residues in human pol β. Biochemistry 2006, 45, 7036-7048.
-
(2006)
Biochemistry
, vol.45
, pp. 7036-7048
-
-
Xiang, Y.1
Oelschlaeger, P.2
Florian, J.3
Goodman, M.F.4
Warshel, A.5
-
109
-
-
33645691679
-
Evolution of hormone-receptor complexicity by molecular exploitation
-
Bridgham, J.T.; Carroll, S.M.; Thornton, J.W. Evolution of hormone-receptor complexicity by molecular exploitation. Science 2006, 312, 97-101.
-
(2006)
Science
, vol.312
, pp. 97-101
-
-
Bridgham, J.T.1
Carroll, S.M.2
Thornton, J.W.3
-
110
-
-
84857374810
-
Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates
-
Huang, R.; Hippauf, F.; Rohrbeck, D.; Haustein, M.; Wenke, K.; Feike, J.; Sorrelle, N.; Piechulla, B.; Barkman, T.J. Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates. Proc. Natl. Acad. Sci. USA 2012, 109, 2966-2971.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 2966-2971
-
-
Huang, R.1
Hippauf, F.2
Rohrbeck, D.3
Haustein, M.4
Wenke, K.5
Feike, J.6
Sorrelle, N.7
Piechulla, B.8
Barkman, T.J.9
-
112
-
-
84864050202
-
Probing the mutational interplay between primary and promiscuous protein functions: A computational-experimental approach
-
Garcia-Seisdedos, H.; Ibarra-Molero, B.; Sanchez-Ruiz, J.M. Probing the mutational interplay between primary and promiscuous protein functions: A computational-experimental approach. PLoS Comput. Biol. 2012, 8, e1002558.
-
(2012)
PLoS Comput. Biol
, vol.8
-
-
Garcia-Seisdedos, H.1
Ibarra-Molero, B.2
Sanchez-Ruiz, J.M.3
-
113
-
-
57049149647
-
Pareto optimization in computational protein design with multiple objectives
-
Suarez, M.; Tortosa, P.; Carrera, J.; Jaramillo, A. Pareto optimization in computational protein design with multiple objectives. J. Comp. Chem. 2008, 29, 2704-2711.
-
(2008)
J. Comp. Chem
, vol.29
, pp. 2704-2711
-
-
Suarez, M.1
Tortosa, P.2
Carrera, J.3
Jaramillo, A.4
-
114
-
-
65249154106
-
Toward accurate screening in computer-aided enzyme design
-
Roca, M.; Vardi-Kilshtain, A.; Warshel, A. Toward accurate screening in computer-aided enzyme design. Biochemistry 2009, 48, 3046-3056.
-
(2009)
Biochemistry
, vol.48
, pp. 3046-3056
-
-
Roca, M.1
Vardi-Kilshtain, A.2
Warshel, A.3
-
115
-
-
65549084794
-
The empirical valence bond as an effective strategy for computer-aided enzyme design
-
Vardi-Kilshtain, A.; Roca, M.; Warshel, A. The empirical valence bond as an effective strategy for computer-aided enzyme design. Biotechnol. J. 2009, 4, 495-500.
-
(2009)
Biotechnol. J
, vol.4
, pp. 495-500
-
-
Vardi-Kilshtain, A.1
Roca, M.2
Warshel, A.3
-
116
-
-
34250782571
-
Minimalist active-site redesign: Teaching old enzymes new tricks
-
Toscano, M.D.; Woycechowsky, K.J.; Hilvert, D. Minimalist active-site redesign: Teaching old enzymes new tricks. Angew. Chem. Int. Ed. 2007, 46, 4468-4470.
-
(2007)
Angew. Chem. Int. Ed
, vol.46
, pp. 4468-4470
-
-
Toscano, M.D.1
Woycechowsky, K.J.2
Hilvert, D.3
-
117
-
-
0342321950
-
Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease
-
Sham, Y.Y.; Chu, Z.T.; Tao, H.; Warshel, A. Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease. Proteins: Struct. Funct. Genet. 2000, 39, 393-407.
