DNA barcoding detects market substitution in North American seafood

Food Research International

Volumn 41, Issue 8, 2008, Pages 828-837

  Wong, Eugene H K ^a   Hanner, Robert H ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Case study; DNA barcoding; Market substitution; Market survey; Mislabeled seafood; Species identification

Indexed keywords

ACCESS CONTROL; AUTHENTICATION; BAR CODES; CANNING; COST EFFECTIVENESS; DATABASE SYSTEMS; DNA; FOOD PRESERVATION; GENES; HEALTH; NUCLEIC ACIDS; ORGANIC ACIDS;

BAR CODING; CASE STUDIES; CASE STUDY; DNA BARCODING; FOOD SAFETY; GENETIC DIVERSITIES; GLOBAL MARKETPLACES; IDENTIFICATION KEYS; MARKET SUBSTITUTION; MARKET SURVEY; MISLABELED SEAFOOD; MOLECULAR DIAGNOSTICS; POW ERFUL TOOL; SEQUENCE SIMILARITY; SPECIES IDENTIFICATION;

AQUACULTURE;

EID: 49649113075     PISSN: 09639969     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foodres.2008.07.005     Document Type: Article

References (50)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., et al. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402
2. Bartlett S.E., and Davidson W.S. Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b genes. Canadian Journal of Fisheries and Aquatic Sciences 48 (1991) 309-317
3. Bartlett S.E., and Davidson W.S. FINS (forensically important nucleotide sequences): A procedure for identifying the animal origin of biological specimens. Biotechniques 12 3 (1992) 408-411
4. Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., and Wheeler D.L. GenBank. Nucleic Acids Research 35 (2007) D21-D25
5. Bridges P.D., Roberts P.J., Spooner B.M., and Panchal G. On the unreliability of published DNA sequences. New Phytologist 160 (2003) 43-48
6. Brownstein C., Lee M., and Safina C. Harnessing consumer power for ocean conservation. Conservation in Practice 4 4 (2003) 39-42
7. Costa F.O., and Carvalho G.R. The barcode of life initiative: synopsis and prospective societal impacts of DNA barcoding of fish. Genomics, Society and Policy 3 (2007) 29-40
8. Dasmahapatra K.K., and Mallet J. DNA barcodes: Recent successes and future prospects. Heredity 97 (2006) 254-255
9. Dawnay N., Ogden R., McEwing R., Carvalho G.R., and Thorpe R.S. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Science International 173 1 (2007) 1-6
10. Ekrem T., Willassen E., and Stur E. A comprehensive DNA sequence library is essential for identification with DNA barcodes. Molecular Phylogenetics and Evolution 43 (2007) 530-542
11. Forrest A., and Carnegie P. Identification of gourmet meat using FINS (forensically informative nucleotide sequencing). Biotechniques 17 1 (1994) 24-26
12. Forster P. To err is human. Annals of Human Genetics 67 (2003) 2-4
13. Froese, R, & Pauly, D. (Eds.). (2008). FishBase. World Wide Web electronic publication. (, version 04/2008).
14. Gerson H., Cudmore B., Mandrak N.E., Coote L.D., Farr K., and Baillergeon G. Monitoring international wildlife trade with coded species data. Conservation Biology 22 1 (2008) 4-7
15. Hajibabaei M., DeWaard J.R., Ivanova N.V., Ratnasingham S., Dooh R.T., Kirk S.L., et al. Critical factors for assembling high volume of DNA barcodes. Philosophical Transactions of the Royal Society of London B 360 (2005) 1959-1967
16. Hajibabaei M., Smith M.A., Janzen D.H., Rodriguez J.J., Whitfield J.B., and Hebert P.D.N. A minimalist barcode can identify a specimen whose DNA is degraded. Molecular Ecology Notes 6 (2006) 959-964
17. Harris D.J. Can you bank on GenBank?. TRENDS in Ecology and Evolution 18 7 (2003) 317-319
18. Hebert P.D.N., Cywinska A., Ball S.L., and deWaard J.R. Biological identification through DNA barcodes. Proceedings of the Royal Society of London B 270 (2003) 313-321
19. Hebert P.D.N., Ratnasingham S., and DeWaard J.R. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London B 270 (2003) S96-S99
20. Hebert P.D.N., Stoeckle M.Y., Zemlak T.S., and Francis C.M. Identification of birds through DNA barcodes. PLoS Biology 2 10 (2004) e312
21. Hilborn R., Walters C.J., and Ludwig D. Sustainable exploitation of renewable resources. Annual Review of Ecology and Systematics 26 (1995) 45-67
22. Hofmann K. Fundamental problems in identifying the animal species of muscle meat using electrophoretic methods. Fleischwirtschaft 67 (1987) 820-826
23. Hsieh H.-S., Chai T.-j., and Hwang D.-F. Using the PCR-RFLP method to identify the species of different processed products of billfish meats. Food Control 18 (2007) 369-374
