-
1
-
-
84974606818
-
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
-
Abudayyeh, O.O., Gootenberg, J.S., Konermann, S., Joung, J., Slaymaker, I.M., Cox, D.B.T., Shmakov, S., Makarova, K.S., Semenova, E., Minakhin, L., et al. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector. Science, 353, 2016, aaf5573.
-
(2016)
Science
, vol.353
, pp. aaf5573
-
-
Abudayyeh, O.O.1
Gootenberg, J.S.2
Konermann, S.3
Joung, J.4
Slaymaker, I.M.5
Cox, D.B.T.6
Shmakov, S.7
Makarova, K.S.8
Semenova, E.9
Minakhin, L.10
-
2
-
-
85006345820
-
A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
-
Adamson, B., Norman, T.M., Jost, M., Cho, M.Y., Nuñez, J.K., Chen, Y., Villalta, J.E., Gilbert, L.A., Horlbeck, M.A., Hein, M.Y., et al. A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response. Cell 167 (2016), 1867–1882.e21.
-
(2016)
Cell
, vol.167
, pp. 1867-1882.e21
-
-
Adamson, B.1
Norman, T.M.2
Jost, M.3
Cho, M.Y.4
Nuñez, J.K.5
Chen, Y.6
Villalta, J.E.7
Gilbert, L.A.8
Horlbeck, M.A.9
Hein, M.Y.10
-
3
-
-
84982918709
-
Genomic copy number dictates a gene-independent cell response to CRISPR/Cas9 targeting
-
Aguirre, A.J., Meyers, R.M., Weir, B.A., Vazquez, F., Zhang, C.-Z., Ben-David, U., Cook, A., Ha, G., Harrington, W.F., Doshi, M.B., et al. Genomic copy number dictates a gene-independent cell response to CRISPR/Cas9 targeting. Cancer Discov. 6 (2016), 914–929.
-
(2016)
Cancer Discov.
, vol.6
, pp. 914-929
-
-
Aguirre, A.J.1
Meyers, R.M.2
Weir, B.A.3
Vazquez, F.4
Zhang, C.-Z.5
Ben-David, U.6
Cook, A.7
Ha, G.8
Harrington, W.F.9
Doshi, M.B.10
-
4
-
-
84986898390
-
Applications of CRISPR technologies in research and beyond
-
Barrangou, R., Doudna, J.A., Applications of CRISPR technologies in research and beyond. Nat. Biotechnol. 34 (2016), 933–941.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 933-941
-
-
Barrangou, R.1
Doudna, J.A.2
-
5
-
-
85013218660
-
Expanding the CRISPR Toolbox: Targeting RNA with Cas13b
-
Barrangou, R., Gersbach, C.A., Expanding the CRISPR Toolbox: Targeting RNA with Cas13b. Mol. Cell 65 (2017), 582–584.
-
(2017)
Mol. Cell
, vol.65
, pp. 582-584
-
-
Barrangou, R.1
Gersbach, C.A.2
-
6
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D.A., Horvath, P., CRISPR provides acquired resistance against viruses in prokaryotes. Science 315 (2007), 1709–1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
7
-
-
84937857359
-
Single-cell chromatin accessibility reveals principles of regulatory variation
-
Buenrostro, J.D., Wu, B., Litzenburger, U.M., Ruff, D., Gonzales, M.L., Snyder, M.P., Chang, H.Y., Greenleaf, W.J., Single-cell chromatin accessibility reveals principles of regulatory variation. Nature 523 (2015), 486–490.
-
(2015)
Nature
, vol.523
, pp. 486-490
-
-
Buenrostro, J.D.1
Wu, B.2
Litzenburger, U.M.3
Ruff, D.4
Gonzales, M.L.5
Snyder, M.P.6
Chang, H.Y.7
Greenleaf, W.J.8
-
8
-
-
85012284419
-
New CRISPR-Cas systems from uncultivated microbes
-
Burstein, D., Harrington, L.B., Strutt, S.C., Probst, A.J., Anantharaman, K., Thomas, B.C., Doudna, J.A., Banfield, J.F., New CRISPR-Cas systems from uncultivated microbes. Nature 542 (2017), 237–241.
-
(2017)
Nature
, vol.542
, pp. 237-241
-
-
Burstein, D.1
Harrington, L.B.2
Strutt, S.C.3
Probst, A.J.4
Anantharaman, K.5
Thomas, B.C.6
Doudna, J.A.7
Banfield, J.F.8
-
9
-
-
84946925193
-
BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis
-
Canver, M.C., Smith, E.C., Sher, F., Pinello, L., Sanjana, N.E., Shalem, O., Chen, D.D., Schupp, P.G., Vinjamur, D.S., Garcia, S.P., et al. BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis. Nature 527 (2015), 192–197.
-
(2015)
Nature
, vol.527
, pp. 192-197
-
-
Canver, M.C.1
Smith, E.C.2
Sher, F.3
Pinello, L.4
Sanjana, N.E.5
Shalem, O.6
Chen, D.D.7
Schupp, P.G.8
Vinjamur, D.S.9
Garcia, S.P.10
-
10
-
-
85013192654
-
Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci
-
Canver, M.C., Lessard, S., Pinello, L., Wu, Y., Ilboudo, Y., Stern, E.N., Needleman, A.J., Galactéros, F., Brugnara, C., Kutlar, A., et al. Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci. Nat. Genet. 49 (2017), 625–634.
-
(2017)
Nat. Genet.
, vol.49
, pp. 625-634
-
-
Canver, M.C.1
Lessard, S.2
Pinello, L.3
Wu, Y.4
Ilboudo, Y.5
Stern, E.N.6
Needleman, A.J.7
Galactéros, F.8
Brugnara, C.9
Kutlar, A.10
-
11
-
-
85058833168
-
Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments
-
Canver, M.C., Haeussler, M., Bauer, D.E., Orkin, S.H., Sanjana, N.E., Shalem, O., Yuan, G.-C., Zhang, F., Concordet, J.-P., Pinello, L., Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments. bioRxiv, 2017, 10.1101/125245.
-
(2017)
bioRxiv
-
-
Canver, M.C.1
Haeussler, M.2
Bauer, D.E.3
Orkin, S.H.4
Sanjana, N.E.5
Shalem, O.6
Yuan, G.-C.7
Zhang, F.8
Concordet, J.-P.9
Pinello, L.10
-
12
-
-
84926521955
-
Highly efficient Cas9-mediated transcriptional programming
-
Chavez, A., Scheiman, J., Vora, S., Pruitt, B.W., Tuttle, M., P R Iyer, E., Lin, S., Kiani, S., Guzman, C.D., Wiegand, D.J., et al. Highly efficient Cas9-mediated transcriptional programming. Nat. Methods 12 (2015), 326–328.
-
(2015)
Nat. Methods
, vol.12
, pp. 326-328
-
-
Chavez, A.1
Scheiman, J.2
Vora, S.3
Pruitt, B.W.4
Tuttle, M.5
P R Iyer, E.6
Lin, S.7
Kiani, S.8
Guzman, C.D.9
Wiegand, D.J.10
-
13
-
-
84969791285
-
Comparison of Cas9 activators in multiple species
-
Chavez, A., Tuttle, M., Pruitt, B.W., Ewen-Campen, B., Chari, R., Ter-Ovanesyan, D., Haque, S.J., Cecchi, R.J., Kowal, E.J.K., Buchthal, J., et al. Comparison of Cas9 activators in multiple species. Nat. Methods 13 (2016), 563–567.
-
(2016)
Nat. Methods
, vol.13
, pp. 563-567
-
-
Chavez, A.1
Tuttle, M.2
Pruitt, B.W.3
Ewen-Campen, B.4
Chari, R.5
Ter-Ovanesyan, D.6
Haque, S.J.7
Cecchi, R.J.8
Kowal, E.J.K.9
Buchthal, J.10
-
14
-
-
84925008880
-
Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis
-
Chen, S., Sanjana, N.E., Zheng, K., Shalem, O., Lee, K., Shi, X., Scott, D.A., Song, J., Pan, J.Q., Weissleder, R., et al. Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis. Cell 160 (2015), 1246–1260.
-
(2015)
Cell
, vol.160
, pp. 1246-1260
-
-
Chen, S.1
Sanjana, N.E.2
Zheng, K.3
Shalem, O.4
Lee, K.5
Shi, X.6
Scott, D.A.7
Song, J.8
Pan, J.Q.9
Weissleder, R.10
-
15
-
-
85017213844
-
Targeted activation of diverse CRISPR-Cas systems for mammalian genome editing via proximal CRISPR targeting
-
Chen, F., Ding, X., Feng, Y., Seebeck, T., Jiang, Y., Davis, G.D., Targeted activation of diverse CRISPR-Cas systems for mammalian genome editing via proximal CRISPR targeting. Nat. Commun., 8, 2017, 14958.
-
(2017)
Nat. Commun.
, vol.8
, pp. 14958
-
-
Chen, F.1
Ding, X.2
Feng, Y.3
Seebeck, T.4
Jiang, Y.5
Davis, G.D.6
-
16
-
-
85030706867
-
Enhanced proofreading governs CRISPR-Cas9 targeting accuracy
-
Chen, J.S., Dagdas, Y.S., Kleinstiver, B.P., Welch, M.M., Harrington, L.B., Sternberg, S.H., Joung, K.J., Yildiz, A., Doudna, J.A., Enhanced proofreading governs CRISPR-Cas9 targeting accuracy. bioRxiv, 2017, 10.1101/160036.
-
(2017)
bioRxiv
-
-
Chen, J.S.1
Dagdas, Y.S.2
Kleinstiver, B.P.3
Welch, M.M.4
Harrington, L.B.5
Sternberg, S.H.6
Joung, K.J.7
Yildiz, A.8
Doudna, J.A.9
-
17
-
-
85027285721
-
Using local chromatin structure to improve CRISPR/Cas9 efficiency in zebrafish
-
Chen, Y., Zeng, S., Hu, R., Wang, X., Huang, W., Liu, J., Wang, L., Liu, G., Cao, Y., Zhang, Y., Using local chromatin structure to improve CRISPR/Cas9 efficiency in zebrafish. PLoS ONE, 12, 2017, e0182528.
