메뉴 건너뛰기




Volumn 14, Issue 3, 2017, Pages 297-301

Pooled CRISPR screening with single-cell transcriptome readout

Author keywords

[No Author keywords available]

Indexed keywords

GUIDE RNA; MESSENGER RNA; PROTEIN KINASE LCK; PROTEIN KINASE ZAP 70; PUROMYCIN; RNA POLYMERASE II; T LYMPHOCYTE RECEPTOR; TRANSCRIPTOME;

EID: 85010898455     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.4177     Document Type: Article
Times cited : (618)

References (25)
  • 1
    • 84947471998 scopus 로고    scopus 로고
    • Gene essentiality and synthetic lethality in haploid human cells
    • Blomen, V.A. et al. Gene essentiality and synthetic lethality in haploid human cells. Science 350, 1092-1096 (2015).
    • (2015) Science , vol.350 , pp. 1092-1096
    • Blomen, V.A.1
  • 2
    • 84947471999 scopus 로고    scopus 로고
    • Identification and characterization of essential genes in the human genome
    • Wang, T. et al. Identification and characterization of essential genes in the human genome. Science 350, 1096-1101 (2015).
    • (2015) Science , vol.350 , pp. 1096-1101
    • Wang, T.1
  • 3
    • 84892765883 scopus 로고    scopus 로고
    • Genome-scale CRISPR-Cas9 knockout screening in human cells
    • Shalem, O. et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343, 84-87 (2014).
    • (2014) Science , vol.343 , pp. 84-87
    • Shalem, O.1
  • 4
    • 84977639708 scopus 로고    scopus 로고
    • Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens
    • Marceau, C.D. et al. Genetic dissection of Flaviviridae host factors through genome-scale CRISPR screens. Nature 535, 159-163 (2016).
    • (2016) Nature , vol.535 , pp. 159-163
    • Marceau, C.D.1
  • 5
    • 33845876254 scopus 로고    scopus 로고
    • The Connectivity Map: A new tool for biomedical research
    • Lamb, J. The Connectivity Map: a new tool for biomedical research. Nat. Rev. Cancer 7, 54-60 (2007).
    • (2007) Nat. Rev. Cancer , vol.7 , pp. 54-60
    • Lamb, J.1
  • 6
    • 84983783244 scopus 로고    scopus 로고
    • Parallel reverse genetic screening in mutant human cells using transcriptomics
    • Gapp, B.V. et al. Parallel reverse genetic screening in mutant human cells using transcriptomics. Mol. Syst. Biol. 12, 879 (2016).
    • (2016) Mol. Syst. Biol. , vol.12 , pp. 879
    • Gapp, B.V.1
  • 7
    • 84929684999 scopus 로고    scopus 로고
    • Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
    • Macosko, E.Z. et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161, 1202-1214 (2015).
    • (2015) Cell , vol.161 , pp. 1202-1214
    • MacOsko, E.Z.1
  • 8
    • 84905262730 scopus 로고    scopus 로고
    • Improved vectors and genome-wide libraries for CRISPR screening
    • Sanjana, N.E., Shalem, O. & Zhang, F. Improved vectors and genome-wide libraries for CRISPR screening. Nat. Methods 11, 783-784 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 783-784
    • Sanjana, N.E.1    Shalem, O.2    Zhang, F.3
  • 9
    • 79954586070 scopus 로고    scopus 로고
    • Design and cloning of an shRNA into a lentiviral silencing vector: Version A
    • pdb.prot5009
    • Tiscornia, G., Singer, O. & Verma, I.M. Design and cloning of an shRNA into a lentiviral silencing vector: version A. CSH Protoc. 1, pdb.prot5009 (2008).
    • (2008) CSH Protoc. , vol.1
    • Tiscornia, G.1    Singer, O.2    Verma, I.M.3
  • 10
    • 84896836282 scopus 로고    scopus 로고
    • Rapid and reliable DNA assembly via ligase cycling reaction
    • de Kok, S. et al. Rapid and reliable DNA assembly via ligase cycling reaction. ACS Synth. Biol. 3, 97-106 (2014).
    • (2014) ACS Synth. Biol. , vol.3 , pp. 97-106
    • De Kok, S.1
  • 11
    • 77957754251 scopus 로고    scopus 로고