24. Hubert N., Hanner R., Holm E., Mandrak N.E., Taylor E., Burridge M., et al. Identifying Canadian freshwater fishes through DNA barcodes. PLoS One 3 6 (2008) e2490
25. Ivanova N.V., DeWaard J.R., and Hebert P.D.N. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes 6 (2006) 998-1002
26. Ivanova N., Zemlak T.S., Hanner R.H., and Hebert P.D.N. Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes 6 (2007) 998-1002
27. Lefebure T., Douady C.J., Gouy M., and Gibiert J. Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation. Molecular Phylogenetics and Evolution 40 (2006) 435-447
28. Lockley A., and Bardsley R. DNA-based methods for food authentication. Trends in Food Science and Technology 11 (2000) 67-77
29. Marko P.B., Lee S.C., Rice A.M., Gramling J.M., Fitzhenry T.M., McAlister J.S., et al. Mislabelling of a depleted reef fish. Nature 430 (2004) 309-310
30. Matsunaga T., Shibata K., Yamada J., Shinmura Y., and Chikuni K. Identification of meat species based on the difference of the 18S ribosomal RNA genes. Journal of the Japanese Society for Food Science and Technology 45 (1998) 719-723
31. Messing J. New M13 vectors for cloning. Methods in Enzymology 101 (1983) 20-78
32. Nelson L.A., Wallman J.F., and Dowton M. Using COI barcodes to identify forensically and medically important blowflies. Medical and Veterinary Entomology 21 (2007) 44-52
33. Nilsson R.H., Ryberg M., Kristiansson E., Abarenkov K., Larsson K.-H., and Köljalg U. Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective. PloS One 1 (2006) e59
34. Patterson R.L.S., and Jones S.J. Review of current techniques for the verification of the species origin of meat. The Analyst 115 (1990) 501-506
35. Por F.D. A "taxonomic affidavit": Why is it needed?. Integrative Zoology 2 (2007) 57-59
36. Ratnasingham S., and Hebert P.D.N. BOLD: The barcode of life data system www.barcodinglife.org. Molecular Ecology Notes 7 (2007) 355-364
37. Rehbein H. Electrophoretic techniques for species identification of fishery products. Zeitschrift für Lebensmittel-Untersuchung und -Forschung 191 (1990) 1-10
38. Rock J., Costa F.O., Walker D.I., North A.W., Hutchinson W.F., and Carvalho G.R. DNA barcodes of fish of the Antarctic Scotia Sea indicate priority groups for taxonomic and systematics focus. Antarctic Science 20 (2008) 253-262
39. Ross H.A., and Murugan S. Using phylogenetic analyses and reference datasets to validate the species identities of cetacean sequences in GenBank. Molecular Phylogenetics and Evolution 40 (2006) 866-871
40. Smith P.J., McVeagh S.M., and Steinke D. DNA barcoding for the identification of smoked fish products. Journal of Fish Biology 72 (2008) 1-8
41. Spies I.B., Gaichas S., Stevenson D.E., Orr J.W., and Canino F.M. DNA-based identification of Alaska skates (Amblyraja, Bathyraja and Raja:Rajidae) using cytochrome c oxidase subunit I (coI) variation. Journal of Fish Biology 69 Suppl. B (2006) 283-292
42. Swart K., and Wilks C. An immunodiffusion method for the identification of the species of origin of meat samples. Australian Veterinary Journal 59 1 (1982) 21-22
43. Unseld M., Beyermann B., Brandt P., and Hiesel R. Identification of the species origin of highly processed meat products by mitochondrial DNA sequences. PCR Methods and Applications 4 4 (1995) 241-243
44. Van Voorhees, D., & Pritchard, E. S. (2007). Fisheries of the United States 2006. In: N. M. F. Service (Ed.). Berlin: Elsevier.
45. Ward R.D., Holmes B.H., White W.T., and Last P.R. DNA barcoding Australasian chondrichthyans: Results and potential uses in conservation. Marine and Freshwater Research 59 (2008) 57-71
46. Ward R.D., Zemlak T.S., Innes B.H., Last P.R., and Hebert P.D.N. DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society of London B360 (2005) 1847-1857
47. Waugh J. DNA barcoding in animal species: Progress, potential and pitfalls. BioEssays 29 2 (2007) 188-197
48. Worm B., Barbier E.B., Beaumont N., Duffy J.E., Folke C., Halpern B.S., et al. Impacts of biodiversity loss on ocean ecosystem services. Science 314 (2006) 787-790
49. Yancy H.F., Zemlak T.S., Mason J.A., Washington J.D., Tenge B.J., Nguyen N.-L.T., et al. Potential use of DNA barcodes in regulatory science: Applications of the regulatory fish encyclopedia. Journal of Food Protection 71 1 (2007) 210-217
50. Yao Y.-G., Bravi C.M., and Bandelt H.-J. A call for mtDNA data quality control in forensic science. Forensic Science International 141 (2004) 1-6