-
(2017)
PLoS ONE
, vol.12
, pp. e0182528
-
-
Chen, Y.1
Zeng, S.2
Hu, R.3
Wang, X.4
Huang, W.5
Liu, J.6
Wang, L.7
Liu, G.8
Cao, Y.9
Zhang, Y.10
-
18
-
-
84885180675
-
Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system
-
Cheng, A.W., Wang, H., Yang, H., Shi, L., Katz, Y., Theunissen, T.W., Rangarajan, S., Shivalila, C.S., Dadon, D.B., Jaenisch, R., Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system. Cell Res. 23 (2013), 1163–1171.
-
(2013)
Cell Res.
, vol.23
, pp. 1163-1171
-
-
Cheng, A.W.1
Wang, H.2
Yang, H.3
Shi, L.4
Katz, Y.5
Theunissen, T.W.6
Rangarajan, S.7
Shivalila, C.S.8
Dadon, D.B.9
Jaenisch, R.10
-
19
-
-
85029931994
-
AAV-mediated direct in vivo CRISPR screen identifies functional suppressors in glioblastoma
-
Published online August 14, 2017
-
Chow, R.D., Guzman, C.D., Wang, G., Schmidt, F., Youngblood, M.W., Ye, L., Errami, Y., Dong, M.B., Martinez, M.A., Zhang, S., et al. AAV-mediated direct in vivo CRISPR screen identifies functional suppressors in glioblastoma. Nat. Neurosci., 2017, 10.1038/nn.4620 Published online August 14, 2017.
-
(2017)
Nat. Neurosci.
-
-
Chow, R.D.1
Guzman, C.D.2
Wang, G.3
Schmidt, F.4
Youngblood, M.W.5
Ye, L.6
Errami, Y.7
Dong, M.B.8
Martinez, M.A.9
Zhang, S.10
-
20
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F.A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P.D., Wu, X., Jiang, W., Marraffini, L.A., Zhang, F., Multiplex genome engineering using CRISPR/Cas systems. Science 339 (2013), 819–823.
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
Hsu, P.D.7
Wu, X.8
Jiang, W.9
Marraffini, L.A.10
Zhang, F.11
-
21
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P., Cheng, A.W., Welstead, G.G., Kooistra, T., Carey, B.W., Steine, E.J., Hanna, J., Lodato, M.A., Frampton, G.M., Sharp, P.A., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107 (2010), 21931–21936.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
22
-
-
84983417013
-
Increasing the performance of pooled CRISPR-Cas9 drop-out screening
-
Cross, B.C.S., Lawo, S., Archer, C.R., Hunt, J.R., Yarker, J.L., Riccombeni, A., Little, A.S., McCarthy, N.J., Moore, J.D., Increasing the performance of pooled CRISPR-Cas9 drop-out screening. Sci. Rep., 6, 2016, 31782.
-
(2016)
Sci. Rep.
, vol.6
, pp. 31782
-
-
Cross, B.C.S.1
Lawo, S.2
Archer, C.R.3
Hunt, J.R.4
Yarker, J.L.5
Riccombeni, A.6
Little, A.S.7
McCarthy, N.J.8
Moore, J.D.9
-
23
-
-
84930006926
-
Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing
-
Cusanovich, D.A., Daza, R., Adey, A., Pliner, H.A., Christiansen, L., Gunderson, K.L., Steemers, F.J., Trapnell, C., Shendure, J., Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing. Science 348 (2015), 910–914.
-
(2015)
Science
, vol.348
, pp. 910-914
-
-
Cusanovich, D.A.1
Daza, R.2
Adey, A.3
Pliner, H.A.4
Christiansen, L.5
Gunderson, K.L.6
Steemers, F.J.7
Trapnell, C.8
Shendure, J.9
-
24
-
-
85028526575
-
Non-coding genetic variation in cancer
-
Cuykendall, T.N., Rubin, M.A., Khurana, E., Non-coding genetic variation in cancer. Curr. Opin. Syst. Biol. 1 (2017), 9–15.
-
(2017)
Curr. Opin. Syst. Biol.
, vol.1
, pp. 9-15
-
-
Cuykendall, T.N.1
Rubin, M.A.2
Khurana, E.3
-
25
-
-
85010898455
-
Pooled CRISPR screening with single-cell transcriptome readout
-
Datlinger, P., Rendeiro, A.F., Schmidl, C., Krausgruber, T., Traxler, P., Klughammer, J., Schuster, L.C., Kuchler, A., Alpar, D., Bock, C., Pooled CRISPR screening with single-cell transcriptome readout. Nat. Methods 14 (2017), 297–301.
-
(2017)
Nat. Methods
, vol.14
, pp. 297-301
-
-
Datlinger, P.1
Rendeiro, A.F.2
Schmidl, C.3
Krausgruber, T.4
Traxler, P.5
Klughammer, J.6
Schuster, L.C.7
Kuchler, A.8
Alpar, D.9
Bock, C.10
-
26
-
-
84960387483
-
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
-
Diao, Y., Li, B., Meng, Z., Jung, I., Lee, A.Y., Dixon, J., Maliskova, L., Guan, K.L., Shen, Y., Ren, B., A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening. Genome Res. 26 (2016), 397–405.
-
(2016)
Genome Res.
, vol.26
, pp. 397-405
-
-
Diao, Y.1
Li, B.2
Meng, Z.3
Jung, I.4
Lee, A.Y.5
Dixon, J.6
Maliskova, L.7
Guan, K.L.8
Shen, Y.9
Ren, B.10
-
27
-
-
85017510953
-
A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
-
Diao, Y., Fang, R., Li, B., Meng, Z., Yu, J., Qiu, Y., Lin, K.C., Huang, H., Liu, T., Marina, R.J., et al. A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells. Nat. Methods 14 (2017), 629–635.
-
(2017)
Nat. Methods
, vol.14
, pp. 629-635
-
-
Diao, Y.1
Fang, R.2
Li, B.3
Meng, Z.4
Yu, J.5
Qiu, Y.6
Lin, K.C.7
Huang, H.8
Liu, T.9
Marina, R.J.10
-
28
-
-
85006488344
-
Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens
-
Dixit, A., Parnas, O., Li, B., Chen, J., Fulco, C.P., Jerby-Arnon, L., Marjanovic, N.D., Dionne, D., Burks, T., Raychowdhury, R., et al. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens. Cell 167 (2016), 1853–1866.e17.
-
(2016)
Cell
, vol.167
, pp. 1853-1866.e17
-
-
Dixit, A.1
Parnas, O.2
Li, B.3
Chen, J.4
Fulco, C.P.5
Jerby-Arnon, L.6
Marjanovic, N.D.7
Dionne, D.8
Burks, T.9
Raychowdhury, R.10
-
29
-
-
84921540377
-
Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation
-
Doench, J.G., Hartenian, E., Graham, D.B., Tothova, Z., Hegde, M., Smith, I., Sullender, M., Ebert, B.L., Xavier, R.J., Root, D.E., Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation. Nat. Biotechnol. 32 (2014), 1262–1267.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1262-1267
-
-
Doench, J.G.1
Hartenian, E.2
Graham, D.B.3
Tothova, Z.4
Hegde, M.5
Smith, I.6
Sullender, M.7
Ebert, B.L.8
Xavier, R.J.9
Root, D.E.10
-
30
-
-
84957605863
-
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
-
Doench, J.G., Fusi, N., Sullender, M., Hegde, M., Vaimberg, E.W., Donovan, K.F., Smith, I., Tothova, Z., Wilen, C., Orchard, R., et al. Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9. Nat. Biotechnol. 34 (2016), 184–191.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 184-191
-
-
Doench, J.G.1
Fusi, N.2
Sullender, M.3
Hegde, M.4
Vaimberg, E.W.5
Donovan, K.F.6
Smith, I.7
Tothova, Z.8
Wilen, C.9
Orchard, R.10
-
31
-
-
85010792406
-
Creation of novel protein variants with CRISPR/Cas9-mediated mutagenesis: Turning a screening by-product into a discovery tool
-
Donovan, K.F., Hegde, M., Sullender, M., Vaimberg, E.W., Johannessen, C.M., Root, D.E., Doench, J.G., Creation of novel protein variants with CRISPR/Cas9-mediated mutagenesis: Turning a screening by-product into a discovery tool. PLoS ONE, 12, 2017, e0170445.
-
(2017)
PLoS ONE
, vol.12
, pp. e0170445
-
-
Donovan, K.F.1
Hegde, M.2
Sullender, M.3
Vaimberg, E.W.4
Johannessen, C.M.5
Root, D.E.6
Doench, J.G.7
-
32
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Dunham, I., Kundaje, A., Aldred, S.F., Collins, P.J., Davis, C., Doyle, F., Epstein, C.B., Frietze, S., Harrow, J., Kaul, R., et al., ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489 (2012), 57–74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
33
-
-
84991728709
-
Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection
-
East-Seletsky, A., O'Connell, M.R., Knight, S.C., Burstein, D., Cate, J.H.D., Tjian, R., Doudna, J.A., Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection. Nature 538 (2016), 270–273.
-
(2016)
Nature
, vol.538
, pp. 270-273
-
-
East-Seletsky, A.1
O'Connell, M.R.2
Knight, S.C.3
Burstein, D.4
Cate, J.H.D.5
Tjian, R.6
Doudna, J.A.7
-
34
-
-
84890231680
-
Beyond GWASs: illuminating the dark road from association to function
-
Edwards, S.L., Beesley, J., French, J.D., Dunning, A.M., Beyond GWASs: illuminating the dark road from association to function. Am. J. Hum. Genet. 93 (2013), 779–797.
-
(2013)
Am. J. Hum. Genet.
, vol.93
, pp. 779-797
-
-
Edwards, S.L.1
Beesley, J.2
French, J.D.3
Dunning, A.M.4
-
35
-
-
84907257107
-
Saturation editing of genomic regions by multiplex homology-directed repair
-
Findlay, G.M., Boyle, E.A., Hause, R.J., Klein, J.C., Shendure, J., Saturation editing of genomic regions by multiplex homology-directed repair. Nature 513 (2014), 120–123.
