-
1
-
-
0027446505
-
The P450 superfamily: Update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature
-
Nelson, D. R.; Kamataki, T.; Waxman, D. J.; Guengerich, F. P.; Estabrook, R. W.; Feyereisen, R.; Gonzalez, F. J.; Coon, M. J.; Gunsalus, I. C.; Gotoh, O.; Okuda, K.; Nebert, D. W. The P450 superfamily: update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature. DNA Cell Biol. 1993, 12, 1-51.
-
(1993)
DNA Cell Biol.
, vol.12
, pp. 1-51
-
-
Nelson, D.R.1
Kamataki, T.2
Waxman, D.J.3
Guengerich, F.P.4
Estabrook, R.W.5
Feyereisen, R.6
Gonzalez, F.J.7
Coon, M.J.8
Gunsalus, I.C.9
Gotoh, O.10
Okuda, K.11
Nebert, D.W.12
-
2
-
-
9044254525
-
P450 superfamily: Update on new sequences, gene mapping, accession numbers and nomenclature
-
Nelson, D. R.; Koymans, L.; Kamataki, T.; Stegeman, J. J.; Feyereisen, R.; Waxman, D. J.; Waterman, M. R.; Gotoh, O.; Coon, M. J.; Estabrook, R. W.; Gunsalus, I. C.; Nebert, D. W. P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature. Pharmacogenetics 1996, 6, 1-42.
-
(1996)
Pharmacogenetics
, vol.6
, pp. 1-42
-
-
Nelson, D.R.1
Koymans, L.2
Kamataki, T.3
Stegeman, J.J.4
Feyereisen, R.5
Waxman, D.J.6
Waterman, M.R.7
Gotoh, O.8
Coon, M.J.9
Estabrook, R.W.10
Gunsalus, I.C.11
Nebert, D.W.12
-
3
-
-
10644250393
-
-
http://drnelson.utmem.edu/human.genecount.html
-
-
-
-
4
-
-
0026459382
-
Speculations on the substrate structure-activity relationship (SSAR) of cytochrome P450 enzymes
-
Smith, D. A.; Jones, B. C. Speculations on the substrate structure-activity relationship (SSAR) of cytochrome P450 enzymes. Biochem. Pharmacol. 1992, 44, 2089-2098.
-
(1992)
Biochem. Pharmacol.
, vol.44
, pp. 2089-2098
-
-
Smith, D.A.1
Jones, B.C.2
-
5
-
-
10644243127
-
Polymorphic oxidation of debrisoquine in man
-
Mahgoub, A.; Idle, J. R.; Dring, L. G.; Lancaster, R.; Smith, R. L. Polymorphic oxidation of debrisoquine in man. Lancet 1977 11, 594-586.
-
(1977)
Lancet
, vol.11
, pp. 586-594
-
-
Mahgoub, A.1
Idle, J.R.2
Dring, L.G.3
Lancaster, R.4
Smith, R.L.5
-
6
-
-
0028997955
-
"It's the genes, stupid". Molecular bases and clinical consequences of genetic cytochrome P450 2D6 polymorphism
-
Kroemer, H. K.; Eichelbaum, M. "It's the genes, stupid". Molecular bases and clinical consequences of genetic cytochrome P450 2D6 polymorphism. Life Sci. 1995, 56, 2285-2298.
-
(1995)
Life Sci.
, vol.56
, pp. 2285-2298
-
-
Kroemer, H.K.1
Eichelbaum, M.2
-
7
-
-
0029658591
-
The role of the CYP2C9-Leu359 allelic variant in the tolbutamide polymorphism
-
Sullivan-Klose, T. H.; Ghanayem, B. I.; Bell, D. A.; Zhang, Z. Y.; Kaminsky, L. S.; Shenfield, G. M.; Miners, J. O.; Birkett, D. J.; Goldstein, J. A. The role of the CYP2C9-Leu359 allelic variant in the tolbutamide polymorphism. Pharmacogenetics 1996, 6, 341-349.
-
(1996)
Pharmacogenetics
, vol.6
, pp. 341-349
-
-
Sullivan-Klose, T.H.1
Ghanayem, B.I.2
Bell, D.A.3
Zhang, Z.Y.4
Kaminsky, L.S.5
Shenfield, G.M.6
Miners, J.O.7
Birkett, D.J.8
Goldstein, J.A.9
-
8
-
-
0033608466
-
Association of polymorphisms in the cytochrome P450 CYP2C9 with warfarin dose requirement and risk of bleeding complications
-
Aithal, G. P.; Day, C. P.; Kesteven, P. J.; Daly, A. K. Association of polymorphisms in the cytochrome P450 CYP2C9 with warfarin dose requirement and risk of bleeding complications. Lancet 1999 353, 717-719.
-
(1999)
Lancet
, vol.353
, pp. 717-719
-
-
Aithal, G.P.1
Day, C.P.2
Kesteven, P.J.3
Daly, A.K.4
-
9
-
-
0032891790
-
Pharmacokinetics of chlorpheniramine, phenytoin, glipizide and nifedipine in an individual homozygous for the CYP2C9*3 allele
-
Kidd, R. S.; Straughn, A. B.; Meyer, M. C.; Blaisdell, J.; Goldstein, J. A.; Dalton, J. T. Pharmacokinetics of chlorpheniramine, phenytoin, glipizide and nifedipine in an individual homozygous for the CYP2C9*3 allele. Pharmacogenetics 1999, 9, 71-80,
-
(1999)
Pharmacogenetics
, vol.9
, pp. 71-80
-
-
Kidd, R.S.1
Straughn, A.B.2
Meyer, M.C.3
Blaisdell, J.4
Goldstein, J.A.5
Dalton, J.T.6
-
10
-
-
0035217171
-
Identification of a null allele of CYP2C9 in an African-American exhibiting toxicity to phenytoin
-
Kidd, R. S.; Curry, T. B.; Gallagher, S.; Edeki, T.; Blaisdell, J.; Goldstein, J. A. Identification of a null allele of CYP2C9 in an African-American exhibiting toxicity to phenytoin. Pharmacogenetics 2001, 11, 803-808.
-
(2001)
Pharmacogenetics
, vol.11
, pp. 803-808
-
-
Kidd, R.S.1
Curry, T.B.2
Gallagher, S.3
Edeki, T.4
Blaisdell, J.5
Goldstein, J.A.6
-
11
-
-
0034872136
-
Pharmacogenetics of warfarin elimination and its clinical implications
-
Takahashi, H.; Echizen, H. Pharmacogenetics of warfarin elimination and its clinical implications. Clin. Pharmacokinet. 2001, 40, 587-603.
-
(2001)
Clin. Pharmacokinet.
, vol.40
, pp. 587-603
-
-
Takahashi, H.1
Echizen, H.2
-
12
-
-
0026750647
-
The human hepatic cytochromes P450 involved in drug metabolism
-
Wrighton, S. A.; Stevens, J. C. The human hepatic cytochromes P450 involved in drug metabolism. Crit. Rev. Toxicol. 1992, 22, 1-21.
-
(1992)
Crit. Rev. Toxicol.
, vol.22
, pp. 1-21
-
-
Wrighton, S.A.1
Stevens, J.C.2
-
13
-
-
0034271334
-
3D quantitative structure activity relationships with CoRSA. Comparative receptor surface analysis. Application to calcium channel agonists
-
Ivanciuc, O.; Ivanciuc, T.; Cabrol-Bass, D. 3D quantitative structure activity relationships with CoRSA. Comparative receptor surface analysis. Application to calcium channel agonists. Analusis 2000 28, 637-642.
-
(2000)
Analusis
, vol.28
, pp. 637-642
-
-
Ivanciuc, O.1
Ivanciuc, T.2
Cabrol-Bass, D.3
-
14
-
-
0023751431
-
Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
-
Cramer, R. D.; Patterson, D. E.; Bunce, J. D. Comparative Molecular Field Analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110 5959-5967.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 5959-5967
-
-
Cramer, R.D.1
Patterson, D.E.2
Bunce, J.D.3
-
15
-
-
10644231441
-
2"
-
Accelrys Inc
-
2." 2002.
-
(2002)
-
-
-
17
-
-
10644225719
-
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Tsar, version 3.0
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Tsar, 2000, version 3.0.
-
(2000)
-
-
-
18
-
-
10644269016
-
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Cerius2, version 4.8
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Cerius2, 2003, version 4.8.
-
(2003)
-
-
-
19
-
-
10644240475
-
-
Milano Chemometrics and QSAR Research Group, Department of Environmental Sciences, Milano, Italy, Dragon, version 2.1
-
Milano Chemometrics and QSAR Research Group, Department of Environmental Sciences, Milano, Italy, Dragon, 2002, version 2.1.
-
(2002)
-
-
-
20
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia, C.; Lesk, A. M. The relation between the divergence of sequence and structure in proteins. EMBO J. 1986, 5, 823-826.
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
21
-
-
0034738973
-
Microsomal cytochrome P450 2C5: Comparison to microbial P450s and unique features
-
Williams, P. A.; Cosme, J.; Sridhar, V.; Johnson, E. F.; McRee, D. E. Microsomal cytochrome P450 2C5: comparison to microbial P450s and unique features. J. Inorg. Biochem. 2000, 81, 183-190.
-
(2000)
J. Inorg. Biochem.
, vol.81
, pp. 183-190
-
-
Williams, P.A.1
Cosme, J.2
Sridhar, V.3
Johnson, E.F.4
McRee, D.E.5
-
22
-
-
0037672866
-
Structure of a substrate complex of mammalian cytochrome P450 2C5 at 2.3Å resolution: Evidence for multiple substrate binding modes
-
Wester, M. R.; Johnson, E. F.; Marques-Soares, C.; Dansette, P. M.; Mansuy, D.; Stout, C. D. Structure of a substrate complex of mammalian cytochrome P450 2C5 at 2.3Å resolution: evidence for multiple substrate binding modes. Biochemistry 2003, 42 6370-6379.
