-
1
-
-
77958136004
-
Genome-wide gain-of-function screen identifies novel regulators of pluripotency
-
R. Abujarour, J. Efe, and S. Ding Genome-wide gain-of-function screen identifies novel regulators of pluripotency Stem Cells 28 2010 1487 1497
-
(2010)
Stem Cells
, vol.28
, pp. 1487-1497
-
-
Abujarour, R.1
Efe, J.2
Ding, S.3
-
2
-
-
77956455037
-
Concerted action of Helios and Ikaros controls the expression of the inositol 5-phosphatase SHIP
-
J. Alinikula, P. Kohonen, K.P. Nera, and O. Lassila Concerted action of Helios and Ikaros controls the expression of the inositol 5-phosphatase SHIP Eur. J. Immunol. 40 2010 2599 2607
-
(2010)
Eur. J. Immunol.
, vol.40
, pp. 2599-2607
-
-
Alinikula, J.1
Kohonen, P.2
Nera, K.P.3
Lassila, O.4
-
3
-
-
80455155050
-
Interactions between subunits of the Mediator complex with gene-specific transcription factors
-
T. Borggrefe, and X. Yue Interactions between subunits of the Mediator complex with gene-specific transcription factors Semin. Cell Dev. Biol. 22 2011 759 768
-
(2011)
Semin. Cell Dev. Biol.
, vol.22
, pp. 759-768
-
-
Borggrefe, T.1
Yue, X.2
-
4
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
L.A. Boyer, T.I. Lee, M.F. Cole, S.E. Johnstone, S.S. Levine, J.P. Zucker, M.G. Guenther, R.M. Kumar, H.L. Murray, and R.G. Jenner Core transcriptional regulatory circuitry in human embryonic stem cells Cell 122 2005 947 956
-
(2005)
Cell
, vol.122
, pp. 947-956
-
-
Boyer, L.A.1
Lee, T.I.2
Cole, M.F.3
Johnstone, S.E.4
Levine, S.S.5
Zucker, J.P.6
Guenther, M.G.7
Kumar, R.M.8
Murray, H.L.9
Jenner, R.G.10
-
5
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
M. Bulger, and M. Groudine Functional and mechanistic diversity of distal transcription enhancers Cell 144 2011 327 339
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
7
-
-
0032498230
-
The enhanceosome and transcriptional synergy
-
M. Carey The enhanceosome and transcriptional synergy Cell 92 1998 5 8
-
(1998)
Cell
, vol.92
, pp. 5-8
-
-
Carey, M.1
-
8
-
-
0025098809
-
A potent GAL4 derivative activates transcription at a distance in vitro
-
M. Carey, J. Leatherwood, and M. Ptashne A potent GAL4 derivative activates transcription at a distance in vitro Science 247 1990 710 712
-
(1990)
Science
, vol.247
, pp. 710-712
-
-
Carey, M.1
Leatherwood, J.2
Ptashne, M.3
-
9
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
X. Chen, H. Xu, P. Yuan, F. Fang, M. Huss, V.B. Vega, E. Wong, Y.L. Orlov, W. Zhang, and J. Jiang Integration of external signaling pathways with the core transcriptional network in embryonic stem cells Cell 133 2008 1106 1117
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
-
10
-
-
79953162883
-
Function and regulation of the Mediator complex
-
R.C. Conaway, and J.W. Conaway Function and regulation of the Mediator complex Curr. Opin. Genet. Dev. 21 2011 225 230
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 225-230
-
-
Conaway, R.C.1
Conaway, J.W.2
-
11
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
M.P. Creyghton, A.W. Cheng, G.G. Welstead, T. Kooistra, B.W. Carey, E.J. Steine, J. Hanna, M.A. Lodato, G.M. Frampton, and P.A. Sharp Histone H3K27ac separates active from poised enhancers and predicts developmental state Proc. Natl. Acad. Sci. USA 107 2010 21931 21936
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
12
-
-
0034717335
-
Regulation of B lymphocyte and macrophage development by graded expression of PU.1
-
R.P. DeKoter, and H. Singh Regulation of B lymphocyte and macrophage development by graded expression of PU.1 Science 288 2000 1439 1441
-
(2000)
Science
, vol.288
, pp. 1439-1441
-
-
Dekoter, R.P.1
Singh, H.2
-
13
-
-
0028446580
-
A locus control region in the T cell receptor alpha/delta locus
-
P. Diaz, D. Cado, and A. Winoto A locus control region in the T cell receptor alpha/delta locus Immunity 1 1994 207 217
-
(1994)
Immunity
, vol.1
, pp. 207-217
-
-
Diaz, P.1
Cado, D.2
Winoto, A.3
-
14
-
-
65349123354
-
A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity
-