-
(2000)
Proteins: Struct. Funct. Genet
, vol.39
, pp. 393-407
-
-
Sham, Y.Y.1
Chu, Z.T.2
Tao, H.3
Warshel, A.4
-
118
-
-
0026596911
-
Calculations of antibody antigen interactions: Microscopic and semimicroscopic evaluation of the free-energies of binding of phosphorylcholine analogs to Mcpc603
-
Lee, F.S.; Chu, Z.T.; Bolger, M.B.; Warshel, A. Calculations of antibody antigen interactions: Microscopic and semimicroscopic evaluation of the free-energies of binding of phosphorylcholine analogs to Mcpc603. Prot. Eng. 1992, 5, 215-228.
-
(1992)
Prot. Eng
, vol.5
, pp. 215-228
-
-
Lee, F.S.1
Chu, Z.T.2
Bolger, M.B.3
Warshel, A.4
-
119
-
-
36649023306
-
Improving the accuracy of the linear interaction energy method for solvation free energies
-
Almlof, M.; Carlsson, J.; Åqvist, J. Improving the accuracy of the linear interaction energy method for solvation free energies. J. Chem. Theory Comput. 2007, 3, 2162-2175.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 2162-2175
-
-
Almlof, M.1
Carlsson, J.2
Åqvist, J.3
-
120
-
-
0031637651
-
Ligand-binding affinity prediction by linear interaction energy methods
-
Hansson, T.; Marelius, J.; Åqvist, J. Ligand-binding affinity prediction by linear interaction energy methods. J. Comput-Aided Mol. Des. 1998, 12, 27-35.
-
(1998)
J. Comput-Aided Mol. Des
, vol.12
, pp. 27-35
-
-
Hansson, T.1
Marelius, J.2
Åqvist, J.3
-
121
-
-
70349336345
-
Effective approach for calculations of absolute stability of proteins using focused dielectric constants
-
Vicatos, S.; Roca, M.; Warshel, A. Effective approach for calculations of absolute stability of proteins using focused dielectric constants. Proteins 2009, 77, 670-684.
-
(2009)
Proteins
, vol.77
, pp. 670-684
-
-
Vicatos, S.1
Roca, M.2
Warshel, A.3
-
122
-
-
83555177269
-
The linear interaction energy method for the prediction of protein stability changes upon mutation
-
Wickstrom, L.; Gallicchio, E.; Levy, R.M. The linear interaction energy method for the prediction of protein stability changes upon mutation. Proteins 2012, 80, 111-125.
-
(2012)
Proteins
, vol.80
, pp. 111-125
-
-
Wickstrom, L.1
Gallicchio, E.2
Levy, R.M.3
-
123
-
-
0031023842
-
Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables
-
Topham, C.M.; Srinivasan, N.; Blundell, T.L. Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables. Protein Eng. 1997, 10, 7-21.
-
(1997)
Protein Eng
, vol.10
, pp. 7-21
-
-
Topham, C.M.1
Srinivasan, N.2
Blundell, T.L.3
-
124
-
-
33747838537
-
CUPSAT: Prediction of protein stability upon point mutations
-
Parhiban, V.; Gromiha, M.M.; Schomburg, D. CUPSAT: Prediction of protein stability upon point mutations. Nucleic Acids Res. 2006, 34, W239-W242.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Parhiban, V.1
Gromiha, M.M.2
Schomburg, D.3
-
125
-
-
74549207309
-
Assessing computational methods for predicting protein stability upon mutation: Good on average but not in the details
-
Potapov, V.; Cohen, M.; Schreiber, G. Assessing computational methods for predicting protein stability upon mutation: Good on average but not in the details. Protein Eng. 2009, 22, 553-560.
