-
1
-
-
84902533278
-
Unravelling the structural and mechanistic basis of CRISPR-Cas systems
-
van der Oost, J., Westra, E. R., Jackson, R. N. & Wiedenheft, B. Unravelling the structural and mechanistic basis of CRISPR-Cas systems. Nat. Rev. Microbiol. 12, 479-492 (2014).
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 479-492
-
-
Van Der Oost, J.1
Westra, E.R.2
Jackson, R.N.3
Wiedenheft, B.4
-
2
-
-
84954214717
-
Biology and applications of CRISPR systems: Harnessing nature's toolbox for genome engineering
-
Wright, A. V., Nuñez, J. K. & Doudna, J. A. Biology and applications of CRISPR systems: harnessing nature's toolbox for genome engineering. Cell 164, 29-44 (2016).
-
(2016)
Cell
, vol.164
, pp. 29-44
-
-
Wright, A.V.1
Nuñez, J.K.2
Doudna, J.A.3
-
3
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns, S. J. J. et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321, 960-964 (2008).
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.J.1
-
4
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
Marrafni, L. A. & Sontheimer, E. J. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322, 1843-1845 (2008).
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marrafni, L.A.1
Sontheimer, E.J.2
-
5
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau, J. E. et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468, 67-71 (2010).
-
(2010)
Nature
, vol.468
, pp. 67-71
-
-
Garneau, J.E.1
-
6
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale, C. R. et al. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139, 945-956 (2009).
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
-
7
-
-
84885334898
-
Structure and activity of the RNA-targeting type III-B CRISPR-Cas complex of Thermus thermophilus
-
Staals, R. H. J. et al. Structure and activity of the RNA-targeting type III-B CRISPR-Cas complex of Thermus thermophilus. Mol. Cell 52, 135-145 (2013).
-
(2013)
Mol. Cell
, vol.52
, pp. 135-145
-
-
Staals, R.H.J.1
-
8
-
-
84930085853
-
Co-transcriptional DNA and RNA cleavage during type III CRISPR-Cas immunity
-
Samai, P. et al. Co-transcriptional DNA and RNA cleavage during type III CRISPR-Cas immunity. Cell 161, 1164-1174 (2015).
-
(2015)
Cell
, vol.161
, pp. 1164-1174
-
-
Samai, P.1
-
9
-
-
84974606818
-
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR efector
-
Abudayyeh, O. O. et al. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR efector. Science 353, aaf5573 (2016).
-
(2016)
Science
, vol.353
, pp. aaf5573
-
-
Abudayyeh, O.O.1
-
10
-
-
84947736727
-
Discovery and functional characterization of diverse class 2 CRISPR-Cas systems
-
Shmakov, S. et al. Discovery and functional characterization of diverse class 2 CRISPR-Cas systems. Mol. Cell 60, 385-397 (2015).
-
(2015)
Mol. Cell
, vol.60
, pp. 385-397
-
-
Shmakov, S.1
-
11
-
-
84964862130
-
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
-
Fonfara, I., Richter, H., Bratovic, M., Le Rhun, A. & Charpentier, E. The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA. Nature 532, 517-521 (2016).
-
(2016)
Nature
, vol.532
, pp. 517-521
-
-
Fonfara, I.1
Richter, H.2
Bratovic, M.3
Le Rhun, A.4
Charpentier, E.5
-
12
-
-
84920939515
-
Structural principles of CRISPR RNA processing
-
Li, H. Structural principles of CRISPR RNA processing. Structure 23, 13-20 (2015).
-
(2015)
Structure
, vol.23
, pp. 13-20
-
-
Li, H.1
-
13
-
-
84942746261
-
Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity
-
Charpentier, E., Richter, H., van der Oost, J. & White, M. F. Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity. FEMS Microbiol. Rev. 39, 428-441 (2015).
-
(2015)
FEMS Microbiol. Rev.
, vol.39
, pp. 428-441
-
-
Charpentier, E.1
Richter, H.2
Van Der Oost, J.3
White, M.F.4
-
14
-
-
84924740446
-
Cutting it close: CRISPR-associated endoribonuclease structure and function
-
Hochstrasser, M. L. & Doudna, J. A. Cutting it close: CRISPR-associated endoribonuclease structure and function. Trends Biochem. Sci. 40, 58-66 (2015).
-
(2015)
Trends Biochem. Sci.
, vol.40
, pp. 58-66
-
-
Hochstrasser, M.L.1
Doudna, J.A.2
-
15
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
Carte, J., Wang, R., Li, H., Terns, R. M. & Terns, M. P. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev. 22, 3489-3496 (2008).
-
(2008)
Genes Dev.
, vol.22
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
16
-
-
77956498326
-
Sequence-and structure-specifc RNA processing by a CRISPR endonuclease
-
Haurwitz, R. E., Jinek, M., Wiedenheft, B., Zhou, K. & Doudna, J. A. Sequence-and structure-specifc RNA processing by a CRISPR endonuclease. Science 329, 1355-1358 (2010).
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
17
-
-
84865704094
-
Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system
-
Nam, K. H. et al. Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system. Structure 20, 1574-1584 (2012).
-
(2012)
Structure
, vol.20
, pp. 1574-1584
-
-
Nam, K.H.1
-
18
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva, E. et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471, 602-607 (2011).