L. Ding, M. Paszkowski-Rogacz, A. Nitzsche, M.M. Slabicki, A.K. Heninger, I. de Vries, R. Kittler, M. Junqueira, A. Shevchenko, and H. Schulz A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity Cell Stem Cell 4 2009 403 415
-
(2009)
Cell Stem Cell
, vol.4
, pp. 403-415
-
-
Ding, L.1
Paszkowski-Rogacz, M.2
Nitzsche, A.3
Slabicki, M.M.4
Heninger, A.K.5
De Vries, I.6
Kittler, R.7
Junqueira, M.8
Shevchenko, A.9
Schulz, H.10
-
15
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
J.R. Dixon, S. Selvaraj, F. Yue, A. Kim, Y. Li, Y. Shen, M. Hu, J.S. Liu, and B. Ren Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 2012 376 380
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
Hu, M.7
Liu, J.S.8
Ren, B.9
-
16
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
I. Dunham, A. Kundaje, S.F. Aldred, P.J. Collins, C.A. Davis, F. Doyle, C.B. Epstein, S. Frietze, J. Harrow, R. Kaul ENCODE Project Consortium An integrated encyclopedia of DNA elements in the human genome Nature 489 2012 57 74
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Dunham, I.1
Kundaje, A.2
Aldred, S.F.3
Collins, P.J.4
Davis, C.A.5
Doyle, F.6
Epstein, C.B.7
Frietze, S.8
Harrow, J.9
Kaul, R.10
-
17
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
J. Ernst, and M. Kellis Discovery and characterization of chromatin states for systematic annotation of the human genome Nat. Biotechnol. 28 2010 817 825
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
18
-
-
46149110511
-
An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity
-
T.G. Fazzio, J.T. Huff, and B. Panning An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity Cell 134 2008 162 174
-
(2008)
Cell
, vol.134
, pp. 162-174
-
-
Fazzio, T.G.1
Huff, J.T.2
Panning, B.3
-
19
-
-
59649105969
-
Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb
-
B. Feng, J. Jiang, P. Kraus, J.H. Ng, J.C. Heng, Y.S. Chan, L.P. Yaw, W. Zhang, Y.H. Loh, and J. Han Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb Nat. Cell Biol. 11 2009 197 203
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 197-203
-
-
Feng, B.1
Jiang, J.2
Kraus, P.3
Ng, J.H.4
Heng, J.C.5
Chan, Y.S.6
Yaw, L.P.7
Zhang, W.8
Loh, Y.H.9
Han, J.10
-
20
-
-
84867381511
-
Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells
-
N. Festuccia, R. Osorno, F. Halbritter, V. Karwacki-Neisius, P. Navarro, D. Colby, F. Wong, A. Yates, S.R. Tomlinson, and I. Chambers Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells Cell Stem Cell 11 2012 477 490
-
(2012)
Cell Stem Cell
, vol.11
, pp. 477-490
-
-
Festuccia, N.1
Osorno, R.2
Halbritter, F.3
Karwacki-Neisius, V.4
Navarro, P.5
Colby, D.6
Wong, F.7
Yates, A.8
Tomlinson, S.R.9
Chambers, I.10
-
21
-
-
77957776228
-
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
-
G.J. Filion, J.G. van Bemmel, U. Braunschweig, W. Talhout, J. Kind, L.D. Ward, W. Brugman, I.J. de Castro, R.M. Kerkhoven, H.J. Bussemaker, and B. van Steensel Systematic protein location mapping reveals five principal chromatin types in Drosophila cells Cell 143 2010 212 224
-
(2010)
Cell
, vol.143
, pp. 212-224
-
-
Filion, G.J.1
Van Bemmel, J.G.2
Braunschweig, U.3
Talhout, W.4
Kind, J.5
Ward, L.D.6
Brugman, W.7
De Castro, I.J.8
Kerkhoven, R.M.9
Bussemaker, H.J.10
Van Steensel, B.11
-
22
-
-
0025107556
-
A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus
-
W.C. Forrester, E. Epner, M.C. Driscoll, T. Enver, M. Brice, T. Papayannopoulou, and M. Groudine A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus Genes Dev. 4 1990 1637 1649
-
(1990)
Genes Dev.
, vol.4
, pp. 1637-1649
-
-
Forrester, W.C.1
Epner, E.2
Driscoll, M.C.3
Enver, T.4
Brice, M.5
Papayannopoulou, T.6
Groudine, M.7
-
23
-
-
0028986250
-
Assembly and function of a TCR alpha enhancer complex is dependent on LEF-1-induced DNA bending and multiple protein-protein interactions
-
K. Giese, C. Kingsley, J.R. Kirshner, and R. Grosschedl Assembly and function of a TCR alpha enhancer complex is dependent on LEF-1-induced DNA bending and multiple protein-protein interactions Genes Dev. 9 1995 995 1008
-
(1995)
Genes Dev.