-
(2014)
Nature
, vol.513
, pp. 120-123
-
-
Findlay, G.M.1
Boyle, E.A.2
Hause, R.J.3
Klein, J.C.4
Shendure, J.5
-
36
-
-
84990852918
-
Systematic mapping of functional enhancer-promoter connections with CRISPR interference
-
Fulco, C.P., Munschauer, M., Anyoha, R., Munson, G., Grossman, S.R., Perez, E.M., Kane, M., Cleary, B., Lander, E.S., Engreitz, J.M., Systematic mapping of functional enhancer-promoter connections with CRISPR interference. Science 354 (2016), 769–773.
-
(2016)
Science
, vol.354
, pp. 769-773
-
-
Fulco, C.P.1
Munschauer, M.2
Anyoha, R.3
Munson, G.4
Grossman, S.R.5
Perez, E.M.6
Kane, M.7
Cleary, B.8
Lander, E.S.9
Engreitz, J.M.10
-
37
-
-
85022143145
-
Engineered Cpf1 variants with altered PAM specificities
-
Gao, L., Cox, D.B.T., Yan, W.X., Manteiga, J.C., Schneider, M.W., Yamano, T., Nishimasu, H., Nureki, O., Crosetto, N., Zhang, F., Engineered Cpf1 variants with altered PAM specificities. Nat. Biotechnol. 35 (2017), 789–792.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 789-792
-
-
Gao, L.1
Cox, D.B.T.2
Yan, W.X.3
Manteiga, J.C.4
Schneider, M.W.5
Yamano, T.6
Nishimasu, H.7
Nureki, O.8
Crosetto, N.9
Zhang, F.10
-
38
-
-
85023635261
-
CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions
-
Gasperini, M., Findlay, G.M., McKenna, A., Milbank, J.H., Lee, C., Zhang, M.D., Cusanovich, D.A., Shendure, J., CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions. Am. J. Hum. Genet. 101 (2017), 192–205.
-
(2017)
Am. J. Hum. Genet.
, vol.101
, pp. 192-205
-
-
Gasperini, M.1
Findlay, G.M.2
McKenna, A.3
Milbank, J.H.4
Lee, C.5
Zhang, M.D.6
Cusanovich, D.A.7
Shendure, J.8
-
39
-
-
84880571335
-
CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes
-
Gilbert, L.A., Larson, M.H., Morsut, L., Liu, Z., Brar, G.A., Torres, S.E., Stern-Ginossar, N., Brandman, O., Whitehead, E.H., Doudna, J.A., et al. CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 154 (2013), 442–451.
-
(2013)
Cell
, vol.154
, pp. 442-451
-
-
Gilbert, L.A.1
Larson, M.H.2
Morsut, L.3
Liu, Z.4
Brar, G.A.5
Torres, S.E.6
Stern-Ginossar, N.7
Brandman, O.8
Whitehead, E.H.9
Doudna, J.A.10
-
40
-
-
84908352138
-
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
-
Gilbert, L.A., Horlbeck, M.A., Adamson, B., Villalta, J.E., Chen, Y., Whitehead, E.H., Guimaraes, C., Panning, B., Ploegh, H.L., Bassik, M.C., et al. Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation. Cell 159 (2014), 647–661.
-
(2014)
Cell
, vol.159
, pp. 647-661
-
-
Gilbert, L.A.1
Horlbeck, M.A.2
Adamson, B.3
Villalta, J.E.4
Chen, Y.5
Whitehead, E.H.6
Guimaraes, C.7
Panning, B.8
Ploegh, H.L.9
Bassik, M.C.10
-
41
-
-
85028414131
-
An upper limit on the functional fraction of the human genome
-
Graur, D., An upper limit on the functional fraction of the human genome. Genome Biol. Evol. 9 (2017), 1880–1885.
-
(2017)
Genome Biol. Evol.
, vol.9
, pp. 1880-1885
-
-
Graur, D.1
-
42
-
-
84890526238
-
Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
-
Guo, H., Zhu, P., Wu, X., Li, X., Wen, L., Tang, F., Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing. Genome Res. 23 (2013), 2126–2135.
-
(2013)
Genome Res.
, vol.23
, pp. 2126-2135
-
-
Guo, H.1
Zhu, P.2
Wu, X.3
Li, X.4
Wen, L.5
Tang, F.6
-
43
-
-
85018234086
-
Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions
-
Han, K., Jeng, E.E., Hess, G.T., Morgens, D.W., Li, A., Bassik, M.C., Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions. Nat. Biotechnol. 35 (2017), 463–474.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 463-474
-
-
Han, K.1
Jeng, E.E.2
Hess, G.T.3
Morgens, D.W.4
Li, A.5
Bassik, M.C.6
-
44
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow, J., Frankish, A., Gonzalez, J.M., Tapanari, E., Diekhans, M., Kokocinski, F., Aken, B.L., Barrell, D., Zadissa, A., Searle, S., et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 22 (2012), 1760–1774.
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
-
45
-
-
85027283916
-
Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens
-
Hart, T., Tong, A.H.Y., Chan, K., Van Leeuwen, J., Seetharaman, A., Aregger, M., Chandrashekhar, M., Hustedt, N., Seth, S., Noonan, A., et al. Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens. G3 (Bethesda) 7 (2017), 2719–2727.
-
(2017)
G3 (Bethesda)
, vol.7
, pp. 2719-2727
-
-
Hart, T.1
Tong, A.H.Y.2
Chan, K.3
Van Leeuwen, J.4
Seetharaman, A.5
Aregger, M.6
Chandrashekhar, M.7
Hustedt, N.8
Seth, S.9
Noonan, A.10
-
46
-
-
84992745786
-
Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells
-
Hess, G.T., Frésard, L., Han, K., Lee, C.H., Li, A., Cimprich, K.A., Montgomery, S.B., Bassik, M.C., Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells. Nat. Methods 13 (2016), 1036–1042.
-
(2016)
Nat. Methods
, vol.13
, pp. 1036-1042
-
-
Hess, G.T.1
Frésard, L.2
Han, K.3
Lee, C.H.4
Li, A.5
Cimprich, K.A.6
Montgomery, S.B.7
Bassik, M.C.8
-
47
-
-
84929135130
-
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
-
Hilton, I.B., D'Ippolito, A.M., Vockley, C.M., Thakore, P.I., Crawford, G.E., Reddy, T.E., Gersbach, C.A., Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers. Nat. Biotechnol. 33 (2015), 510–517.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 510-517
-
-
Hilton, I.B.1
D'Ippolito, A.M.2
Vockley, C.M.3
Thakore, P.I.4
Crawford, G.E.5
Reddy, T.E.6
Gersbach, C.A.7
-
48
-
-
84960171833
-
Activation of proto-oncogenes by disruption of chromosome neighborhoods
-
Hnisz, D., Weintraub, A.S., Day, D.S., Valton, A.L., Bak, R.O., Li, C.H., Goldmann, J., Lajoie, B.R., Fan, Z.P., Sigova, A.A., et al. Activation of proto-oncogenes by disruption of chromosome neighborhoods. Science 351 (2016), 1454–1458.
-
(2016)
Science
, vol.351
, pp. 1454-1458
-
-
Hnisz, D.1
Weintraub, A.S.2
Day, D.S.3
Valton, A.L.4
Bak, R.O.5
Li, C.H.6
Goldmann, J.7
Lajoie, B.R.8
Fan, Z.P.9
Sigova, A.A.10
-
49
-
-
84936077333
-
Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines
-
Ho, T.T., Zhou, N., Huang, J., Koirala, P., Xu, M., Fung, R., Wu, F., Mo, Y.Y., Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines. Nucleic Acids Res., 43, 2015, e17.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. e17
-
-
Ho, T.T.1
Zhou, N.2
Huang, J.3
Koirala, P.4
Xu, M.5
Fung, R.6
Wu, F.7
Mo, Y.Y.8
-
50
-
-
84969195094
-
Nucleosomes impede Cas9 access to DNA in vivo and in vitro
-
Horlbeck, M.A., Witkowsky, L.B., Guglielmi, B., Replogle, J.M., Gilbert, L.A., Villalta, J.E., Torigoe, S.E., Tjian, R., Weissman, J.S., Nucleosomes impede Cas9 access to DNA in vivo and in vitro. eLife, 5, 2016, e12677.
-
(2016)
eLife
, vol.5
, pp. e12677
-
-
Horlbeck, M.A.1
Witkowsky, L.B.2
Guglielmi, B.3
Replogle, J.M.4
Gilbert, L.A.5
Villalta, J.E.6
Torigoe, S.E.7
Tjian, R.8
Weissman, J.S.9
-
51
-
-
84884165315
-
DNA targeting specificity of RNA-guided Cas9 nucleases
-
Hsu, P.D., Scott, D.A., Weinstein, J.A., Ran, F.A., Konermann, S., Agarwala, V., Li, Y., Fine, E.J., Wu, X., Shalem, O., et al. DNA targeting specificity of RNA-guided Cas9 nucleases. Nat. Biotechnol. 31 (2013), 827–832.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 827-832
-
-
Hsu, P.D.1
Scott, D.A.2
Weinstein, J.A.3
Ran, F.A.4
Konermann, S.5
Agarwala, V.6
Li, Y.7
Fine, E.J.8
Wu, X.9
Shalem, O.10
-
52
-
-
85006269827
-
Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
-
Jaitin, D.A., Weiner, A., Yofe, I., Lara-Astiaso, D., Keren-Shaul, H., David, E., Salame, T.M., Tanay, A., van Oudenaarden, A., Amit, I., Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq. Cell 167 (2016), 1883–1896.e15.
-
(2016)
Cell
, vol.167
, pp. 1883-1896.e15
-
-
Jaitin, D.A.1
Weiner, A.2
Yofe, I.3
Lara-Astiaso, D.4
Keren-Shaul, H.5
David, E.6
Salame, T.M.7
Tanay, A.8
van Oudenaarden, A.9
Amit, I.10
-
53
-
-
85029817347
-
CRISPRcloud: A secure cloud-based pipeline for CRISPR pooled screen deconvolution
-
Published online May 24, 2017
-
Jeong, H.H., Kim, S.Y., Rousseaux, M.W.C., Zoghbi, H.Y., Liu, Z., CRISPRcloud: A secure cloud-based pipeline for CRISPR pooled screen deconvolution. Bioinformatics, 2017, 10.1093/bioinformatics/btx335 Published online May 24, 2017.
