-
1
-
-
85006345820
-
A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response
-
Adamson, B., Norman, T.M., Jost, M., Cho, M.Y., Nuñez, J.K., Chen, Y., Villalta, J.E., Gilbert, L.A., Horlbeck, M.A., Hein, M.Y., et al. A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response. Cell 167 (2016), 1867–1882.e21.
-
(2016)
Cell
, vol.167
, pp. 1867-1882.e21
-
-
Adamson, B.1
Norman, T.M.2
Jost, M.3
Cho, M.Y.4
Nuñez, J.K.5
Chen, Y.6
Villalta, J.E.7
Gilbert, L.A.8
Horlbeck, M.A.9
Hein, M.Y.10
-
2
-
-
84925089678
-
The role of regulatory variation in complex traits and disease
-
Albert, F.W., Kruglyak, L., The role of regulatory variation in complex traits and disease. Nat. Rev. Genet. 16 (2015), 197–212.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 197-212
-
-
Albert, F.W.1
Kruglyak, L.2
-
3
-
-
84874381107
-
Genome-wide quantitative enhancer activity maps identified by STARR-seq
-
Arnold, C.D., Gerlach, D., Stelzer, C., Boryń, Ł.M., Rath, M., Stark, A., Genome-wide quantitative enhancer activity maps identified by STARR-seq. Science 339 (2013), 1074–1077.
-
(2013)
Science
, vol.339
, pp. 1074-1077
-
-
Arnold, C.D.1
Gerlach, D.2
Stelzer, C.3
Boryń, Ł.M.4
Rath, M.5
Stark, A.6
-
4
-
-
84962648703
-
Enhancer regulation of transcriptional bursting parameters revealed by forced chromatin looping
-
Bartman, C.R., Hsu, S.C., Hsiung, C.C.S., Raj, A., Blobel, G.A., Enhancer regulation of transcriptional bursting parameters revealed by forced chromatin looping. Mol. Cell 62 (2016), 237–247.
-
(2016)
Mol. Cell
, vol.62
, pp. 237-247
-
-
Bartman, C.R.1
Hsu, S.C.2
Hsiung, C.C.S.3
Raj, A.4
Blobel, G.A.5
-
5
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
Bonn, S., Zinzen, R.P., Girardot, C., Gustafson, E.H., Perez-Gonzalez, A., Delhomme, N., Ghavi-Helm, Y., Wilczyński, B., Riddell, A., Furlong, E.E.M., Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat. Genet. 44 (2012), 148–156.
-
(2012)
Nat. Genet.
, vol.44
, pp. 148-156
-
-
Bonn, S.1
Zinzen, R.P.2
Girardot, C.3
Gustafson, E.H.4
Perez-Gonzalez, A.5
Delhomme, N.6
Ghavi-Helm, Y.7
Wilczyński, B.8
Riddell, A.9
Furlong, E.E.M.10
-
6
-
-
0029558513
-
Synergistic regulation of human beta-globin gene switching by locus control region elements HS3 and HS4
-
Bungert, J., Davé, U., Lim, K.C., Lieuw, K.H., Shavit, J.A., Liu, Q., Engel, J.D., Synergistic regulation of human beta-globin gene switching by locus control region elements HS3 and HS4. Genes Dev. 9 (1995), 3083–3096.
-
(1995)
Genes Dev.
, vol.9
, pp. 3083-3096
-
-
Bungert, J.1
Davé, U.2
Lim, K.C.3
Lieuw, K.H.4
Shavit, J.A.5
Liu, Q.6
Engel, J.D.7
-
7
-
-
0032912801
-
Hypersensitive site 2 specifies a unique function within the human beta-globin locus control region to stimulate globin gene transcription
-
Bungert, J., Tanimoto, K., Patel, S., Liu, Q., Fear, M., Engel, J.D., Hypersensitive site 2 specifies a unique function within the human beta-globin locus control region to stimulate globin gene transcription. Mol. Cell. Biol. 19 (1999), 3062–3072.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 3062-3072
-
-
Bungert, J.1
Tanimoto, K.2
Patel, S.3
Liu, Q.4
Fear, M.5
Engel, J.D.6
-
8
-
-
84946925193
-
BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis
-
Canver, M.C., Smith, E.C., Sher, F., Pinello, L., Sanjana, N.E., Shalem, O., Chen, D.D., Schupp, P.G., Vinjamur, D.S., Garcia, S.P., et al. BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis. Nature 527 (2015), 192–197.