-
(2003)
Biochemistry
, vol.42
, pp. 6370-6379
-
-
Wester, M.R.1
Johnson, E.F.2
Marques-Soares, C.3
Dansette, P.M.4
Mansuy, D.5
Stout, C.D.6
-
23
-
-
0042573727
-
Structure of mammalian cytochrome P450 2C5 complexed with diclofenac at 2.1Å resolution: Evidence for an induced fit model of substrate binding
-
Wester, M. R.; Johnson, E. F.; Marques-Soares, C.; Dijols, S.; Dansette, P. M.; Mansuy, D.; Stout, C. D. Structure of mammalian cytochrome P450 2C5 complexed with diclofenac at 2.1Å resolution: evidence for an induced fit model of substrate binding. Biochemistry 2003, 42, 9335-9345.
-
(2003)
Biochemistry
, vol.42
, pp. 9335-9345
-
-
Wester, M.R.1
Johnson, E.F.2
Marques-Soares, C.3
Dijols, S.4
Dansette, P.M.5
Mansuy, D.6
Stout, C.D.7
-
24
-
-
0042265520
-
Crystal structure of human cytochrome P450 2C9 with bound warfarin
-
Williams, P. A.; Cosme, J.; Ward, A.; Angrove, H. C.; Vinkovic, D. M.; Jhoti, H. Crystal structure of human cytochrome P450 2C9 with bound warfarin. Nature 2003, 424, 464-468.
-
(2003)
Nature
, vol.424
, pp. 464-468
-
-
Williams, P.A.1
Cosme, J.2
Ward, A.3
Angrove, H.C.4
Vinkovic, D.M.5
Jhoti, H.6
-
25
-
-
10644260064
-
Structural studies of substrate binding to CYP2C drug metabolising P450s
-
Ed.) Prague, Czech Republic
-
Johnson, E. F. Structural studies of substrate binding to CYP2C drug metabolising P450s. In Proceedings of the 13th International conference on cytochromes P450.; 2003 Ed.) Prague, Czech Republic.
-
(2003)
Proceedings of the 13th International Conference on Cytochromes
, pp. 450
-
-
Johnson, E.F.1
-
26
-
-
4143143372
-
The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-Å resolution
-
Wester, M. R.; Yano, J. K.; Schoch, G. A.; Yang, C.; Griffin, K. J.; Stout, C. D.; Johnson, E. F. The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-Å resolution. J. Biol. Chem. 2004, 279, 35630-35637.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 35630-35637
-
-
Wester, M.R.1
Yano, J.K.2
Schoch, G.A.3
Yang, C.4
Griffin, K.J.5
Stout, C.D.6
Johnson, E.F.7
-
27
-
-
0036842295
-
Opposites attract, or do they ? Rethinking the P450 2D6 pharmacophore model
-
Gillam, E. M. J. Opposites attract, or do they ? Rethinking the P450 2D6 pharmacophore model. Trends Pharm. Sci. 2002, 23, 501.
-
(2002)
Trends Pharm. Sci.
, vol.23
, pp. 501
-
-
Gillam, E.M.J.1
-
28
-
-
0030963409
-
1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine as a substrate of cytochrome P450 2D6: Allosteric effects of NADPH-cytochrome P450 reductase
-
Modi, S.; Gilham, D. E.; Sutcliffe, M. J.; Lian, L.-Y.; Primrose, W. U.; Wolf, C. R.; Roberts, G. C. K. 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine as a substrate of cytochrome P450 2D6: allosteric effects of NADPH-cytochrome P450 reductase. Biochemistry 1997, 36, 4461-4470.
-
(1997)
Biochemistry
, vol.36
, pp. 4461-4470
-
-
Modi, S.1
Gilham, D.E.2
Sutcliffe, M.J.3
Lian, L.-Y.4
Primrose, W.U.5
Wolf, C.R.6
Roberts, G.C.K.7
-
29
-
-
10644239621
-
-
Tripos Inc., 1699 South Hanley Rd., St. Louis, Missouri 63144 USA, SYBYL® 6.9, Version 6.9
-
Tripos Inc., 1699 South Hanley Rd., St. Louis, Missouri 63144 USA, SYBYL® 6.9, 2003, Version 6.9.
-
(2003)
-
-
-
30
-
-
10644295230
-
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Catalyst, version 4.7
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Catalyst, 2003, version 4.7.
-
(2003)
-
-
-
31
-
-
10644297785
-
-
Chemical Computing Group Inc., 1010 Sherbrooke Street West, Suite 910, Montreal, Canada H3A 2R7, MOE (The Molecular Operating Environment), Version 2002.03
-
Chemical Computing Group Inc., 1010 Sherbrooke Street West, Suite 910, Montreal, Canada H3A 2R7, MOE (The Molecular Operating Environment), 2002, Version 2002.03.
-
(2002)
-
-
-
32
-
-
45249127902
-
Principal component analysis and partial least squares regression
-
Glen, W. G.; Dunn III, W. J.; Scott, D. R. Principal component analysis and partial least squares regression. Tetrahedron Computer Methodology 1989, 2, 349-376.
-
(1989)
Tetrahedron Computer Methodology
, vol.2
, pp. 349-376
-
-
Glen, W.G.1
Dunn III, W.J.2
Scott, D.R.3
-
34
-
-
0034460173
-
Progress in predicting human ADME parameters in silico
-
Ekins, S.; Waller, C. L.; Swaan, P. W.; Cruciani, G.; Wrighton, S. A.; Wikel, J. H. Progress in predicting human ADME parameters in silico. J. Pharmacol. Toxicol. Methods 2001, 44, 251-272.
-
(2001)
J. Pharmacol. Toxicol. Methods
, vol.44
, pp. 251-272
-
-
Ekins, S.1
Waller, C.L.2
Swaan, P.W.3
Cruciani, G.4
Wrighton, S.A.5
Wikel, J.H.6
-
35
-
-
0027615743
-
MEPSIM: A computational package for analysis and comparison of molecular eletrostatic potentials
-
Sanz, F.; Manaut, F.; Rodríguez, J.; Lozoya, E.; López-de-Briñaz, E. MEPSIM: A computational package for analysis and comparison of molecular eletrostatic potentials. J. Comput.-Aided Mol. Des. 1993, 7, 337-347.
-
(1993)
J. Comput.-Aided Mol. Des.
, vol.7
, pp. 337-347
-
-
Sanz, F.1
Manaut, F.2
Rodríguez, J.3
Lozoya, E.4
López-de-Briñaz, E.5
-
36
-
-
0029000922
-
Prediction of drug binding affinities by comparative binding energy analysis
-
Ortiz, A. R.; Pisabarro, M. T.; Gago, F.; Wade, R. C. Prediction of drug binding affinities by comparative binding energy analysis. J. Med. Chem. 1995, 38, 2681-2691.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2681-2691
-
-
Ortiz, A.R.1
Pisabarro, M.T.2
Gago, F.3
Wade, R.C.4
-
37
-
-
0021871375
-
A computational procedure for determining energetically favourable binding sites on biologically important macromolecules
-
Goodford, P. J. A computational procedure for determining energetically favourable binding sites on biologically important macromolecules. J. Med. Chem. 1985, 28, 849-857.
-
(1985)
J. Med. Chem.
, vol.28
, pp. 849-857
-
-
Goodford, P.J.1
-
38
-
-
10644296747
-
-
Molecular Discovery Ltd., 20a Berkley Street, Mayfair, London, U.K., GRID, v. 19
-
Molecular Discovery Ltd., 20a Berkley Street, Mayfair, London, U.K., GRID, 2001, v. 19.
-
(2001)
-
-
-
39
-
-
0034710718
-
Grid Independent Descriptors (GRIND). A novel class of alignment-independent three-dimensional molecular descriptors
-
Pastor, M.; Cruciani, G.; McLay, I.; Pickett, S.; Clementi, S. Grid Independent Descriptors (GRIND). A novel class of alignment-independent three-dimensional molecular descriptors. J. Med. Chem. 2000, 43, 3233-3243.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 3233-3243
-
-
Pastor, M.1
Cruciani, G.2
McLay, I.3
Pickett, S.4
Clementi, S.5
-
40
-
-
10644283502
-
Handling information from 3D grid maps for QSAR studies
-
Gundertofte, K.; Jørgenson, F. E. Ed.; Kluwer Academic / Plenum Publishers, New York
-
Cruciani, G.; Pastor, M.; Clementi, S. Handling information from 3D grid maps for QSAR studies., In Molecular modeling and prediction of bioactivity.; Gundertofte, K.; Jørgenson, F. E. Ed.; Kluwer Academic / Plenum Publishers, New York, 2000; pp 73-82.
-
(2000)
Molecular Modeling and Prediction of Bioactivity
, pp. 73-82
-
-
Cruciani, G.1
Pastor, M.2
Clementi, S.3
-
41
-
-
0034625096
-
Molecular fields in quantitative structure-permeation relationships: The VolSurf approach
-
Cruciani, G.; Crivori, P.; Carrupt, P.-A.; Testa, B. Molecular fields in quantitative structure-permeation relationships: the VolSurf approach. J. Mol. Struct. THEOCHEM 2000, 503, 17-30.
-
(2000)
J. Mol. Struct. THEOCHEM
, vol.503
, pp. 17-30
-
-
Cruciani, G.1
Crivori, P.2
Carrupt, P.-A.3
Testa, B.4
-
42
-
-
10644241331
-
-
Molecular Discovery Ltd., Veiale dei Castagni 16, Perugia, Italy, GOLPE, v 4.5
-
Molecular Discovery Ltd., Veiale dei Castagni 16, Perugia, Italy, GOLPE, 1999, v 4.5.
-
(1999)
-
-
-
43
-
-
0030641914
-
MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties. A comparative 3D-SAR study in a series of steroids
-
Bravi, G.; Gancia, E.; Mascagni, P.; Pegna, M.; Todeschini, R.; Zaliani, A. MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties. A comparative 3D-SAR study in a series of steroids. J. Comp.-Aided Molec. Design 1997, 11, 79-92.
-
(1997)
J. Comp.-Aided Molec. Design
, vol.11
, pp. 79-92
-
-
Bravi, G.1
Gancia, E.2
Mascagni, P.3
Pegna, M.4
Todeschini, R.5
Zaliani, A.6
-
44
-
-
0034033767
-
Application of MS-WHIM descriptors: 1. Introduction of new molecular surface properties and 2. Prediction of binding affinity data
-
Bravi, G.; Wikel, J. H. Application of MS-WHIM descriptors: 1. Introduction of new molecular surface properties and 2. Prediction of binding affinity data. Quant. Struct.-Act. Relat. 2000, 19 29-38.
