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Volumn 523, Issue 7561, 2015, Pages 486-490

Single-cell chromatin accessibility reveals principles of regulatory variation

Author keywords

[No Author keywords available]

Indexed keywords

BCR ABL PROTEIN; CIS ACTING ELEMENT; CYCLIN DEPENDENT KINASE 4; CYCLIN DEPENDENT KINASE 6; PROTEIN C JUN; TRANS ACTING FACTOR; TRANSPOSASE; CHROMATIN; DNA; TRANSCRIPTION FACTOR;

EID: 84937857359     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature14590     Document Type: Article
Times cited : (1476)

References (28)
  • 1
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptomewide noise controls lineage choice in mammalian progenitor cells
    • Chang, H. H., Hemberg, M., Barahona, M., Ingber, D. E. & Huang, S. Transcriptomewide noise controls lineage choice in mammalian progenitor cells. Nature 453, 544-547 (2008).
    • (2008) Nature , vol.453 , pp. 544-547
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4    Huang, S.5
  • 2
    • 84889261444 scopus 로고    scopus 로고
    • Oscillatory control of factors determining multipotency and fate in mouse neural progenitors
    • Imayoshi, I. et al. Oscillatory control of factors determining multipotency and fate in mouse neural progenitors. Science 342, 1203-1208 (2013).
    • (2013) Science , vol.342 , pp. 1203-1208
    • Imayoshi, I.1
  • 3
    • 84902668801 scopus 로고    scopus 로고
    • Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
    • Patel, A. P. et al. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. Science 344, 1396-1401 (2014).
    • (2014) Science , vol.344 , pp. 1396-1401
    • Patel, A.P.1
  • 4
    • 79955750055 scopus 로고    scopus 로고
    • Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
    • Bendall, S. C. et al. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 332, 687-696 (2011).
    • (2011) Science , vol.332 , pp. 687-696
    • Bendall, S.C.1
  • 5
    • 77249114260 scopus 로고    scopus 로고
    • Variability in gene expression underlies incomplete penetrance
    • Raj, A., Rifkin, S. A., Andersen, E. & van Oudenaarden, A. Variability in gene expression underlies incomplete penetrance. Nature 463, 913-918 (2010).
    • (2010) Nature , vol.463 , pp. 913-918
    • Raj, A.1    Rifkin, S.A.2    Andersen, E.3    Van Oudenaarden, A.4
  • 6
    • 84893905629 scopus 로고    scopus 로고
    • Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
    • Jaitin, D. A. et al. Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science 343, 776-779 (2014).
    • (2014) Science , vol.343 , pp. 776-779
    • Jaitin, D.A.1
  • 7
    • 84905405443 scopus 로고    scopus 로고
    • Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
    • Smallwood, S. A. et al. Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nature Methods 11, 817-820 (2014).
    • (2014) Nature Methods , vol.11 , pp. 817-820
    • Smallwood, S.A.1
  • 8
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of singlenucleotide and copy-number variations of a single human cell
    • Zong, C., Lu, S., Chapman, A. R. & Xie, X. S. Genome-wide detection of singlenucleotide and copy-number variations of a single human cell. Science 338, 1622-1626 (2012).
    • (2012) Science , vol.338 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4
  • 9
    • 84888877924 scopus 로고    scopus 로고
    • Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
    • Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, H. Y. & Greenleaf, W. J. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nature Methods 10, 1213-1218 (2013).
    • (2013) Nature Methods , vol.10 , pp. 1213-1218
    • Buenrostro, J.D.1    Giresi, P.G.2    Zaba, L.C.3    Chang, H.Y.4    Greenleaf, W.J.5
  • 10
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293 (2009).
    • (2009) Science , vol.326 , pp. 289-293
    • Lieberman-Aiden, E.1
  • 11
    • 21744462100 scopus 로고    scopus 로고
    • Dynamics of chronic myeloid leukaemia
    • Michor, F. et al. Dynamics of chronic myeloid leukaemia. Nature 435, 1267-1270 (2005).
    • (2005) Nature , vol.435 , pp. 1267-1270
    • Michor, F.1
  • 12
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012).
    • (2012) Nature , vol.489 , pp. 57-74
  • 13
    • 84865755978 scopus 로고    scopus 로고
    • The accessible chromatin landscape of the human genome
    • Thurman, R. E. et al. The accessible chromatin landscape of the human genome. Nature 489, 75-82 (2012).
    • (2012) Nature , vol.489 , pp. 75-82
    • Thurman, R.E.1
  • 14
