A comparative study of different DNA barcoding markers for the identification of some members of Lamiacaea

Food Research International

Volumn 44, Issue 3, 2011, Pages 693-702

  De Mattia, Fabrizio ^a   Bruni, Ilaria ^a   Galimberti, Andrea ^a   Cattaneo, Francesca ^a   Casiraghi, Maurizio ^a   Labra, Massimo ^a  

^a UNIVERSITY OF MILANO BICOCCA   (Italy)

Author keywords

Aromatic plant; DNA barcoding; Food traceability; Lamiaceae; Plastidial DNA markers

Indexed keywords

AROMATIC PLANTS; DNA BARCODING; FOOD TRACEABILITY; LAMIACEAE; PLASTIDIAL DNA MARKERS;

AROMATIC COMPOUNDS; AROMATIZATION; BAR CODES; DNA; NUCLEIC ACIDS; OILS AND FATS; PLANTS (BOTANY);

GENE ENCODING;

LAMIACEAE; MAGNOLIOPHYTA; MENTHA; OCIMUM; ORIGANUM; ROSMARINUS; ROSMARINUS OFFICINALIS; SALVIA; THYMUS (THYME);

EID: 79952362274     PISSN: 09639969     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foodres.2010.12.032     Document Type: Article

References (42)

1. Azizi A., Wagner C., Honermeier B., Wolfgang F. Intraspecific diversity and relationship between subspecies of Origanum vulgare revealed by comparative AFLP and SAMPL marker analysis. Plant Systematics and Evolution 2009, 281:151-160.
2. Barbuto M., Galimberti A., Ferri E., Labra M., Malandra R., Galli P., et al. DNA barcoding reveals fraudulent substitutions in shark seafood products: The Italian case of "palombo" (Mustelus spp.). Food Research International 2010, 43:376-381.
3. Baser K.H.C., Azek T., Tümen G., Sezik E. Composition of the essential oils of Turkish Origanum species with commercial importance. Journal of Essential Oil Research 1993, 5:619-623.
4. Bruni I., De Mattia F., Galimberti A., Galasso G., Banfi E., Casiraghi M., et al. Identification of poisonous plants by DNA barcoding approach. International Journal of Legal Medicine 2010, 10.1007/s00414-010-0447-3.
5. Carovic-Stanko K., Liber Z., Besendorfer V., Javornik B., Bohanec B., Kolak I., et al. Genetic relations among basil taxa (Ocimum L.) based on molecular markers, nuclear DNA content, and chromosome number. Plant Systematics and Evolution 2010, 285:13-22.
6. Casiraghi M., Labra M., Ferri E., Galimberti A., De Mattia F. DNA barcoding: A six-question tour to improve users' awareness about the method. Briefings in Bioinformatics 2007, 11:440-453.
7. Chase M.W., Cowan R.S., Hollingsworth P.M., van den Berg C., Madriñán S., Petersen G., et al. A proposal for a standardized protocol to barcode all land plants. Taxon 2007, 56:295-299.
8. Chase M.W., Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., Haidar N., et al. Land plants and DNA barcodes: Short-term and long-term goals. Philosophical Transactions of the Royal Society B: Biological Sciences 2005, 360:1889-1895.
9. Chen S., Yao H., Han J., Liu C., Song J., Shi L., et al. Validation of the ITS2 Region as a novel DNA Barcode for identifying medicinal plant species. PLoS ONE 2010, 5:e8613.
10. Commission of the European Communities White paper on food safety COM (1999) 719 final 2000, Bruxelles, Belgium.
11. Costa J., Mafra I., Amaral I.S., Oliveira M.B.P.P. Monitoring genetically modified soybean along the industrial soybean oil extraction and refining processes by polymerase chain reaction techniques. Food Research International 2010, 43:301-306.
12. Cuènoud P., Savolainen V., Chatrou L.W., Powell M., Grayer R.J., Chase M.W. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB and matK DNA sequences. American Journal of Botany 2002, 89:132-144.
13. Dalvit C., De Marchi M., Targhetta C., Gervaso M., Cassandro M. Genetic traceability of meat using microsatellite markers. Food Research International 2008, 41:301-307.
14. Dhanya K., Sasikumar B. Molecular marker based adulteration detection in traded food and agricultural commodities of plant origin with special reference to spices. Current Trends in Biotechnology and Pharmacy 2010, 4:454-489.
15. European Commission Regulation (EC) No. 178/2002 of the European Parliament and of the Council of 28 January 2002 laying down the general principles and requirements of food law, establishing the European Food Safety Authority and laying down procedures in matters of food safety. Official Journal of the European Communities 2002, L31:1-24.
16. Fay M.F., Bayer C., Alverson W.S., de Bruijn A.Y., Chase M.W. Plastid rbcL sequence data indicate a close affinity between Diegodendron and Bixa. Taxon 1998, 47:43-50.
17. Fazekas A.J., Burgess K.S., Kesanakurti P.R., Graham S.W., Newmaster S.G., Husband B.C., et al. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS ONE 2008, 3:e2802.