-
(2000)
Quant. Struct.-Act. Relat.
, vol.19
, pp. 29-38
-
-
Bravi, G.1
Wikel, J.H.2
-
45
-
-
0042423431
-
Hologram Quantitative Structure-Activity Relationships investigations of non-nucleoside reverse transcriptase inhibitors
-
Pungpo, P.; Hannongbua, S.; Wolschann, P. Hologram Quantitative Structure-Activity Relationships investigations of non-nucleoside reverse transcriptase inhibitors. Curr, Med. Chem. 2003, 10, 1661-1677.
-
(2003)
Curr, Med. Chem.
, vol.10
, pp. 1661-1677
-
-
Pungpo, P.1
Hannongbua, S.2
Wolschann, P.3
-
46
-
-
0032856749
-
Effect of parameter variations on the effectiveness of HQSAR analyses
-
Seel, M.; Turner, D. B.; Willett, P. Effect of parameter variations on the effectiveness of HQSAR analyses. Quant. Struct.-Act. Relat. 1999, 18, 245-252.
-
(1999)
Quant. Struct.-Act. Relat.
, vol.18
, pp. 245-252
-
-
Seel, M.1
Turner, D.B.2
Willett, P.3
-
47
-
-
33845379303
-
Atom pairs as molecular features in structure-activity studies: Definition and application
-
Carhart, R. E.; Smith, D. H.; Venkataraghaven, R. Atom pairs as molecular features in structure-activity studies: definition and application. J. Chem. Inf. Comput. Sci 1985, 25, 64-73.
-
(1985)
J. Chem. Inf. Comput. Sci.
, vol.25
, pp. 64-73
-
-
Carhart, R.E.1
Smith, D.H.2
Venkataraghaven, R.3
-
48
-
-
0028454829
-
Extending the trend vector: The trend matrix and sample-based partial least-squares
-
Sheridan, R. P.; Nachbar, R. B.; Bush, B. L. Extending the trend vector: the trend matrix and sample-based partial least-squares. J. Comp.-Aided Molec. Design 1994, 8, 323-340.
-
(1994)
J. Comp.-Aided Molec. Design
, vol.8
, pp. 323-340
-
-
Sheridan, R.P.1
Nachbar, R.B.2
Bush, B.L.3
-
49
-
-
0037204550
-
Comparative modelling of cytochromes P450
-
Kirton, S. B.; Baxter, C. A.; Sutcliffe, M. J. Comparative modelling of cytochromes P450. Adv. Drug Develop. Rev. 2002, 54, 385-406.
-
(2002)
Adv. Drug Develop. Rev.
, vol.54
, pp. 385-406
-
-
Kirton, S.B.1
Baxter, C.A.2
Sutcliffe, M.J.3
-
50
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997, 18, 2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
51
-
-
0001433241
-
Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures
-
Sutcliffe, M. J.; Haneef, I.; Carney, D.; Blundell, T. L. Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. Protein Eng. 1987, 1, 377-384.
-
(1987)
Protein Eng.
, vol.1
, pp. 377-384
-
-
Sutcliffe, M.J.1
Haneef, I.2
Carney, D.3
Blundell, T.L.4
-
52
-
-
0000179199
-
Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains
-
Sutcliffe, M. J.; Hayes, F. R.; Blundell, T. L. Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains. Protein Eng. 1987, 1, 385-392.
-
(1987)
Protein Eng.
, vol.1
, pp. 385-392
-
-
Sutcliffe, M.J.1
Hayes, F.R.2
Blundell, T.L.3
-
53
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A.; Blundell, T. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 1993, 234, 779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.2
-
54
-
-
0029914807
-
450 2D6 based on homology modeling and NMR studies of substrate binding
-
450 2D6 based on homology modeling and NMR studies of substrate binding. Biochemistry 1996, 35, 4540-4550.
-
(1996)
Biochemistry
, vol.35
, pp. 4540-4550
-
-
Modi, S.1
Paine, M.J.2
Sutcliffe, M.J.3
Lian, L.Y.4
Primrose, W.U.5
Wolf, C.R.6
Roberts, G.C.K.7
-
55
-
-
10644243991
-
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Insight II, version 2000.2
-
Accelrys Inc., San Diego, CA 92121-3752 USA, Insight II, 2000, version 2000.2.
-
(2000)
-
-
-
56
-
-
10644286170
-
-
Accelrys, San Diego, CA 92121-3752 USA, Quanta, version 2000.1
-
Accelrys, San Diego, CA 92121-3752 USA, Quanta, 2000, version 2000.1.
-
(2000)
-
-
-
57
-
-
10644235919
-
-
New York, NY 10021-639 USA, Modeller, Version 3
-
Sánchez R.; Sali A., New York, NY 10021-639 USA, Modeller, 1995, Version 3.
-
(1995)
-
-
Sánchez, R.1
Sali, A.2
-
58
-
-
0029831680
-
An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies
-
Kelly, L. A.; Gardner, S.; Sutcliffe, M. J. An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies. Protein Eng. 1996, 9, 1063-1065.
-
(1996)
Protein Eng.
, vol.9
, pp. 1063-1065
-
-
Kelly, L.A.1
Gardner, S.2
Sutcliffe, M.J.3
-
59
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A.; McArthur, M. W.; Moss, D. S.; Thornton, J. M. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993, 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
McArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
60
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski, R. A.; Moss, D. S.; Thornton, J. M. Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 1993, 231, 1049-1067.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
61
-
-
0030598343
-
Deviations from standard atomic volumes as a quality measure for protein crystal structures
-
Pontius, J.; Richelle, J.; Wodak, S. J. Deviations from standard atomic volumes as a quality measure for protein crystal structures. J. Mol. Biol. 1996, 264, 121-136.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 121-136
-
-
Pontius, J.1
Richelle, J.2
Wodak, S.J.3
-
62
-
-
0031718310
-
Homology modeling, model and software evaluation: Three related resources
-
Rodriguez, R.; Chinea, G.; Lopez, N.; Pons, T.; Vriend, G. Homology modeling, model and software evaluation: three related resources. Bioinformatics 1998, 14, 523-528.
-
(1998)
Bioinformatics
, vol.14
, pp. 523-528
-
-
Rodriguez, R.1
Chinea, G.2
Lopez, N.3
Pons, T.4
Vriend, G.5
-
63
-
-
10644235918
-
-
http://biotech.ebi.ac.uk:8400
-
-
-
-
64
-
-
0027180507
-
Verification of protein structures: Patterns of nonbonded atomic interactions
-
Colovos, C.; Yeates, T. O. Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci. 1993, 2, 1511-1519.
-
(1993)
Protein Sci.
, vol.2
, pp. 1511-1519
-
-
Colovos, C.1
Yeates, T.O.2
-
65
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
Luthy, R.; Bowie, J. U.; Eisenberg, D. Assessment of protein models with three-dimensional profiles. Nature 1992, 356 83-85.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
66
-
-
0031301954
-
Criteria for evaluating protein structures derived from comparative modeling
-
Venclovas, C.; Zemla, A.; Fidelis, K.; Moult, J. Criteria for evaluating protein structures derived from comparative modeling. Proteins 1997, Suppl., 7-13.
-
(1997)
Proteins
, Issue.SUPPL.
, pp. 7-13
-
-
Venclovas, C.1
Zemla, A.2
Fidelis, K.3
Moult, J.4
-
67
-
-
0031302732
-
Assessment of comparative modeling in CASP2
-
Martin, A. C.; MacArthur, M. W.; Thornton, J. M. Assessment of comparative modeling in CASP2. Proteins 1997, Suppl. 1 14-28.
-
(1997)
Proteins
, Issue.SUPPL. 1
, pp. 14-28
-
-
Martin, A.C.1
MacArthur, M.W.2
Thornton, J.M.3
-
68
-
-
0037046521
-
Development of a combined protein and pharmacophore model for CYP2C9
-
de Groot, M. J.; Alex, A. A.; Jones, B. C. Development of a combined protein and pharmacophore model for CYP2C9. J. Med. Chem. 2002, 45, 1983-1993.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 1983-1993
-
-
de Groot, M.J.1
Alex, A.A.2
Jones, B.C.3
-
69
-
-
0029128881
-
The substrate binding site of human liver cytochrome P450 2C9: An approach using designed tienilic acid derivatives and molecular modeling
-
Mancy, A.; Brotto, P.; Dijols, S.; Dansette, P. M.; Mansuy, D. The substrate binding site of human liver cytochrome P450 2C9: an approach using designed tienilic acid derivatives and molecular modeling. Biochemistry 1995, 34, 10365-10375.
-
(1995)
Biochemistry
, vol.34
, pp. 10365-10375
-
-
Mancy, A.1
Brotto, P.2
Dijols, S.3
Dansette, P.M.4
Mansuy, D.5
-
70
-
-
0031841377
-
Cytochrome P4502C9: An enzyme of major importance in human drug metabolism
-
Miners, J. O.; Birkett, D. J. Cytochrome P4502C9: an enzyme of major importance in human drug metabolism. Br. J. Clin. Pharmacol. 1998, 45, 525-538.
-
(1998)
Br. J. Clin. Pharmacol.
, vol.45
, pp. 525-538
-
-
Miners, J.O.1
Birkett, D.J.2
-
71
-
-
0033485933
-
Structural forms of phenprocoumon and warfarin that are metabolized at the active site of CYP2C9
-
He, M.; Korzekwa, K. R.; Jones, J. P.; Rettie, A. E.; Trager, W. F. Structural forms of phenprocoumon and warfarin that are metabolized at the active site of CYP2C9. Arch. Biochem. Biophys. 1999, 372, 16-28.
-
(1999)
Arch. Biochem. Biophys.
, vol.372
, pp. 16-28
-
-
He, M.1
Korzekwa, K.R.2
Jones, J.P.3
Rettie, A.E.4
Trager, W.F.5
-
72
-
-
10644224854
-
-
Tripos Inc., 1699 South Hanley Rd., St. Louis, Missouri 63144 USA, SYBYL 6.7, Version 6.7
-
Tripos Inc., 1699 South Hanley Rd., St. Louis, Missouri 63144 USA, SYBYL 6.7, 2000, Version 6.7.