-
(2017)
Bioinformatics
-
-
Jeong, H.H.1
Kim, S.Y.2
Rousseaux, M.W.C.3
Zoghbi, H.Y.4
Liu, Z.5
-
54
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A., Charpentier, E., A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337 (2012), 816–821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
55
-
-
85018853205
-
Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening
-
Joung, J., Konermann, S., Gootenberg, J.S., Abudayyeh, O.O., Platt, R.J., Brigham, M.D., Sanjana, N.E., Zhang, F., Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening. Nat. Protoc. 12 (2017), 828–863.
-
(2017)
Nat. Protoc.
, vol.12
, pp. 828-863
-
-
Joung, J.1
Konermann, S.2
Gootenberg, J.S.3
Abudayyeh, O.O.4
Platt, R.J.5
Brigham, M.D.6
Sanjana, N.E.7
Zhang, F.8
-
56
-
-
85027869993
-
Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood
-
Joung, J., Engreitz, J.M., Konermann, S., Abudayyeh, O.O., Verdine, V.K., Aguet, F., Gootenberg, J.S., Sanjana, N.E., Wright, J.B., Fulco, C.P., et al. Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood. Nature 548 (2017), 343–346.
-
(2017)
Nature
, vol.548
, pp. 343-346
-
-
Joung, J.1
Engreitz, J.M.2
Konermann, S.3
Abudayyeh, O.O.4
Verdine, V.K.5
Aguet, F.6
Gootenberg, J.S.7
Sanjana, N.E.8
Wright, J.B.9
Fulco, C.P.10
-
57
-
-
85020857702
-
Harnessing the natural diversity and in vitro evolution of Cas9 to expand the genome editing toolbox
-
Karvelis, T., Gasiunas, G., Siksnys, V., Harnessing the natural diversity and in vitro evolution of Cas9 to expand the genome editing toolbox. Curr. Opin. Microbiol. 37 (2017), 88–94.
-
(2017)
Curr. Opin. Microbiol.
, vol.37
, pp. 88-94
-
-
Karvelis, T.1
Gasiunas, G.2
Siksnys, V.3
-
58
-
-
84928924333
-
Functional annotation of native enhancers with a Cas9-histone demethylase fusion
-
Kearns, N.A., Pham, H., Tabak, B., Genga, R.M., Silverstein, N.J., Garber, M., Maehr, R., Functional annotation of native enhancers with a Cas9-histone demethylase fusion. Nat. Methods 12 (2015), 401–403.
-
(2015)
Nat. Methods
, vol.12
, pp. 401-403
-
-
Kearns, N.A.1
Pham, H.2
Tabak, B.3
Genga, R.M.4
Silverstein, N.J.5
Garber, M.6
Maehr, R.7
-
59
-
-
85018935232
-
Genome-wide target specificities of CRISPR RNA-guided programmable deaminases
-
Kim, D., Lim, K., Kim, S.-T., Yoon, S.H., Kim, K., Ryu, S.-M., Kim, J.-S., Genome-wide target specificities of CRISPR RNA-guided programmable deaminases. Nat. Biotechnol. 35 (2017), 475–480.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 475-480
-
-
Kim, D.1
Lim, K.2
Kim, S.-T.3
Yoon, S.H.4
Kim, K.5
Ryu, S.-M.6
Kim, J.-S.7
-
60
-
-
85013297989
-
In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni
-
Kim, E., Koo, T., Park, S.W., Kim, D., Kim, K., Cho, H.Y., Song, D.W., Lee, K.J., Jung, M.H., Kim, S., et al. In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni. Nat. Commun., 8, 2017, 14500.
-
(2017)
Nat. Commun.
, vol.8
, pp. 14500
-
-
Kim, E.1
Koo, T.2
Park, S.W.3
Kim, D.4
Kim, K.5
Cho, H.Y.6
Song, D.W.7
Lee, K.J.8
Jung, M.H.9
Kim, S.10
-
61
-
-
85017397628
-
Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions
-
Kim, Y.B., Komor, A.C., Levy, J.M., Packer, M.S., Zhao, K.T., Liu, D.R., Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions. Nat. Biotechnol. 35 (2017), 371–376.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 371-376
-
-
Kim, Y.B.1
Komor, A.C.2
Levy, J.M.3
Packer, M.S.4
Zhao, K.T.5
Liu, D.R.6
-
62
-
-
85020467141
-
CRISPR-Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome
-
Klann, T.S., Black, J.B., Chellappan, M., Safi, A., Song, L., Hilton, I.B., Crawford, G.E., Reddy, T.E., Gersbach, C.A., CRISPR-Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome. Nat. Biotechnol. 35 (2017), 561–568.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 561-568
-
-
Klann, T.S.1
Black, J.B.2
Chellappan, M.3
Safi, A.4
Song, L.5
Hilton, I.B.6
Crawford, G.E.7
Reddy, T.E.8
Gersbach, C.A.9
-
63
-
-
84937908208
-
Engineered CRISPR-Cas9 nucleases with altered PAM specificities
-
Kleinstiver, B.P., Prew, M.S., Tsai, S.Q., Topkar, V.V., Nguyen, N.T., Zheng, Z., Gonzales, A.P., Li, Z., Peterson, R.T., Yeh, J.R., et al. Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature 523 (2015), 481–485.
-
(2015)
Nature
, vol.523
, pp. 481-485
-
-
Kleinstiver, B.P.1
Prew, M.S.2
Tsai, S.Q.3
Topkar, V.V.4
Nguyen, N.T.5
Zheng, Z.6
Gonzales, A.P.7
Li, Z.8
Peterson, R.T.9
Yeh, J.R.10
-
64
-
-
84949791988
-
Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition
-
Kleinstiver, B.P., Prew, M.S., Tsai, S.Q., Nguyen, N.T., Topkar, V.V., Zheng, Z., Joung, J.K., Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition. Nat. Biotechnol. 33 (2015), 1293–1298.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1293-1298
-
-
Kleinstiver, B.P.1
Prew, M.S.2
Tsai, S.Q.3
Nguyen, N.T.4
Topkar, V.V.5
Zheng, Z.6
Joung, J.K.7
-
65
-
-
84963941043
-
High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects
-
Kleinstiver, B.P., Pattanayak, V., Prew, M.S., Tsai, S.Q., Nguyen, N.T., Zheng, Z., Joung, J.K., High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature 529 (2016), 490–495.
-
(2016)
Nature
, vol.529
, pp. 490-495
-
-
Kleinstiver, B.P.1
Pattanayak, V.2
Prew, M.S.3
Tsai, S.Q.4
Nguyen, N.T.5
Zheng, Z.6
Joung, J.K.7
-
66
-
-
84898665052
-
Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
-
Koike-Yusa, H., Li, Y., Tan, E.-P., Velasco-Herrera, Mdel.C., Yusa, K., Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library. Nat. Biotechnol. 32 (2014), 267–273.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 267-273
-
-
Koike-Yusa, H.1
Li, Y.2
Tan, E.-P.3
Velasco-Herrera, M.C.4
Yusa, K.5
-
67
-
-
85011982942
-
LncRNA AK023948 is a positive regulator of AKT
-
Koirala, P., Huang, J., Ho, T.-T., Wu, F., Ding, X., Mo, Y.-Y., LncRNA AK023948 is a positive regulator of AKT. Nat. Commun., 8, 2017, 14422.
-
(2017)
Nat. Commun.
, vol.8
, pp. 14422
-
-
Koirala, P.1
Huang, J.2
Ho, T.-T.3
Wu, F.4
Ding, X.5
Mo, Y.-Y.6
-
68
-
-
84971006562
-
Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
-
Komor, A.C., Kim, Y.B., Packer, M.S., Zuris, J.A., Liu, D.R., Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Nature 533 (2016), 420–424.
-
(2016)
Nature
, vol.533
, pp. 420-424
-
-
Komor, A.C.1
Kim, Y.B.2
Packer, M.S.3
Zuris, J.A.4
Liu, D.R.5
-
69
-
-
84882976110
-
Optical control of mammalian endogenous transcription and epigenetic states
-
Konermann, S., Brigham, M.D., Trevino, A., Hsu, P.D., Heidenreich, M., Cong, L., Platt, R.J., Scott, D.A., Church, G.M., Zhang, F., Optical control of mammalian endogenous transcription and epigenetic states. Nature 500 (2013), 472–476.
-
(2013)
Nature
, vol.500
, pp. 472-476
-
-
Konermann, S.1
Brigham, M.D.2
Trevino, A.3
Hsu, P.D.4
Heidenreich, M.5
Cong, L.6
Platt, R.J.7
Scott, D.A.8
Church, G.M.9
Zhang, F.10
-
70
-
-
84923096541
-
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
-
Konermann, S., Brigham, M.D., Trevino, A.E., Joung, J., Abudayyeh, O.O., Barcena, C., Hsu, P.D., Habib, N., Gootenberg, J.S., Nishimasu, H., et al. Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex. Nature 517 (2015), 583–588.
-
(2015)
Nature
, vol.517
, pp. 583-588
-
-
Konermann, S.1
Brigham, M.D.2
Trevino, A.E.3
Joung, J.4
Abudayyeh, O.O.5
Barcena, C.6
Hsu, P.D.7
Habib, N.8
Gootenberg, J.S.9
Nishimasu, H.10
-
71
-
-
85020445396
-
Diversity, classification and evolution of CRISPR-Cas systems
-
Koonin, E.V., Makarova, K.S., Zhang, F., Diversity, classification and evolution of CRISPR-Cas systems. Curr. Opin. Microbiol. 37 (2017), 67–78.
-
(2017)
Curr. Opin. Microbiol.
, vol.37
, pp. 67-78
-
-
Koonin, E.V.1
Makarova, K.S.2
Zhang, F.3
-
72
-
-
84957590341
-
Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9
-
Korkmaz, G., Lopes, R., Ugalde, A.P., Nevedomskaya, E., Han, R., Myacheva, K., Zwart, W., Elkon, R., Agami, R., Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. Nat. Biotechnol. 34 (2016), 192–198.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 192-198
-
-
Korkmaz, G.1
Lopes, R.2
Ugalde, A.P.3
Nevedomskaya, E.4
Han, R.5
Myacheva, K.6
Zwart, W.7
Elkon, R.8
Agami, R.9
-
73
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., Ziller, M.J., et al. Integrative analysis of 111 reference human epigenomes. Nature 518 (2015), 317–330.