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
-
19
-
-
84895832944
-
Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems
-
Fonfara, I. et al. Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems. Nucleic Acids Res. 42, 2577-2590 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 2577-2590
-
-
Fonfara, I.1
-
20
-
-
79951678159
-
Nucleases: Diversity of structure, function and mechanism
-
Yang, W. Nucleases: diversity of structure, function and mechanism. Q. Rev. Biophys. 44, 1-93 (2011).
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 1-93
-
-
Yang, W.1
-
21
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-821 (2012).
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
-
22
-
-
84878893667
-
Comprehensive analysis of the HEPN superfamily: Identifcation of novel roles in intra-genomic conficts, defense, pathogenesis and RNA processing
-
Anantharaman, V., Makarova, K. S., Burroughs, A. M., Koonin, E. V. & Aravind, L. Comprehensive analysis of the HEPN superfamily: identifcation of novel roles in intra-genomic conficts, defense, pathogenesis and RNA processing. Biol. Direct 8, 15 (2013).
-
(2013)
Biol. Direct
, vol.8
, pp. 15
-
-
Anantharaman, V.1
Makarova, K.S.2
Burroughs, A.M.3
Koonin, E.V.4
Aravind, L.5
-
23
-
-
84956762041
-
The CRISPR-associated Csx1 protein of Pyrococcus furiosus is an adenosine-specifc endoribonuclease
-
Sheppard, N. F., Glover, C. V. C., III, Terns, R. M. & Terns, M. P. The CRISPR-associated Csx1 protein of Pyrococcus furiosus is an adenosine-specifc endoribonuclease. RNA 22, 216-224 (2016).
-
(2016)
RNA
, vol.22
, pp. 216-224
-
-
Sheppard, N.F.1
Glover, C.V.C.2
Terns, R.M.3
Terns, M.P.4
-
24
-
-
84958690222
-
Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6
-
Niewoehner, O. & Jinek, M. Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6. RNA 22, 318-329 (2016).
-
(2016)
RNA
, vol.22
, pp. 318-329
-
-
Niewoehner, O.1
Jinek, M.2
-
25
-
-
84864874303
-
Emerging nucleic acid-based tests for point-of-care detection of malaria
-
Cordray, M. S. & Richards-Kortum, R. R. Emerging nucleic acid-based tests for point-of-care detection of malaria. Am. J. Trop. Med. Hyg. 87, 223-230 (2012).
-
(2012)
Am. J. Trop. Med. Hyg.
, vol.87
, pp. 223-230
-
-
Cordray, M.S.1
Richards-Kortum, R.R.2
-
26
-
-
84866692034
-
A lateral fow assay for quantitative detection of amplifed HIV-1 RNA
-
Rohrman, B. A., Leautaud, V., Molyneux, E. & Richards-Kortum, R. R. A lateral fow assay for quantitative detection of amplifed HIV-1 RNA. PLoS One 7, e45611 (2012).
-
(2012)
PLoS One
, vol.7
, pp. e45611
-
-
Rohrman, B.A.1
Leautaud, V.2
Molyneux, E.3
Richards-Kortum, R.R.4
-
27
-
-
84897550274
-
Isothermal amplifed detection of DNA and RNA
-
Yan, L. et al. Isothermal amplifed detection of DNA and RNA. Mol. Biosyst. 10, 970-1003 (2014).
-
(2014)
Mol. Biosyst.
, vol.10
, pp. 970-1003
-
-
Yan, L.1
-
28
-
-
84875985221
-
Caspase functions in cell death and disease
-
McIlwain, D. R., Berger, T. & Mak, T. W. Caspase functions in cell death and disease. Cold Spring Harb. Perspect. Biol. 5, a008656 (2013).
-
(2013)
Cold Spring Harb. Perspect. Biol.
, vol.5
, pp. a008656
-
-
McIlwain, D.R.1
Berger, T.2
Mak, T.W.3
-
29
-
-
84961529059
-
Oligoadenylate synthase-like (OASL) proteins: Dual functions and associations with diseases
-
Choi, U. Y., Kang, J.-S., Hwang, Y. S. & Kim, Y.-J. Oligoadenylate synthase-like (OASL) proteins: dual functions and associations with diseases. Exp. Mol. Med. 47, e144 (2015).
-
(2015)
Exp. Mol. Med.
, vol.47
, pp. e144
-
-
Choi, U.Y.1
Kang, J.-S.2
Hwang, Y.S.3
Kim, Y.-J.4
-
30
-
-
84960540026
-
Multiple nucleic acid cleavage modes in divergent type III CRISPR systems
-
Zhang, J., Graham, S., Tello, A., Liu, H. & White, M. F. Multiple nucleic acid cleavage modes in divergent type III CRISPR systems. Nucleic Acids Res. 44, 1789-1799 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 1789-1799
-
-
Zhang, J.1
Graham, S.2
Tello, A.3
Liu, H.4
White, M.F.5
-
31
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30, 1312-1313 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
32
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772-780 (2013).
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
33
-
-
84858659496
-
Mechanism of substrate selection by a highly specifc CRISPR endoribonuclease
-
Sternberg, S. H., Haurwitz, R. E. & Doudna, J. A. Mechanism of substrate selection by a highly specifc CRISPR endoribonuclease. RNA 18, 661-672 (2012).
-
(2012)
RNA
, vol.18
, pp. 661-672
-
-
Sternberg, S.H.1
Haurwitz, R.E.2
Doudna, J.A.3
-
34
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
|