-
(2000)
-
-
-
73
-
-
0001908117
-
Interactive visualization of molecular scenarios with MOLCAD/SYBYL
-
Brickmann, J.; Heiden, W.; Moekel, G.; Reiling, S.; Vollhardt, H.; Zachmann, C.-D. Interactive visualization of molecular scenarios with MOLCAD/SYBYL. Data Visualization Mol. Sci. 1995 83-97.
-
(1995)
Data Visualization Mol. Sci.
, pp. 83-97
-
-
Brickmann, J.1
Heiden, W.2
Moekel, G.3
Reiling, S.4
Vollhardt, H.5
Zachmann, C.-D.6
-
74
-
-
0037228099
-
Substrate selectivity of human cytochrome P450 2C9: Importance of residues 476, 365, and 114 in recognition of diclofenac and sulfaphenazole and in mechanism-based inactivation by tienilic acid
-
Melet, A.; Assrir, N.; Jean, P.; Lopez-Garcia, M. P.; Marques-Soares, C.; Jaouen, M.; Dansette, P. M.; Sari, M.-A.; Mansuy, D. Substrate selectivity of human cytochrome P450 2C9: importance of residues 476, 365, and 114 in recognition of diclofenac and sulfaphenazole and in mechanism-based inactivation by tienilic acid. Arch. Biochem. Biophys. 2003, 409, 80-91.
-
(2003)
Arch. Biochem. Biophys.
, vol.409
, pp. 80-91
-
-
Melet, A.1
Assrir, N.2
Jean, P.3
Lopez-Garcia, M.P.4
Marques-Soares, C.5
Jaouen, M.6
Dansette, P.M.7
Sari, M.-A.8
Mansuy, D.9
-
75
-
-
0022919721
-
Crystal structure of substrate-free Pseudomonas putida cytochrome P-450
-
Poulos, T. L.; Finzel, B. C.; Howard, A. J. Crystal structure of substrate-free Pseudomonas putida cytochrome P-450. Biochemistry 1986, 25, 5314-5322.
-
(1986)
Biochemistry
, vol.25
, pp. 5314-5322
-
-
Poulos, T.L.1
Finzel, B.C.2
Howard, A.J.3
-
76
-
-
0027326717
-
Crystal structure of hemoprotein domain of P450BM-3, a prototype for microsomal P450s
-
Ravichandran, K. G.; Boddupalli, S. S.; Hasemann, C. A.; Peterson, J. A.; Deisenhofer, J. Crystal structure of hemoprotein domain of P450BM-3, a prototype for microsomal P450s. Science 1993, 261, 731-736.
-
(1993)
Science
, vol.261
, pp. 731-736
-
-
Ravichandran, K.G.1
Boddupalli, S.S.2
Hasemann, C.A.3
Peterson, J.A.4
Deisenhofer, J.5
-
77
-
-
13044258884
-
sca-2 from Streptomyces carbophilus involved in production of pravastatin sodium, a tissue-selective inhibitor of HMG-CoA reductase
-
sca-2 from Streptomyces carbophilus involved in production of pravastatin sodium, a tissue-selective inhibitor of HMG-CoA reductase. Acta Cryst. Sect. D - Biol. Crystallogr. 1999 55, 1209-1211.
-
(1999)
Acta Cryst. Sect. D - Biol. Crystallogr.
, vol.55
, pp. 1209-1211
-
-
Ito, S.1
Matsuoka, T.2
Watanabe, I.3
Kagasaki, T.4
Serizawa, N.5
Hata, T.6
-
78
-
-
0034724310
-
Crystal structures of ligand complexes of P450eryF exhibiting homotropic cooperativity
-
Cupp-Vickery, J.; Anderson, R.; Hatziris, Z. Crystal structures of ligand complexes of P450eryF exhibiting homotropic cooperativity. Proc. Natl. Acad Sci. USA 2000, 97, 3050-3055.
-
(2000)
Proc. Natl. Acad Sci. USA
, vol.97
, pp. 3050-3055
-
-
Cupp-Vickery, J.1
Anderson, R.2
Hatziris, Z.3
-
80
-
-
0037809271
-
The 1.92-Å structure of Streptomyces coelicolor A3(2) CYP154C1
-
Podust, L. M.; Kim, Y.; Arase, M.; Neely, B. A.; Beck, B. J.; Bach, H.; Sherman, D. H.; Lamb, D. C.; Kelly, S. L.; Waterman, M. R. The 1.92-Å structure of Streptomyces coelicolor A3(2) CYP154C1. J. Biol. Chem. 2003, 278, 12214-12221.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 12214-12221
-
-
Podust, L.M.1
Kim, Y.2
Arase, M.3
Neely, B.A.4
Beck, B.J.5
Bach, H.6
Sherman, D.H.7
Lamb, D.C.8
Kelly, S.L.9
Waterman, M.R.10
-
81
-
-
0347298786
-
Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis
-
Zerbe, K.; Pylypenko, O.; Vitali, F.; Zhang, W.; Rouset, S.; Heck, M.; Vrijbloed, J. W.; Beschoff, D.; Bister, B.; Süssmeth, R. D.; Pelzer, S.; Wohlleben, W.; Robinson, J. A.; Schlichting, I. Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis. J. Biol. Chem. 2003, 277, 47476-47485.
-
(2003)
J. Biol. Chem.
, vol.277
, pp. 47476-47485
-
-
Zerbe, K.1
Pylypenko, O.2
Vitali, F.3
Zhang, W.4
Rouset, S.5
Heck, M.6
Vrijbloed, J.W.7
Beschoff, D.8
Bister, B.9
Süssmeth, R.D.10
Pelzer, S.11
Wohlleben, W.12
Robinson, J.A.13
Schlichting, I.14
-
82
-
-
0035853108
-
Crystal structure of cytochrome P450 14α-sterol demethylase (CYP51) from Mycobacterium tuberculosis in complex with azole inhibitors
-
Podust, L. M.; Poulos, T. L.; Waterman, M. R. Crystal structure of cytochrome P450 14α-sterol demethylase (CYP51) from Mycobacterium tuberculosis in complex with azole inhibitors. Proc. Natl. Acad. Sci. USA 2001, 98, 3068-3073.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3068-3073
-
-
Podust, L.M.1
Poulos, T.L.2
Waterman, M.R.3
-
83
-
-
0242582120
-
Crystal structure of epothilone D-bound, epothilone B-bound and substrate-free forms of cytochrome P450epoK
-
Nagano, S.; Li, H.; Shimizu, H.; Nishida, C.; Ogura, H.; Ortiz de Montellano, P. R.; Poulos, T. L. Crystal structure of epothilone D-bound, epothilone B-bound and substrate-free forms of cytochrome P450epoK. J. Biol. Chem. 2003, 278, 44886-44893.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 44886-44893
-
-
Nagano, S.1
Li, H.2
Shimizu, H.3
Nishida, C.4
Ogura, H.5
Ortiz de Montellano, P.R.6
Poulos, T.L.7
-
84
-
-
0030842613
-
Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum
-
Park, S. Y.; Shimizu, H.; Adachi, S.; Nakagawa, A.; Tanaka, I.; Nakahara, K.; Shoun, H.; Obayashi, E.; Nakamura, H.; Iizuka, T.; Shiro, Y. Crystal structure of nitric oxide reductase from denitrifying fungus Fusarium oxysporum. Nat. Struct. Biol. 1997, 4, 827-832.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 827-832
-
-
Park, S.Y.1
Shimizu, H.2
Adachi, S.3
Nakagawa, A.4
Tanaka, I.5
Nakahara, K.6
Shoun, H.7
Obayashi, E.8
Nakamura, H.9
Iizuka, T.10
Shiro, Y.11
-
85
-
-
0034613190
-
Crystal structure of a thermophylic cytochrome P450 from the Archaeon Sulfolobus solfataricus
-
Yano, J. K.; Koo, L. S.; Schuller, D. J.; Li, H.; Ortiz de Montellano, P. R.; Poulos, T. L. Crystal structure of a thermophylic cytochrome P450 from the Archaeon Sulfolobus solfataricus. J. Biol. Chem. 2000, 275, 31086-31092.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31086-31092
-
-
Yano, J.K.1
Koo, L.S.2
Schuller, D.J.3
Li, H.4
Ortiz de Montellano, P.R.5
Poulos, T.L.6
-
86
-
-
0345687195
-
An open conformation of mammalian cytochrome P450 2B4 at 1.6-Å resolution
-
Scott, E. E.; He, Y. A.; Wester, M. R.; White, M. A.; Chin, C. C.; Halpert, J. R.; Johnson, E. F.; Stout, C. D. An open conformation of mammalian cytochrome P450 2B4 at 1.6-Å resolution. Proc. Nat. Acad. Sci. USA 2003, 100, 13196-13201.
-
(2003)
Proc. Nat. Acad. Sci. USA
, vol.100
, pp. 13196-13201
-
-
Scott, E.E.1
He, Y.A.2
Wester, M.R.3
White, M.A.4
Chin, C.C.5
Halpert, J.R.6
Johnson, E.F.7
Stout, C.D.8
-
87
-
-
3042553224
-
Structure of mammalian cytochrome P450 2B4 complexed with 4-(4-chlorophenyl)imidazole at 1.9-Å resolution: Insight into the range of P450 conformations and coordination of redox partner binding
-
accepted for publication
-
Scott, E. E.; White, M. A.; He, Y. A.; Johnson, E. F.; Stout, C. D.; Halpert, J. R. Structure of mammalian cytochrome P450 2B4 complexed with 4-(4-chlorophenyl)imidazole at 1.9-Å resolution: insight into the range of P450 conformations and coordination of redox partner binding. J. Biol. Chem. 2004, accepted for publication.
-
(2004)
J. Biol. Chem.
-
-
Scott, E.E.1
White, M.A.2
He, Y.A.3
Johnson, E.F.4
Stout, C.D.5
Halpert, J.R.6
-
88
-
-
0031877729
-
The CYP2 family: Models, mutants and interactions
-
Lewis, D. F. V. The CYP2 family: models, mutants and interactions. Xenobiotica 1998, 28, 617-661.
-
(1998)
Xenobiotica
, vol.28
, pp. 617-661
-
-
Lewis, D.F.V.1
-
89
-
-
0032876705
-
CASP3 comparative modeling evaluation
-
Jones, T. A.; Kleywegt, G. J. CASP3 comparative modeling evaluation. Proteins 1999, 37, 30-46.