-
(2009)
Protein Eng
, vol.22
, pp. 553-560
-
-
Potapov, V.1
Cohen, M.2
Schreiber, G.3
-
126
-
-
80052213471
-
Machine learning algorithms for predicting protein folding rates and stability of mutant proteins: Comparison with statistical methods
-
Gromiha, M.M.; Huang, L.T. Machine learning algorithms for predicting protein folding rates and stability of mutant proteins: Comparison with statistical methods. Curr. Protein Pept. Sci. 2011, 12, 490-502.
-
(2011)
Curr. Protein Pept. Sci
, vol.12
, pp. 490-502
-
-
Gromiha, M.M.1
Huang, L.T.2
-
127
-
-
77953692230
-
Examining the case for the effect of barrier compression on tunneling, vibrationally enhanced catalysis, catalytic entropy and related issues
-
Kamerlin, S.C.L.; Mavrí, J.; Warshel, A. Examining the case for the effect of barrier compression on tunneling, vibrationally enhanced catalysis, catalytic entropy and related issues. FEBS Lett. 2010, 584, 2759-2766.
-
(2010)
FEBS Lett
, vol.584
, pp. 2759-2766
-
-
Kamerlin, S.C.L.1
Mavrí, J.2
Warshel, A.3
-
128
-
-
77951226274
-
At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis
-
Kamerlin, S.C.L.; Warshel, A. At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis? Proteins: Struct. Func. Bioinformat. 2010, 78, 1339-1375.
-
(2010)
Proteins: Struct. Func. Bioinformat
, vol.78
, pp. 1339-1375
-
-
Kamerlin, S.C.L.1
Warshel, A.2
-
129
-
-
0024713705
-
Enzymes work by solvation substitution rather than by desolvation
-
Warshel, A.; Åqvist, J.; Creighton, S. Enzymes work by solvation substitution rather than by desolvation. Proc. Natl. Acad. Sci. USA 1989, 86, 5820-5824.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 5820-5824
-
-
Warshel, A.1
Åqvist, J.2
Creighton, S.3
-
130
-
-
0041429611
-
Apparent NAC effect in chorismate mutase reflects electrostatic transition state stabilization
-
Štrajbl, M.; Shurki, A.; Kato, M.; Warshel, A. Apparent NAC effect in chorismate mutase reflects electrostatic transition state stabilization. J. Am. Chem. Soc. 2003, 125, 10228-10237.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 10228-10237
-
-
Štrajbl, M.1
Shurki, A.2
Kato, M.3
Warshel, A.4
-
131
-
-
37249032102
-
Dynamic personalities of proteins
-
Henzler-Wildman, K.; Kern, D. Dynamic personalities of proteins. Nature 2007, 450, 964-972.
-
(2007)
Nature
, vol.450
, pp. 964-972
-
-
Henzler-Wildman, K.1
Kern, D.2
-
132
-
-
36849039429
-
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
-
Henzler-Wildman, K.A.; Lei, M.; Thai, V.; Kerns, S.J.; Karplus, M.; Kern, D. A hierarchy of timescales in protein dynamics is linked to enzyme catalysis. Nature 2007, 450, 913-916.
-
(2007)
Nature
, vol.450
, pp. 913-916
-
-
Henzler-Wildman, K.A.1
Lei, M.2
Thai, V.3
Kerns, S.J.4
Karplus, M.5
Kern, D.6
-
133
-
-
36849048228
-
Intrinsic motions along an enzymatic reaction trajectory
-
Henzler-Wildman, K.A.; Thai, V.; Lei, M.; Ott, M.; Wolf-Watz, M.; Fenn, T.; Pozharski, E.; Wilson, M.A.; Petsko, G.A.; Karplus, M. et al. Intrinsic motions along an enzymatic reaction trajectory. Nature 2007, 450, 838-844.