, vol.9
, pp. 995-1008
-
-
Giese, K.1
Kingsley, C.2
Kirshner, J.R.3
Grosschedl, R.4
-
24
-
-
0023803638
-
Cooperative DNA binding of the yeast transcriptional activator GAL4
-
E. Giniger, and M. Ptashne Cooperative DNA binding of the yeast transcriptional activator GAL4 Proc. Natl. Acad. Sci. USA 85 1988 382 386
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 382-386
-
-
Giniger, E.1
Ptashne, M.2
-
25
-
-
0025996980
-
Regulated expression of the GAL4 activator gene in yeast provides a sensitive genetic switch for glucose repression
-
D.W. Griggs, and M. Johnston Regulated expression of the GAL4 activator gene in yeast provides a sensitive genetic switch for glucose repression Proc. Natl. Acad. Sci. USA 88 1991 8597 8601
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 8597-8601
-
-
Griggs, D.W.1
Johnston, M.2
-
26
-
-
0023663887
-
Position-independent, high-level expression of the human beta-globin gene in transgenic mice
-
F. Grosveld, G.B. van Assendelft, D.R. Greaves, and G. Kollias Position-independent, high-level expression of the human beta-globin gene in transgenic mice Cell 51 1987 975 985
-
(1987)
Cell
, vol.51
, pp. 975-985
-
-
Grosveld, F.1
Van Assendelft, G.B.2
Greaves, D.R.3
Kollias, G.4
-
27
-
-
84866518216
-
An anatomically comprehensive atlas of the adult human brain transcriptome
-
M.J. Hawrylycz, E.S. Lein, A.L. Guillozet-Bongaarts, E.H. Shen, L. Ng, J.A. Miller, L.N. van de Lagemaat, K.A. Smith, A. Ebbert, and Z.L. Riley An anatomically comprehensive atlas of the adult human brain transcriptome Nature 489 2012 391 399
-
(2012)
Nature
, vol.489
, pp. 391-399
-
-
Hawrylycz, M.J.1
Lein, E.S.2
Guillozet-Bongaarts, A.L.3
Shen, E.H.4
Ng, L.5
Miller, J.A.6
Van De Lagemaat, L.N.7
Smith, K.A.8
Ebbert, A.9
Riley, Z.L.10
-
28
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
N.D. Heintzman, G.C. Hon, R.D. Hawkins, P. Kheradpour, A. Stark, L.F. Harp, Z. Ye, L.K. Lee, R.K. Stuart, and C.W. Ching Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature 459 2009 108 112
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
29
-
-
55549118625
-
ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome
-
G. Hon, B. Ren, and W. Wang ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome PLoS Comput. Biol. 4 2008 e1000201
-
(2008)
PLoS Comput. Biol.
, vol.4
, pp. 1000201
-
-
Hon, G.1
Ren, B.2
Wang, W.3
-
30
-
-
64349096829
-
A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal
-
G. Hu, J. Kim, Q. Xu, Y. Leng, S.H. Orkin, and S.J. Elledge A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal Genes Dev. 23 2009 837 848
-
(2009)
Genes Dev.
, vol.23
, pp. 837-848
-
-
Hu, G.1
Kim, J.2
Xu, Q.3
Leng, Y.4
Orkin, S.H.5
Elledge, S.J.6
-
31
-
-
0033635048
-
Involvement of the TRAP220 component of the TRAP/SMCC coactivator complex in embryonic development and thyroid hormone action
-
M. Ito, C.X. Yuan, H.J. Okano, R.B. Darnell, and R.G. Roeder Involvement of the TRAP220 component of the TRAP/SMCC coactivator complex in embryonic development and thyroid hormone action Mol. Cell 5 2000 683 693
-
(2000)
Mol. Cell
, vol.5
, pp. 683-693
-
-
Ito, M.1
Yuan, C.X.2
Okano, H.J.3
Darnell, R.B.4
Roeder, R.G.5
-
32
-
-
40249093059
-
A core Klf circuitry regulates self-renewal of embryonic stem cells
-
J. Jiang, Y.S. Chan, Y.H. Loh, J. Cai, G.Q. Tong, C.A. Lim, P. Robson, S. Zhong, and H.H. Ng A core Klf circuitry regulates self-renewal of embryonic stem cells Nat. Cell Biol. 10 2008 353 360
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 353-360
-
-
Jiang, J.1
Chan, Y.S.2
Loh, Y.H.3
Cai, J.4
Tong, G.Q.5
Lim, C.A.6
Robson, P.7
Zhong, S.8
Ng, H.H.9
-
33
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
M.H. Kagey, J.J. Newman, S. Bilodeau, Y. Zhan, D.A. Orlando, N.L. van Berkum, C.C. Ebmeier, J. Goossens, P.B. Rahl, and S.S. Levine Mediator and cohesin connect gene expression and chromatin architecture Nature 467 2010 430 435
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
Van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
34
-