-
(1999)
Proteins
, vol.37
, pp. 30-46
-
-
Jones, T.A.1
Kleywegt, G.J.2
-
90
-
-
0018615011
-
Defective N-oxidation of sparteine in man: A new pharmacogenetic effect
-
Eichelbaum, M.; Spannbrucker, N.; Steineke, B.; Dengler, H. J. Defective N-oxidation of sparteine in man: a new pharmacogenetic effect. Eur. J. Clin. Pharmacol. 1979, 16, 183-187.
-
(1979)
Eur. J. Clin. Pharmacol.
, vol.16
, pp. 183-187
-
-
Eichelbaum, M.1
Spannbrucker, N.2
Steineke, B.3
Dengler, H.J.4
-
91
-
-
0029558569
-
Metabolic polymorphisms and cancer susceptibility
-
Smith, G.; Stanley, L. A.; Sim, E.; Strange, R. C.; Wolf, C. R. Metabolic polymorphisms and cancer susceptibility. Cancer Surv. 1995, 25, 27-65.
-
(1995)
Cancer Surv.
, vol.25
, pp. 27-65
-
-
Smith, G.1
Stanley, L.A.2
Sim, E.3
Strange, R.C.4
Wolf, C.R.5
-
92
-
-
0026553661
-
A predictive model for substrates of cytochrome P-450-debrisoquine (2D6)
-
Koymans, L. M. H.; Vermeulen, N. P. E.; van Acker, S. A. B. E.; te Koppele, J. M.; Heykants, J. J. P.; Lavrijsen, K.; Meuldermans, W.; Donné-Op den Kelder, G. M. A predictive model for substrates of cytochrome P-450-debrisoquine (2D6). Chem. Res. Toxicol. 1992 5, 211-219.
-
(1992)
Chem. Res. Toxicol.
, vol.5
, pp. 211-219
-
-
Koymans, L.M.H.1
Vermeulen, N.P.E.2
van Acker, S.A.B.E.3
te Koppele, J.M.4
Heykants, J.J.P.5
Lavrijsen, K.6
Meuldermans, W.7
Donné-Op den Kelder, G.M.8
-
93
-
-
0022885696
-
Genetics of drug transformation
-
Kalow, W. Genetics of drug transformation. Clin. Biochem. 1986, 19, 76-82.
-
(1986)
Clin. Biochem.
, vol.19
, pp. 76-82
-
-
Kalow, W.1
-
94
-
-
0024818411
-
Polymorphic drug metabolism
-
Relling, M. V. Polymorphic drug metabolism. Clin. Pharm. 1989, 8, 852-863.
-
(1989)
Clin. Pharm.
, vol.8
, pp. 852-863
-
-
Relling, M.V.1
-
95
-
-
0025639014
-
Genetic polymorphisms of drug metabolism
-
Meyer, U. A. Genetic polymorphisms of drug metabolism. Fundam. Clin. Pharmacol. 1990, 4, 595-615.
-
(1990)
Fundam. Clin. Pharmacol.
, vol.4
, pp. 595-615
-
-
Meyer, U.A.1
-
96
-
-
0022899555
-
The molecular mechanism of two common polymorphisms of drug oxidation. Evidence for functional changes in cytochrome P-450 isozymes catalysing bufuralol and mephenytoin oxidation
-
Meyer, U. A.; Gut, J.; Krunbach, T.; Skoda, C.; Meier, U. T.; Catin, T.; Dayer, P. The molecular mechanism of two common polymorphisms of drug oxidation. Evidence for functional changes in cytochrome P-450 isozymes catalysing bufuralol and mephenytoin oxidation. Xenobiotica 1986, 16, 449-464.
-
(1986)
Xenobiotica
, vol.16
, pp. 449-464
-
-
Meyer, U.A.1
Gut, J.2
Krunbach, T.3
Skoda, C.4
Meier, U.T.5
Catin, T.6
Dayer, P.7
-
97
-
-
0026046988
-
A three-dimensional molecular template for substrates of human cytochrome P450 involved in debrisoquine 4-hydroxylation
-
Islam, S. A.; Wolf, C. R.; Lennard, M. S.; Sternberg, M. J. E. A three-dimensional molecular template for substrates of human cytochrome P450 involved in debrisoquine 4-hydroxylation. Carcinogenesis 1991, 12, 2211-2219.
-
(1991)
Carcinogenesis
, vol.12
, pp. 2211-2219
-
-
Islam, S.A.1
Wolf, C.R.2
Lennard, M.S.3
Sternberg, M.J.E.4
-
98
-
-
0033529017
-
Novel approach to predicting P450 mediated drug metabolism. The development of a combined protein and pharmacophore model for CYP2D6
-
de Groot, M. J.; Ackland, M. J.; Horne, V. A.; Alex, A. A.; Jones, B. C. Novel approach to predicting P450 mediated drug metabolism. The development of a combined protein and pharmacophore model for CYP2D6. J. Med. Chem. 1999, 42, 1515-1524.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 1515-1524
-
-
de Groot, M.J.1
Ackland, M.J.2
Horne, V.A.3
Alex, A.A.4
Jones, B.C.5
-
99
-
-
0033533750
-
A Novel Approach to Predicting P450 Mediated Drug Metabolism. CYP2D6 Catalyzed N-Dealkylation Reactions and Qualitative Metabolite Predictions Using a Combined Protein and Pharmacophore Model for CYP2D6
-
de Groot, M. J.; Ackland, M. J.; Horne, V. A.; Alex, A. A.; Jones, B. C. A Novel Approach to Predicting P450 Mediated Drug Metabolism. CYP2D6 Catalyzed N-Dealkylation Reactions and Qualitative Metabolite Predictions Using a Combined Protein and Pharmacophore Model for CYP2D6 J. Med. Chem. 1999, 42, 4062-4070.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 4062-4070
-
-
de Groot, M.J.1
Ackland, M.J.2
Horne, V.A.3
Alex, A.A.4
Jones, B.C.5
-
100
-
-
0037413558
-
Homology modeling of rat and human cytochrome P450 2D (CYP2D) isoforms and computational rationalization of experimental ligand-binding specificities
-
Venhorst, J.; ter Laak, A. M.; Comandeur, J. N. M.; Funae, Y.; Hiroi, T.; Vermeulen, N. P. E. Homology modeling of rat and human cytochrome P450 2D (CYP2D) isoforms and computational rationalization of experimental ligand-binding specificities. J. Med. Chem. 2003 46, 74-86.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 74-86
-
-
Venhorst, J.1
ter Laak, A.M.2
Comandeur, J.N.M.3
Funae, Y.4
Hiroi, T.5
Vermeulen, N.P.E.6
-
101
-
-
0030200485
-
Active site topologies of human CYP2D6 and its aspartate-301 → glutamate, Asparagine and glycine mutants
-
Mackman, R.; Tschirret-Guth, R. A.; Smith, G.; Hayhurst, G. P.; Ellis, S. W.; Lennard, M. S.; Tucker, G. T.; Wolf, C. R.; Ortiz de Montellano, P. R. Active site topologies of human CYP2D6 and its aspartate-301 → glutamate, Asparagine and glycine mutants. Arch. Biochem. Biophys. 1996, 331, 134-140,
-
(1996)
Arch. Biochem. Biophys.
, vol.331
, pp. 134-140
-
-
Mackman, R.1
Tschirret-Guth, R.A.2
Smith, G.3
Hayhurst, G.P.4
Ellis, S.W.5
Lennard, M.S.6
Tucker, G.T.7
Wolf, C.R.8
Ortiz de Montellano, P.R.9
-
102
-
-
0032080291
-
Determinants of the substrate specificity of human cytochrome P-450 CYP2D6: Design and construction of a mutant with testosterone hydroxylase activity
-
Smith, G.; Modi, S.; Pillai, I.; Lian, L.-Y.; Suthcliffe, M. J.; Pritchard, M. P.; Friedberg, T.; Roberts, G. C. K.; Wolf, C. R. Determinants of the substrate specificity of human cytochrome P-450 CYP2D6: design and construction of a mutant with testosterone hydroxylase activity. Biochem. J. 1998, 331, 783-792.
-
(1998)
Biochem. J.
, vol.331
, pp. 783-792
-
-
Smith, G.1
Modi, S.2
Pillai, I.3
Lian, L.-Y.4
Suthcliffe, M.J.5
Pritchard, M.P.6
Friedberg, T.7
Roberts, G.C.K.8
Wolf, C.R.9
-
103
-
-
0036836542
-
Impact of incorporating the CYP2C5 crystal structure into comparative models of cytochrome P450 2D6
-
Kirton, S. B.; Kemp, C. A.; Tomkinson, N. P.; St.-Gallay, S.; Sutcliffe, M. J. Impact of incorporating the CYP2C5 crystal structure into comparative models of cytochrome P450 2D6. Proteins Struct. Funct. Genet. 2002, 49, 216-231.
-
(2002)
Proteins Struct. Funct. Genet.
, vol.49
, pp. 216-231
-
-
Kirton, S.B.1
Kemp, C.A.2
Tomkinson, N.P.3
St.-Gallay, S.4
Sutcliffe, M.J.5
-
104
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
Jones, G.; Willet, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 1997, 267, 727-748.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willet, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
105
-
-
0025868355
-
Impact of environmental and genetic factors on codeine analgesia
-
Desmeules, J.; Gascon, M.-P.; Dayer, P.; Magistris, M. Impact of environmental and genetic factors on codeine analgesia. Eur. J. Clin. Pharmacol. 1991, 41, 23-26.
-
(1991)
Eur. J. Clin. Pharmacol.
, vol.41
, pp. 23-26
-
-
Desmeules, J.1
Gascon, M.-P.2
Dayer, P.3
Magistris, M.4
-
106
-
-
0025820318
-
Differential foetal development of the O- and N-demethylation of codeine and dextromethorphan in man
-
Ladona, M. G.; Lindstrom, B.; Thyr, C.; Dun-Ren, P.; Rane, A. Differential foetal development of the O- and N-demethylation of codeine and dextromethorphan in man. Br. J. Clin. Pharmacol. 1991, 32, 295-302.
-
(1991)
Br. J. Clin. Pharmacol.
