DNA barcoding as a new tool for food traceability

Food Research International

Volumn 50, Issue 1, 2013, Pages 55-63

  Galimberti, Andrea ^a   De Mattia, Fabrizio ^a   Losa, Alessia ^a   Bruni, Ilaria ^a   Federici, Silvia ^a   Casiraghi, Maurizio ^a   Martellos, Stefano ^b   Labra, Massimo ^a  

^a UNIVERSITY OF MILANO BICOCCA   (Italy)

^b UNIVERSITY OF TRIESTE   (Italy)

Author keywords

Commercial fraud; DNA barcoding; Food safety; Food traceability; Raw material; Species identification

Indexed keywords

BIOLOGICAL SPECIMENS; COMMERCIAL FRAUD; DNA BARCODING; FOOD ANALYSIS; MOLECULAR TOOLS; PUBLIC OPINIONS; SCIENTIFIC RESEARCHES; SPECIES IDENTIFICATION;

COMPUTER CRIME; CRIME; FOOD SAFETY; RAW MATERIALS; SOCIAL ASPECTS;

DNA;

EID: 84868232013     PISSN: 09639969     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foodres.2012.09.036     Document Type: Review

References (150)

1. Agrimonti C., Vietina M., Pafundo S., Marmiroli N. The use of food genomics to ensure the traceability of olive oil. Trends in Food Science and Technology 2011, 22:237-244.
2. Arcuri E.F., El Sheikha A.F., Rychlik T., Piro-Métayer I., Montet D. Determination of cheese origin by using 16S rDNA fingerprinting of bacteria communities by PCR-DGGE: Preliminary application to traditional Minas cheese. Food Control 2013, 30:1-6.
3. Ardura A., Linde A.R., Moreira J.C., Garcia-Vazquez E. DNA barcoding for conservation and management of Amazonian commercial fish. Biological Conservation 2010, 143:1438-1443.
4. Arslan A., Ilhak O.I., Caliciogiu M. Effect of method of cooking on identification of heat processed beef using polymerase chain reaction (PCR) technique. Meat Science 2006, 72:326-330.
5. Aslan O., Hamill R.M., Sweeney T., Reardon W., Mullen A.M. Integrity of nuclear genomic deoxyribonucleic acid in cooked meat: Implications for food traceability. Journal of Animal Science 2009, 87:57-61.
6. Auer C.A. Tracking genes from seed to supermarket: Techniques and trends. Trends in Plant Science 2003, 8:591-597.
7. Badenes M.L., Parfitt D.E. Phylogenetic-relationships of cultivated Prunus species from an analysis of chloroplast DNA variation. Theoretical and Applied Genetics 1995, 90:1035-1041.
8. Barbuto M., Galimberti A., Ferri E., Labra M., Malandra R., Galli P., et al. DNA barcoding reveals fraudulent substitutions in shark seafood products: The Italian case of "palombo" (Mustelus spp.). Food Research International 2010, 43:376-381.
9. Bauer T., Weller P., Hammes W.P., Hertel C. The effect of processing parameters on DNA degradation in food. European Food Research and Technology 2003, 217:1438-2377.
10. Becker S., Hanner R., Steinke D. Five years of FISH-BOL: Brief status report. Mitochondrial DNA 2011, 22:3-9.
11. Boehme K., Fernandez-No I.C., Barros-Velazquez J., Gallardo J.M., Calo-Mata P., Canas B. Species differentiation of seafood spoilage and pathogenic gram-negative bacteria by MALDI-TOF mass fingerprinting. Journal of Proteome Research 2010, 9:3169-3183.
12. Boehme K., Fernandez-No I.C., Gallardo J.M., Canas B., Calo-Mata P. Safety assessment of fresh and processed seafood products by MALDI-TOF mass fingerprinting. Food and Bioprocess Technology 2011, 4:907-918.
13. Borelli B.M., Ferreira E.G., Lacerda I.C.A., Franco G.R., Rosa C.A. Yeast populations associated with the artisanal cheese produced in the region of Serra da Canastra, Brazil. World Journal of Microbiology and Biotechnology 2006, 22:1115-1119.