-
(2007)
Nature
, vol.450
, pp. 838-844
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
Fenn, T.6
Pozharski, E.7
Wilson, M.A.8
Petsko, G.A.9
Karplus, M.10
-
134
-
-
79953823548
-
A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis
-
Bhabha, G.; Lee, J.Y.; Ekiert, D.; Gam, J.; Wilson, I.A.; Dyson, H.J.; Benkovic, S.J.; Wright, P.E. A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis. Science 2011, 332, 234-238.
-
(2011)
Science
, vol.332
, pp. 234-238
-
-
Bhabha, G.1
Lee, J.Y.2
Ekiert, D.3
Gam, J.4
Wilson, I.A.5
Dyson, H.J.6
Benkovic, S.J.7
Wright, P.E.8
-
135
-
-
77957753399
-
Choreographing an enzyme's dance
-
Villali, J.; Kern, D. Choreographing an enzyme's dance. Curr. Opin. Chem. Biol. 2010, 14, 636-643.
-
(2010)
Curr. Opin. Chem. Biol
, vol.14
, pp. 636-643
-
-
Villali, J.1
Kern, D.2
-
136
-
-
70350453758
-
Enzyme millisecond conformational dynamics do not catalyze the chemical step
-
Pisliakov, A.V.; Cao, J.; Kamerlin, S.C.L.; Warshel, A. Enzyme millisecond conformational dynamics do not catalyze the chemical step. Proc. Natl. Acad. Sci. USA 2009, 106, 17359-17364.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17359-17364
-
-
Pisliakov, A.V.1
Cao, J.2
Kamerlin, S.C.L.3
Warshel, A.4
-
137
-
-
84857542642
-
Taking Ockham's razor to enzyme dynamics and catalysis
-
Glowacki, D.R.; Harvey, J.N.; Mulholland, A.J. Taking Ockham's razor to enzyme dynamics and catalysis. Nat. Chem. 2012, 4, 169-176.
-
(2012)
Nat. Chem
, vol.4
, pp. 169-176
-
-
Glowacki, D.R.1
Harvey, J.N.2
Mulholland, A.J.3
-
138
-
-
84861514229
-
Protein dynamics and enzyme catalysis: The ghost in the machine
-
Glowacki, D.R.; Harvey, J.N.; Mulholland, A.J. Protein dynamics and enzyme catalysis: The ghost in the machine. Biochem. Soc. Trans. 2012, 1, 515-521.
-
(2012)
Biochem. Soc. Trans
, vol.1
, pp. 515-521
-
-
Glowacki, D.R.1
Harvey, J.N.2
Mulholland, A.J.3
-
139
-
-
80053080232
-
Eppur si muove (Yet it moves)
-
Moliner, V. "Eppur si muove" (Yet it moves). Proc. Natl. Acad. Sci. USA 2011, 108, 15013-15014.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 15013-15014
-
-
Moliner, V.1
-
140
-
-
77957750795
-
Conformational diversity and computational enzyme design
-
Lassila, J.K. Conformational diversity and computational enzyme design. Curr. Opin. Chem. Biol. 2010, 14, 676-682.
-
(2010)
Curr. Opin. Chem. Biol
, vol.14
, pp. 676-682
-
-
Lassila, J.K.1
-
141
-
-
0000230329
-
Energetics of enzyme catalysis
-
Warshel, A. Energetics of enzyme catalysis. Proc. Natl. Acad. Sci. USA 1978, 75, 5250-5254.
-
(1978)
Proc. Natl. Acad. Sci. USA
, vol.75
, pp. 5250-5254
-
-
Warshel, A.1
-
142
-
-
0037207102
-
The catalytic power of ketosteroid isomerase investigated by computer simulation
-
Feierberg, I.; Åqvist, J. The catalytic power of ketosteroid isomerase investigated by computer simulation. Biochemistry 2002, 41, 15728-15735.