, vol.32
, pp. 295-302
-
-
Ladona, M.G.1
Lindstrom, B.2
Thyr, C.3
Dun-Ren, P.4
Rane, A.5
-
107
-
-
0033533750
-
A novel approach to predicting P450 mediated drug metabolism. CYP2D6 catalyzed N-dealkylation reactions and qualitative metabolite predictions using a combined protein and pharmacophore model for CYP2D6
-
de Groot, M. J.; Ackland, M. J.; Horne, V. A.; Alex, A. A.; Jones, B. C. A novel approach to predicting P450 mediated drug metabolism. CYP2D6 catalyzed N-dealkylation reactions and qualitative metabolite predictions using a combined protein and pharmacophore model for CYP2D6. J. Med. Chem. 1999, 42, 4062-4070.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 4062-4070
-
-
de Groot, M.J.1
Ackland, M.J.2
Horne, V.A.3
Alex, A.A.4
Jones, B.C.5
-
108
-
-
0033669346
-
Influence of N-substitution of 7-methoxy-4-(aminomethyl)-coumarin on cytochrome P450 metabolism and selectivity
-
Venhorst, J.; Onderwater, R. C. A.; Meerman, J. H. N.; Comandeur, J. N. M.; Vermeulen, N. P. E. Influence of N substitution of 7-methoxy-4-(aminomethyl)-coumarin on cytochrome P450 metabolism and selectivity. Drug. Metab. Dispos. 2000, 28 1524-1532.
-
(2000)
Drug Metab. Dispos.
, vol.28
, pp. 1524-1532
-
-
Venhorst, J.1
Onderwater, R.C.A.2
Meerman, J.H.N.3
Comandeur, J.N.M.4
Vermeulen, N.P.E.5
-
109
-
-
0035955733
-
Diversity in mechanisms of substrate oxidation by cytochrome P450 2D6. Lack of an allosteric role of NADPH-cytochrome P450 reductase in catalytic regioselectivity
-
Hanna, I. H.: Krauser, J. A.; Cai, H.; Kim, M. S.; Guengerich, F. P. Diversity in mechanisms of substrate oxidation by cytochrome P450 2D6. Lack of an allosteric role of NADPH-cytochrome P450 reductase in catalytic regioselectivity. J. Biol. Chem. 2001, 276, 39553-39561.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 39553-39561
-
-
Hanna, I.H.1
Krauser, J.A.2
Cai, H.3
Kim, M.S.4
Guengerich, F.P.5
-
110
-
-
0037423276
-
Residues glutamate 216 and aspartate 301 are key determinants of substrate specificity and product regioselectivity in cytochrome P450 2D6
-
Paine, M. J.; McLaughlin, L. A.; Flanagan, J. U.; Kemp, C. A.; Sutcliffe, M. J.; Roberts, G. C.; Wolf, C. R. Residues glutamate 216 and aspartate 301 are key determinants of substrate specificity and product regioselectivity in cytochrome P450 2D6. J. Biol. Chem. 2003, 278, 4021-4027.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 4021-4027
-
-
Paine, M.J.1
McLaughlin, L.A.2
Flanagan, J.U.3
Kemp, C.A.4
Sutcliffe, M.J.5
Roberts, G.C.6
Wolf, C.R.7
-
111
-
-
0036135826
-
Combined three-dimensional quantitative structure-activity relationship analysis of cytochrome P450 2B6 substrates and protein homology modeling
-
Wang, Q.; Halpert, J. R. Combined three-dimensional quantitative structure-activity relationship analysis of cytochrome P450 2B6 substrates and protein homology modeling. Drug Metab. Dispos. 2002, 30, 86-95.
-
(2002)
Drug Metab. Dispos.
, vol.30
, pp. 86-95
-
-
Wang, Q.1
Halpert, J.R.2
-
112
-
-
0030053733
-
Three-dimensional quantitative structure-activity relationship for inhibitors of cytochrome P4502C9
-
Jones, J. P.; He, M.; Trager, W. F.; Rettie, A. E. Three-dimensional quantitative structure-activity relationship for inhibitors of cytochrome P4502C9. Drug Metab. Dispos. 1996, 24, 1-6.
-
(1996)
Drug Metab. Dispos.
, vol.24
, pp. 1-6
-
-
Jones, J.P.1
He, M.2
Trager, W.F.3
Rettie, A.E.4
-
113
-
-
0034721138
-
A refined 3-dimensional QSAR of cytochrome P450 2C9: Computational predictions of drug interactions
-
Rao, S.; Aoyama, R.; Schrag, M.; Trager, W. F.; Rettie, A.; Jones, J. P. A refined 3-dimensional QSAR of cytochrome P450 2C9: computational predictions of drug interactions. J. Med. Chem. 2000, 43, 2789-2796.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 2789-2796
-
-
Rao, S.1
Aoyama, R.2
Schrag, M.3
Trager, W.F.4
Rettie, A.5
Jones, J.P.6
-
114
-
-
0034696808
-
Arginines 97 and 108 in CYP2C9 are important determinants of the catalytic function
-
Ridderström, M.; Masimirembwa, C.; Trump-Kallmeyer, S.; Ahlefelt, M.; Otter, C.; Andersson, T. B. Arginines 97 and 108 in CYP2C9 are important determinants of the catalytic function. Chem. Biol. Res. Commun. 2000, 270, 983-987.
-
(2000)
Chem. Biol. Res. Commun.
, vol.270
, pp. 983-987
-
-
Ridderström, M.1
Masimirembwa, C.2
Trump-Kallmeyer, S.3
Ahlefelt, M.4
Otter, C.5
Andersson, T.B.6
-
115
-
-
0035065393
-
Competitive CYP2C9 inhibitors: Enzyme inhibition studies, protein homology modeling, and three-dimensional quantitative structure-activity relationship analysis
-
Afzelius, L.; Zamora, I.; Ridderström, M.; Andersson, T. B.; Karlén, A.; Masimirembwa, C. M. Competitive CYP2C9 inhibitors: enzyme inhibition studies, protein homology modeling, and three-dimensional quantitative structure-activity relationship analysis. Mol. Pharmacol. 2001, 59, 909-919.
-
(2001)
Mol. Pharmacol.
, vol.59
, pp. 909-919
-
-
Afzelius, L.1
Zamora, I.2
Ridderström, M.3
Andersson, T.B.4
Karlén, A.5
Masimirembwa, C.M.6
-
116
-
-
0033970047
-
Mammalian microsomal cytochrome P450 monooxygenase: Structural adaptations for membrane binding and functional diversity
-
Williams, P. A.; Cosine, J.; Sridhar, V.; Johnson, E. F.; McRee, D. E. Mammalian microsomal cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity. Mol. Cell 2000, 5, 121-131.
-
(2000)
Mol. Cell
, vol.5
, pp. 121-131
-
-
Williams, P.A.1
Cosine, J.2
Sridhar, V.3
Johnson, E.F.4
McRee, D.E.5
-
117
-
-
10644243126
-
-
http://www.astex-technology.com/one/29_37.html
-
-
-
-
118
-
-
0142103879
-
Crystallographic studies on the complex behavior of nicotine binding to P450cam (CYP101)
-
Strickler, M.; Goldstein, B. M.; Maxfield, K.; Shireman, L.; Kim, G.; Matteson, D. S.; Jones, J. P. Crystallographic studies on the complex behavior of nicotine binding to P450cam (CYP101) Biochemistry 2003, 42, 11943-11950.
-
(2003)
Biochemistry
, vol.42
, pp. 11943-11950
-
-
Strickler, M.1
Goldstein, B.M.2
Maxfield, K.3
Shireman, L.4
Kim, G.5
Matteson, D.S.6
Jones, J.P.7
-
119
-
-
0344824425
-
Cytochrome P450 flexibility
-
Poulos, T. L. Cytochrome P450 flexibility Proc. Nat. Acad. Sci. USA 2003, 100, 13121-13122.
-
(2003)
Proc. Nat. Acad. Sci. USA
, vol.100
, pp. 13121-13122
-
-
Poulos, T.L.1
-
120
-
-
0034962557
-
Pharmacophore and three-dimensional quantitative structure activity relationship methods for modeling cytochrome P450 active sites
-
Ekins, S.; de Groot, M. J.; Jones, J. P. Pharmacophore and three-dimensional quantitative structure activity relationship methods for modeling cytochrome P450 active sites. Drug Metab. Dispos. 2001, 29, 936-944.
-
(2001)
Drug Metab. Dispos.
, vol.29
, pp. 936-944
-
-
Ekins, S.1
de Groot, M.J.2
Jones, J.P.3
-
121
-
-
0033776103
-
Three dimensional-quantitative structure activity relationship computational approaches for prediction of human in vitro intrinsic clearance
-
Ekins, S.; Obach, R. S. Three dimensional-quantitative structure activity relationship computational approaches for prediction of human in vitro intrinsic clearance. J. Pharmacol. Exp. Ther. 2000, 295, 463-473.
-
(2000)
J. Pharmacol. Exp. Ther.
, vol.295
, pp. 463-473
-
-
Ekins, S.1
Obach, R.S.2
-
122
-
-
0022521078
-
Molecular dimensions of the substrate binding site of cytochrome P-488
-
Lewis, D. F. V.; Ioannides, C.; Parke, D. V. Molecular dimensions of the substrate binding site of cytochrome P-488. Biochem. Pharmacol. 1986, 35, 2179-2185.
-
(1986)
Biochem. Pharmacol.
, vol.35
, pp. 2179-2185
-
-
Lewis, D.F.V.1
Ioannides, C.2
Parke, D.V.3
-
123
-
-
0024322650
-
Molecular orbital studies of oxygen activation and mechanisms of cytochrome P-450-mediated oxidative metabolism of xenobiotics
-
Lewis, D. F. V.; Ioannides, C.; Parke, D. V. Molecular orbital studies of oxygen activation and mechanisms of cytochrome P-450-mediated oxidative metabolism of xenobiotics. Chem.-Biol. Interact. 1989, 70, 263-280.
-
(1989)
Chem.-Biol. Interact.
, vol.70
, pp. 263-280
-
-
Lewis, D.F.V.1
Ioannides, C.2
Parke, D.V.3
-
124
-
-
0023522162
-
The cytochromes P-488 - A unique family of enzymes involved in chemical toxicity and carcinogenesis
-
Ioannides, C.; Parke, D. V. The cytochromes P-488 - A unique family of enzymes involved in chemical toxicity and carcinogenesis. Biochem. Pharmacol. 1987, 36, 4197-4207.