14. Bottero M.T., Dalmasso A. Animal species identification in food products: Evolution of biomolecular methods. Veterinary Journal 2011, 190:34-38.
15. Botti S., Giuffra E. Oligonucleotide indexing of DNA barcodes: Identification of tuna and other scombrid species in food products. BMC Biotechnology 2010, 10:60.
16. Bruni I., De Mattia F., Galimberti A., Galasso G., Banfi E., Casiraghi M., et al. Identification of poisonous plants by DNA barcoding approach. International Journal of Legal Medicine 2010, 124:595-603.
17. Burgess G.H., Beerkircher L.R., Cailliet G.M., Carlson J.K., Cortés E., Goldman K.J., et al. Is the collapse of shark populations in the Northwest Atlantic Ocean and Gulf of Mexico real?. Fisheries 2005, 30:19-26.
18. Burgess K.S., Fazekas A.J., Kesanakurti P.R., Graham S.W., Husband B.C., Newmaster S.G., et al. Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode. Methods in Ecology and Evolution 2011, 2:333-340.
19. Cai Y.S., Zhang L.A., Shen F.J., Zhang W.P., Hou R., Yue B.S., et al. DNA barcoding of 18 species of Bovidae. Chinese Science Bulletin 2011, 56:164-168.
20. Casiraghi M., Labra M., Ferri E., Galimberti A., De Mattia F. Dna barcoding: A six-question tour to improve users' awareness about the method. Briefings in Bioinformatics 2010, 11:440-453.
21. Chuang H., Lur H., Hwu K., Chang M. Authentication of domestic Taiwan rice varieties based on fingerprinting analysis of microsatellite DNA markers. Botanical Studies 2011, 52:393-405.
22. Cohen N.J., Deeds J.R., Wong E.S., Hanner R.H., Yancy H.F., White K.D., et al. Public health response to puffer fish (Tetrodotoxin) poisoning from mislabeled product. Journal of Food Protection 2009, 72:810-817.
23. Colombo F., Chess S., Cattaneo P., Bernardi C. Polymerase chain reaction products (PCR) on "DNA barcode zone" resolved by temporal temperature gradient electophoresis: A tool for species identification of mixed meat specimens-A technical note on preliminary results. Food Control 2011, 22:1471-1472.
24. Coppola S., Blaiotta G., Ercolini D., Moschetti G. Molecular evaluation of microbial diversity occurring in different types of Mozzarella cheese. Journal of Applied Microbiology 2001, 90:414-420.
25. Costa I., Mafra I., Amaral J.S., Oliveira M.B. Detection of genetically modified soybean DNA in refined vegetable oils. European Food Research And Technology 2010, 230:915-923.
26. Costa J., Mafra I., Carrapatoso I., Oliveira M.P. Almond allergens: Molecular characterization, detection, and clinical relevance. Journal of Agricultural and Food Chemistry 2012, 60:1337-1349.
27. Dalmacio L.M., Angeles A.K., Larcia L.L., Balolong M.P., Estacio R.C. Assessment of bacterial diversity in selected Philippine fermented food products through PCR-DGGE. Beneficial Microbes 2011, 2(4):273-281. (1).
28. Dawnay N., Ogden R., McEwing R., Carvalho G.R., Thorpe R.S. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Science International 2007, 173:1-6.
29. De Mattia F., Bruni I., Galimberti A., Cattaneo F., Casiraghi M., Labra M. A comparative study of different DNA barcoding markers for the identification of some members of Lamiacaea. Food Research International 2011, 44:693-702.
30. De Mattia F., Gentili R., Bruni I., Galimberti A., Sgorbati S., Casiraghi M., et al. A multi-marker DNA barcoding approach to save time and resources in vegetation surveys. Biological Journal of Linnean Society 2012, 169(3):518-529.
31. De Mattia F., Imazio S., Grassi F., Labra M. Chloroplast and nuclear DNA markers to characterize cultivated and spontaneous ribes accessions. Plant Biosystems 2008, 142:204-212.
32. Dolci P., Alessandria V., Rantsiou K., Bertolino M., Cocolin L. Microbial diversity, dynamics and activity throughout manufacturing and ripening of Castelmagno PDO cheese. International Journal of Food Microbiology 2010, 143:71-75.