-
(2015)
Nature
, vol.527
, pp. 192-197
-
-
Canver, M.C.1
Smith, E.C.2
Sher, F.3
Pinello, L.4
Sanjana, N.E.5
Shalem, O.6
Chen, D.D.7
Schupp, P.G.8
Vinjamur, D.S.9
Garcia, S.P.10
-
9
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489 (2012), 57–74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
10
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P., Cheng, A.W., Welstead, G.G., Kooistra, T., Carey, B.W., Steine, E.J., Hanna, J., Lodato, M.A., Frampton, G.M., Sharp, P.A., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107 (2010), 21931–21936.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
11
-
-
85006488344
-
Perturb-seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens
-
Dixit, A., Parnas, O., Li, B., Chen, J., Fulco, C.P., Jerby-Arnon, L., Marjanovic, N.D., Dionne, D., Burks, T., Raychowdhury, R., et al. Perturb-seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens. Cell 167 (2016), 1853–1866.e17.
-
(2016)
Cell
, vol.167
, pp. 1853-1866.e17
-
-
Dixit, A.1
Parnas, O.2
Li, B.3
Chen, J.4
Fulco, C.P.5
Jerby-Arnon, L.6
Marjanovic, N.D.7
Dionne, D.8
Burks, T.9
Raychowdhury, R.10
-
12
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon, J.R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J.S., Ren, B., Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485 (2012), 376–380.
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
13
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., Gingeras, T.R., STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29 (2012), 15–21.
-
(2012)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
14
-
-
33749400168
-
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
-
Dostie, J., Richmond, T.A., Arnaout, R.A., Selzer, R.R., Lee, W.L., Honan, T.A., Rubio, E.D., Krumm, A., Lamb, J., Nusbaum, C., et al. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res. 16 (2006), 1299–1309.
-
(2006)
Genome Res.
, vol.16
, pp. 1299-1309
-
-
Dostie, J.1
Richmond, T.A.2
Arnaout, R.A.3
Selzer, R.R.4
Lee, W.L.5
Honan, T.A.6
Rubio, E.D.7
Krumm, A.8
Lamb, J.9
Nusbaum, C.10
-
15
-
-
84916880365
-
Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes
-
Dowen, J.M., Fan, Z.P., Hnisz, D., Ren, G., Abraham, B.J., Zhang, L.N., Weintraub, A.S., Schuijers, J., Lee, T.I., Zhao, K., Young, R.A., Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes. Cell 159 (2014), 374–387.
-
(2014)
Cell
, vol.159
, pp. 374-387
-
-
Dowen, J.M.1
Fan, Z.P.2
Hnisz, D.3
Ren, G.4
Abraham, B.J.5
Zhang, L.N.6
Weintraub, A.S.7
Schuijers, J.8
Lee, T.I.9
Zhao, K.10
Young, R.A.11
-
16
-
-
34248519466
-
Deletion of the human β-globin LCR 5'HS4 or 5'HS1 differentially affects β-like globin gene expression in β-YAC transgenic mice
-
Fedosyuk, H., Peterson, K.R., Deletion of the human β-globin LCR 5'HS4 or 5'HS1 differentially affects β-like globin gene expression in β-YAC transgenic mice. Blood Cells Mol. Dis. 39 (2007), 44–55.
-
(2007)
Blood Cells Mol. Dis.
, vol.39
, pp. 44-55
-
-
Fedosyuk, H.1
Peterson, K.R.2
-
17
-
-
84990852918
-
Systematic mapping of functional enhancer-promoter connections with CRISPR interference
-
Fulco, C.P., Munschauer, M., Anyoha, R., Munson, G., Grossman, S.R., Perez, E.M., Kane, M., Cleary, B., Lander, E.S., Engreitz, J.M., Systematic mapping of functional enhancer-promoter connections with CRISPR interference. Science 354 (2016), 769–773.
-
(2016)
Science
, vol.354
, pp. 769-773
-
-
Fulco, C.P.1
Munschauer, M.2
Anyoha, R.3
Munson, G.4
Grossman, S.R.5
Perez, E.M.6
Kane, M.7
Cleary, B.8
Lander, E.S.9
Engreitz, J.M.10
-
18
-
-
84988664660
-
The power of multiplexed functional analysis of genetic variants
-
Gasperini, M., Starita, L., Shendure, J., The power of multiplexed functional analysis of genetic variants. Nat. Protoc. 11 (2016), 1782–1787.