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
Meuleman, W.2
Ernst, J.3
Bilenky, M.4
Yen, A.5
Heravi-Moussavi, A.6
Kheradpour, P.7
Zhang, Z.8
Wang, J.9
Ziller, M.J.10
-
74
-
-
85027502168
-
CRISPR-STOP: gene silencing through base-editing-induced nonsense mutations
-
Kuscu, C., Parlak, M., Tufan, T., Yang, J., Szlachta, K., Wei, X., Mammadov, R., Adli, M., CRISPR-STOP: gene silencing through base-editing-induced nonsense mutations. Nat. Methods 14 (2017), 710–712.
-
(2017)
Nat. Methods
, vol.14
, pp. 710-712
-
-
Kuscu, C.1
Parlak, M.2
Tufan, T.3
Yang, J.4
Szlachta, K.5
Wei, X.6
Mammadov, R.7
Adli, M.8
-
75
-
-
85019234035
-
Locus-specific histone deacetylation using a synthetic CRISPR-Cas9-based HDAC
-
Kwon, D.Y., Zhao, Y.-T., Lamonica, J.M., Zhou, Z., Locus-specific histone deacetylation using a synthetic CRISPR-Cas9-based HDAC. Nat. Commun., 8, 2017, 15315.
-
(2017)
Nat. Commun.
, vol.8
, pp. 15315
-
-
Kwon, D.Y.1
Zhao, Y.-T.2
Lamonica, J.M.3
Zhou, Z.4
-
76
-
-
85027075692
-
Targeted DNA methylation in vivo using an engineered dCas9-MQ1 fusion protein
-
Lei, Y., Zhang, X., Su, J., Jeong, M., Gundry, M.C., Huang, Y.-H., Zhou, Y., Li, W., Goodell, M.A., Targeted DNA methylation in vivo using an engineered dCas9-MQ1 fusion protein. Nat. Commun., 8, 2017, 16026.
-
(2017)
Nat. Commun.
, vol.8
, pp. 16026
-
-
Lei, Y.1
Zhang, X.2
Su, J.3
Jeong, M.4
Gundry, M.C.5
Huang, Y.-H.6
Zhou, Y.7
Li, W.8
Goodell, M.A.9
-
77
-
-
84996567029
-
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
-
Li, W., Xu, H., Xiao, T., Cong, L., Love, M.I., Zhang, F., Irizarry, R.A., Liu, J.S., Brown, M., Liu, X.S., MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biol., 15, 2014, 554.
-
(2014)
Genome Biol.
, vol.15
, pp. 554
-
-
Li, W.1
Xu, H.2
Xiao, T.3
Cong, L.4
Love, M.I.5
Zhang, F.6
Irizarry, R.A.7
Liu, J.S.8
Brown, M.9
Liu, X.S.10
-
78
-
-
84955629629
-
Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR
-
Li, W., Köster, J., Xu, H., Chen, C.-H., Xiao, T., Liu, J.S., Brown, M., Liu, X.S., Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR. Genome Biol., 16, 2015, 281.
-
(2015)
Genome Biol.
, vol.16
, pp. 281
-
-
Li, W.1
Köster, J.2
Xu, H.3
Chen, C.-H.4
Xiao, T.5
Liu, J.S.6
Brown, M.7
Liu, X.S.8
-
79
-
-
84984924904
-
Comprehensive analysis of high-throughput screens with HiTSeekR
-
List, M., Schmidt, S., Christiansen, H., Rehmsmeier, M., Tan, Q., Mollenhauer, J., Baumbach, J., Comprehensive analysis of high-throughput screens with HiTSeekR. Nucleic Acids Res. 44 (2016), 6639–6648.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 6639-6648
-
-
List, M.1
Schmidt, S.2
Christiansen, H.3
Rehmsmeier, M.4
Tan, Q.5
Mollenhauer, J.6
Baumbach, J.7
-
80
-
-
84988569121
-
Editing DNA Methylation in the Mammalian Genome
-
Liu, X.S., Wu, H., Ji, X., Stelzer, Y., Wu, X., Czauderna, S., Shu, J., Dadon, D., Young, R.A., Jaenisch, R., Editing DNA Methylation in the Mammalian Genome. Cell 167 (2016), 233–247.e17.
-
(2016)
Cell
, vol.167
, pp. 233-247.e17
-
-
Liu, X.S.1
Wu, H.2
Ji, X.3
Stelzer, Y.4
Wu, X.5
Czauderna, S.6
Shu, J.7
Dadon, D.8
Young, R.A.9
Jaenisch, R.10
-
81
-
-
85008512771
-
C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism
-
Liu, L., Chen, P., Wang, M., Li, X., Wang, J., Yin, M., Wang, Y., C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism. Mol. Cell 65 (2017), 310–322.
-
(2017)
Mol. Cell
, vol.65
, pp. 310-322
-
-
Liu, L.1
Chen, P.2
Wang, M.3
Li, X.4
Wang, J.5
Yin, M.6
Wang, Y.7
-
82
-
-
85008257169
-
CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells
-
Liu, S.J., Horlbeck, M.A., Cho, S.W., Birk, H.S., Malatesta, M., He, D., Attenello, F.J., Villalta, J.E., Cho, M.Y., Chen, Y., et al. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science, 355, 2017, aah7111.
-
(2017)
Science
, vol.355
, pp. aah7111
-
-
Liu, S.J.1
Horlbeck, M.A.2
Cho, S.W.3
Birk, H.S.4
Malatesta, M.5
He, D.6
Attenello, F.J.7
Villalta, J.E.8
Cho, M.Y.9
Chen, Y.10
-
83
-
-
85028389163
-
In Situ Capture of Chromatin Interactions by Biotinylated dCas9
-
Liu, X., Zhang, Y., Chen, Y., Li, M., Zhou, F., Li, K., Cao, H., Ni, M., Liu, Y., Gu, Z., et al. In Situ Capture of Chromatin Interactions by Biotinylated dCas9. Cell 170 (2017), 1028–1043.e19.
-
(2017)
Cell
, vol.170
, pp. 1028-1043.e19
-
-
Liu, X.1
Zhang, Y.2
Chen, Y.3
Li, M.4
Zhou, F.5
Li, K.6
Cao, H.7
Ni, M.8
Liu, Y.9
Gu, Z.10
-
84
-
-
84990898361
-
Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells
-
Ma, Y., Zhang, J., Yin, W., Zhang, Z., Song, Y., Chang, X., Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells. Nat. Methods 13 (2016), 1029–1035.
-
(2016)
Nat. Methods
, vol.13
, pp. 1029-1035
-
-
Ma, Y.1
Zhang, J.2
Yin, W.3
Zhang, Z.4
Song, Y.5
Chang, X.6
-
85
-
-
84929684999
-
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
-
Macosko, E.Z., Basu, A., Satija, R., Nemesh, J., Shekhar, K., Goldman, M., Tirosh, I., Bialas, A.R., Kamitaki, N., Martersteck, E.M., et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161 (2015), 1202–1214.
-
(2015)
Cell
, vol.161
, pp. 1202-1214
-
-
Macosko, E.Z.1
Basu, A.2
Satija, R.3
Nemesh, J.4
Shekhar, K.5
Goldman, M.6
Tirosh, I.7
Bialas, A.R.8
Kamitaki, N.9
Martersteck, E.M.10
-
86
-
-
84884907424
-
CRISPR RNA-guided activation of endogenous human genes
-
Maeder, M.L., Linder, S.J., Cascio, V.M., Fu, Y., Ho, Q.H., Joung, J.K., CRISPR RNA-guided activation of endogenous human genes. Nat. Methods 10 (2013), 977–979.
-
(2013)
Nat. Methods
, vol.10
, pp. 977-979
-
-
Maeder, M.L.1
Linder, S.J.2
Cascio, V.M.3
Fu, Y.4
Ho, Q.H.5
Joung, J.K.6
-
87
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali, P., Yang, L., Esvelt, K.M., Aach, J., Guell, M., DiCarlo, J.E., Norville, J.E., Church, G.M., RNA-guided human genome engineering via Cas9. Science 339 (2013), 823–826.
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
Yang, L.2
Esvelt, K.M.3
Aach, J.4
Guell, M.5
DiCarlo, J.E.6
Norville, J.E.7
Church, G.M.8
-
88
-
-
84884160273
-
CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
-
Mali, P., Aach, J., Stranges, P.B., Esvelt, K.M., Moosburner, M., Kosuri, S., Yang, L., Church, G.M., CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol. 31 (2013), 833–838.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 833-838
-
-
Mali, P.1
Aach, J.2
Stranges, P.B.3
Esvelt, K.M.4
Moosburner, M.5
Kosuri, S.6
Yang, L.7
Church, G.M.8
-
89
-
-
85026403229
-
In vivo CRISPR screening identifies Ptpn2 as a cancer immunotherapy target
-
Manguso, R.T., Pope, H.W., Zimmer, M.D., Brown, F.D., Yates, K.B., Miller, B.C., Collins, N.B., Bi, K., LaFleur, M.W., Juneja, V.R., et al. In vivo CRISPR screening identifies Ptpn2 as a cancer immunotherapy target. Nature 547 (2017), 413–418.
-
(2017)
Nature
, vol.547
, pp. 413-418
-
-
Manguso, R.T.1
Pope, H.W.2
Zimmer, M.D.3
Brown, F.D.4
Yates, K.B.5
Miller, B.C.6
Collins, N.B.7
Bi, K.8
LaFleur, M.W.9
Juneja, V.R.10
-
90
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
Maurano, M.T., Humbert, R., Rynes, E., Thurman, R.E., Haugen, E., Wang, H., Reynolds, A.P., Sandstrom, R., Qu, H., Brody, J., et al. Systematic localization of common disease-associated variation in regulatory DNA. Science 337 (2012), 1190–1195.
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
Humbert, R.2
Rynes, E.3
Thurman, R.E.4
Haugen, E.5
Wang, H.6
Reynolds, A.P.7
Sandstrom, R.8
Qu, H.9
Brody, J.10
-
91
-
-
85028724101
-
GUIDES: sgRNA design for loss-of-function screens
-
Meier, J.A., Zhang, F., Sanjana, N.E., GUIDES: sgRNA design for loss-of-function screens. Nat. Methods 14 (2017), 831–832.