-
0031310825
-
The mechanism of transcriptional synergy of an in vitro assembled interferon-beta enhanceosome
-
T.K. Kim, and T. Maniatis The mechanism of transcriptional synergy of an in vitro assembled interferon-beta enhanceosome Mol. Cell 1 1997 119 129
-
(1997)
Mol. Cell
, vol.1
, pp. 119-129
-
-
Kim, T.K.1
Maniatis, T.2
-
35
-
-
40749104852
-
An extended transcriptional network for pluripotency of embryonic stem cells
-
J. Kim, J. Chu, X. Shen, J. Wang, and S.H. Orkin An extended transcriptional network for pluripotency of embryonic stem cells Cell 132 2008 1049 1061
-
(2008)
Cell
, vol.132
, pp. 1049-1061
-
-
Kim, J.1
Chu, J.2
Shen, X.3
Wang, J.4
Orkin, S.H.5
-
36
-
-
18844451820
-
Mediator and the mechanism of transcriptional activation
-
R.D. Kornberg Mediator and the mechanism of transcriptional activation Trends Biochem. Sci. 30 2005 235 239
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 235-239
-
-
Kornberg, R.D.1
-
37
-
-
44649186791
-
Instructive role of the transcription factor E2A in early B lymphopoiesis and germinal center B cell development
-
K. Kwon, C. Hutter, Q. Sun, I. Bilic, C. Cobaleda, S. Malin, and M. Busslinger Instructive role of the transcription factor E2A in early B lymphopoiesis and germinal center B cell development Immunity 28 2008 751 762
-
(2008)
Immunity
, vol.28
, pp. 751-762
-
-
Kwon, K.1
Hutter, C.2
Sun, Q.3
Bilic, I.4
Cobaleda, C.5
Malin, S.6
Busslinger, M.7
-
38
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
B. Langmead, C. Trapnell, M. Pop, and S.L. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol. 10 2009 R25
-
(2009)
Genome Biol.
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
39
-
-
84870222914
-
Disentangling the many layers of eukaryotic transcriptional regulation
-
K.M. Lelli, M. Slattery, and R.S. Mann Disentangling the many layers of eukaryotic transcriptional regulation Annu. Rev. Genet. 46 2012 43 68
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 43-68
-
-
Lelli, K.M.1
Slattery, M.2
Mann, R.S.3
-
40
-
-
0037819447
-
Transcription regulation and animal diversity
-
M. Levine, and R. Tjian Transcription regulation and animal diversity Nature 424 2003 147 151
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
41
-
-
77953763449
-
A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
-
Y.C. Lin, S. Jhunjhunwala, C. Benner, S. Heinz, E. Welinder, R. Mansson, M. Sigvardsson, J. Hagman, C.A. Espinoza, and J. Dutkowski A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate Nat. Immunol. 11 2010 635 643
-
(2010)
Nat. Immunol.
, vol.11
, pp. 635-643
-
-
Lin, Y.C.1
Jhunjhunwala, S.2
Benner, C.3
Heinz, S.4
Welinder, E.5
Mansson, R.6
Sigvardsson, M.7
Hagman, J.8
Espinoza, C.A.9
Dutkowski, J.10
-
42
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
Y.H. Loh, Q. Wu, J.L. Chew, V.B. Vega, W. Zhang, X. Chen, G. Bourque, J. George, B. Leong, and J. Liu The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells Nat. Genet. 38 2006 431 440
-
(2006)
Nat. Genet.
, vol.38
, pp. 431-440
-
-
Loh, Y.H.1
Wu, Q.2
Chew, J.L.3
Vega, V.B.4
Zhang, W.5
Chen, X.6
Bourque, G.7
George, J.8
Leong, B.9
Liu, J.10
-
43
-
-
84876222028
-
Selective inhibition of tumor oncogenes by disruption of super-enhancers
-
this issue
-
J. Lovén, H.A. Hoke, C.Y. Lin, A. Lau, D.A. Orlando, C.R. Vakoc, J.E. Bradner, T.I. Lee, and R.A. Young Selective inhibition of tumor oncogenes by disruption of super-enhancers Cell 153 2013 320 334 this issue
-
(2013)
Cell
, vol.153
, pp. 320-334
-
-
Lovén, J.1
Hoke, H.A.2
Lin, C.Y.3
Lau, A.4
Orlando, D.A.5
Vakoc, C.R.6
Bradner, J.E.7
Lee, T.I.8
Young, R.A.9
-
44
-
-
0027969316
-
Identification of a locus control region in the immunoglobulin heavy-chain locus that deregulates c-myc expression in plasmacytoma and Burkitt's lymphoma cells
-
L. Madisen, and M. Groudine Identification of a locus control region in the immunoglobulin heavy-chain locus that deregulates c-myc expression in plasmacytoma and Burkitt's lymphoma cells Genes Dev. 8 1994 2212 2226
-
(1994)
Genes Dev.
