Assessment of bacterial diversity in selected Philippine fermented food products through PCR-DGGE

Beneficial Microbes

Volumn 2, Issue 4, 2011, Pages 273-281

  Dalmacio, L M M ^a   Angeles, A K J ^b   Larcia, L L H ^c   Balolong, M P ^b   Estacio, R C ^a  

^a UNIVERSITY OF THE PHILIPPINES MANILA   (Philippines)

^b University of the Philippines Manila College of Arts and Sciences   (Philippines)

^c UNIVERSITY OF THE PHILIPPINES MANILA   (Philippines)

Author keywords

16S rDNA; Acetic acid bacteria; DNA sequencing; Lactic acid bacteria; Probiotics

Indexed keywords

DNA 16S; GENOMIC DNA; RNA 16S; BACTERIAL DNA; RIBOSOME DNA;

ACETOBACTER; ACETOBACTER GHANENSIS; ACETOBACTER ORIENTALIS; ACETOBACTER PASTEURIANUS; ACETOBACTER POMORUM; ARTICLE; BACTERIUM IDENTIFICATION; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA ISOLATION; DNA SEQUENCE; FERMENTED PRODUCT; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS FERMENTUM; LACTOBACILLUS PANIS; LACTOBACILLUS PLANTARUM; LACTOBACILLUS PONTIS; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; WEISELLA CIBARIA; BACTERIUM; BIOTA; CHEMISTRY; CLASSIFICATION; FOOD CONTROL; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHILIPPINES;

BACTERIA; BIOTA; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FOOD MICROBIOLOGY; MOLECULAR SEQUENCE DATA; PHILIPPINES; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84858601358     PISSN: 18762883     EISSN: 18762891     Source Type: Journal    
DOI: 10.3920/BM2011.0017     Document Type: Article

References (34)