-
(2017)
Nat. Methods
, vol.14
, pp. 831-832
-
-
Meier, J.A.1
Zhang, F.2
Sanjana, N.E.3
-
92
-
-
85030692635
-
Computational correction of copy-number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells
-
Meyers, R.M., Bryan, J.G., Mcfarland, J.M., Weir, B.A., Sizemore, A.E., Xu, H., Dharia, N.V., Montgomery, P.G., Cowley, G.S., Pantel, S., et al. Computational correction of copy-number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells. bioRxiv, 2017, 10.1101/160861.
-
(2017)
bioRxiv
-
-
Meyers, R.M.1
Bryan, J.G.2
Mcfarland, J.M.3
Weir, B.A.4
Sizemore, A.E.5
Xu, H.6
Dharia, N.V.7
Montgomery, P.G.8
Cowley, G.S.9
Pantel, S.10
-
93
-
-
85024103606
-
Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping
-
Morgan, S.L., Mariano, N.C., Bermudez, A., Arruda, N.L., Wu, F., Luo, Y., Shankar, G., Jia, L., Chen, H., Hu, J.-F., et al. Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping. Nat. Commun., 8, 2017, 15993.
-
(2017)
Nat. Commun.
, vol.8
, pp. 15993
-
-
Morgan, S.L.1
Mariano, N.C.2
Bermudez, A.3
Arruda, N.L.4
Wu, F.5
Luo, Y.6
Shankar, G.7
Jia, L.8
Chen, H.9
Hu, J.-F.10
-
94
-
-
85019047785
-
Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens
-
Morgens, D.W., Wainberg, M., Boyle, E.A., Ursu, O., Araya, C.L., Tsui, C.K., Haney, M.S., Hess, G.T., Han, K., Jeng, E.E., et al. Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens. Nat. Commun., 8, 2017, 15178.
-
(2017)
Nat. Commun.
, vol.8
, pp. 15178
-
-
Morgens, D.W.1
Wainberg, M.2
Boyle, E.A.3
Ursu, O.4
Araya, C.L.5
Tsui, C.K.6
Haney, M.S.7
Hess, G.T.8
Han, K.9
Jeng, E.E.10
-
95
-
-
85020713091
-
CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion
-
Mou, H., Smith, J.L., Peng, L., Yin, H., Moore, J., Zhang, X.-O., Song, C.-Q., Sheel, A., Wu, Q., Ozata, D.M., et al. CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion. Genome Biol., 18, 2017, 108.
-
(2017)
Genome Biol.
, vol.18
, pp. 108
-
-
Mou, H.1
Smith, J.L.2
Peng, L.3
Yin, H.4
Moore, J.5
Zhang, X.-O.6
Song, C.-Q.7
Sheel, A.8
Wu, Q.9
Ozata, D.M.10
-
96
-
-
84982913128
-
CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions
-
Munoz, D.M., Cassiani, P.J., Li, L., Billy, E., Korn, J.M., Jones, M.D., Golji, J., Ruddy, D.A., Yu, K., McAllister, G., et al. CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions. Cancer Discov. 6 (2016), 900–913.
-
(2016)
Cancer Discov.
, vol.6
, pp. 900-913
-
-
Munoz, D.M.1
Cassiani, P.J.2
Li, L.3
Billy, E.4
Korn, J.M.5
Jones, M.D.6
Golji, J.7
Ruddy, D.A.8
Yu, K.9
McAllister, G.10
-
97
-
-
85030706426
-
CRISPR/Cas9-APEX-mediated proximity labeling enables discovery of proteins associated with a predefined genomic locus in living cells
-
Myers, S.A., Wright, J., Zhang, F., Carr, S.A., CRISPR/Cas9-APEX-mediated proximity labeling enables discovery of proteins associated with a predefined genomic locus in living cells. BioRxiv, 2017, 10.1101/159517.
-
(2017)
BioRxiv
-
-
Myers, S.A.1
Wright, J.2
Zhang, F.3
Carr, S.A.4
-
98
-
-
84981516964
-
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
-
Nishida, K., Arazoe, T., Yachie, N., Banno, S., Kakimoto, M., Tabata, M., Mochizuki, M., Miyabe, A., Araki, M., Hara, K.Y., et al. Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems. Science 353 (2016), 553–563.
-
(2016)
Science
, vol.353
, pp. 553-563
-
-
Nishida, K.1
Arazoe, T.2
Yachie, N.3
Banno, S.4
Kakimoto, M.5
Tabata, M.6
Mochizuki, M.7
Miyabe, A.8
Araki, M.9
Hara, K.Y.10
-
99
-
-
3643103772
-
An argument for the genetic simplicity of man and other mammals
-
Ohno, S., An argument for the genetic simplicity of man and other mammals. J. Hum. Evol. 1 (1972), 651–662.
-
(1972)
J. Hum. Evol.
, vol.1
, pp. 651-662
-
-
Ohno, S.1
-
100
-
-
84912101598
-
CRISPR-Cas9 knockin mice for genome editing and cancer modeling
-
Platt, R.J., Chen, S., Zhou, Y., Yim, M.J., Swiech, L., Kempton, H.R., Dahlman, J.E., Parnas, O., Eisenhaure, T.M., Jovanovic, M., et al. CRISPR-Cas9 knockin mice for genome editing and cancer modeling. Cell 159 (2014), 440–455.
-
(2014)
Cell
, vol.159
, pp. 440-455
-
-
Platt, R.J.1
Chen, S.2
Zhou, Y.3
Yim, M.J.4
Swiech, L.5
Kempton, H.R.6
Dahlman, J.E.7
Parnas, O.8
Eisenhaure, T.M.9
Jovanovic, M.10
-
101
-
-
85022345215
-
Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells
-
Pott, S., Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells. eLife, 6, 2017, e23203.
-
(2017)
eLife
, vol.6
, pp. e23203
-
-
Pott, S.1
-
102
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi, L.S., Larson, M.H., Gilbert, L.A., Doudna, J.A., Weissman, J.S., Arkin, A.P., Lim, W.A., Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152 (2013), 1173–1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
103
-
-
84992189595
-
Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression
-
Radzisheuskaya, A., Shlyueva, D., Müller, I., Helin, K., Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression. Nucleic Acids Res., 44, 2016, e141.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. e141
-
-
Radzisheuskaya, A.1
Shlyueva, D.2
Müller, I.3
Helin, K.4
-
104
-
-
84957602988
-
High-throughput mapping of regulatory DNA
-
Rajagopal, N., Srinivasan, S., Kooshesh, K., Guo, Y., Edwards, M.D., Banerjee, B., Syed, T., Emons, B.J.M., Gifford, D.K., Sherwood, R.I., High-throughput mapping of regulatory DNA. Nat. Biotechnol. 34 (2016), 167–174.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 167-174
-
-
Rajagopal, N.1
Srinivasan, S.2
Kooshesh, K.3
Guo, Y.4
Edwards, M.D.5
Banerjee, B.6
Syed, T.7
Emons, B.J.M.8
Gifford, D.K.9
Sherwood, R.I.10
-
105
-
-
85011003039
-
Massively multiplex single-cell Hi-C
-
Ramani, V., Deng, X., Qiu, R., Gunderson, K.L., Steemers, F.J., Disteche, C.M., Noble, W.S., Duan, Z., Shendure, J., Massively multiplex single-cell Hi-C. Nat. Methods 14 (2017), 263–266.
-
(2017)
Nat. Methods
, vol.14
, pp. 263-266
-
-
Ramani, V.1
Deng, X.2
Qiu, R.3
Gunderson, K.L.4
Steemers, F.J.5
Disteche, C.M.6
Noble, W.S.7
Duan, Z.8
Shendure, J.9
-
106
-
-
84927514894
-
In vivo genome editing using Staphylococcus aureus Cas9
-
Ran, F.A., Cong, L., Yan, W.X., Scott, D.A., Gootenberg, J.S., Kriz, A.J., Zetsche, B., Shalem, O., Wu, X., Makarova, K.S., et al. In vivo genome editing using Staphylococcus aureus Cas9. Nature 520 (2015), 186–191.
-
(2015)
Nature
, vol.520
, pp. 186-191
-
-
Ran, F.A.1
Cong, L.2
Yan, W.X.3
Scott, D.A.4
Gootenberg, J.S.5
Kriz, A.J.6
Zetsche, B.7
Shalem, O.8
Wu, X.9
Makarova, K.S.10
-
107
-
-
84905455429
-
8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage
-
Rands, C.M., Meader, S., Ponting, C.P., Lunter, G., 8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage. PLoS Genet., 10, 2014, e1004525.
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004525
-
-
Rands, C.M.1
Meader, S.2
Ponting, C.P.3
Lunter, G.4
-
108
-
-
85030722124
-
A map of genetic interactions in cancer cells
-
Rauscher, B., Heigwer, F., Henkel, L., Hielscher, T., Boutros, M., A map of genetic interactions in cancer cells. bioRxiv, 2017, 10.1101/120964.
-
(2017)
bioRxiv
-
-
Rauscher, B.1
Heigwer, F.2
Henkel, L.3
Hielscher, T.4
Boutros, M.5
-
109
-
-
85016113248
-
GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens
-
Rauscher, B., Heigwer, F., Breinig, M., Winter, J., Boutros, M., GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens. Nucleic Acids Res. 45:D1 (2017), D679–D686.
-
(2017)
Nucleic Acids Res.
, vol.45
, Issue.D1
, pp. D679-D686
-
-
Rauscher, B.1
Heigwer, F.2
Breinig, M.3
Winter, J.4
Boutros, M.5
-
110
-
-
85019558765
-
Complementary information derived from CRISPR Cas9 mediated gene deletion and suppression
-
Rosenbluh, J., Xu, H., Harrington, W., Gill, S., Wang, X., Vazquez, F., Root, D.E., Tsherniak, A., Hahn, W.C., Complementary information derived from CRISPR Cas9 mediated gene deletion and suppression. Nat. Commun., 8, 2017, 15403.
-
(2017)
Nat. Commun.