-
(1987)
Biochem. Pharmacol.
, vol.36
, pp. 4197-4207
-
-
Ioannides, C.1
Parke, D.V.2
-
125
-
-
0030873260
-
Quantitative structure activity relationships in substrates, inducers, and inhibitors of cytochrome P4501 (CYP1)
-
Lewis, D. F. V. Quantitative structure activity relationships in substrates, inducers, and inhibitors of cytochrome P4501 (CYP1). Drug Metab. Rev. 1997, 29, 589-650.
-
(1997)
Drug Metab. Rev.
, vol.29
, pp. 589-650
-
-
Lewis, D.F.V.1
-
126
-
-
0002662424
-
Stereochemical modeling of the catalytic site of cytochrome P450c
-
Sato, R.; Kato, R. Ed.; Japan Scientific Societies Press, Tokyo
-
Jerina, D. M.; Michaud, D. P.; Feldman, R. J.; Armstrong, R. N.; Vyas, K. P.; Thakker, D. R.; Yagi, H.; Thomas, P. E.; Ryan, D. E.; Levin, W. Stereochemical modeling of the catalytic site of cytochrome P450c., In Microsomes, drug oxidations, and drug toxicity.; Sato, R.; Kato, R. Ed.; Japan Scientific Societies Press, Tokyo, 1982; pp 195-201.
-
(1982)
Microsomes, Drug Ooxidations, and Drug Toxicity
, pp. 195-201
-
-
Jerina, D.M.1
Michaud, D.P.2
Feldman, R.J.3
Armstrong, R.N.4
Vyas, K.P.5
Thakker, D.R.6
Yagi, H.7
Thomas, P.E.8
Ryan, D.E.9
Levin, W.10
-
127
-
-
0002844452
-
The role of cytochrome P-450 in the metabolism of chemical carcinogens
-
Guengerich, F. P. Ed.; CRC Press, Boca Raton
-
Kadlubar, F. F.; Hammons, G. J. The role of cytochrome P-450 in the metabolism of chemical carcinogens., In Mammalian cytochromes P450.; Guengerich, F. P. Ed.; CRC Press, Boca Raton, 1987; pp 81-130.
-
(1987)
Mammalian Cytochromes P450
, pp. 81-130
-
-
Kadlubar, F.F.1
Hammons, G.J.2
-
128
-
-
0023866757
-
Stereoselectivity of cytochrome P-450 isozymes and epoxide hydrolase in the metabolism of polycyclic aromatic hydrocarbons
-
Yang, S. K. Stereoselectivity of cytochrome P-450 isozymes and epoxide hydrolase in the metabolism of polycyclic aromatic hydrocarbons. Biochem. Pharmacol. 1988, 37, 61-70.
-
(1988)
Biochem. Pharmacol.
, vol.37
, pp. 61-70
-
-
Yang, S.K.1
-
129
-
-
10644234350
-
Computational chemistry in biotransformational and toxicological research. Mechanisms of oxidation by and active site structure of Cytochromes P450
-
Vrije Universiteit Amsterdam Thesis
-
Koymans, L. M. H., Thesis, Computational chemistry in biotransformational and toxicological research. Mechanisms of oxidation by and active site structure of Cytochromes P450., Vrije Universiteit Amsterdam, 1992.
-
(1992)
-
-
Koymans, L.M.H.1
-
130
-
-
0027321139
-
Cytochromes P450: Their active site structure and mechanism of oxidation
-
Koymans, L. M. H.; Donné-Op den Kelder, G. M.; te Koppele, J. M.; Vermeulen, N. P. E. Cytochromes P450: their active site structure and mechanism of oxidation. Drug Metab. Rev. 1993, 25, 325-387.
-
(1993)
Drug Metab. Rev.
, vol.25
, pp. 325-387
-
-
Koymans, L.M.H.1
Donné-Op den Kelder, G.M.2
te Koppele, J.M.3
Vermeulen, N.P.E.4
-
131
-
-
0027452618
-
Quinolone antibacterial agents: Relationship between structure and in vitro inhibition of human cytochrome P450 isoform CYP1A2
-
Fuhr, U.; Strobl, G.; Manaut, F.; Anders, E.-M.; Sorgel, F.; Lopez de Brinas, E.; Chu, D. T. W.; Pernet, A. G.; Mahr, G.; Sanz, F.; Staib, A. H. Quinolone antibacterial agents: relationship between structure and in vitro inhibition of human cytochrome P450 isoform CYP1A2. Mol. Pharmacol. 1993, 43, 191-199.
-
(1993)
Mol. Pharmacol.
, vol.43
, pp. 191-199
-
-
Fuhr, U.1
Strobl, G.2
Manaut, F.3
Anders, E.-M.4
Sorgel, F.5
Lopez de Brinas, E.6
Chu, D.T.W.7
Pernet, A.G.8
Mahr, G.9
Sanz, F.10
Staib, A.H.11
-
132
-
-
0028007232
-
Theoretical study on the metabolism of caffeine by cytochrome P-450 1A2 and its inhibition
-
Sanz, F.; López-de-Briñaz, E.; Rodríguez, J.; Manaut, F. Theoretical study on the metabolism of caffeine by cytochrome P-450 1A2 and its inhibition. Quant. Struct.-Act. Relat. 1994 13, 281-284.
-
(1994)
Quant. Struct.-Act. Relat.
, vol.13
, pp. 281-284
-
-
Sanz, F.1
López-de-Briñaz, E.2
Rodríguez, J.3
Manaut, F.4
-
133
-
-
0032499398
-
Structure-related inhibition of human hepatic caffeine N3-demethylation by naturally occurring flavaoids
-
Lee, H.; Yeom, H.; Kim, Y. G.; Yoon, C. N.; Jin, C.; Choi, J. S.; Kim, B.-R.; Kim, D.-H. Structure-related inhibition of human hepatic caffeine N3-demethylation by naturally occurring flavaoids. Biochem. Pharmacol. 1998, 55, 1369-1375.
-
(1998)
Biochem. Pharmacol.
, vol.55
, pp. 1369-1375
-
-
Lee, H.1
Yeom, H.2
Kim, Y.G.3
Yoon, C.N.4
Jin, C.5
Choi, J.S.6
Kim, B.-R.7
Kim, D.-H.8
-
134
-
-
0034050042
-
3D-QSAR methods on the basis of ligand-receptor complexes. Application of COMBINE and GRID/GOLPE methodologies to a series of CYP1A2 ligands
-
Lozano, J. J.; Pastor, M.; Cruciani, G.; Gaedt, K.; Centeno, N. B.; Gago, F.; Sanz, F. 3D-QSAR methods on the basis of ligand-receptor complexes. Application of COMBINE and GRID/GOLPE methodologies to a series of CYP1A2 ligands. J. Comput.-Aided Mol. Des. 2000, 14, 341-353.
-
(2000)
J. Comput.-Aided Mol. Des.
, vol.14
, pp. 341-353
-
-
Lozano, J.J.1
Pastor, M.2
Cruciani, G.3
Gaedt, K.4
Centeno, N.B.5
Gago, F.6
Sanz, F.7
-
135
-
-
0033967525
-
Theoretical investigation of substrate specificity for cytochromes P450 IA2, P450 IID6 and P450 IIIA4
-
de Rienzo, F.; Fanelli, F.; Menziani, M, C.; de Benedetti, P. G. Theoretical investigation of substrate specificity for cytochromes P450 IA2, P450 IID6 and P450 IIIA4. J. Comput.-Aided Mol. Des. 2000, 14, 93-116.
-
(2000)
J. Comput.-Aided Mol. Des.
, vol.14
, pp. 93-116
-
-
de Rienzo, F.1
Fanelli, F.2
Menziani, M.C.3
de Benedetti, P.G.4
-
136
-
-
10644252366
-
Pharmacophore development for the interaction of cytochrome P450 1A2 with its substrates and inhibitors
-
Gundertofte, K.; Jørgensen, F. S. Ed.; Kluwer Academic/Plenum Publishers, New York
-
López de Briñaz, E.; Lozano, J. J.; Centeno, N. B.; Segura, J.; González, M.; de la Torre, R.; Sanz, F. Pharmacophore development for the interaction of cytochrome P450 1A2 with its substrates and inhibitors., In Molecular Modeling and Prediction of Bioactivity.; Gundertofte, K.; Jørgensen, F. S. Ed.; Kluwer Academic/Plenum Publishers, New York, 2000; pp 141-146.
-
(2000)
Molecular Modeling and Prediction of Bioactivity
, pp. 141-146
-
-
López de Briñaz, E.1
Lozano, J.J.2
Centeno, N.B.3
Segura, J.4
González, M.5
de la Torre, R.6
Sanz, F.7
-
137
-
-
0028357810
-
Approach to detect substrates suitable to measure the coumarin 7-hydroxylase (Cyp 2a5) -structure activity relationships
-
Tegtmeier, M.; Legrum, W. Approach to detect substrates suitable to measure the coumarin 7-hydroxylase (Cyp 2a5) -structure activity relationships. Arch. Pharm. 1994, 327, 299-302.
-
(1994)
Arch. Pharm.
, vol.327
, pp. 299-302
-
-
Tegtmeier, M.1
Legrum, W.2
-
138
-
-
0029562304
-
Comparative molecular field analysis of compounds with CYP2A5 binding affinity
-
Poso, A.; Juvonen, R.; Gynther, J. Comparative molecular field analysis of compounds with CYP2A5 binding affinity. Quant. Struct.-Act. Relat. 1995, 14, 507-511.
-
(1995)
Quant. Struct.-Act. Relat.
, vol.14
, pp. 507-511
-
-
Poso, A.1
Juvonen, R.2
Gynther, J.3
-
139
-
-
0035099265
-
A comparative molecular field analysis of cytochrome P450 2A5 and 2A6 inhibitors
-
Poso, A.; Gynther, J.; Juvonen, R. A comparative molecular field analysis of cytochrome P450 2A5 and 2A6 inhibitors. J. Comput.-Aided Mol. Des. 2001, 15, 195-202.
