Determination of fruit origin by using 26S rDNA fingerprinting of yeast communities by PCR-DGGE: Preliminary application to Physalis fruits from Egypt

Yeast

Volumn 26, Issue 10, 2009, Pages 567-573

  El Sheikha, Aly Farag ^a,b   Condur, Ana ^b   Métayer, Isabelle ^b   Le Nguyen, Doan Duy ^b,c   Loiseau, Gérard ^b   Montet, Didier ^b  

^a Minufiya Government   (Egypt)

^b CIRAD   (France)

^c CAN THO UNIVERSITY   (Viet Nam)

Author keywords

Egypt; Origin; PCR DGGE; Physalis; Traceability; Yeast communities

Indexed keywords

DNA 26S;

ARTICLE; COMMUNITY STRUCTURE; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA EXTRACTION; DNA FINGERPRINTING; EGYPT; FUNGAL COMMUNITY; FUNGAL STRAIN; FUNGUS; GEOGRAPHIC ORIGIN; NONHUMAN; PHYSALIS; PHYSALIS IXOCARPA; PHYSALIS PRUINOSA; PHYSALIS PUBESCENS; PICHIA PASTORIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; WICKERHAMOMYCES ANOMALUS;

DNA FINGERPRINTING; DNA, FUNGAL; DNA, RIBOSOMAL; EGYPT; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FRUIT; GEOGRAPHY; NUCLEIC ACID DENATURATION; PHYSALIS; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL; SENSITIVITY AND SPECIFICITY; YEASTS;

PHYSALIS; PHYSALIS PHILADELPHICA IMMACULATA; PHYSALIS PRUINOSA; PHYSALIS PUBESCENS;

EID: 70449633051     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1707     Document Type: Article

References (28)

1. Bayer Crop Science. 2006. The Bayer Crop Science Magazine for Modern Agriculture: http://www.bayercropscience.com (accessed September 2006).
2. Cocolin L, Bisson LF, Mills DA. 2000. Direct profiling of the yeast dynamics in wine fermentations. FEMS Microbiol Lett 189: 81-87. (Pubitemid 30456251)
3. El Sheikha AF. 2004. Technological, Chemical and Microbiological Studies on Some Packed Foods. MSc Thesis, Faculty of Agriculture, Minufiya University, Egypt, pp. 174.
4. El Sheikha AF, Zaki MS, Bakr AA, et al. 2008. Physico-chemical properties and biochemical composition of physalis (Physalis pubescens L.) fruits. Food 2: 124-130.
5. El Sheikha AF, Zaki MS, Bakr AA, et al. 2009. Biochemical and sensory quality of physalis (Physalis pubescens L.) juice. J Food Process Preserv. DOI: 10.1111/j.1745-4549.2009.00382.x.
6. Fleet GH. 2007. Yeasts in foods and beverages: impact on product quality and safety. Curr Opin Biotechnol 18: 170-175.
7. Fouqué A. 1972. Espèces fruitières d'Amérique tropicale. Fruits 17: 62-72.
8. Ghidini S, Ianieri A, Zanardi E, et al. 2006. Stable isotopes determination in food authentication: a review. Ann Fac Med Veter Univ Parma XXVI: 193-204.
9. Heyndrickx M, Vauterin L, Vandamme P, et al. 1996. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J Microbiol Methods 26: 247-259. (Pubitemid 26343285)
10. Kowalchuk GA, Stephen JR, De Boer W, et al. 1997. Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63: 1489-1497. (Pubitemid 27174859)
11. Kurtzman CP, Robnett CJ. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73: 331-371.
12. Le Nguyen DD, Ha H, Dijoux D, et al. 2008. Determination of fish origin by using 16S rDNA fingerprinting of bacterial communities by PCR-DGGE: an application on Pangasius fish from Vietnam. Food Control 19: 454-460. (Pubitemid 350082023)
13. Leesing R. 2005. Identification and Validation of Specific Markers for Traceability of Aquaculture Fish for Import/Export. PhD Thesis, University of Montpellier 2, France, pp. 183.
14. Masoud W, Cesar LB, Jespersen L, Jakobsen M. 2004. Yeast involved in the fermentation of Coffea arabica in East Africa determined by genotyping and by direct denaturing gradient gel electrophoresis. Yeast 21: 549-556. (Pubitemid 38702112)
15. Montet D, Le Nguyen DD, El Sheikha AF, et al. 2008. Application PCR-DGGE in determining food origin: case studies of fish and fruits. Asp Appl Biol 87: 11-22; also presented in international conference entitled: 'Traceability - Tracking and Tracing in the Food Chain', Sand Hutton, York, UK.
16. Montet D, Leesing R, Gemrot F, Loiseau G. 2004. Development of an efficient method for bacterial diversity analysis: denaturing gradient gel electrophoresis (DGGE). In Seminar on Food Safety and International Trade, Bangkok, Thailand.
17. Muyzer G, De Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700. (Pubitemid 23072343)
18. Muyzer G, Teske A, Wirsen CO, Jannasch HW. 1995. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent sample by denaturing gradient gel electrophoresis of 16S rDNA fragment. Arch Microbiol 164: 165-172.
19. Peres B, Barlet N, Loiseau G, Montet D. 2007. Review of the current methods of analytical traceability allowing determination of the origin of foodstuffs. Food Control 18: 228-235. (Pubitemid 44234455)
20. Prakitchaiwattanaa CJ, Fleet GH, Hearda GM. 2007. Application and evaluation of denaturing gradient gel electrophoresis to analyse the yeast ecology of wine grapes. FEMS Yeast Res 4: 865-877.
21. Randall RP. 2001. Plant Database. A comprehensive Database of Plant Information Department of Agriculture, Western Australia: http://www.hear.org/ gcw/html/autogend/datasources.htm (accessed December 2001).
22. Ramadan MF, Moersel JT. 2007. Impact of enzymatic treatment on chemical composition, physicochemical properties and radical scavenging activity of goldenberry (Physalis peruviana L.) juice. J Sci Food Agric 87: 452-460.
23. Ros-Chumillas M, Egea-Cortines M, Lopez-Gomez A, Weiss J. 2007. Evaluation of a rapid DNA extraction method to detect yeast cells by PCR in orange juice. Food Control 18: 33-39. (Pubitemid 43942247)
24. Sodeko OO, Izuagbe YS, Ukhun ME. 1987. Effect of different preservative treatment on the microbial population of Nigerian orange juice. Microbios 51: 133-143.
25. Tournas VH, Heeresb J, Burgessb L. 2006. Moulds and yeasts in fruit salads and fruit juices. Food Microbiol 23: 684-688.
26. USDA, GRIN, NRCS Database. 2006. Available online at: http://plants.usda.gov/java/profile?symbol=PHPU7 (accessed December 2006).
27. Van Hannen EJ, Zwart G, Van Agterveld MP, et al. 1999. Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ Microbiol 65: 795-801. (Pubitemid 29075133)
28. Watt BK, Merrill AL. 1963. Composition of Foods. Agriculture Handbook No.8. US Department of Agriculture: Washington, DC.