, vol.8
, pp. 2212-2226
-
-
Madisen, L.1
Groudine, M.2
-
45
-
-
77958111633
-
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
-
S. Malik, and R.G. Roeder The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation Nat. Rev. Genet. 11 2010 761 772
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 761-772
-
-
Malik, S.1
Roeder, R.G.2
-
46
-
-
84871390259
-
Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate
-
R. Mansson, E. Welinder, J. Åhsberg, Y.C. Lin, C. Benner, C.K. Glass, J.S. Lucas, M. Sigvardsson, and C. Murre Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate Proc. Natl. Acad. Sci. USA 109 2012 21028 21033
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 21028-21033
-
-
Mansson, R.1
Welinder, E.2
Åhsberg, J.3
Lin, Y.C.4
Benner, C.5
Glass, C.K.6
Lucas, J.S.7
Sigvardsson, M.8
Murre, C.9
-
47
-
-
84867387161
-
Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal
-
G. Martello, T. Sugimoto, E. Diamanti, A. Joshi, R. Hannah, S. Ohtsuka, B. Göttgens, H. Niwa, and A. Smith Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal Cell Stem Cell 11 2012 491 504
-
(2012)
Cell Stem Cell
, vol.11
, pp. 491-504
-
-
Martello, G.1
Sugimoto, T.2
Diamanti, E.3
Joshi, A.4
Hannah, R.5
Ohtsuka, S.6
Göttgens, B.7
Niwa, H.8
Smith, A.9
-
49
-
-
80052181929
-
Mir-290-295 deficiency in mice results in partially penetrant embryonic lethality and germ cell defects
-
L.A. Medeiros, L.M. Dennis, M.E. Gill, H. Houbaviy, S. Markoulaki, D. Fu, A.C. White, O. Kirak, P.A. Sharp, D.C. Page, and R. Jaenisch Mir-290-295 deficiency in mice results in partially penetrant embryonic lethality and germ cell defects Proc. Natl. Acad. Sci. USA 108 2011 14163 14168
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 14163-14168
-
-
Medeiros, L.A.1
Dennis, L.M.2
Gill, M.E.3
Houbaviy, H.4
Markoulaki, S.5
Fu, D.6
White, A.C.7
Kirak, O.8
Sharp, P.A.9
Page, D.C.10
Jaenisch, R.11
-
50
-
-
0028988293
-
Identification of 3′ alpha-hs4, a novel Ig heavy chain enhancer element regulated at multiple stages of B cell differentiation
-
J.S. Michaelson, S.L. Giannini, and B.K. Birshtein Identification of 3′ alpha-hs4, a novel Ig heavy chain enhancer element regulated at multiple stages of B cell differentiation Nucleic Acids Res. 23 1995 975 981
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 975-981
-
-
Michaelson, J.S.1
Giannini, S.L.2
Birshtein, B.K.3
-
51
-
-
79955615662
-
The transcriptional and signalling networks of pluripotency
-
H.H. Ng, and M.A. Surani The transcriptional and signalling networks of pluripotency Nat. Cell Biol. 13 2011 490 496
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 490-496
-
-
Ng, H.H.1
Surani, M.A.2
-
52
-
-
28344436489
-
Interaction between Oct3/4 and Cdx2 determines trophectoderm differentiation
-
H. Niwa, Y. Toyooka, D. Shimosato, D. Strumpf, K. Takahashi, R. Yagi, and J. Rossant Interaction between Oct3/4 and Cdx2 determines trophectoderm differentiation Cell 123 2005 917 929
-
(2005)
Cell
, vol.123
, pp. 917-929
-
-
Niwa, H.1
Toyooka, Y.2
Shimosato, D.3
Strumpf, D.4
Takahashi, K.5
Yagi, R.6
Rossant, J.7
-
53
-
-
34250212629
-
The transcriptional regulation of B cell lineage commitment
-
S.L. Nutt, and B.L. Kee The transcriptional regulation of B cell lineage commitment Immunity 26 2007 715 725
-
(2007)
Immunity
, vol.26
, pp. 715-725
-
-
Nutt, S.L.1
Kee, B.L.2
-
54
-
-
79952901680
-
Enhancer function: New insights into the regulation of tissue-specific gene expression
-
C.T. Ong, and V.G. Corces Enhancer function: new insights into the regulation of tissue-specific gene expression Nat. Rev. Genet. 12 2011 283 293
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 283-293
-
-
Ong, C.T.1
Corces, V.G.2
-
55
-
-
0025201279
-
Globin gene regulation and switching: Circa 1990
-
S.H. Orkin Globin gene regulation and switching: circa 1990 Cell 63 1990 665 672
-
(1990)
Cell
, vol.63
, pp. 665-672
-
-
Orkin, S.H.1
-
56
-
-
79958252915
-
Chromatin connections to pluripotency and cellular reprogramming
-
S.H. Orkin, and K. Hochedlinger Chromatin connections to pluripotency and cellular reprogramming Cell 145 2011 835 850
-
(2011)
Cell
, vol.145
, pp. 835-850
-
-
Orkin, S.H.1
Hochedlinger, K.2
-
58
-
-
84867728827
-
Ncoa3 functions as an essential Esrrb coactivator to sustain embryonic stem cell self-renewal and reprogramming
-
M. Percharde, F. Lavial, J.H. Ng, V. Kumar, R.A. Tomaz, N. Martin, J.C. Yeo, J. Gil, S. Prabhakar, and H.H. Ng Ncoa3 functions as an essential Esrrb coactivator to sustain embryonic stem cell self-renewal and reprogramming Genes Dev. 26 2012 2286 2298
-
(2012)
Genes Dev.