18. Fazekas A.J., Steeves R., Newmaster S.G. Improving sequencing quality from PCR products containing long mononucleotide repeats. Biotechniques 2010, 48:277-285.
19. Fazekas A.J., Steeves R., Newmaster S.G., Hollingsworth P.M. Stopping the stutter: Improvements in sequence quality from regions with mononucleotide repeats can increase the usefulness of non-coding regions for DNA barcoding. Taxon 2010, 59:694-697.
20. Gobert V., Moja S., Colson M., Taberlet P. Hybridization in the section Mentha (Lamiaceae) inferred from AFLP markers. American Journal of Botany 2002, 89:2017-2023.
21. Gounaris Y., Skoula M., Fournaraki C., Drakakaki G., Makris A. Comparison of essential oils and genetic relationship of Origanum x intercedens to its parental taxa in the island of Crete. Biochemical Systematics and Ecology 2002, 30:249-258.
22. Gurcharan S.S. Plant systematics: An integrated approach 2004, Science Publishers, Enfield, NH.
23. Hebert P.D.N., Cywinska A., Ball S.L., DeWaard J.R. Biological identification through DNA barcodes. Proceedings of the Royal Society of London. Series B 2003, 270:313-321.
24. Hollingsworth M.L., Clark A., Forrest L.L., Richardson J.E., Pennington R.T., Long D., et al. Selecting barcoding loci for plants: Evaluation of seven candidate loci with species level sampling in three divergent groups of land plants. Molecular Ecology Resources 2009, 9:439-457.
25. Hollingsworth P.M., Forresta L.L., Spougeb J.L., Ratnasingham M.H.S., van der Bank M., Chase M.W., et al. A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 2009, 106:12794-12797.
26. Kress W.J., Erickson D.L. A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2007, 2:e508.
27. Kress W.J., Wurdack K.J., Zimmer E.A., Weigt L.A., Janzen D.H. Use of DNA barcodes to identify flowering plants. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:8369-8374.
28. Labra M., Miele M., Ledda B., Grassi F., Mazzei M., Sala F. Morphological characterization, essential oil composition and DNA genotyping of Ocimum basilicum L. cultivars. Plant Science 2004, 167:725-731.
29. Le Clerc-Blain J.R., Starr J., Bull R.D., Saarela J.M. A regional approach to plant DNA barcoding provides high species resolution of sedges (Carex and Kobresia, Cyperaceae) in the Canadian Arctic Archipelago. Molecular Ecology Resources 2009, 10:69-91.
30. Lefébure T., Douady C.J., Gouy M., Gibert J. Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation. Molecular Phylogenetics and Evolution 2006, 40:435-447.
31. Marieschi M., Torelli A., Poli F., Sacchetti G., Bruni R. RAPD-based method for the quality control of Mediterranean Oregano and its contribution to pharmacognostic techniques. Journal of Agricultural and Food Chemistry 2009, 57:1835-1840.
32. Newmaster S.G., Ragupathy S. Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae). Molecular Ecology Resources 2009, 9:172-180.
33. Novak J., Lukas B., Bolzer K., Grausgruber-Gröger S., Degenhardt J. Identification and characterization of simple sequence repeat markers from a glandular Origanum vulgare expressed sequence tag. Molecular Ecology Notes 2008, 8:599-601.
34. Paton A., Harley M.R., Harley M.M. Ocimum: An overview of classification and relationships. Basil: The genus Ocimum 1999, 1-38. Harwood, Amsterdam. R. Hiltunen, Y. Holm (Eds.).
35. Pignatti S. Flora d'Italia 1982, Bologna Ed. Agricole, Italy.
36. Sasikumar B., Syamkumar S., Remya R., Zachariah T.J. PCR based detection of adulteration in the market samples of turmeric powder. Food Biotechnology 2004, 18:299-306.
37. Segarra-Moragues J.G., Gleiser G. Isolation and characterisation of di and tri nucleotide microsatellite loci in Rosmarinus officinalis (Lamiaceae), using enriched genomic libraries. Conservation Genetics 2009, 10:571-575.
38. Tamura K., Dudley J., Nei M., Kumar S. MEGA 4: Molecular evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599.
39. Trindade H. Molecular biology of aromatic plants and spices. Flavour and Fragrance Journal 2007, 25:272-281.
40. Tucker A.O. The truth about mints. Herb Companion 1992, 4:51-52.
41. Vohra R., Seefeld A., Cantrell F.L., Clark R.F. Salvia divinorum: Exposures reported to a statewide poison control system over 10years. The Journal of Emergency Medicine 2009, 10.1016/j.jemermed.2009.05.019.
42. Wong E.H.K., Hanner R.H. DNA barcoding detects market substitution in North American seafood. Food Research International 2008, 41:828-837.