33. Doulaty Baneh H., Grassi F., Mohammadi A., Nazemieh A., De Mattia F., Imazio S., et al. The use of AFLP and morphological markers to study Iranian grapevine germplasm to avoid genetic erosion. The Journal of Horticultural Science and Biotechnology 2007, 82:745-752.
34. Dunning L.T., Savolainen V. Broad-scale amplification of matK for DNA barcoding plants, a technical note. Botanical Journal of the Linnean Society 2010, 164:1-9.
35. El Sheikha A.F., Bouvet J.-M., Montet D. Biological bar-code for the determination of geographical origin of fruits by using 28S rDNA fingerprinting of fungal communities by PCR-DGGE: An application to Shea tree fruits. Quality Assurance and Safety of Crops and Foods 2011, 3:40-47.
36. El Sheikha A.F., Condur A., Métayer I., Le Nguyen D.D., Loiseau G., Montet D. Determination of fruit origin by using 26S rDNA fingerprinting of yeast communities by PCR-DGGE: An application to Physalis fruits from Egypt. Yeast 2009, 26:567-573.
37. El Sheikha A.F., Durand N., Sarter S., Okullo J.B.L., Montet D. Study of the microbial discrimination of fruits by PCR-DGGE: Application to the determination of the geographical origin of Physalis fruits from Colombia, Egypt, Uganda and Madagascar. Food Control 2012, 24(1-2):57-63.
38. El Sheikha A.F., Métayer I., Montet D. A biological bar-code for determining the geographical origin of fruit by using 28S rDNA fingerprinting of fungi communities by PCR-DGGE: An application to Physalis fruits from Egypt. Food Biotechnology 2011, 25(2):115-129.
39. Ercolini D. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. Journal of Microbiological Methods 2004, 56:297-314.
40. Ercolini D., Frisso G., Mauriello G., Salvatore F., Coppola S. Microbial diversity in natural whey cultures used for the production of CaciocavalloSilano PDO cheese. International Journal of Food Microbiology 2008, 124:164-170.
41. Fajardo V., Gonzàlez I., Rojas M., Garcìa T., Martìn R. A review of current PCR-based methodologies for the authentication of meats from game animal species. Trends in Food Science and Technology 2010, 21:408-421.
42. Fazekas A.J., Burgess K.S., Kesanakurti P.R., Graham S.W., Newmaster S.G., Husband B.C., et al. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS One 2008, 3:e2802.
43. Fazekas A.J., Kesanakurti P.R., Burgess K.S., Percy D.M., Graham S.W., Barrett S.C.H., et al. Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?. Molecular Ecology Resources 2009, 9:130-139.
44. Ferri E., Barbuto M., Bain O., Galimberti A., Uni S., Guerrero R., et al. Integrated taxonomy: Traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda). Frontiers in Zoology 2009, 6:1.
45. Filonzi L., Chiesa S., Vaghi M., Nonnis Marzano F. Molecular barcoding reveals mislabelling of commercial fish products in Italy. Food Research International 2010, 43:1383-1388.
46. Food and Water Watch Import alert: Government fails consumers, falls short on seafood inspections 2007, Food and Water Watch, Washington, DC, (24 pp.).
47. Francis C.M., Borisenko A.V., Ivanova N.V., Eger J.L., Lim B.K., Guillén-Servent A., et al. The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PLoS One 2010, 5:e12575.
48. Fügel R., Carle R., Schieber A. Quality and authenticity control of fruit purées, fruit preparations and jams-A review. Trends in Food Science and Technology 2005, 16:433-441.
49. Galimberti A., Martinoli A., Russo D., Mucedda M., Casiraghi M. Molecular identification of Italian Mouse-eared bats (genus Myotis). Tools for identifying biodiversity: Progress and problems 2010, 289-294. (Proceedings of the International Congress). P.L. Nimis, R. Vignes Lebbe (Eds.).