, vol.8
, pp. 15403
-
-
Rosenbluh, J.1
Xu, H.2
Harrington, W.3
Gill, S.4
Wang, X.5
Vazquez, F.6
Root, D.E.7
Tsherniak, A.8
Hahn, W.C.9
-
111
-
-
84946545109
-
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
-
Rotem, A., Ram, O., Shoresh, N., Sperling, R.A., Goren, A., Weitz, D.A., Bernstein, B.E., Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state. Nat. Biotechnol. 33 (2015), 1165–1172.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1165-1172
-
-
Rotem, A.1
Ram, O.2
Shoresh, N.3
Sperling, R.A.4
Goren, A.5
Weitz, D.A.6
Bernstein, B.E.7
-
112
-
-
85006341892
-
Genome-scale CRISPR pooled screens
-
Sanjana, N.E., Genome-scale CRISPR pooled screens. Anal. Biochem. 532 (2017), 95–99.
-
(2017)
Anal. Biochem.
, vol.532
, pp. 95-99
-
-
Sanjana, N.E.1
-
113
-
-
84905262730
-
Improved vectors and genome-wide libraries for CRISPR screening
-
Sanjana, N.E., Shalem, O., Zhang, F., Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11 (2014), 783–784.
-
(2014)
Nat. Methods
, vol.11
, pp. 783-784
-
-
Sanjana, N.E.1
Shalem, O.2
Zhang, F.3
-
114
-
-
84988985113
-
High-resolution interrogation of functional elements in the noncoding genome
-
Sanjana, N.E., Wright, J., Zheng, K., Shalem, O., Fontanillas, P., Joung, J., Cheng, C., Regev, A., Zhang, F., High-resolution interrogation of functional elements in the noncoding genome. Science 353 (2016), 1545–1549.
-
(2016)
Science
, vol.353
, pp. 1545-1549
-
-
Sanjana, N.E.1
Wright, J.2
Zheng, K.3
Shalem, O.4
Fontanillas, P.5
Joung, J.6
Cheng, C.7
Regev, A.8
Zhang, F.9
-
115
-
-
72949103929
-
A census of amplified and overexpressed human cancer genes
-
Santarius, T., Shipley, J., Brewer, D., Stratton, M.R., Cooper, C.S., A census of amplified and overexpressed human cancer genes. Nat. Rev. Cancer 10 (2010), 59–64.
-
(2010)
Nat. Rev. Cancer
, vol.10
, pp. 59-64
-
-
Santarius, T.1
Shipley, J.2
Brewer, D.3
Stratton, M.R.4
Cooper, C.S.5
-
116
-
-
84994335422
-
The epigenetic landscape of T cell exhaustion
-
Sen, D.R., Kaminski, J., Barnitz, R.A., Kurachi, M., Gerdemann, U., Yates, K.B., Tsao, H.-W., Godec, J., LaFleur, M.W., Brown, F.D., et al. The epigenetic landscape of T cell exhaustion. Science 354 (2016), 1165–1169.
-
(2016)
Science
, vol.354
, pp. 1165-1169
-
-
Sen, D.R.1
Kaminski, J.2
Barnitz, R.A.3
Kurachi, M.4
Gerdemann, U.5
Yates, K.B.6
Tsao, H.-W.7
Godec, J.8
LaFleur, M.W.9
Brown, F.D.10
-
117
-
-
84892765883
-
Genome-scale CRISPR-Cas9 knockout screening in human cells
-
Shalem, O., Sanjana, N.E., Hartenian, E., Shi, X., Scott, D.A., Mikkelson, T., Heckl, D., Ebert, B.L., Root, D.E., Doench, J.G., Zhang, F., Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343 (2014), 84–87.
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
Sanjana, N.E.2
Hartenian, E.3
Shi, X.4
Scott, D.A.5
Mikkelson, T.6
Heckl, D.7
Ebert, B.L.8
Root, D.E.9
Doench, J.G.10
Zhang, F.11
-
118
-
-
84928205754
-
High-throughput functional genomics using CRISPR-Cas9
-
Shalem, O., Sanjana, N.E., Zhang, F., High-throughput functional genomics using CRISPR-Cas9. Nat. Rev. Genet. 16 (2015), 299–311.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 299-311
-
-
Shalem, O.1
Sanjana, N.E.2
Zhang, F.3
-
119
-
-
85015668248
-
Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions
-
Shen, J.P., Zhao, D., Sasik, R., Luebeck, J., Birmingham, A., Bojorquez-Gomez, A., Licon, K., Klepper, K., Pekin, D., Beckett, A.N., et al. Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions. Nat. Methods 14 (2017), 573–576.
-
(2017)
Nat. Methods
, vol.14
, pp. 573-576
-
-
Shen, J.P.1
Zhao, D.2
Sasik, R.3
Luebeck, J.4
Birmingham, A.5
Bojorquez-Gomez, A.6
Licon, K.7
Klepper, K.8
Pekin, D.9
Beckett, A.N.10
-
120
-
-
84930939029
-
Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
-
Shi, J., Wang, E., Milazzo, J.P., Wang, Z., Kinney, J.B., Vakoc, C.R., Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains. Nat. Biotechnol. 33 (2015), 661–667.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 661-667
-
-
Shi, J.1
Wang, E.2
Milazzo, J.P.3
Wang, Z.4
Kinney, J.B.5
Vakoc, C.R.6
-
121
-
-
85029038768
-
Discovery of stimulation-responsive immune enhancers with CRISPR activation
-
Simeonov, D.R., Gowen, B.G., Boontanrart, M., Roth, T.L., Gagnon, J.D., Mumbach, M.R., Satpathy, A.T., Lee, Y., Bray, N.L., Chan, A.Y., et al. Discovery of stimulation-responsive immune enhancers with CRISPR activation. Nature 549 (2017), 111–115.
-
(2017)
Nature
, vol.549
, pp. 111-115
-
-
Simeonov, D.R.1
Gowen, B.G.2
Boontanrart, M.3
Roth, T.L.4
Gagnon, J.D.5
Mumbach, M.R.6
Satpathy, A.T.7
Lee, Y.8
Bray, N.L.9
Chan, A.Y.10
-
122
-
-
84952943845
-
Rationally engineered Cas9 nucleases with improved specificity
-
Slaymaker, I.M., Gao, L., Zetsche, B., Scott, D.A., Yan, W.X., Zhang, F., Rationally engineered Cas9 nucleases with improved specificity. Science 351 (2016), 84–88.
-
(2016)
Science
, vol.351
, pp. 84-88
-
-
Slaymaker, I.M.1
Gao, L.2
Zetsche, B.3
Scott, D.A.4
Yan, W.X.5
Zhang, F.6
-
123
-
-
84905405443
-
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
-
Smallwood, S.A., Lee, H.J., Angermueller, C., Krueger, F., Saadeh, H., Peat, J., Andrews, S.R., Stegle, O., Reik, W., Kelsey, G., Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nat. Methods 11 (2014), 817–820.
-
(2014)
Nat. Methods
, vol.11
, pp. 817-820
-
-
Smallwood, S.A.1
Lee, H.J.2
Angermueller, C.3
Krueger, F.4
Saadeh, H.5
Peat, J.6
Andrews, S.R.7
Stegle, O.8
Reik, W.9
Kelsey, G.10
-
124
-
-
85008425651
-
Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28
-
Smargon, A.A., Cox, D.B.T., Pyzocha, N.K., Zheng, K., Slaymaker, I.M., Gootenberg, J.S., Abudayyeh, O.A., Essletzbichler, P., Shmakov, S., Makarova, K.S., et al. Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28. Mol. Cell 65 (2017), 618–630.e7.
-
(2017)
Mol. Cell
, vol.65
, pp. 618-630.e7
-
-
Smargon, A.A.1
Cox, D.B.T.2
Pyzocha, N.K.3
Zheng, K.4
Slaymaker, I.M.5
Gootenberg, J.S.6
Abudayyeh, O.A.7
Essletzbichler, P.8
Shmakov, S.9
Makarova, K.S.10
-
125
-
-
84960094162
-
Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design
-
Smith, J.D., Suresh, S., Schlecht, U., Wu, M., Wagih, O., Peltz, G., Davis, R.W., Steinmetz, L.M., Parts, L., St Onge, R.P., Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design. Genome Biol., 17, 2016, 45.
-
(2016)
Genome Biol.
, vol.17
, pp. 45
-
-
Smith, J.D.1
Suresh, S.2
Schlecht, U.3
Wu, M.4
Wagih, O.5
Peltz, G.6
Davis, R.W.7
Steinmetz, L.M.8
Parts, L.9
St Onge, R.P.10
-
126
-
-
85028316331
-
Simultaneous epitope and transcriptome measurement in single cells
-
Stoeckius, M., Hafemeister, C., Stephenson, W., Houck-Loomis, B., Chattopadhyay, P.K., Swerdlow, H., Satija, R., Smibert, P., Simultaneous epitope and transcriptome measurement in single cells. Nat. Methods 14 (2017), 865–868.
-
(2017)
Nat. Methods
, vol.14
, pp. 865-868
-
-
Stoeckius, M.1
Hafemeister, C.2
Stephenson, W.3
Houck-Loomis, B.4
Chattopadhyay, P.K.5
Swerdlow, H.6
Satija, R.7
Smibert, P.8
-
127
-
-
84908328232
-
A protein-tagging system for signal amplification in gene expression and fluorescence imaging
-
Tanenbaum, M.E., Gilbert, L.A., Qi, L.S., Weissman, J.S., Vale, R.D., A protein-tagging system for signal amplification in gene expression and fluorescence imaging. Cell 159 (2014), 635–646.
-
(2014)
Cell
, vol.159
, pp. 635-646
-
-
Tanenbaum, M.E.1
Gilbert, L.A.2
Qi, L.S.3
Weissman, J.S.4
Vale, R.D.5
-
128
-
-
84961290066
-
Editing the epigenome: technologies for programmable transcription and epigenetic modulation
-
Thakore, P.I., Black, J.B., Hilton, I.B., Gersbach, C.A., Editing the epigenome: technologies for programmable transcription and epigenetic modulation. Nat. Methods 13 (2016), 127–137.
-
(2016)
Nat. Methods
, vol.13
, pp. 127-137
-
-
Thakore, P.I.1
Black, J.B.2
Hilton, I.B.3
Gersbach, C.A.4
-
129
-
-
84992743464
-
Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity
-
Tycko, J., Myer, V.E., Hsu, P.D., Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity. Mol. Cell 63 (2016), 355–370.