-
(2016)
Nat. Protoc.
, vol.11
, pp. 1782-1787
-
-
Gasperini, M.1
Starita, L.2
Shendure, J.3
-
19
-
-
84881171344
-
Enhancer transcripts mark active estrogen receptor binding sites
-
Hah, N., Murakami, S., Nagari, A., Danko, C.G., Kraus, W.L., Enhancer transcripts mark active estrogen receptor binding sites. Genome Res. 23 (2013), 1210–1223.
-
(2013)
Genome Res.
, vol.23
, pp. 1210-1223
-
-
Hah, N.1
Murakami, S.2
Nagari, A.3
Danko, C.G.4
Kraus, W.L.5
-
20
-
-
84976904754
-
Genetic dissection of the α-globin super-enhancer in vivo
-
Hay, D., Hughes, J.R., Babbs, C., Davies, J.O.J., Graham, B.J., Hanssen, L.L.P., Kassouf, M.T., Oudelaar, A.M., Sharpe, J.A., Suciu, M.C., et al. Genetic dissection of the α-globin super-enhancer in vivo. Nat. Genet. 48 (2016), 895–903.
-
(2016)
Nat. Genet.
, vol.48
, pp. 895-903
-
-
Hay, D.1
Hughes, J.R.2
Babbs, C.3
Davies, J.O.J.4
Graham, B.J.5
Hanssen, L.L.P.6
Kassouf, M.T.7
Oudelaar, A.M.8
Sharpe, J.A.9
Suciu, M.C.10
-
21
-
-
84961169621
-
On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-Seq data
-
Hicks, S.C., Teng, M., Irizarry, R.A., On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-Seq data. bioRxiv, 2015, 10.1101/025528.
-
(2015)
bioRxiv
-
-
Hicks, S.C.1
Teng, M.2
Irizarry, R.A.3
-
22
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz, D., Abraham, B.J., Lee, T.I., Lau, A., Saint-André, V., Sigova, A.A., Hoke, H.A., Young, R.A., Super-enhancers in the control of cell identity and disease. Cell 155 (2013), 934–947.
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-André, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
23
-
-
84928207423
-
Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers
-
Hnisz, D., Schuijers, J., Lin, C.Y., Weintraub, A.S., Abraham, B.J., Lee, T.I., Bradner, J.E., Young, R.A., Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers. Mol. Cell 58 (2015), 362–370.
-
(2015)
Mol. Cell
, vol.58
, pp. 362-370
-
-
Hnisz, D.1
Schuijers, J.2
Lin, C.Y.3
Weintraub, A.S.4
Abraham, B.J.5
Lee, T.I.6
Bradner, J.E.7
Young, R.A.8
-
24
-
-
51149097760
-
Shadow enhancers as a source of evolutionary novelty
-
Hong, J.W., Hendrix, D.A., Levine, M.S., Shadow enhancers as a source of evolutionary novelty. Science, 321, 2008, 1314.
-
(2008)
Science
, vol.321
, pp. 1314
-
-
Hong, J.W.1
Hendrix, D.A.2
Levine, M.S.3
-
25
-
-
84926334587
-
A cost-effective RNA sequencing protocol for large-scale gene expression studies
-
Hou, Z., Jiang, P., Swanson, S.A., Elwell, A.L., Nguyen, B.K.S., Bolin, J.M., Stewart, R., Thomson, J.A., A cost-effective RNA sequencing protocol for large-scale gene expression studies. Sci. Rep. 5 (2015), 9570–9575.
-
(2015)
Sci. Rep.
, vol.5
, pp. 9570-9575
-
-
Hou, Z.1
Jiang, P.2
Swanson, S.A.3
Elwell, A.L.4
Nguyen, B.K.S.5
Bolin, J.M.6
Stewart, R.7
Thomson, J.A.8
-
26
-
-
85009062687
-
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity
-
Inoue, F., Kircher, M., Martin, B., Cooper, G.M., Witten, D.M., McManus, M.T., Ahituv, N., Shendure, J., A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity. Genome Res. 27 (2016), 38–52.
-
(2016)
Genome Res.