50. Galimberti A., Romano D.F., Genchi M., Paoloni D., Vercillo F., Bizzarri L., et al. Integrative taxonomy at work: DNA barcoding of taeniids harboured by wild and domestic cats. Molecular Ecology Resources 2012, 10.1111/j.1755-0998.2011.03110.x.
51. Grassi F., Labra M., Minuto L. Molecular diversity in Ligurian local races of common beans (Phaseolus vulgaris L.). Plant Biosystems 2006, 140:17-20.
52. Guallar E., Sanz-Gallardo M.I., van't Veer P., Bode P., Aro A., Gómez-Aracena J., et al. Mercury, fish oils, and the risk of myocardial infarction. The New England Journal of Medicine 2002, 347:1747-1754.
53. Hajibabaei M., Shokralla S., Zhou X., Singer G.A.C., Baird D.J. Environmental barcoding: A next-generation sequencing approach for biomonitoring applications using river benthos. PLoS One 2011, 6:e17497.
54. Hajibabaei M., Singer G.A., Clare E.L., Hebert P.D.N. Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring. BMC Biotechnology 2007, 5:24.
55. Hajibabaei M., Smith M.A., Janzen D.H., Rodriguez J.J., Whitfield J.B., Hebert P.D.N. A minimalist barcode can identify a specimen whose DNA is degraded. Molecular Ecology Notes 2006, 6:959-964.
56. Haye P.A., Segovia N.I., Vera R., Gallardo M., Gallardo-Escàrate C. Authentication of commercialized crab-meat in Chile using DNA barcoding. Food Control 2012, 25:239-244.
57. Hebert P.D.N., Gregory T.R. The promise of DNA barcoding for taxonomy. Systems Biology 2005, 54:852-859.
58. Hebert P.D.N., Ratnasingham S., deWaard J.R. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society B: Biological Science 2003, 270:S96-S99.
59. Hebert P.D.N., Stoeckle M.Y., Zemlak T.S., Francis C.M. Identification of birds through DNA barcodes. PLoS Biology 2004, 2:1657-1663.
60. Hellberg R.S., Morrisey M.T. Advances in DNA-based techniques for the detection of seafood species substitution on the commercial market. Journal of Laboratory Automation 2011, 16:308-321.
61. Hird H., Goodier R., Hill M. Rapid detection of chicken and turkey in heated meat products using the polymerase chain reaction followed by amplicon visualisation vista green. Meat Science 2003, 65:1117-1123.
62. Hollingsworth M.L., Clark A.A., Forrest L.L., Richardson J., Pennington R.T., Long D.G., et al. Selecting barcoding loci for plants: Evaluation of seven candidate loci with species level sampling in three divergent groups of land plants. Molecular Ecology Resources 2009, 9:439-457.
63. Hollingsworth P.M., Graham S.W., Little D.P. Choosing and using a plant DNA barcode. PLoS One 2011, 6:e19254.
64. Holmes B.H., Steinke D., Ward R.D. Identification of shark and ray fins using DNA barcoding. Fisheries Research 2009, 95:280-288.
65. Hosseini H., Hippe B., Denner E., Kollegger E., Haslberger A. Isolation, identification and monitoring of contaminant bacteria in Iranian Kefir type drink by 16S rDNA sequencing. Food Control 2012, 25:784-788.
66. Hubalkova Z., Rencova E. One-step multiplex PCR method for the determination of pecan and Brazil nut allergens in food products. Journal of the Science of Food and Agriculture 2011, 91:2407-2411.
67. Hubert N., Hanner R., Holm E., Mandrak N.E., Taylor E., Burridge M., et al. Identifying Canadian freshwater fishes through DNA barcodes. PLoS One 2008, 3:e2490.
68. Ibrahim A.A. Improved DNA extraction method for porcine contaminants, detection in imported meat to the Saudi market. Saudi Journal of Biological Sciences 2008, 15:225-229.
69. Jaakola L., Suokas M., Häggman H. Novel approaches based on DNA barcoding and high-resolution melting of amplicons for authenticity analyses of berry species. Food Chemistry 2010, 123:494-500.
70. Kane N.C., Cronk Q. Botany without borders, barcoding in focus. Molecular Ecology 2008, 17:5175-5176.
71. Kesmen Z., Sahin F., Yetim H. PCR assay for the identification of animal species in cooked sausages. Meat Science 2007, 77:649-653.