, vol.26
, pp. 2286-2298
-
-
Percharde, M.1
Lavial, F.2
Ng, J.H.3
Kumar, V.4
Tomaz, R.A.5
Martin, N.6
Yeo, J.C.7
Gil, J.8
Prabhakar, S.9
Ng, H.H.10
-
59
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
A. Rada-Iglesias, R. Bajpai, T. Swigut, S.A. Brugmann, R.A. Flynn, and J. Wysocka A unique chromatin signature uncovers early developmental enhancers in humans Nature 470 2011 279 283
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
60
-
-
77953020027
-
The Mediator complex protein Med31 is required for embryonic growth and cell proliferation during mammalian development
-
M.D. Risley, C. Clowes, M. Yu, K. Mitchell, and K.E. Hentges The Mediator complex protein Med31 is required for embryonic growth and cell proliferation during mammalian development Dev. Biol. 342 2010 146 156
-
(2010)
Dev. Biol.
, vol.342
, pp. 146-156
-
-
Risley, M.D.1
Clowes, C.2
Yu, M.3
Mitchell, K.4
Hentges, K.E.5
-
61
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
A. Sanyal, B.R. Lajoie, G. Jain, and J. Dekker The long-range interaction landscape of gene promoters Nature 489 2012 109 113
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
62
-
-
0026453281
-
Thrombospondin cooperates with CD36 and the vitronectin receptor in macrophage recognition of neutrophils undergoing apoptosis
-
J. Savill, N. Hogg, Y. Ren, and C. Haslett Thrombospondin cooperates with CD36 and the vitronectin receptor in macrophage recognition of neutrophils undergoing apoptosis J. Clin. Invest. 90 1992 1513 1522
-
(1992)
J. Clin. Invest.
, vol.90
, pp. 1513-1522
-
-
Savill, J.1
Hogg, N.2
Ren, Y.3
Haslett, C.4
-
63
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Y. Shen, F. Yue, D.F. McCleary, Z. Ye, L. Edsall, S. Kuan, U. Wagner, J. Dixon, L. Lee, V.V. Lobanenkov, and B. Ren A map of the cis-regulatory sequences in the mouse genome Nature 488 2012 116 120
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
64
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
F. Spitz, and E.E. Furlong Transcription factors: from enhancer binding to developmental control Nat. Rev. Genet. 13 2012 613 626
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.2
-
65
-
-
50549083083
-
The canonical Wnt signaling pathway plays an important role in lymphopoiesis and hematopoiesis
-
F.J. Staal, and J.M. Sen The canonical Wnt signaling pathway plays an important role in lymphopoiesis and hematopoiesis Eur. J. Immunol. 38 2008 1788 1794
-
(2008)
Eur. J. Immunol.