, vol.27
, pp. 38-52
-
-
Inoue, F.1
Kircher, M.2
Martin, B.3
Cooper, G.M.4
Witten, D.M.5
McManus, M.T.6
Ahituv, N.7
Shendure, J.8
-
27
-
-
85006269827
-
Dissecting immune circuits by linking CRISPR-pooled screens with single-cell RNA-seq
-
Jaitin, D.A., Weiner, A., Yofe, I., Lara-Astiaso, D., Keren-Shaul, H., David, E., Salame, T.M., Tanay, A., van Oudenaarden, A., Amit, I., Dissecting immune circuits by linking CRISPR-pooled screens with single-cell RNA-seq. Cell 167 (2016), 1883–1896.e15.
-
(2016)
Cell
, vol.167
, pp. 1883-1896.e15
-
-
Jaitin, D.A.1
Weiner, A.2
Yofe, I.3
Lara-Astiaso, D.4
Keren-Shaul, H.5
David, E.6
Salame, T.M.7
Tanay, A.8
van Oudenaarden, A.9
Amit, I.10
-
28
-
-
84887620842
-
A high-resolution map of the three-dimensional chromatin interactome in human cells
-
Jin, F., Li, Y., Dixon, J.R., Selvaraj, S., Ye, Z., Lee, A.Y., Yen, C.-A., Schmitt, A.D., Espinoza, C.A., Ren, B., A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature 503 (2013), 290–294.
-
(2013)
Nature
, vol.503
, pp. 290-294
-
-
Jin, F.1
Li, Y.2
Dixon, J.R.3
Selvaraj, S.4
Ye, Z.5
Lee, A.Y.6
Yen, C.-A.7
Schmitt, A.D.8
Espinoza, C.A.9
Ren, B.10
-
29
-
-
79961022267
-
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
-
Koch, F., Fenouil, R., Gut, M., Cauchy, P., Albert, T.K., Zacarias-Cabeza, J., Spicuglia, S., de la Chapelle, A.L., Heidemann, M., Hintermair, C., et al. Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat. Struct. Mol. Biol. 18 (2011), 956–963.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 956-963
-
-
Koch, F.1
Fenouil, R.2
Gut, M.3
Cauchy, P.4
Albert, T.K.5
Zacarias-Cabeza, J.6
Spicuglia, S.7
de la Chapelle, A.L.8
Heidemann, M.9
Hintermair, C.10
-
30
-
-
84923096541
-
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
-
Published online December 10, 2014
-
Konermann, S., Brigham, M.D., Trevino, A.E., Joung, J., Abudayyeh, O.O., Barcena, C., Hsu, P.D., Habib, N., Gootenberg, J.S., Nishimasu, H., et al. Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex. Nature 517 (2015), 583–588 Published online December 10, 2014.
-
(2015)
Nature
, vol.517
, pp. 583-588
-
-
Konermann, S.1
Brigham, M.D.2
Trevino, A.E.3
Joung, J.4
Abudayyeh, O.O.5
Barcena, C.6
Hsu, P.D.7
Habib, N.8
Gootenberg, J.S.9
Nishimasu, H.10
-
31
-
-
84957590341
-
Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9
-
Korkmaz, G., Lopes, R., Ugalde, A.P., Nevedomskaya, E., Han, R., Myacheva, K., Zwart, W., Elkon, R., Agami, R., Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9. Nat. Biotechnol. 34 (2016), 192–198.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 192-198
-
-
Korkmaz, G.1
Lopes, R.2
Ugalde, A.P.3
Nevedomskaya, E.4
Han, R.5
Myacheva, K.6
Zwart, W.7
Elkon, R.8
Agami, R.9
-
32
-
-
84923362619
-
Integrative analysis of 111 reference human epigenomes
-
Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., Ziller, M.J., et al. Integrative analysis of 111 reference human epigenomes. Nature 518 (2015), 317–330.
-
(2015)
Nature
, vol.518
, pp. 317-330
-
-
Kundaje, A.1
Meuleman, W.2
Ernst, J.3
Bilenky, M.4
Yen, A.5
Heravi-Moussavi, A.6
Kheradpour, P.7
Zhang, Z.8
Wang, J.9
Ziller, M.J.10
-
33
-
-
0036227306
-
The human beta-globin locus control region
-
Levings, P.P., Bungert, J., The human beta-globin locus control region. Eur. J. Biochem. 269 (2002), 1589–1599.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 1589-1599
-
-
Levings, P.P.1
Bungert, J.2
-
34
-
-
84897397058
-
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
-
Liao, Y., Smyth, G.K., Shi, W., featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30 (2014), 923–930.
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
35
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M.I., Huber, W., Anders, S., Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 2014, 550.