72. Kikkawa Y., Takada T., Sutopo Nomura K., Namikawa T., Yonekawa H., Amano T. Phylogenies using mtDNA and SRY provide evidence for male-mediated introgression in Asian domestic cattle. Animal Genetics 2003, 34:96-101.
73. Knight A., Ortola-Vidal A., Schnerr H., Rojmyr M., Lysholm F. Quantitative identification of plant genera in food products using PCR and Pyrosequencing reg technology. Food Control 2007, 18:921-927.
74. Konczak I., Roulle P. Nutritional properties of commercially grown native Australian fruits: Lipophilic antioxidants and minerals. Food Research International 2011, 44:2339-2344.
75. Kress W.J., Erickson D.L., Swenson N.G., Thompson J., Uriarte M., Zimmerman J.K. Advances in the use of DNA barcodes to build a community phylogeny for tropical trees in a Puerto Rican forest dynamics plot. PLoS One 2010, 5:e15409.
76. Kumar P., Gupta V.K., Misra A.K., Modi D.R., Pandey B.K. Potential of molecular markers in plant biotechnology. Plant Omics 2009, 2:141-162.
77. Kurtz C., Leitenberger M., Carle R., Schieber A. Evaluation of fruit authenticity and determination of the fruit content of fruit products using FTNIR spectroscopy of cell wall components. Food Chemistry 2010, 119:806-812.
78. Labra M., Imazio S., Grassi F., Rossoni M., Citterio S., Sgorbati S., et al. Molecular approach to assess the origin of cv. Marzemino. Vitis 2003, 42:137-140.
79. Labra M., Miele M., Ledda B., Grassi F., Mazzei M., Sala F. Morphological characterization, essential oil composition and DNA genotyping of Ocimum basilicum L. cultivars. Plant Science 2004, 167:725-731.
80. Le Nguyen D.D., Ha H., Dijoux D., Loiseauet G., Montet D. Determination of fish origin by using 16S rDNA fingerprinting of bacterial communities by PCR-DGGE: Application on Pangasius fish from Vietnam. Food Control 2008, 19:454-460.
81. Leimanis S., Hernández M., Fernández S., Boyer F., Burns M., Bruderer S., et al. A microarray-based detection system for genetically modified (GM) food ingredients. Plant Molecular Biology 2006, 61:123-139.
82. Li D.Z., Gao L.M., Li H.T., Wang H., Gea X.-J., Liu J.Q., et al. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences of the United States of America 2011, 108:19641-19646.
83. Lockley A.K., Bardsley R.G. DNA-based methods for food authentication. Trends in Food Science and Technology 2000, 11:67-77.
84. Ludt C.J., Schroeder W., Rottmann O., Kuehn R. Mitochondrial DNA phylogeography of red deer (Cervus elaphus). Molecular Phylogenetics and Evolution 2004, 31:1064-1083.
85. Luo A.R., Zhang A.B., Ho S.Y.W., Xu W.J., Zhang Y.Z., Shi W.F., et al. Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals. BMC Genomics 2011, 12:84. 10.1186/1471-2164-12-84.
86. Mafra I., Ferreira I.M.P.V.O., Oliveira M.B.P.P.O. Food authentication by PCR-based methods. European Food Research and Technology 2008, 227:649-665.
87. Mane B.G., Mendiratta S.K., Tiwari A.K. Polymerase chain reaction assay for identification of chicken in meat and meat products. Food Chemistry 2009, 116:806-810.
88. Mane B.G., Tanwar V.K., Girish P.S., Dixit V.P. Identification of species origin of meat by RAPD-PCR technique. Journal of Veterinary Public Health 2006, 4:87-90.
89. Manel S., Berthier P., Luikart G. Detecting wildlife poaching: identifying the origin of individuals using Bayesian assignment tests and multi-locus genotypes. Conservation Biology 2002, 16:650-659.
90. Martin I., Garcia T., Fajardo V., Rojas M., Hernàndez P.E., Gonzàlez I., et al. Detection of horse DNA in food and feedstuffs using a polymerase chain reaction assay. Journal of the Science of Food and Agriculture 2009, 89:1202-1206.