    • A rapid and general assay for monitoring endogenous gene modification
    • Guschin, D.Y. et al. A rapid and general assay for monitoring endogenous gene modification. Methods Mol. Biol. 649, 247-256 (2010).
    • (2010) Methods Mol. Biol. , vol.649 , pp. 247-256
    • Guschin, D.Y.1
  • 12
    • 84875419278 scopus 로고    scopus 로고
    • T cell receptor signalling networks: Branched, diversified and bounded
    • Brownlie, R.J. & Zamoyska, R. T cell receptor signalling networks: branched, diversified and bounded. Nat. Rev. Immunol. 13, 257-269 (2013).
    • (2013) Nat. Rev. Immunol. , vol.13 , pp. 257-269
    • Brownlie, R.J.1    Zamoyska, R.2
  • 14
    • 85006345820 scopus 로고    scopus 로고
    • A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response
    • Adamson, B. et al. A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response. Cell 167, 1867-1882.e21 (2016).
    • (2016) Cell , vol.167 , pp. 1867-1867e21
    • Adamson, B.1
  • 15
    • 85006488344 scopus 로고    scopus 로고
    • Perturb-Seq: Dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens
    • Dixit, A. et al. Perturb-Seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens. Cell 167, 1853-1866.e17 (2016).
    • (2016) Cell , vol.167 , pp. 1853-1853e17
    • Dixit, A.1
  • 16
    • 85006269827 scopus 로고    scopus 로고
    • Dissecting immune circuits by linking CRISPR-pooled screens with single-cell RNA-seq
    • Jaitin, D.A. et al. Dissecting immune circuits by linking CRISPR-pooled screens with single-cell RNA-seq. Cell 167, 1883-1896.e15 (2016).
    • (2016) Cell , vol.167 , pp. 1883-1883e15
    • Jaitin, D.A.1
  • 18
    • 84969504939 scopus 로고    scopus 로고
    • Multi-omics of single cells: Strategies and applications
    • Bock, C., Farlik, M. & Sheffield, N.C. Multi-omics of single cells: strategies and applications. Trends Biotechnol. 34, 605-608 (2016).
    • (2016) Trends Biotechnol. , vol.34 , pp. 605-608
    • Bock, C.1    Farlik, M.2    Sheffield, N.C.3
  • 19
    • 84871809302 scopus 로고    scopus 로고
    • STAR: Ultrafast universal RNA-seq aligner
    • Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 15-21
    • Dobin, A.1
  • 20
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger, A.M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 21
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 22
    • 84863992953 scopus 로고    scopus 로고
    • Identifying differentially expressed transcripts from RNA-seq data with biological variation
    • Glaus, P., Honkela, A. & Rattray, M. Identifying differentially expressed transcripts from RNA-seq data with biological variation. Bioinformatics 28, 1721-1728 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1721-1728
    • Glaus, P.1    Honkela, A.2    Rattray, M.3
  • 23
    • 84957432156 scopus 로고    scopus 로고
    • Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types
    • Li, J. et al. Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types. EMBO Rep. 17, 178-187 (2016).
    • (2016) EMBO Rep. , vol.17 , pp. 178-187
    • Li, J.1
  • 24
    • 84975473183 scopus 로고    scopus 로고
    • Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq
    • Treutlein, B. et al. Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq. Nature 534, 391-395 (2016).
    • (2016) Nature , vol.534 , pp. 391-395
    • Treutlein, B.1
  • 25
    • 84987663170 scopus 로고    scopus 로고
    • Enrichr: A comprehensive gene set enrichment analysis web server 2016 update
    • Kuleshov, M.V. et al. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Res. 44, W90-W97 (2016).
    • (2016) Nucleic Acids Res. , vol.44 , pp. W90-W97
    • Kuleshov, M.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.