  • 15
    • 78649773164 scopus 로고    scopus 로고
    • Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
    • Adey, A. et al. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol. 11, R119 (2010).
    • (2010) Genome Biol. , vol.11 , pp. R119
    • Adey, A.1
  • 16
    • 79955550445 scopus 로고    scopus 로고
    • User's guide to the Encyclopedia of DNA Elements (ENCODE)
    • ENCODE Project Consortium. User's guide to the Encyclopedia of DNA Elements (ENCODE). PLoS Biol. 9, e1001046 (2011).
    • (2011) PLoS Biol. , vol.9 , pp. e1001046
  • 17
    • 84865739425 scopus 로고    scopus 로고
    • Architecture of the human regulatory network derived from ENCODE data
    • Gerstein, M. B. et al. Architecture of the human regulatory network derived from ENCODE data. Nature 489, 91-100 (2012).
    • (2012) Nature , vol.489 , pp. 91-100
    • Gerstein, M.B.1
  • 18
    • 84886780296 scopus 로고    scopus 로고
    • Dynamic trans-acting factor colocalization in human cells
    • Xie, D. et al. Dynamic trans-acting factor colocalization in human cells. Cell 155, 713-724 (2013).
    • (2013) Cell , vol.155 , pp. 713-724
    • Xie, D.1
  • 19
    • 76349123622 scopus 로고    scopus 로고
    • Sequencing newly replicated DNA revealswidespread plasticity in human replication timing
    • Hansen, R. S. et al. Sequencing newly replicated DNA revealswidespread plasticity in human replication timing. Proc. Natl Acad. Sci. USA 107, 139-144 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 139-144
    • Hansen, R.S.1
  • 20
    • 38849121606 scopus 로고    scopus 로고
    • Cohesins functionally associate with CTCF on mammalian chromosome arms
    • Parelho, V. et al. Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132, 422-433 (2008).
    • (2008) Cell , vol.132 , pp. 422-433
    • Parelho, V.1
  • 21
    • 77954541844 scopus 로고    scopus 로고
    • Single-cell NF-kB dynamics reveal digital activation and analogue information processing
    • Tay, S. et al. Single-cell NF-kB dynamics reveal digital activation and analogue information processing. Nature 466, 267-271 (2010).
    • (2010) Nature , vol.466 , pp. 267-271
    • Tay, S.1
  • 22
    • 84901831004 scopus 로고    scopus 로고
    • Validation of noisemodels for single-cell transcriptomics
    • Grün, D., Kester, L. & van Oudenaarden, A. Validation of noisemodels for single-cell transcriptomics. Nature Methods 11, 637-640 (2014).
    • (2014) Nature Methods , vol.11 , pp. 637-640
    • Grün, D.1    Kester, L.2    Van Oudenaarden, A.3
  • 23
    • 84904460344 scopus 로고    scopus 로고
    • Dynamic heterogeneity and DNA methylation inembryonic stem cells
    • Singer, Z. S. et al. Dynamic heterogeneity and DNA methylation inembryonic stem cells. Mol. Cell 55, 319-331 (2014).
    • (2014) Mol. Cell , vol.55 , pp. 319-331
    • Singer, Z.S.1
  • 24
    • 52949098296 scopus 로고    scopus 로고
    • Frequency-modulated nuclear localization bursts coordinate gene regulation
    • Cai, L., Dalal, C. K. & Elowitz, M. B. Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature 455, 485-490 (2008).
    • (2008) Nature , vol.455 , pp. 485-490
    • Cai, L.1    Dalal, C.K.2    Elowitz, M.B.3
  • 25
    • 84889256682 scopus 로고    scopus 로고
    • Functional roles of pulsing in genetic circuits
    • Levine, J. H., Lin, Y. & Elowitz, M. B. Functional roles of pulsing in genetic circuits. Science 342, 1193-1200 (2013).
    • (2013) Science , vol.342 , pp. 1193-1200
    • Levine, J.H.1    Lin, Y.2    Elowitz, M.B.3
  • 26
    • 79955583542 scopus 로고    scopus 로고
    • Mapping and analysis of chromatin state dynamics in nine human cell types
    • Ernst, J. et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473, 43-49 (2011).
    • (2011) Nature , vol.473 , pp. 43-49
    • Ernst, J.1
  • 27
    • 84862917808 scopus 로고    scopus 로고
    • Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
    • Kalhor, R., Tjong, H., Jayathilaka, N., Alber, F. & Chen, L. Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nature Biotechnol. 30, 90-98 (2012).
    • (2012) Nature Biotechnol. , vol.30 , pp. 90-98
    • Kalhor, R.1    Tjong, H.2    Jayathilaka, N.3    Alber, F.4    Chen, L.5
  • 28
    • 84900297485 scopus 로고    scopus 로고
    • Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
    • Giorgetti, L. et al. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription. Cell 157, 950-963 (2014).
    • (2014) Cell , vol.157 , pp. 950-963
    • Giorgetti, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.