메뉴 건너뛰기




Volumn 57, Issue 18, 2009, Pages 8379-8385

DNA barcoding of commercially important salmon and trout species (oncorhynchus and salmo) from north america

Author keywords

Coi; Dna barcoding; Fish bol; Mini barcode; Salmonlds; Species identification

Indexed keywords

DNA; MITOCHONDRIAL DNA;

EID: 70349316535     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf901618z     Document Type: Article
Times cited : (91)

References (38)
  • 5
    • 59149092641 scopus 로고    scopus 로고
    • The campaign to DNA barcode all fishes, FISH-BOL
    • Ward, R. D.; Hanner, R.; Hebert, P. D. N. The campaign to DNA barcode all fishes, FISH-BOL. J. Fish Biol. 2009, 74, 329-356.
    • (2009) J. Fish Biol. , vol.74 , pp. 329-356
    • Ward, R.D.1    Hanner, R.2    Hebert, P.D.N.3
  • 7
    • 11944267538 scopus 로고
    • Introgression in fishes: Significance for paleontology, cladistics, and evolutionary rates
    • Smith, G. R. Introgression in fishes: Significance for paleontology, cladistics, and evolutionary rates. Syst. Biol. 1992, 41, 41-57.
    • (1992) Syst. Biol. , vol.41 , pp. 41-57
    • Smith, G.R.1
  • 10
    • 0004142955 scopus 로고
    • American Fisheries Society, monograph 6. American Fisheries Society: Bethesda, MD
    • Behnke, R. J. Native Trout of Western North America. American Fisheries Society, monograph 6. American Fisheries Society: Bethesda, MD, 1992.
    • (1992) Native Trout of Western North America
    • Behnke, R.J.1
  • 11
    • 33751313616 scopus 로고    scopus 로고
    • An inexpensive, automation-friendly protocol for recovering high-quality DNA
    • Ivanova, N. V.; Dewaard, J. R.; Hebert, P. D. N. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol. Ecol. Notes 2006, 6, 998-1002.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 998-1002
    • Ivanova, N.V.1    Dewaard, J.R.2    Hebert, P.D.N.3
  • 12
    • 48849115497 scopus 로고    scopus 로고
    • Semi-automated, membrane-based protocol for DNA isolation from plants
    • Ivanova, N. V.; Fazekas, A. J.; Hebert, P. D. N. Semi-automated, membrane-based protocol for DNA isolation from plants. Plant Mol. Biol. Rep. 2008, 26, 186-198.
    • (2008) Plant Mol. Biol. Rep. , vol.26 , pp. 186-198
    • Ivanova, N.V.1    Fazekas, A.J.2    Hebert, P.D.N.3
  • 14
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
    • DOI 10.1093/bib/bbn017, Special Issue: Critical Technologies for Bioinformatics
    • (14) Kumar, S.; Dudley, J.; Nei, M.; Tamura, K. MEGA: A biologistcentric software for evolutionary analysis of DNA and protein sequences. Briefings Bioinf. 2008, 9, 299-306. (Pubitemid 351890826)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 15
    • 34248149943 scopus 로고    scopus 로고
    • BOLD: The barcode of life data system
    • Ratnasingham, S.; Hebert, P. D. N. BOLD: The barcode of life data system (www.barcodinglife.org). Mol. Ecol. Notes 2007, 7, 355-364.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 355-364
    • Ratnasingham, S.1    Hebert, P.D.N.2
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • (18) Kimura, M. A simple method of estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 70, 111-120. (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 19
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids. Symp. Ser. 1999, 41, 95-98.
    • (1999) Nucleic Acids. Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N.; Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 21
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • (21) Tamura, K.; Dudley, J.; Nei, M.; Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24, 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 22
    • 0027831743 scopus 로고
    • Low levels of intraspecific variation in the mitochondrial DNA of chum salmon (Oncorhynchus keta)
    • Park, L. K.; Brainard, M. A.; Dightman, D. A.; Winans, G A. Low levels of intraspecific variation in the mitochondrial DNA of chum salmon (Oncorhynchus keta). Mol. Mar. Biol. Biotechnol. 1993, 2, 362-370.
    • (1993) Mol. Mar. Biol. Biotechnol. , vol.2 , pp. 362-370
    • Park, L.K.1    Brainard, M.A.2    Dightman, D.A.3    Winans, G.A.4
  • 23
    • 0035213813 scopus 로고    scopus 로고
    • Phylogeographic analysis of mitochondrial DNA variation in Alaskan coho salmon, oncorhynchus kisutch
    • Gharrett, A. J.; Gray, A. K.; Brykov, V. Phylogeographic analysis of mitochondrial DNA variation in Alaskan coho salmon, Oncorhynchus kisutch. Fish. Bull. 2001, 99, 528-544.
    • (2001) Fish. Bull. , vol.99 , pp. 528-544
    • Gharrett, A.J.1    Gray, A.K.2    Brykov, V.3
  • 25
    • 84873135673 scopus 로고    scopus 로고
    • FY2006 Final Report: Genetic investigations of Bonneville cutthroat trout in the bear river drainage, Idaho: Distribution of mitochondrial DNA diversity and rainbow trout hybridization and introgression
    • Idaho Department of Fish and Game