-
(2002)
Biochemistry
, vol.41
, pp. 15728-15735
-
-
Feierberg, I.1
Åqvist, J.2
-
143
-
-
33847006589
-
Electrostatic contributions to binding of transition state analogues can be very different from the corresponding contributions to catalysis: Phenolates binding to the oxyanion hole of ketosteroid isomerase
-
Warshel, A.; Sharma, P.K.; Chu, Z.T.; Aqvist, J. Electrostatic contributions to binding of transition state analogues can be very different from the corresponding contributions to catalysis: Phenolates binding to the oxyanion hole of ketosteroid isomerase. Biochemistry 2007, 46, 1466-1476.
-
(2007)
Biochemistry
, vol.46
, pp. 1466-1476
-
-
Warshel, A.1
Sharma, P.K.2
Chu, Z.T.3
Aqvist, J.4
-
144
-
-
33646262869
-
Testing electrostatic complementarity in enzyme catalysis: Hydrogen bonding in the ketosteroid isomerase oxyanion hole
-
Kraut, D.A.; Sigala, P.A.; Pybus, B.; Liu, C.W.; Ringe, D.; Petsko, G.A.; Herschlag, D. Testing electrostatic complementarity in enzyme catalysis: Hydrogen bonding in the ketosteroid isomerase oxyanion hole. PLoS Biol. 2006, 4, 0501-0519.
-
(2006)
PLoS Biol
, vol.4
, pp. 0501-0519
-
-
Kraut, D.A.1
Sigala, P.A.2
Pybus, B.3
Liu, C.W.4
Ringe, D.5
Petsko, G.A.6
Herschlag, D.7
-
145
-
-
70149104037
-
Determining the catalytic role of remote substrate binding interactons in ketosteroid isomerase
-
Schwans, J.P.; Kraut, D.A.; Herschlag, D. Determining the catalytic role of remote substrate binding interactons in ketosteroid isomerase. Proc. Natl. Acad. Sci. USA 2009, 106, 14271-14275.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 14271-14275
-
-
Schwans, J.P.1
Kraut, D.A.2
Herschlag, D.3
-
146
-
-
53849096731
-
Testing geometrical discrimination within an enzyme active site: Constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole
-
Sigala, P.A.; Kraut, D.A.; Caaveiro, J.M.; Pybus, B.; Ruben, E.A.; Ringe, D.; Petsko, G.A.; Herschlag, D. Testing geometrical discrimination within an enzyme active site: Constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole. J. Am. Chem. Soc. 2008, 130, 13696-13708.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 13696-13708
-
-
Sigala, P.A.1
Kraut, D.A.2
Caaveiro, J.M.3
Pybus, B.4
Ruben, E.A.5
Ringe, D.6
Petsko, G.A.7
Herschlag, D.8
-
147
-
-
70349974741
-
Efficient catalytic promiscuity for chemically distinct reactions
-
Babtie, A.C.; Bandyopadhyay, S.; Olguin, L.F.; Hollfelder, F. Efficient catalytic promiscuity for chemically distinct reactions. Angew. Chem. 2009, 48, 3692-3694.
-
(2009)
Angew. Chem
, vol.48
, pp. 3692-3694
-
-
Babtie, A.C.1
Bandyopadhyay, S.2
Olguin, L.F.3
Hollfelder, F.4
-
148
-
-
54249084848
-
A new member of the alkaline phosphatase superfamily with a formylglycine nucleophile: Structural and kinetic characterisation of a phosphate monoester hydrolyase/phosphodiesterase from Rhizobium leguminosarum
-
Jonas, S.; van Loo, B.; Hyvönen, M.; Hollfelder, F. A new member of the alkaline phosphatase superfamily with a formylglycine nucleophile: Structural and kinetic characterisation of a phosphate monoester hydrolyase/phosphodiesterase from Rhizobium leguminosarum. J. Mol. Biol. 2008, 384, 120-136.
