DNA-based methods for identification and quantification of small grain cereal mixtures and fingerprinting of varieties

Journal of Cereal Science

Volumn 41, Issue 3, 2005, Pages 213-220

  Terzi, Valeria ^a   Morcia, Caterina ^a   Gorrini, Antonio ^a   Stanca, A Michele ^a   Shewry, Peter R ^b   Faccioli, Primetta ^a  

^a Ist Sperim Per la Cerealicoltura   (Italy)

^b ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

Detection methods; Fingerprinting; Molecular markers; Real time PCR; Variety

Indexed keywords

EID: 15744361841     PISSN: 07335210     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcs.2004.08.003     Document Type: Review

References (56)

1. M.S. Akkaya, and E.B. Buyukunal-Bal Assessment of genetic variation of bread wheat varieties using microsatellite markers Euphytica 135 2003 179 184
2. R. Alary, A. Serin, M.P. Duviau, P. Joudrier, and M.F. Gautier Quantification of common wheat adulteration of durum wheat pasta using real-time quantitative polymerase chain reaction (PCR) Cereal Chemistry 79 2002 553 558
3. M. Allmann, U. Candrian, C. Höfelein, and J. Lüthy Polymerase chain reaction (PCR): a possible alternative to immunochemical methods assuring safety and quality of food Zeitschrift für Lebensmittel-Untersuchung und -Forschung 196 1993 248 251
4. M.I. Almanza-Pinzón, M. Khairallah, P.N. Fox, and M.L. Warburton Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions Euphytica 130 2003 77 86
5. AOAC official methods of analysis; supplement 1995. AOAC Official Method 991.19. (Chapter 32:13(32.31.24)).
6. M. Arlorio, J.D. Coïsson, E. Cereti, F. Travaglia, M. Papasso, and A. Martelli Polymerase chain reaction (PCR) of puroindoline b and ribosomal/puroindoline b multiplex PCR for the detection of common wheat (Triticum aestivum) in Italian pasta European Food Research and Technologies 216 2003 253 258
7. Autran, J.C., Barnwell, P., Bony, M., Landi, A., Lumley, I., Griffin, M., Paraf, A., Resmini, P., Stimson, W., Violle, P., 1994. BCR measurement and testing programme. Contract No. 5266/1/5/333/89/10-BCR-F (10).
8. G.M.M. Bredemeijer, R.J. Cooke, M.W. Ganal, R. Peeters, P. Isaac, Y. Noordijk, S. Rendell, J. Jackson, M.S. Röder, K. Wendehake, M. Dijcks, M. Amelaine, V. Wickaert, L. Bertrand, and B. Vosman Construction and testing of a microsatellite database containing more than 500 tomato varieties Theoretical and Applied Genetics 105 2002 1019 1026
9. G.J. Bryan, A. Dixon, M.D. Gale, and G. Wiseman A PCR-based method for the detection of hexaploid bread wheat adulteration of durum wheat and pasta Journal of Cereal Science 28 1998 135 145
10. A. Cavallero, A. Gianinetti, F. Finocchiaro, G. Delogu, and A.M. Stanca Tocols in hull-less and hulled genotypes grown in contrasting environments Journal of Cereal Science 39 2004 175 180
11. J. Chmelik, P. Rehulka, M. Strelcova, V. Kuban, C. Mayrhofer, and G. Allmaier Proteomic analysis of different extracts from barley grains Rostlinna Vyroba 48 2002 261 264
12. R.J. Cooke, G.M.M. Bredemeijer, M.W. Ganal, R. Peeters, P. Isaac, S. Rendell, J. Jackson, M.S. Röder, V. Korzun, K. Wendehake, T. Areshchenkova, M. Dijcks, D. Laborie, L. Bertrand, and B. Vosman Assessment of the uniformity of wheat and tomato varieties at DNA microsatellite loci Euphytica 132 2003 331 341
13. D. Cuddeford Oats for animal feed R.W. Welch The Oat Crop: Production and Utilization 1995 Chapman and Hall London 321 368
14. I. Dahinden, M. Von Büren, and J. Lüthy A quantitative competitive PCR system to detect contamination of wheat, barley or rye in gluten-free food for coeliac patients European Food Research and Technologies 212 2001 228 233
15. S. Denery-Papini, Y. Nicolas, and Y. Popineau Efficiency and limitations of immunochemical assays for the testing of gluten-free foods Journal of Cereal Science 30 1999 121 131