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
36
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of super-enhancers
-
Lovén, J., Hoke, H.A., Lin, C.Y., Lau, A., Orlando, D.A., Vakoc, C.R., Bradner, J.E., Lee, T.I., Young, R.A., Selective inhibition of tumor oncogenes by disruption of super-enhancers. Cell 153 (2013), 320–334.
-
(2013)
Cell
, vol.153
, pp. 320-334
-
-
Lovén, J.1
Hoke, H.A.2
Lin, C.Y.3
Lau, A.4
Orlando, D.A.5
Vakoc, C.R.6
Bradner, J.E.7
Lee, T.I.8
Young, R.A.9
-
37
-
-
84929684999
-
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
-
Macosko, E.Z., Basu, A., Satija, R., Nemesh, J., Shekhar, K., Goldman, M., Tirosh, I., Bialas, A.R., Kamitaki, N., Martersteck, E.M., et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161 (2015), 1202–1214.
-
(2015)
Cell
, vol.161
, pp. 1202-1214
-
-
Macosko, E.Z.1
Basu, A.2
Satija, R.3
Nemesh, J.4
Shekhar, K.5
Goldman, M.6
Tirosh, I.7
Bialas, A.R.8
Kamitaki, N.9
Martersteck, E.M.10
-
38
-
-
84917710235
-
Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element
-
Mansour, M.R., Abraham, B.J., Anders, L., Berezovskaya, A., Gutierrez, A., Durbin, A.D., Etchin, J., Lawton, L., Sallan, S.E., Silverman, L.B., et al. Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element. Science 346 (2014), 1373–1377.
-
(2014)
Science
, vol.346
, pp. 1373-1377
-
-
Mansour, M.R.1
Abraham, B.J.2
Anders, L.3
Berezovskaya, A.4
Gutierrez, A.5
Durbin, A.D.6
Etchin, J.7
Lawton, L.8
Sallan, S.E.9
Silverman, L.B.10
-
39
-
-
84886084801
-
Locus-specific editing of histone modifications at endogenous enhancers
-
Mendenhall, E.M., Williamson, K.E., Reyon, D., Zou, J.Y., Ram, O., Joung, J.K., Bernstein, B.E., Locus-specific editing of histone modifications at endogenous enhancers. Nat. Biotechnol. 31 (2013), 1133–1136.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1133-1136
-
-
Mendenhall, E.M.1
Williamson, K.E.2
Reyon, D.3
Zou, J.Y.4
Ram, O.5
Joung, J.K.6
Bernstein, B.E.7
-
40
-
-
84913593681
-
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
-
Picelli, S., Björklund, Å.K., Reinius, B., Sagasser, S., Winberg, G., Sandberg, R., Tn5 transposase and tagmentation procedures for massively scaled sequencing projects. Genome Res. 24 (2014), 2033–2040.
-
(2014)
Genome Res.
, vol.24
, pp. 2033-2040
-
-
Picelli, S.1
Björklund, Å.K.2
Reinius, B.3
Sagasser, S.4
Winberg, G.5
Sandberg, R.6
-
41
-
-
84925283769
-
What are super-enhancers?
-
Pott, S., Lieb, J.D., What are super-enhancers?. Nat. Genet. 47 (2015), 8–12.
-
(2015)
Nat. Genet.
, vol.47
, pp. 8-12
-
-
Pott, S.1
Lieb, J.D.2
-
42
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A., Bajpai, R., Swigut, T., Brugmann, S.A., Flynn, R.A., Wysocka, J., A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470 (2011), 279–283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
43
-
-
84957602988
-
High-throughput mapping of regulatory DNA
-
Rajagopal, N., Srinivasan, S., Kooshesh, K., Guo, Y., Edwards, M.D., Banerjee, B., Syed, T., Emons, B.J.M., Gifford, D.K., Sherwood, R.I., High-throughput mapping of regulatory DNA. Nat. Biotechnol. 34 (2016), 167–174.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 167-174
-
-
Rajagopal, N.1
Srinivasan, S.2
Kooshesh, K.3
Guo, Y.4
Edwards, M.D.5
Banerjee, B.6
Syed, T.7
Emons, B.J.M.8
Gifford, D.K.9
Sherwood, R.I.10
-
44
-
-
84988985113
-
High-resolution interrogation of functional elements in the noncoding genome
-
Sanjana, N.E., Wright, J., Zheng, K., Shalem, O., Fontanillas, P., Joung, J., Cheng, C., Regev, A., Zhang, F., High-resolution interrogation of functional elements in the noncoding genome. Science 353 (2016), 1545–1549.