91. Martinez I., Aursand M., Erikson U., Singstad T.E., Veliyulin E., van der Zwaag C. Destructive and non-destructive analytical techniques for authentication and composition analyses of foodstuffs. Trends in Food Science and Technology 2003, 14:489-498.
92. Maskova E., Paulickova I., Rysova J., Gabrovska D. Evidence for wheat, rye, and barley presence in gluten free foods by PCR method-Comparison with Elisa method. Czech Journal of Food Sciences 2012, 29:45-50.
93. Meusnier I., Singer G.A., Landry J.F., Hickey D.A., Hebert P.D., Hajibabaei M. A universal DNA mini-barcode for biodiversity analysis. BMC Genomics 2008, 9:214.
94. Meyer C.P., Paulay G. DNA barcoding: Error rates based on comprehensive sampling. PLoS Biology 2005, 3:e422.
95. Montet D., Le Nguyen D.D., El Sheikha A.F. Application PCR-DGGE in determining food origin: Case studies of fish and fruits. Aspects of Applied Biology 2008, 87:11-22.
96. Montiel-Sosa J.F., Ruiz-Pesini E., Montoya J., Roncalés P., López-Pérez M.J., Pérez-Martos A. Direct and highly species-specific detection of pork meat and fat in meat products by PCR amplification of mitochondrial DNA. Journal of Agricultural and Food Chemistry 2000, 48:2829-2832.
97. Mower J.P., Touzet P., Gummow J., Delph L.F., Palmer J.D. Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. BMC Evolutionary Biology 2007, 7:135.
98. Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 1993, 59:695-700.
99. Myers M.J. Molecular identification of animal species in food: Transition from research laboratories to the regulatory laboratories. Veterinary Journal 2011, 190:7-8.
100. Naro-Maciel E., Reid B., Holmes K.E., Brumbaugh D.R., Martin M., DeSalle R. Mitochondrial DNA sequence variation in spiny lobsters: Population expansion, panmixia, and divergence. Marine Biology 2011, 158:2027-2041.
101. Nemeth A., Wurz A., Artim L., Charlton S., Dana G., Glenn K., et al. Sensitive PCR analysis of animal tissue samples for fragments of endogenous and transgenic plant DNA. Journal of Agricultural and Food Chemistry 2004, 52(20):6129-6135.
102. Nicolè S., Erickson D.L., Ambrosi D., Bellucci E., Lucchin M., Papa R., et al. Biodiversity studies in Phaseolus species by DNA barcoding. Genome 2011, 54:529-545.
103. Nijman I.J., Otsen M., Verkaar E.L., de Ruijter C., Hanekamp E., Ochieng J.W., et al. Hybridization of banteng (Bos javanicus) and zebu (Bos indicus) revealed by mitochondrial DNA, satellite DNA, AFLP and microsatellites. Heredity 2003, 90:10-16.
104. Nikolic Z., Taski-Ajdukovic K., Jevtic A., Marinkovic D. Detection of GM soybean in food products by simultaneous employment of three pairs of PCR primers. Food Research International 2009, 42:349-352.
105. Nock C.J., Waters D.L., Edwards M.A., Bowen S.G., Rice N., Cordeiro G.M., et al. Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnology Journal 2011, 9:328-333.
106. Novak I., Gruber-Gréger G., Lukas B. DNA-based authentication of plant extracts. Food Research International 2007, 40:388-392.
107. Pafundo S., Agrimonti C., Maestri E., Marmiroli N. Applicability of SCAR markers to food genomics: Olive oil traceability. Journal of Agricultural and Food Chemistry 2007, 55:6052-6059.
108. Parks M., Cronn R., Liston A. Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes. BMC Biology 2009, 7:84.
109. Pasqualone A., Lotti C., Blanco A. Identification of durum wheat cultivars and monovarietal semolinas by analysis of DNA microsatellites. European Food Research and Technology 1999, 210:144-147.
110. Pereira C., Barros L., Carvalho A.M., Ferreira I.C.F.R. Nutritional composition and bioactive properties of commonly consumed wild greens: Potential sources for new trends in modern diets. Food Research International 2011, 44:2634-2640.