16. K.M. Devos, and M.D. Gale Genome relationships: the grass model in current research The Plant Cell 12 2000 637 646
17. P. Donini, J.R. Law, R.M.D. Koebner, J.C. Reeves, and R.J. Cooke Temporal trends in the diversity of UK wheat Theoretical and Applied Genetics 100 2000 912 917
18. H.J. Ellis, S. Rosen-Bronson, N. O'Reilly, and P.J. Ciclitira Measurement of gluten using a monoclonal antibody to a coeliac toxic peptide of A-gliadin Gut 43 1998 190 195
19. I. Eujayl, M.E. Sorrells, M. Baum, P. Wolters, and W. Powell Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat Theoretical and Applied Genetics 104 2002 399 407
20. P. Faccioli, N. Pecchioni, A.M. Stanca, and V. Terzi Amplified fragment length polymorphism (AFLP) markers for barley malt fingerpriting Journal of Cereal Science 29 1999 257 260
21. L.F. Gao, R.L. Jing, N.X. Huo, Y. Li, X.P. Li, R.H. Zhou, X.P. Chang, J.F. Tang, Z.Y. Ma, and J.Z. Jia One hundred and one new microsatellite loci derived from ESTs (EST-SSRs) in bread wheat Theoretical and Applied Genetics 108 2004 1392 1400
22. P.K. Gupta, and J.K. Roy Molecular markers in crop improvement: present status and future needs in India Plant Cell, Tissue and Organ Culture 70 2002 229 243
23. N. Henterich, A.A. Osman, E. Mendez, and T. Mothes Assay of gliadin by real-time immunopolymerase chain reaction Nährung/Food 47 2003 345 348
24. J.B. Holland, S.J. Helland, N. Sharopova, and D.C. Rhyne Polymorphism of PCR-based markers targeting exons, introns, promoter regions, and SSRs in maize and introns and repeat sequences in oat Genome 44 2001 1065 1076
25. T.A. Holton, J.T. Christopher, L. McClure, N. Harker, and R.J. Henry Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat Molecular Breeding 9 2002 63 71
26. Y. Hong, and A. Chuah A format for databasing and comparison of AFLP fingerprint profiles BioMed Central Bioinformatics 4 2003 7 16
27. D. Jaccoud, K. Peng, D. Feinstein, and A. Kilian Diversity array: a solid state technology for sequence information independent genotyping Nucleic Acid Research 29 2001 e25
28. G. Jander, S.R. Norris, S.D. Rounsley, D.F. Bush, I.M. Levin, and R.L. Last Arabidopsis map-based cloning in the post-genome era Plant Physiology 129 2002 440 450
29. D.D. Kasarda Celiac disease K.F. Kiple C. Ormelas The Cambridge world history of food vol. 1 2000 Cambridge University Press Cambridge 1008 1022
30. H.L. Ko, R.J. Henry, G.C. Graham, G.P. Fox, D.A. Chadbone, and I.C. Haak Identification of cereals using the polymerase chain reaction Journal of Cereal Science 19 1994 101 106
31. R.M.D. Koebner, and R.W. Summers 21st century wheat breeding: plot selection or plate selection? Trends in Biotechnology 21 2003 59 63
32. E. Köppel, M. Stadler, J. Lüthy, and P. Hübner Detection of wheat contamination in oats by polymerase chain reaction (PCR) and enzyme-linked immunosorbent assay (ELISA) Zeitschrift für Lebensmittel-Untersuchung und -Forschug A 206 1998 399 403
33. F. Leigh, V. Lea, J. Law, P. Wolters, W. Powell, and P. Donini Assessment of EST- and genomic microsatellite markers for variety discrimination and genetic diversity studies in wheat Euphytica 133 2003 359 366
34. J.Z. Li, T.G. Sjakste, M.S. Röder, and M.W. Ganal Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107 2003 1021 1027
35. M.M. Manifesto, A.R. Schlatter, H.E. Hopp, E.Y. Suárez, and J. Dubcovsky Quantitative evaluation of genetic diversity in wheat germplasm using molecular markers Crop Science 41 2001 682 690
36. D. McNeil, E.S. Lagudah, U. Hohmann, and R. Appels Amplification of DNA sequences in wheat and its relatives: the Dgas44 and R350 families of repetitive sequences Genome 37 1994 320 327