, vol.38
, pp. 1788-1794
-
-
Staal, F.J.1
Sen, J.M.2
-
66
-
-
19744365010
-
Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst
-
D. Strumpf, C.A. Mao, Y. Yamanaka, A. Ralston, K. Chawengsaksophak, F. Beck, and J. Rossant Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst Development 132 2005 2093 2102
-
(2005)
Development
, vol.132
, pp. 2093-2102
-
-
Strumpf, D.1
Mao, C.A.2
Yamanaka, Y.3
Ralston, A.4
Chawengsaksophak, K.5
Beck, F.6
Rossant, J.7
-
67
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
K. Takahashi, and S. Yamanaka Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors Cell 126 2006 663 676
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
68
-
-
21644434750
-
The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription
-
S.J. Tapscott The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription Development 132 2005 2685 2695
-
(2005)
Development
, vol.132
, pp. 2685-2695
-
-
Tapscott, S.J.1
-
69
-
-
0029617947
-
Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome
-
D. Thanos, and T. Maniatis Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome Cell 83 1995 1091 1100
-
(1995)
Cell
, vol.83
, pp. 1091-1100
-
-
Thanos, D.1
Maniatis, T.2
-
70
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
R.E. Thurman, E. Rynes, R. Humbert, J. Vierstra, M.T. Maurano, E. Haugen, N.C. Sheffield, A.B. Stergachis, H. Wang, and B. Vernot The accessible chromatin landscape of the human genome Nature 489 2012 75 82
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
-
71
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
A. Visel, M.J. Blow, Z. Li, T. Zhang, J.A. Akiyama, A. Holt, I. Plajzer-Frick, M. Shoukry, C. Wright, and F. Chen ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 2009 854 858
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
72
-
-
0024381667
-
Activation of muscle-specific genes in pigment, nerve, fat, liver, and fibroblast cell lines by forced expression of MyoD
-
H. Weintraub, S.J. Tapscott, R.L. Davis, M.J. Thayer, M.A. Adam, A.B. Lassar, and A.D. Miller Activation of muscle-specific genes in pigment, nerve, fat, liver, and fibroblast cell lines by forced expression of MyoD Proc. Natl. Acad. Sci. USA 86 1989 5434 5438
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 5434-5438
-
-
Weintraub, H.1
Tapscott, S.J.2
Davis, R.L.3
Thayer, M.J.4
Adam, M.A.5
Lassar, A.B.6
Miller, A.D.7
-
73
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
W.A. Whyte, S. Bilodeau, D.A. Orlando, H.A. Hoke, G.M. Frampton, C.T. Foster, S.M. Cowley, and R.A. Young Enhancer decommissioning by LSD1 during embryonic stem cell differentiation Nature 482 2012 221 225
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
Bilodeau, S.2
Orlando, D.A.3
Hoke, H.A.4
Frampton, G.M.5
Foster, C.T.6
Cowley, S.M.7
Young, R.A.8
-
74
-
-
34250336511
-
PU.1 activates transcription of SHP-1 gene in hematopoietic cells
-
P. Wlodarski, Q. Zhang, X. Liu, M. Kasprzycka, M. Marzec, and M.A. Wasik PU.1 activates transcription of SHP-1 gene in hematopoietic cells J. Biol. Chem. 282 2007 6316 6323
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 6316-6323
-
-
Wlodarski, P.1
Zhang, Q.2
Liu, X.3
Kasprzycka, M.4
Marzec, M.5
Wasik, M.A.6
-
75
-
-
79956292024
-
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
-
H. Wu, A.C. D'Alessio, S. Ito, K. Xia, Z. Wang, K. Cui, K. Zhao, Y.E. Sun, and Y. Zhang Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells Nature 473 2011 389 393
-
(2011)
Nature
, vol.473
, pp. 389-393
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Xia, K.4
Wang, Z.5
Cui, K.6
Zhao, K.7
Sun, Y.E.8
Zhang, Y.9
-
76
-
-
84856460891
-
Regulation of mature T cell responses by the Wnt signaling pathway
-
H.H. Xue, and D.M. Zhao Regulation of mature T cell responses by the Wnt signaling pathway Ann. N Y Acad. Sci. 1247 2012 16 33
-
(2012)
Ann. N y Acad. Sci.
, vol.1247
, pp. 16-33
-
-
Xue, H.H.1
Zhao, D.M.2
-
77
-
-
84865754452
-
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
-
K.Y. Yip, C. Cheng, N. Bhardwaj, J.B. Brown, J. Leng, A. Kundaje, J. Rozowsky, E. Birney, P. Bickel, M. Snyder, and M. Gerstein Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors Genome Biol. 13 2012 R48
-
(2012)
Genome Biol.
, vol.13
, pp. 48
-
-
Yip, K.Y.1
Cheng, C.2
Bhardwaj, N.3
Brown, J.B.4
Leng, J.5
Kundaje, A.6
Rozowsky, J.7
Birney, E.8
Bickel, P.9
Snyder, M.10
Gerstein, M.11
-
78
-
-
79952660821
-
Control of the embryonic stem cell state
-
R.A. Young Control of the embryonic stem cell state Cell 144 2011 940 954
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
79
-
-
84861990517
-
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
-
M. Yu, G.C. Hon, K.E. Szulwach, C.X. Song, L. Zhang, A. Kim, X. Li, Q. Dai, Y. Shen, and B. Park Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome Cell 149 2012 1368 1380
-
(2012)
Cell
, vol.149
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
Song, C.X.4
Zhang, L.5
Kim, A.6
Li, X.7
Dai, Q.8
Shen, Y.9
Park, B.10
-
80
-
-
84869168809
-
The TCF-1 and LEF-1 transcription factors have cooperative and opposing roles in T cell development and malignancy
-
S. Yu, X. Zhou, F.C. Steinke, C. Liu, S.C. Chen, O. Zagorodna, X. Jing, Y. Yokota, D.K. Meyerholz, and C.G. Mullighan The TCF-1 and LEF-1 transcription factors have cooperative and opposing roles in T cell development and malignancy Immunity 37 2012 813 826
-
(2012)
Immunity
, vol.37
, pp. 813-826
-
-
Yu, S.1
Zhou, X.2
Steinke, F.C.3
Liu, C.4
Chen, S.C.5
Zagorodna, O.6
Jing, X.7
Yokota, Y.8
Meyerholz, D.K.9
Mullighan, C.G.10
-
81
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Y. Zhang, T. Liu, C.A. Meyer, J. Eeckhoute, D.S. Johnson, B.E. Bernstein, C. Nusbaum, R.M. Myers, M. Brown, W. Li, and X.S. Liu Model-based analysis of ChIP-Seq (MACS) Genome Biol. 9 2008 R137
-
(2008)
Genome Biol.