111. Peres B., Barlet N., Loiseau G., Montet D. Review of the current methods of analytical traceability allowing determination of the origin of foodstuffs. Food Control 2007, 18:228-235.
112. Ponzoni E., Mastromauro F., Gianì S., Breviario D. Traceability of plant diet contents in raw cow milk samples. Nutrients 2009, 1(2):251-262.
113. Rasmussen R.S., Morrisey M.T. DNA-based methods for the identification of commercial fish and seafood species. Comprehensive Reviews in Food Science and Food Safety 2008, 7:280-295.
114. Rasmussen R.S., Morrissey M.T., Hebert P.D.N. DNA barcoding of commercially important salmon and trout species Oncorhynchus and Salmo) from North America. Journal of Agricultural and Food Chemistry 2009, 57:8379-8385.
115. Ratnasingham S., Hebert P.D.N. BOLD: the barcode of life datasystem (www.barcodinglife.org). Molecular Ecology Notes 2007, 7:355-364.
116. Raye G., Miquel C., Coissac E., Redjadj C., Loison A., Taberlet P. New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: Chamois diet in autumn as a case study. Ecological Research 2011, 26:265-276.
117. Ren X., Zhu X., Warndorff M., Bucheli P., Shu Q. DNA extraction and fingerprinting of commercial rice cereal products. Food Research International 2006, 39:433-439.
118. Sakai Y., Ishihata K., Nakano S., Yamada T., Yano T., Uchida K., et al. Specific detection of banana residue in processed foods using polymerase chain reaction. Journal of Agricultural and Food Chemistry 2010, 58:8145-8151.
119. Salem H.H., Ali B.A., Huang T.H., Qin D.N., Wang X.M., Xie Q.D. Use of random amplified polymorphic DNA analysis for economically important food crops. Journal of Integrative Plant Biology 2007, 49:1670-1680.
120. Shaw J., Lickey E.B., Schilling E.E., Small R.L. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III. American Journal of Botany 2007, 94:275-288.
121. Shikongo-Nambabi M.N.N.N., Chimwamurombe P.M., Venter S.N. Factors impacting on the microbiological quality and safety of processed hake. African Journal of Biotechnology 2010, 9:8405-8411.
122. Shokralla S., Singer G.A., Hajibabaei M. Direct PCR amplification and sequencing of specimens' DNA from preservative ethanol. Biotechniques 2010, 48:233-234.
123. Shokralla S., Zhou X., Janzen D.H., Hallwachs W., Landry J.F., Jacobus L.M., et al. Pyrosequencing for mini-barcoding of fresh and old museum specimens. PLoS One 2011, 6:e21252.
124. Smith P.J., McVeagh S.M., Steinke D. DNA barcoding for the identification of smoked fish products. Journal of Fish Biology 2008, 72:464-471.
125. Soares S., Mafra I., Amaral J.S., Oliveira M.B.P.P. A PCR assay to detect trace amounts of soybean in meat sausages. International Journal of Food Science and Technology 2010, 45:2581-2588.
126. Soininen E.M., Valentini A., Coissac E., Miquel C., Gielly L., Brochmann C., et al. Analysing diet of small herbivores: The efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Frontiers in Zoology 2009, 6:16.
127. Steele P.R., Pires J.C. Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification. American Journal of Botany 2011, 98:415-425.
128. Steinke D., Hanner R. The FISH-BOL collaborators' protocol. Mitochondrial DNA 2011, 22:10-14.
129. Steinke D., Zemlak T.S., Gavin H., Hebert P.D.N. DNA barcoding of Pacific Canada's fishes. Marine Biology 2009, 156:2641-2647.
130. Stoeckle M.Y., Gamble C.C., Kirpekar R., Yung G., Ahmed S., Little D.P. Commercial teas highlight plant DNA barcode identification successes and obstacles. Nature Scientific Reports 2011, 1:42.
131. Teletchea F. Molecular identification methods of fish species: Reassessment and possible applications. Reviews in Fish Biology and Fisheries 2009, 19:265-293.