37. M. Morgante, M. Hanafey, and W. Powell Microsatellites are preferentially associated with non repetitive DNA in plant genomes Nature Genetics 30 2002 194 200
38. T. Pacey-Miller, and R. Henry Single-nucleotide polymorphism detection in plants using a single-stranded pyrosequencing protocol wth a universal biotinylated primer Analytical Biochemistry 317 2003 166 170
39. D.J. Perry Identification of Canadian durum wheat varieties using a single PCR Theoretical and Applied Genetics 109 2004 55 61
40. B. Popping The application of biotechnological methods in authenticity testing Journal of Biotechnology 98 2002 107 112
41. M. Prasad, R.K. Varshney, J.K. Roy, H.S. Balyan, and P.K. Gupta The use of microsatellites for detecting DNA polymorphism, genotype identification and genetic diversity in wheat Theoretical and Applied Genetics 100 2000 584 592
42. M.S. Röder, K. Wendehake, V. Korzun, G. Bredemeijer, D. Laborie, L. Bertrand, P. Isaac, S. Rendell, J. Jackson, R.J. Cooke, B. Vosman, and M.W. Ganal Construction and analysis of a microsatellite-based database of European wheat varieties Theoretical and Applied Genetics 106 2002 67 73
43. M. Sandberg, L. Lundberg, M. Ferm, and I. Malmheden Yman Real time PCR for the detection and discrimination of cereal contamination in gluten free foods European Food Research and Technology 217 2003 344 349
44. L. Shan, Ø. Molberg, I. Parrot, F. Hausch, F. Filiz, G.M. Gray, M. Sollid, and C. Khosla Structural basis for gluten intolerance in celiac sprue Science 297 2002 2275 2279
45. P.R. Shewry, and H. Darlington The proteins in the mature barley grains and their role in determining malting performance A. Slafer J.L. Molina-Cano R. Savin J.L. Araus I. Romagosa Barley Science. Recent Advances from Molecular Biology to Agronomy of Yield and Quality 2002 Food Products Press New York 503 521
46. P.R. Shewry, and N.G. Halford Cereal seed storage proteins: structures, properties and role in grain utilization Journal of Experimental Botany 53 2002 947 958
47. D.J. Somers, R. Kirkpatrick, M. Moniwa, and A. Walsh Mining single-nucleotide polymorphisms from hexaploid wheat ESTs Genome 46 2003 431 437
48. L. Sorell, J.A. Lopez, I. Valdes, P. Alfonso, E. Camafeita, B. Acevedo, F. Chirdo, J. Gavilondo, and E. Mendez An innovative sandwhich ELISA system based on an antibody cocktail for gluten analysis FEBS Letters 439 1998 46 50
49. S.H. Tams, E. Bauer, G. Oettler, and A.E. Melchinger Genetic diversity in European winter triticale determined with SSR markers and coancestry coefficient Theoretical and Applied Genetics 108 2004 1385 1391
50. V. Terzi, N. Pecchioni, P. Faccioli, L. Kučera, and A.M. Stanca Phyletic relationships within the genus Hordeum using PCR-based markers Genetic Resources and Crop Evolution 48 2001 447 458
51. V. Terzi, M. Malnati, M. Barbanera, A.M. Stanca, and P. Faccioli Development of analytical systems based on real-time PCR for Triticum species-specific detection and quantitation of bread wheat contamination in semolina and pasta Journal of Cereal Science 38 2003 87 94
52. V. Terzi, F. Infascelli, R. Tudisco, G. Russo, A.M. Stanca, and P. Faccioli Quantitative detection of Secale cereale by real-time PCR amplification LWT, Zeitscrift für Lebensmittel-Wissenschaft und Technologie 37 2004 239 246
53. M. Tilley PCR amplification of wheat sequences from DNA extracted during milling and baking Cereal Chemistry 81 1 2004 44 47
54. J. Tost, and V.G. Gut Genotyping single nucleotide polymorphisms by mass spectrometry Mass Spectrometry Reviews 21 2002 388 418
55. M. Von Büren, M. Stadler, and J. Lüthy Detection of wheat adulteration of spelt flour and products by PCR European Food Research and Technology 212 2001 234 239
56. P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP: a new technique for DNA fingerprinting Nucleic Acid Research 23 1995 4407 4414