    • Campbell, M.; Kozfkay, C. C.; Boone, A.; Teuscher, D. FY2006 Final Report: Genetic investigations of Bonneville cutthroat trout in the bear river drainage, Idaho: Distribution of mitochondrial DNA diversity and rainbow trout hybridization and introgression. IDFG Report Number 07-36, Idaho Department of Fish and Game, 2007; pp 1-28.
    • (2007) IDFG Report Number 07-36 , pp. 1-28
    • Campbell, M.1    Kozfkay, C.C.2    Boone, A.3    Teuscher, D.4
  • 27
    • 35848966343 scopus 로고    scopus 로고
    • An analysis of nucleotide and amino acid variability in the barcode region of cytochrome c oxidase i (coxl) in fishes
    • Ward, R. D.; Holmes, B. H. An analysis of nucleotide and amino acid variability in the barcode region of cytochrome c oxidase I (coxl) in fishes. Mol. Ecol. Notes 2007, 7, 899-907.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 899-907
    • Ward, R.D.1    Holmes, B.H.2
  • 28
    • 0033812731 scopus 로고    scopus 로고
    • Mitochondrial cytochrome b sequence variation in Korean salmonids
    • Park, J. Y.; Lee, H. J.; Kim, W. J.; Lee, J. H.; Min, K. S. Mitochondrial cytochrome b sequence variation in Korean salmonids. J. Fish Biol. 2000, 56, 1145-1154.
    • (2000) J. Fish Biol. , vol.56 , pp. 1145-1154
    • Park, J.Y.1    Lee, H.J.2    Kim, W.J.3    Lee, J.H.4    Min, K.S.5
  • 29
    • 0000564170 scopus 로고
    • Mitochondrial DNA analysis of Pacific Northwest populations of oncorhynchus tshawytscha
    • Wilson, G. M.; Thomas, W. K.; Beckenbach, A. T. Mitochondrial DNA analysis of Pacific Northwest populations of Oncorhynchus tshawytscha. Can. J. Fish. Aquat. Sci. 1987, 44, 1301-1305.
    • (1987) Can. J. Fish. Aquat. Sci. , vol.44 , pp. 1301-1305
    • Wilson, G.M.1    Thomas, W.K.2    Beckenbach, A.T.3
  • 30
    • 0003170649 scopus 로고
    • Intra- And interspecific mitochondrial DNA sequence divergence in Salmo: Rainbow, steelhead, and cutthroat trouts
    • Wilson, G. M.; Thomas, W. K.; Beckenbach, A. T. Intra- and interspecific mitochondrial DNA sequence divergence in Salmo: Rainbow, steelhead, and cutthroat trouts. Can. J. Zool. 1985, 63, 2088-2094.
    • (1985) Can. J. Zool. , vol.63 , pp. 2088-2094
    • Wilson, G.M.1    Thomas, W.K.2    Beckenbach, A.T.3
  • 31
    • 0000187693 scopus 로고
    • Mitochondrial DNA variation in chinook and chum salmon detected by restriction enzyme analysis of PCR products
    • Cronin, M. A.; Spearman, W. J.; Wilmot, R. I.; Patton, J. C.; Bickham, J. W. Mitochondrial DNA variation in chinook and chum salmon detected by restriction enzyme analysis of PCR products. Can. J. Fish. Aquat. Sci. 1993, 50, 708-715.
    • (1993) Can. J. Fish. Aquat. Sci. , vol.50 , pp. 708-715
    • Cronin, M.A.1    Spearman, W.J.2    Wilmot, R.I.3    Patton, J.C.4    Bickham, J.W.5
  • 32
    • 0024726084 scopus 로고
    • Variation in salmonid mitochondrial DNA: Evolutionary constraints and mechanisms of substitution
    • Thomas, W. K.; Beckenbach, A. T. Variation in salmonid mitochondrial DNA: Evolutionary constraints and mechanisms of substitution. J. Mol. Evol. 1989, 29, 233-245.
    • (1989) J. Mol. Evol. , vol.29 , pp. 233-245
    • Thomas, W.K.1    Beckenbach, A.T.2
  • 33
    • 38149143678 scopus 로고
    • A salmonid phylogeny inferred from mitochondrial cytochrome b gene sequences
    • McVeigh, H. P.; Davidson, W. S. A salmonid phylogeny inferred from mitochondrial cytochrome b gene sequences. J. Fish Biol. 1991, 39 (supplement A), 277-282.
    • (1991) J. Fish Biol. , vol.39 , Issue.A , pp. 277-282
    • McVeigh, H.P.1    Davidson, W.S.2
  • 36
    • 49649113075 scopus 로고    scopus 로고
    • DNA barcoding detects market substitution in North American seafood
    • Wong, E. H. K.; Hanner, R. H. DNA barcoding detects market substitution in North American seafood. Food Res. Int. 2008, 41, 828-837.
    • (2008) Food Res. Int. , vol.41 , pp. 828-837
    • Wong, E.H.K.1    Hanner, R.H.2
  • 37
    • 38849129393 scopus 로고    scopus 로고
    • DNA barcoding for the identification of smoked fish products
    • DOI 10.1111/j.1095-8649.2007.01745.x
    • (37) Smith, P. J.; McVeagh, S. M.; Steinke, D. DNA barcoding for the identification of smoked fish products. J. Fish Biol. 2008, 72, 464-471. (Pubitemid 351190165)
    • (2008) Journal of Fish Biology , vol.72 , Issue.2 , pp. 464-471
    • Smith, P.J.1    McVeagh, S.M.2    Steinke, D.3
  • 38
    • 63449140427 scopus 로고    scopus 로고
    • Application of DNA-based methods to identify fish and seafood substitution on the commercial market
    • Rasmussen, R. S.; Morrissey, M. T. Application of DNA-based methods to identify fish and seafood substitution on the commercial market. Compr. Rev. Food Sci. Food Saf 2009, 5, 118-154.
    • (2009) Compr. Rev. Food Sci. Food Saf , vol.5 , pp. 118-154
    • Rasmussen, R.S.1    Morrissey, M.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.