1. Beek, S. and Priest, F.G., 2001. Evolution of the lactic acid bacterial community during malt whisky fermentation: a polyphasic study. Applied and Environmental Microbiology 68: 297-305.
2. Ben Omar, N. and Ampe, F., 2000. Microbial community dynamics during production of the Mexican fermented maize dough pozol. Applied and Environmental Microbiology 66: 3664-3673.
3. Camu, N., De Winter, T., Verbrugghe, K., Cleenwerck, I., Vandamme, P., Takrama, J.S., Vancanneyt, M. and Vuyst, L.C., 2007. Dynamics and biodiversity of populations of lactic acid bacteria and acetic acid bacteria involved in spontaneous heap fermentation of cocoa beans in Ghana. Applied and Environmental Microbiology 73: 1809-1824.
4. Chatterjee, A., Bhattacharya, H. and Kandwal, A., 2010. Probiotics in periodontal health and disease. Journal of Indian Society of Periodontology 15: 23-18.
5. Choi, H.J., Cheigh, C.I., Kim, S.B., Lee, J.C., Lee, D.W., Choi, S.W., Park, J.M. and Pyun, Y.R., 2002. Weissella kimchii sp. nov., a novel lactic acid bacterium from kimchi. International Journal of Systematic and Evolutionary Microbiology 52: 507-511.
6. Clarridge III., J.E., 2004. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clinical Microbiology Reviews 17: 840-862.
7. Cleenwerck, I., Vandemeulebroecke, K., Janssens, D. and Swings, J., 2002. Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. International Journal of Systematic and Evolutionary Microbiology 52: 1551-1558.
8. Cleenwerck, I., Camu, N., Engelbeen, K., De Winter, T., Vandemeulebroecke, K., De Vos, P. and De Vuyst, L., 2007. Acetobacter ghanensis sp. nov., a novel acetic acid bacterium isolated from traditional heap fermentations of Ghanaian cocoa beans. International Journal of Systematic and Evolutionary Microbiology 57: 1647-1652.
9. Cocolin, L., Manzano, M., Cantoni, C. and Comi, G., 2001. Denaturing gradient gel electrophoresis analysis of the 16S rRNA gene V1 region to monitor dynamic changes in the bacterial population during fermentation of Italian sausages. Applied and Environmental Microbiology 67: 5113-5121.
10. Doyle, J.J. and Doyle, J.L., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
11. Ercolini, D., 2003. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. Journal of Microbiological Methods 56: 297-314.
12. Hutkins, R.W., 2006. Microbiology and technology of fermented foods. Blackwell Publishing, Ames, IO, USA.
13. Jay, J.M., Loessner, M.J. and Golden, D.A., 2005. Modern food microbiology. Springer Science and Business Media, Inc., New York, NY, USA.
14. Kiryu, T., Kiso, T., Nakano, H., Ooe, K., Kimura, T. and Murakami, H., 2009. Involvement of Acetobacter orientalis in the production of lactobionic acid in Caucasian yogurt ('Caspian Sea yogurt'). Journal of Dairy Science 92: 25-34.
15. Larcia, L.L.H, Estacio, R.C. and Dalmacio, L.M.M., 2011. Bacterial diversity in Philippine fermented mustard (burong mustasa) as revealed by 16S rRNA gene analysis. Beneficial Microbes 2: 263-271.
16. Martin-Platero, A.M., Valdiva, E., Maqueda, M., Martin-Sanchez, I. and Martinez-Bruno, M., 2008. Polyphasic approach to bacterial dynamics during the ripening of Spanish farmhouse cheese, using culture-dependent and -independent methods. Applied and Environmental Microbiology 74: 5662-5673.
17. Matijasic, B.B. and Rogelj, I., 2006. Demonstration of suitability of probiotic products. Agro Food Industry Hi-Tech 17: 38-40.
18. Meroth, C.B., Walter, J., Hertel, C., Brandt, M.J. and Hammes, W.P., 2003. Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 69: 475-482.
19. Molin, G., 2001. Probiotics in foods not containing milk or milk constituents, with special reference to Lactobacillus plantarum 299v. The American Journal of Clinical Nutrition 73 Suppl. 2: 380S-385S.
20. Moreira, J.L.S., Mota, R.M., Horta, M.F., Teixeira, S.M.R., Neumann, E., Nicoli, J.R. and Nunes, A.C., 2005. Identification to the species level of Lactobacillus isolated in probiotic prospecting studies of human, animal or food origin by 16S-23S rRNA restriction profiling. BMC Microbiology 5: 15.
21. Muyzer, G., De Waal, E.C. and Uitterlinden, A.G., 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59: 695-700.
22. Nakatsu, C.H., Torsvik, V. and Øvreås, L., 2000. Soil community analysis using DGGE of 16S rDNA polymerase chain reaction products. Soil Science Society of America 64: 1382-1388.
23. Pendersen, C., Jonsson, J., Lindberg, J.E. and Roos, S., 2004. Microbiological characterization of wet wheat distillers' grain, with focus on isolation of Lactobacilli with potential as probiotics. Applied and Environmental Microbiology 70: 1522-1527.
24. Pulido, R.P., Omar, N.B., Abriouel, H., Lopez, R.L., Canamero, M.M. and Galvez, A., 2005. Microbiological study of lactic acid fermentation of caper berries by molecular and culture-dependent methods. Applied and Environmental Microbiology 71: 7872-7879.
25. Sanchez, P., 1981. Studies on the traditional sugarcane wine (basi) production in the Philippines. Philippine Journal of Crop Science 6: 108-116.
26. Sanchez, P., 1989. Microbial interactions in Philippine fermented foods. In: Proceedings of the 5th international symposium on microbial ecology, 27 August-1 September 1989, Kyoto, Japan, pp. 6-7.
27. Sanchez, P., 2008. Philippine fermented foods: principles and technology. The University of the Philippines Press, Quezon City, Philippines, pp. 266-270.
28. Srikanjana, K., Viernstein, H., Sirithunyalug, J. and Okonogi, S., 2008. Probiotic properties of lactobacilli isolated from Thai traditional food. Scientia Pharmaceutica 76: 485-503.
29. Steinkraus, K.H., 1996. Handbook of indigenous fermented foods. 2nd ed., Marcel Dekker Inc., New York, NY, USA.
30. Tajima, K., Ohmori, H., Aminov, R.I., Kobashi, Y. and Kawashima, T., 2010. Fermented liquid feed enhances bacterial diversity in piglet intestine. Anaerobe 16: 6-11.
31. Tannock, G.W., 2004. A special fondness for Lactobacilli. Applied and Environmental Microbiology 70: 3189-3194.
32. Temmerman, R., Scheirlinck, I., Huys, G. and Swings, J., 2003. Culture-independent analysis of probiotic products by denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 69: 220-226.
33. Wiese, B.G., Strohmar, W., Rainey, F.A. and Diekmann, H., 1996. Lactobacillus panis sp. nov., from sourdough with a long fermentation period. International Journal of Systematic Bacteriology 46: 449-453.
34. Yeung, P., Sanders, M.E., Kitts, C.L., Cano, R. and Tong, P.S., 2002. Species-specific identification of commercial probiotic strains. Journal of Dairy Science 85: 1039-1051.