-
(2016)
Science
, vol.353
, pp. 1545-1549
-
-
Sanjana, N.E.1
Wright, J.2
Zheng, K.3
Shalem, O.4
Fontanillas, P.5
Joung, J.6
Cheng, C.7
Regev, A.8
Zhang, F.9
-
45
-
-
84956624079
-
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
-
Savic, D., Roberts, B.S., Carleton, J.B., Partridge, E.C., White, M.A., Cohen, B.A., Cooper, G.M., Gertz, J., Myers, R.M., Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites. Genome Res. 25 (2015), 1791–1800.
-
(2015)
Genome Res.
, vol.25
, pp. 1791-1800
-
-
Savic, D.1
Roberts, B.S.2
Carleton, J.B.3
Partridge, E.C.4
White, M.A.5
Cohen, B.A.6
Cooper, G.M.7
Gertz, J.8
Myers, R.M.9
-
46
-
-
0035949586
-
The murine beta-globin locus control region regulates the rate of transcription but not the hyperacetylation of histones at the active genes
-
Schübeler, D., Groudine, M., Bender, M.A., The murine beta-globin locus control region regulates the rate of transcription but not the hyperacetylation of histones at the active genes. Proc. Natl. Acad. Sci. USA 98 (2001), 11432–11437.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11432-11437
-
-
Schübeler, D.1
Groudine, M.2
Bender, M.A.3
-
47
-
-
84976878643
-
Hierarchy within the mammary STAT5-driven Wap super-enhancer
-
Shin, H.Y., Willi, M., Yoo, K.H., Zeng, X., Wang, C., Metser, G., Hennighausen, L., Hierarchy within the mammary STAT5-driven Wap super-enhancer. Nat. Genet. 48 (2016), 904–911.
-
(2016)
Nat. Genet.
, vol.48
, pp. 904-911
-
-
Shin, H.Y.1
Willi, M.2
Yoo, K.H.3
Zeng, X.4
Wang, C.5
Metser, G.6
Hennighausen, L.7
-
49
-
-
84949100864
-
Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
-
Thakore, P.I., D'Ippolito, A.M., Song, L., Safi, A., Shivakumar, N.K., Kabadi, A.M., Reddy, T.E., Crawford, G.E., Gersbach, C.A., Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements. Nat Methods, 2015, 1143–1149.
-
(2015)
Nat Methods
, pp. 1143-1149
-
-
Thakore, P.I.1
D'Ippolito, A.M.2
Song, L.3
Safi, A.4
Shivakumar, N.K.5
Kabadi, A.M.6
Reddy, T.E.7
Crawford, G.E.8
Gersbach, C.A.9
-
50
-
-
84961290066
-
Editing the epigenome: technologies for programmable transcription and epigenetic modulation
-
Thakore, P.I., Black, J.B., Hilton, I.B., Gersbach, C.A., Editing the epigenome: technologies for programmable transcription and epigenetic modulation. Nat. Methods 13 (2016), 127–137.
-
(2016)
Nat. Methods
, vol.13
, pp. 127-137
-
-
Thakore, P.I.1
Black, J.B.2
Hilton, I.B.3
Gersbach, C.A.4
-
51
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte, W.A., Orlando, D.A., Hnisz, D., Abraham, B.J., Lin, C.Y., Kagey, M.H., Rahl, P.B., Lee, T.I., Young, R.A., Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153 (2013), 307–319.
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
52
-
-
84956634373
-
Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers
-
Zhang, X., Choi, P.S., Francis, J.M., Imielinski, M., Watanabe, H., Cherniack, A.D., Meyerson, M., Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers. Nat. Genet. 48 (2015), 176–182.
-
(2015)
Nat. Genet.
, vol.48
, pp. 176-182
-
-
Zhang, X.1
Choi, P.S.2
Francis, J.M.3
Imielinski, M.4
Watanabe, H.5
Cherniack, A.D.6
Meyerson, M.7
-
53
-
-
84890397089
-
Predicting enhancer transcription and activity from chromatin modifications
-
Zhu, Y., Sun, L., Chen, Z., Whitaker, J.W., Wang, T., Wang, W., Predicting enhancer transcription and activity from chromatin modifications. Nucleic Acids Res. 41 (2013), 10032–10043.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 10032-10043
-
-
Zhu, Y.1
Sun, L.2
Chen, Z.3
Whitaker, J.W.4
Wang, T.5
Wang, W.6
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