-
(2008)
J. Mol. Biol
, vol.384
, pp. 120-136
-
-
Jonas, S.1
van Loo, B.2
Hyvönen, M.3
Hollfelder, F.4
-
149
-
-
54249149606
-
Efficient catalytic promiscuity of an enzyme superfamily: An arylsulfatase shows a rate acceleration of 1013 for phosphate monoester hydrolysis
-
Olguin, L.F.; Askew, S.E.; O'Donoghue, A.C.; Hollfelder, F. Efficient catalytic promiscuity of an enzyme superfamily: An arylsulfatase shows a rate acceleration of 1013 for phosphate monoester hydrolysis. J. Am. Chem. Soc. 2008, 130, 16547-16555.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 16547-16555
-
-
Olguin, L.F.1
Askew, S.E.2
O'Donoghue, A.C.3
Hollfelder, F.4
-
150
-
-
77649239492
-
An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily
-
van Loo, B.; Jonas, S.; Babtie, A.C.; Benjdia, A.; Berteau, O.; Hyvönen, M.; Hollfelder, F. An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily. Proc. Natl. Acad. Sci. USA 2010, 107, 2740-2745.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 2740-2745
-
-
van Loo, B.1
Jonas, S.2
Babtie, A.C.3
Benjdia, A.4
Berteau, O.5
Hyvönen, M.6
Hollfelder, F.7
-
151
-
-
84857781926
-
Examining the promiscuous phosphomonoesterase activity of Pseudomonas aeruginosa arylsulfatase: Comparison to analogous phosphatases
-
Luo, J.; van Loo, B.; Kamerlin, S.C.L. Examining the promiscuous phosphomonoesterase activity of Pseudomonas aeruginosa arylsulfatase: Comparison to analogous phosphatases. Proteins: Struct. Func. Bioinformat. 2012, 80, 1211-1226.
-
(2012)
Proteins: Struct. Func. Bioinformat
, vol.80
, pp. 1211-1226
-
-
Luo, J.1
van Loo, B.2
Kamerlin, S.C.L.3
-
152
-
-
84861637850
-
Catalytic promiscuity in pseudomonas aeruginosa arylsulfatase as an example of chemistry-driven protein evolution
-
Luo, J.; van Loo, B.; Kamerlin, S.C.L. Catalytic promiscuity in pseudomonas aeruginosa arylsulfatase as an example of chemistry-driven protein evolution. FEBS Lett. 2012, 11, 1622-1630.
-
(2012)
FEBS Lett
, vol.11
, pp. 1622-1630
-
-
Luo, J.1
van Loo, B.2
Kamerlin, S.C.L.3
-
153
-
-
84859267247
-
Catalytic versatility and backups in enzyme active sites: The case of serum paraoxonase 1
-
Ben-David, M.; Elias, M.; Filippi, J.J.; Duñach, E.; silman, I.; Sussman, J.L.; Tawfik, D.S. Catalytic versatility and backups in enzyme active sites: The case of serum paraoxonase 1. J. Mol. Biol. 2012, 418, 181-196.
-
(2012)
J. Mol. Biol
, vol.418
, pp. 181-196
-
-
Ben-David, M.1
Elias, M.2
Filippi, J.J.3
Duñach, E.4
Silman, I.5
Sussman, J.L.6
Tawfik, D.S.7
-
154
-
-
10044248344
-
Catalytic promiscuity in biocatalysis: Using old enzymes to form new bonds and follow new pathways
-
Bornscheuer, U.T.; Kazlauskas, R.J. Catalytic promiscuity in biocatalysis: Using old enzymes to form new bonds and follow new pathways. Angew. Chem. Int. Ed. 2004, 43, 6032-6040.
-
(2004)
Angew. Chem. Int. Ed
, vol.43
, pp. 6032-6040
-
-
Bornscheuer, U.T.1
Kazlauskas, R.J.2
-
155
-
-
49249121750
-
Engineering enzymes for biocatalysis
-
Dalby, P.A. Engineering enzymes for biocatalysis. Recent Pat. Biotechnol. 2007, 1, 1-9.
-
(2007)
Recent Pat. Biotechnol
, vol.1
, pp. 1-9
-
-
Dalby, P.A.1
|