132. Teletchea F., Bernillon J., Duffraisse M., Laudet V., Hänni C. Molecular identification of vertebrate species by oligonucleotide microarray in food and forensic samples. Journal of Applied Ecology 2008, 45:967-975.
133. Teletchea F., Maudet C., Hänni C. Food and forensic molecular identification: Update and challenges. Trends in Biotechnology 2005, 23:359-366.
134. Terzi V., Morcia C., Gorrini A., Stanca A.M., Shewry P.R., Faccioli P. DNA-based methods for identification and quantitication of small grain cereal mixtures and fingerprinting of varieties. Journal of Cereal Science 2005, 41:213-220.
135. Uthicke S., Byrne M., Conand C. Genetic barcoding of commercial Bêche-de-mer species (Echinodermata: Holothuroidea). Molecular Ecology Resources 2010, 10:634-646.
136. Valdez-Moreno M., Ivanova N.V., Elias-Gutierrez M., Contreras-Balderas S., Hebert P.D.N. Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. Journal of Fish Biology 2009, 74:377-402.
137. Valentini A., Pompanon F., Taberlet P. DNA barcoding for ecologists. Trends In Ecology and Evolution 2009, 24:110-117.
138. Van Geel B., Fisher D.C., Rountrey A.N., van Arkel J., Duivenvoorden J.F., Nieman A.M., et al. Palaeo-environmental and dietary analysis of intestinal contents of a mammoth calf (Yamal Peninsula, northwest Siberia). Quaternary Science Reviews 2011, 30:3935-3946.
139. Vargas M.L., Cruickshank R.H., Ross J.G., Holyoake A.J., Ogilvie S.C., Paterson A.M. Noninvasive recovery and detection of possum Trichosurus vulpecula DNA from bitten bait interference devices (WaxTags). Molecular Ecology Resources 2009, 9:505-515.
140. Verkaar E.L.C., Vervaecke H., Roden C., Romero Mendoza L., Barwegen M.W., Susilawati T., et al. Paternally inherited markers in bovine hybrid populations. Heredity 2003, 91:565-569.
141. Ward R.D., Hanner R., Hebert P.D.N. The campaign to DNA barcode all fishes, FISH-BOL. Journal of Fish Biology 2009, 74:329-356.
142. Ward R.D., Zemlak T.S., Innes B.H., Last P.R., Hebert P.D.N. DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B 2005, 360:1847-1857.
143. Wong E.H.K., Hanner R.H. DNA barcoding detects market substitution in North American seafood. Food Research International 2008, 41:828-837.
144. Wong L.L., Peatman E., Lu J., Kucuktas H., He S., Zhou C., et al. DNA barcoding of catfish: Species authentication and phylogenetic assessment. PLoS One 2011, 6:e17812.
145. Woolfe M., Primrose S. Food forensics: using DNA technology to combat misdescription and fraud. Trends in Biotechnology 2004, 22:222-226.
146. Xie Y., McNally K., Li C.Y., Leung H., Zhu Y.Y. A high-throughput genomic tool: Diversity array technology complementary for rice genotyping. Journal of Integrative Plant Biology 2006, 48:1069-1076.
147. Yancy H.F., Zemlak T.S., Mason J.A., Washington J.D., Tenge B.J., Nguyen N.-L., et al. The potential use of DNA barcodes in regulatory science: Applications of the regulatory fish encyclopedia. Journal of Food Protection 2008, 71:210-217.
148. Yano T., Sakai Y., Uchida K., Nakao Y., Ishihata K., Nakano S., et al. Detection of walnut residues in processed foods by polymerase chain reaction. Bioscience, Biotechnology, and Biochemistry 2007, 71:1793-1796.
149. Zeale M.R.K., Butlin R.K., Barker G.L.A., Lees D.C., Jones G. Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces. Molecular Ecology Resources 2011, 11:236-244.
150. Zheng X.W., Yan Z., Han B.Z., Zwietering M.H., Samson R.A., Boekhout T., et al. Complex microbiota of a Chinese "Fen" liquor fermentation starter (Fen-Daqu), revealed by culture-dependent and culture-independent methods. Food Microbiology 2012, 31:293-300.