-
(2016)
Mol. Cell
, vol.63
, pp. 355-370
-
-
Tycko, J.1
Myer, V.E.2
Hsu, P.D.3
-
130
-
-
84922295278
-
Enhancer evolution across 20 mammalian species
-
Villar, D., Berthelot, C., Aldridge, S., Rayner, T.F., Lukk, M., Pignatelli, M., Park, T.J., Deaville, R., Erichsen, J.T., Jasinska, A.J., et al. Enhancer evolution across 20 mammalian species. Cell 160 (2015), 554–566.
-
(2015)
Cell
, vol.160
, pp. 554-566
-
-
Villar, D.1
Berthelot, C.2
Aldridge, S.3
Rayner, T.F.4
Lukk, M.5
Pignatelli, M.6
Park, T.J.7
Deaville, R.8
Erichsen, J.T.9
Jasinska, A.J.10
-
131
-
-
85010982914
-
Sequencing thousands of single-cell genomes with combinatorial indexing
-
Vitak, S.A., Torkenczy, K.A., Rosenkrantz, J.L., Fields, A.J., Christiansen, L., Wong, M.H., Carbone, L., Steemers, F.J., Adey, A., Sequencing thousands of single-cell genomes with combinatorial indexing. Nat. Methods 14 (2017), 302–308.
-
(2017)
Nat. Methods
, vol.14
, pp. 302-308
-
-
Vitak, S.A.1
Torkenczy, K.A.2
Rosenkrantz, J.L.3
Fields, A.J.4
Christiansen, L.5
Wong, M.H.6
Carbone, L.7
Steemers, F.J.8
Adey, A.9
-
132
-
-
84979034770
-
Repurposing the CRISPR-Cas9 system for targeted DNA methylation
-
Vojta, A., Dobrinić, P., Tadić, V., Bočkor, L., Korać, P., Julg, B., Klasić, M., Zoldoš, V., Repurposing the CRISPR-Cas9 system for targeted DNA methylation. Nucleic Acids Res. 44 (2016), 5615–5628.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 5615-5628
-
-
Vojta, A.1
Dobrinić, P.2
Tadić, V.3
Bočkor, L.4
Korać, P.5
Julg, B.6
Klasić, M.7
Zoldoš, V.8
-
133
-
-
84977617619
-
Genome-Wide CRISPR-Cas9 Screen Identifies MicroRNAs That Regulate Myeloid Leukemia Cell Growth
-
Wallace, J., Hu, R., Mosbruger, T.L., Dahlem, T.J., Stephens, W.Z., Rao, D.S., Round, J.L., O'Connell, R.M., Genome-Wide CRISPR-Cas9 Screen Identifies MicroRNAs That Regulate Myeloid Leukemia Cell Growth. PLoS ONE, 11, 2016, e0153689.
-
(2016)
PLoS ONE
, vol.11
, pp. e0153689
-
-
Wallace, J.1
Hu, R.2
Mosbruger, T.L.3
Dahlem, T.J.4
Stephens, W.Z.5
Rao, D.S.6
Round, J.L.7
O'Connell, R.M.8
-
134
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang, K.C., Chang, H.Y., Molecular mechanisms of long noncoding RNAs. Mol. Cell 43 (2011), 904–914.
-
(2011)
Mol. Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
135
-
-
84892749369
-
Genetic screens in human cells using the CRISPR-Cas9 system
-
Wang, T., Wei, J.J., Sabatini, D.M., Lander, E.S., Genetic screens in human cells using the CRISPR-Cas9 system. Science 343 (2014), 80–84.
-
(2014)
Science
, vol.343
, pp. 80-84
-
-
Wang, T.1
Wei, J.J.2
Sabatini, D.M.3
Lander, E.S.4
-
136
-
-
84959495011
-
Viral packaging and cell culture for CRISPR-based screens
-
Wang, T., Lander, E.S., Sabatini, D.M., Viral packaging and cell culture for CRISPR-based screens. Cold Spring Harb. Protoc., 2016, 2016, t090811.
-
(2016)
Cold Spring Harb. Protoc.
, vol.2016
, pp. t090811
-
-
Wang, T.1
Lander, E.S.2
Sabatini, D.M.3
-
137
-
-
85030681807
-
Pooled AAV-CRISPR screen with targeted amplicon sequencing
-
Wang, G., Chow, R., Ye, L., Guzman, C., Dai, X., Dong, M., Zhang, F., Sharp, P., Platt, R., Chen, S., Pooled AAV-CRISPR screen with targeted amplicon sequencing. bioRxiv, 2017, 10.1101/153643.
-
(2017)
bioRxiv
-
-
Wang, G.1
Chow, R.2
Ye, L.3
Guzman, C.4
Dai, X.5
Dong, M.6
Zhang, F.7
Sharp, P.8
Platt, R.9
Chen, S.10
-
138
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte, W.A., Orlando, D.A., Hnisz, D., Abraham, B.J., Lin, C.Y., Kagey, M.H., Rahl, P.B., Lee, T.I., Young, R.A., Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153 (2013), 307–319.
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
139
-
-
84959908194
-
caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens
-
Winter, J., Breinig, M., Heigwer, F., Brügemann, D., Leible, S., Pelz, O., Zhan, T., Boutros, M., caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens. Bioinformatics 32 (2016), 632–634.
-
(2016)
Bioinformatics
, vol.32
, pp. 632-634
-
-
Winter, J.1
Breinig, M.2
Heigwer, F.3
Brügemann, D.4
Leible, S.5
Pelz, O.6
Zhan, T.7
Boutros, M.8
-
140
-
-
84959418862
-
Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM
-
Wong, A.S.L., Choi, G.C.G., Cui, C.H., Pregernig, G., Milani, P., Adam, M., Perli, S.D., Kazer, S.W., Gaillard, A., Hermann, M., et al. Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM. Proc. Natl. Acad. Sci. USA 113 (2016), 2544–2549.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 2544-2549
-
-
Wong, A.S.L.1
Choi, G.C.G.2
Cui, C.H.3
Pregernig, G.4
Milani, P.5
Adam, M.6
Perli, S.D.7
Kazer, S.W.8
Gaillard, A.9
Hermann, M.10
-
141
-
-
85021658606
-
Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System
-
Xiao, Y., Luo, M., Hayes, R.P., Kim, J., Ng, S., Ding, F., Liao, M., Ke, A., Structure Basis for Directional R-loop Formation and Substrate Handover Mechanisms in Type I CRISPR-Cas System. Cell 170 (2017), 48–60.e11.
-
(2017)
Cell
, vol.170
, pp. 48-60.e11
-
-
Xiao, Y.1
Luo, M.2
Hayes, R.P.3
Kim, J.4
Ng, S.5
Ding, F.6
Liao, M.7
Ke, A.8
-
142
-
-
85017425829
-
Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells
-
Xie, S., Duan, J., Li, B., Zhou, P., Hon, G.C., Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells. Mol. Cell 66 (2017), 285–299.e5.
-
(2017)
Mol. Cell
, vol.66
, pp. 285-299.e5
-
-
Xie, S.1
Duan, J.2
Li, B.3
Zhou, P.4
Hon, G.C.5
-
143
-
-
85010635827
-
piggyBac mediates efficient in vivo CRISPR library screening for tumorigenesis in mice
-
Xu, C., Qi, X., Du, X., Zou, H., Gao, F., Feng, T., Lu, H., Li, S., An, X., Zhang, L., et al. piggyBac mediates efficient in vivo CRISPR library screening for tumorigenesis in mice. Proc. Natl. Acad. Sci. USA 114 (2017), 722–727.
-
(2017)
Proc. Natl. Acad. Sci. USA
, vol.114
, pp. 722-727
-
-
Xu, C.1
Qi, X.2
Du, X.3
Zou, H.4
Gao, F.5
Feng, T.6
Lu, H.7
Li, S.8
An, X.9
Zhang, L.10
-
144
-
-
84908190503
-
CRISPR-mediated direct mutation of cancer genes in the mouse liver
-
Xue, W., Chen, S., Yin, H., Tammela, T., Papagiannakopoulos, T., Joshi, N.S., Cai, W., Yang, G., Bronson, R., Crowley, D.G., et al. CRISPR-mediated direct mutation of cancer genes in the mouse liver. Nature 514 (2014), 380–384.
-
(2014)
Nature
, vol.514
, pp. 380-384
-
-
Xue, W.1
Chen, S.2
Yin, H.3
Tammela, T.4
Papagiannakopoulos, T.5
Joshi, N.S.6
Cai, W.7
Yang, G.8
Bronson, R.9
Crowley, D.G.10
-
145
-
-
84975678715
-
Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system
-
Zetsche, B., Gootenberg, J.S., Abudayyeh, O.O., Slaymaker, I.M., Makarova, K.S., Essletzbichler, P., Volz, S.E., Joung, J., van der Oost, J., Regev, A., et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell 163 (2015), 759–771.
-
(2015)
Cell
, vol.163
, pp. 759-771
-
-
Zetsche, B.1
Gootenberg, J.S.2
Abudayyeh, O.O.3
Slaymaker, I.M.4
Makarova, K.S.5
Essletzbichler, P.6
Volz, S.E.7
Joung, J.8
van der Oost, J.9
Regev, A.10
-
146
-
-
85011072174
-
Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array
-
Zetsche, B., Heidenreich, M., Mohanraju, P., Fedorova, I., Kneppers, J., DeGennaro, E.M., Winblad, N., Choudhury, S.R., Abudayyeh, O.O., Gootenberg, J.S., et al. Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array. Nat. Biotechnol. 35 (2017), 31–34.
-
(2017)
Nat. Biotechnol.
, vol.35
, pp. 31-34
-
-
Zetsche, B.1
Heidenreich, M.2
Mohanraju, P.3
Fedorova, I.4
Kneppers, J.5
DeGennaro, E.M.6
Winblad, N.7
Choudhury, S.R.8
Abudayyeh, O.O.9
Gootenberg, J.S.10
-
147
-
-
85003712738
-
Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library
-
Zhu, S., Li, W., Liu, J., Chen, C.-H., Liao, Q., Xu, P., Xu, H., Xiao, T., Cao, Z., Peng, J., et al. Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library. Nat. Biotechnol. 34 (2016), 1279–1286.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 1279-1286
-
-
Zhu, S.1
Li, W.2
Liu, J.3
Chen, C.-H.4
Liao, Q.5
Xu, P.6
Xu, H.7
Xiao, T.8
Cao, Z.9
Peng, J.10
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