, vol.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
82
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
L.A. Boyer, K. Plath, J. Zeitlinger, T. Brambrink, L.A. Medeiros, T.I. Lee, S.S. Levine, M. Wernig, A. Tajonar, and M.K. Ray Polycomb complexes repress developmental regulators in murine embryonic stem cells Nature 441 2006 349 353
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
Lee, T.I.6
Levine, S.S.7
Wernig, M.8
Tajonar, A.9
Ray, M.K.10
-
83
-
-
0023663888
-
Expression of a single transfected cDNA converts fibroblasts to myoblasts
-
R.L. Davis, H. Weintraub, and A.B. Lassar Expression of a single transfected cDNA converts fibroblasts to myoblasts Cell 51 1987 987 1000
-
(1987)
Cell
, vol.51
, pp. 987-1000
-
-
Davis, R.L.1
Weintraub, H.2
Lassar, A.B.3
-
84
-
-
79953300078
-
FIMO: Scanning for occurrences of a given motif
-
C.E. Grant, T.L. Bailey, and W.S. Noble FIMO: scanning for occurrences of a given motif Bioinformatics 27 2011 1017 1018
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
85
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
S. Heinz, C. Benner, N. Spann, E. Bertolino, Y.C. Lin, P. Laslo, J.X. Cheng, C. Murre, H. Singh, and C.K. Glass Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities Mol. Cell 38 2010 576 589
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
86
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
W. Huang, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 4 2009 44 57
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
87
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
V. Matys, O.V. Kel-Margoulis, E. Fricke, I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, and K. Hornischer TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes Nucleic Acids Res. 34 Database issue 2006 D108 D110
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.DATABASE ISSUE
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
Barre-Dirrie, A.6
Reuter, I.7
Chekmenev, D.8
Krull, M.9
Hornischer, K.10
-
88
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
V.K. Mootha, C.M. Lindgren, K.F. Eriksson, A. Subramanian, S. Sihag, J. Lehar, P. Puigserver, E. Carlsson, M. Ridderstråle, and E. Laurila PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes Nat. Genet. 34 2003 267 273
-
(2003)
Nat. Genet.
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstråle, M.9
Laurila, E.10
-
89
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
K.D. Pruitt, T. Tatusova, and D.R. Maglott NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Nucleic Acids Res. 35 2007 D61 D65
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
90
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
P.B. Rahl, C.Y. Lin, A.C. Seila, R.A. Flynn, S. McCuine, C.B. Burge, P.A. Sharp, and R.A. Young c-Myc regulates transcriptional pause release Cell 141 2010 432 445
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
91
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
A. Subramanian, P. Tamayo, V.K. Mootha, S. Mukherjee, B.L. Ebert, M.A. Gillette, A. Paulovich, S.L. Pomeroy, T.R. Golub, E.S. Lander, and J.P. Mesirov Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc. Natl. Acad. Sci. USA 102 2005 15545 15550
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
92
-
-
0034677646
-
A novel transcription factor, T-bet, directs Th1 lineage commitment
-
S.J. Szabo, S.T. Kim, G.L. Costa, X. Zhang, C.G. Fathman, and L.H. Glimcher A novel transcription factor, T-bet, directs Th1 lineage commitment Cell 100 2000 655 669
-
(2000)
Cell
, vol.100
, pp. 655-669
-
-
Szabo, S.J.1
Kim, S.T.2
Costa, G.L.3
Zhang, X.4
Fathman, C.G.5
Glimcher, L.H.6
-
93
-
-
80955137934
-
Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs
-
M. Thomas-Chollier, A. Hufton, M. Heinig, S. O'Keeffe, N.E. Masri, H.G. Roider, T. Manke, and M. Vingron Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs Nat. Protoc. 6 2011 1860 1869
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1860-1869
-
-
Thomas-Chollier, M.1
Hufton, A.2
Heinig, M.3
O'Keeffe, S.4
Masri, N.E.5
Roider, H.G.6
Manke, T.7
Vingron, M.8
-
94
-
-
2542455620
-
Stepwise reprogramming of B cells into macrophages
-
H. Xie, M. Ye, R. Feng, and T. Graf Stepwise reprogramming of B cells into macrophages Cell 117 2004 663 676
-
(2004)
Cell
, vol.117
, pp. 663-676
-
-
Xie, H.1
Ye, M.2
Feng, R.3
Graf, T.4
|