-
(2001)
J. Comput.-Aided Mol. Des.
, vol.15
, pp. 195-202
-
-
Poso, A.1
Gynther, J.2
Juvonen, R.3
-
140
-
-
0036908769
-
Quantitative structure-activity relationship (QSAR) and three-dimensional QSAR analysis of a series of xanthates as inhibitors of cytochrome P450 2B1
-
Lesigiarska, I.; Pajeva, I.; Yanev, S. Quantitative structure-activity relationship (QSAR) and three-dimensional QSAR analysis of a series of xanthates as inhibitors of cytochrome P450 2B1. Xenobiotica 2002, 32, 1063-1077.
-
(2002)
Xenobiotica
, vol.32
, pp. 1063-1077
-
-
Lesigiarska, I.1
Pajeva, I.2
Yanev, S.3
-
141
-
-
0032910377
-
5 binding site and comparisons with CYP2B1 and CYP2B4
-
5 binding site and comparisons with CYP2B1 and CYP2B4. Xenobiotica 1999, 29, 361-393.
-
(1999)
Xenobiotica
, vol.29
, pp. 361-393
-
-
Lewis, D.F.V.1
Lake, B.G.2
Dickins, M.3
Edershaw, P.J.4
Tarbit, M.H.5
Goldfarb, P.S.6
-
142
-
-
0032964028
-
Three-dimensional quantitative structure activity relationship analyses of substrates of CYP2B6
-
Ekins, S.; Bravi, G.; Ring, B. J.; Gillespie, T. A.; Gillespie, J. S.; Vandenbranden, M.; Wrighton, S. A.; Winkel, J. H. Three-dimensional quantitative structure activity relationship analyses of substrates of CYP2B6. J. Pharmacol. Exp. Ther. 1999, 288, 21-29.
-
(1999)
J. Pharmacol. Exp. Ther.
, vol.288
, pp. 21-29
-
-
Ekins, S.1
Bravi, G.2
Ring, B.J.3
Gillespie, T.A.4
Gillespie, J.S.5
Vandenbranden, M.6
Wrighton, S.A.7
Winkel, J.H.8
-
143
-
-
0035935677
-
Analysis of selective regions in the active sites of human cytochromes P450 2C8, 2C9, 2C18, and 2C19 homology models using GRID/CPCA
-
Ridderström, M.; Zamora, I.; Fjellström, O.; Andersson, T. B. Analysis of selective regions in the active sites of human cytochromes P450 2C8, 2C9, 2C18, and 2C19 homology models using GRID/CPCA. J. Med. Chem. 2001, 44, 4072-4081.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 4072-4081
-
-
Ridderström, M.1
Zamora, I.2
Fjellström, O.3
Andersson, T.B.4
-
144
-
-
0001593926
-
Putative active site model for P4502C9 (tolbutamide hydroxylase)
-
Jones, B. C.; Hawksworth, G.; Horne, V. A.; Newlands, A.; Tute, M. S.; Smith, D. A. Putative active site model for P4502C9 (tolbutamide hydroxylase). Br. J. Clin. Pharmacol. 1993, 34, P143-P144.
-
(1993)
Br. J. Clin. Pharmacol.
, vol.34
-
-
Jones, B.C.1
Hawksworth, G.2
Horne, V.A.3
Newlands, A.4
Tute, M.S.5
Smith, D.A.6
-
145
-
-
0030456054
-
Interactions of sulfaphenazole derivatives with human liver cytochromes P450 2C: Molecular origin of the specific inhibitory effects of sulfaphenazole on CYP2C9 and consequences for the substrate binding site topology of CYP2C9
-
Mancy, A.; Dijols, S.; Poli, S.; Guengerich, F. P.; Mansuy, D. Interactions of sulfaphenazole derivatives with human liver cytochromes P450 2C: Molecular origin of the specific inhibitory effects of sulfaphenazole on CYP2C9 and consequences for the substrate binding site topology of CYP2C9. Biochemistry 1996, 35, 16205-16212.
-
(1996)
Biochemistry
, vol.35
, pp. 16205-16212
-
-
Mancy, A.1
Dijols, S.2
Poli, S.3
Guengerich, F.P.4
Mansuy, D.5
-
146
-
-
0030041933
-
Putative active site template model for cytochrome P4502C9 (Tolbutamide hydroxylase)
-
Jones, B. C.; Hawksworth, G.; Horne, V. A.; Newlands, A.; Morsman, J.; Tute, M. S.; Smith, D. A. Putative active site template model for cytochrome P4502C9 (Tolbutamide hydroxylase). Drug Metab. Dispos. 1996, 24, 260-266.
-
(1996)
Drug Metab. Dispos.
, vol.24
, pp. 260-266
-
-
Jones, B.C.1
Hawksworth, G.2
Horne, V.A.3
Newlands, A.4
Morsman, J.5
Tute, M.S.6
Smith, D.A.7
-
147
-
-
0033856020
-
Three- and four-dimensional-quantitative structure activity relationship (3D / 4D-QSAR) analyses of CYP2C9 inhibitors
-
Ekins, S.; Bravi, G.; Binkley, S.; Gillespie, J. S.; Ring, B. J.; Winkel, J. H.; Wrighton, S. A. Three- and four-dimensional-quantitative structure activity relationship (3D / 4D-QSAR) analyses of CYP2C9 inhibitors. Drug Metab. Dispos. 2000 28, 994-1002.
-
(2000)
Drug Metab. Dispos.
, vol.28
, pp. 994-1002
-
-
Ekins, S.1
Bravi, G.2
Binkley, S.3
Gillespie, J.S.4
Ring, B.J.5
Winkel, J.H.6
Wrighton, S.A.7
-
149
-
-
0842304425
-
Conformer- and alignment-independent model for predicting structurally diverse competitive CYP2C9 inhibitors
-
Afzelius, L.; Zamora, I.; Masimirembwa, C. M.; Karlén, A.; Andersson, T. B.; Mecucci, S.; Baroni, M.; Cruciani, G. Conformer- and alignment-independent model for predicting structurally diverse competitive CYP2C9 inhibitors. J. Med. Chem. 2004, 47, 907-914.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 907-914
-
-
Afzelius, L.1
Zamora, I.2
Masimirembwa, C.M.3
Karlén, A.4
Andersson, T.B.5
Mecucci, S.6
Baroni, M.7
Cruciani, G.8
-
150
-
-
2642518851
-
Quantitative binding models for CYP2C9 based on benzbromaron analogues
-
Locuson, C. W.; Rock, D. A.; Jones, J. P. Quantitative binding models for CYP2C9 based on benzbromaron analogues. Biochemistry 2004, 43, 6948-6958.
-
(2004)
Biochemistry
, vol.43
, pp. 6948-6958
-
-
Locuson, C.W.1
Rock, D.A.2
Jones, J.P.3
-
151
-
-
0021884394
-
Substrate specificity of human liver cytochrome P-450 debrisoquine hydroxylase probed using immunochemical inhibition and chemical modeling
-
Wolff, T.; Distlerath, L. M.; Worthington, M. T.; Groopman, J. D.; Hammons, G. J.; Kadlubar, F. F.; Prough, R. A.; Martin, M. V.; Guengerich, F. P. Substrate specificity of human liver cytochrome P-450 debrisoquine hydroxylase probed using immunochemical inhibition and chemical modeling. Cancer Res. 1985, 45, 2116-2122.
-
(1985)
Cancer Res.
, vol.45
, pp. 2116-2122
-
-
Wolff, T.1
Distlerath, L.M.2
Worthington, M.T.3
Groopman, J.D.4
Hammons, G.J.5
Kadlubar, F.F.6
Prough, R.A.7
Martin, M.V.8
Guengerich, F.P.9
-
152
-
-
0022273620
-
The 2.6-Å crystal structure of Pseudomonas putida cytochrome P-450
-
Poulos, T. L.; Finzel, B. C.; Gunsalus, I. C.; Wagner, G. C.; Kraut, J. The 2.6-Å crystal structure of Pseudomonas putida cytochrome P-450. J. Biol. Chem. 1985, 260, 16122-16130.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 16122-16130
-
-
Poulos, T.L.1
Finzel, B.C.2
Gunsalus, I.C.3
Wagner, G.C.4
Kraut, J.5
-
153
-
-
10644226490
-
Entwicklung von strukturmodellen für substrate und inhibitoren von cytochrom P-450IID1 mit hilfe von molecular modeling und in-vitro-hemmungsmessungen
-
Thesis, GSF Forschungszentrum für Umwelt und Gesundheit GmbH
-
Strobl, G., Thesis, Entwicklung von strukturmodellen für substrate und inhibitoren von cytochrom P-450IID1 mit hilfe von molecular modeling und in-vitro-hemmungsmessungen., GSF Forschungszentrum für Umwelt und Gesundheit GmbH, 1991.
-
(1991)
-
-
Strobl, G.1
-
154
-
-
0027314831
-
Development of a pharmacophore for inhibition of human liver cytochrome P-450 2D6: Molecular modelling and inhibition studies
-
Strobl, G. R.; von Kreudener, S.; Stöckigt, J.; Guengerich, F. P.; Wolff, T. Development of a pharmacophore for inhibition of human liver cytochrome P-450 2D6: molecular modelling and inhibition studies. J. Med. Chem. 1993, 36, 1136-1145.
-
(1993)
J. Med. Chem.
, vol.36
, pp. 1136-1145
-
-
Strobl, G.R.1
von Kreudener, S.2
Stöckigt, J.3
Guengerich, F.P.4
Wolff, T.5
-
155
-
-
0029008593
-
Computer prediction and experimental validation of cytochrome P450-2D6 dependent oxidation of GBR 12909 (1-[2-[bis(4-fluorophenyl)methoxy]ethyl]-4-(3-phenylpropyl)piperazine)
-
de Groot, M. J.; Bijloo, G. J.; Hansen, K. T.; Vermeulen, N. P. E. Computer prediction and experimental validation of cytochrome P450-2D6 dependent oxidation of GBR 12909 (1-[2-[bis(4-fluorophenyl)methoxy]ethyl]-4-(3-phenylpropyl)piperazine). Drug Metab. Dispos. 1995, 23, 667-669.
-
(1995)
Drug Metab. Dispos.
, vol.23
, pp. 667-669
-
-
de Groot, M.J.1
Bijloo, G.J.2
Hansen, K.T.3
Vermeulen, N.P.E.4
-
156
-
-
0030980968
-
Extension of a predictive substrate model for human cytochrome P4502D6
-
de Groot, M. J.; Bijloo, G. J.; van Acker, F. A. A.; Fonseca Guerra, C.; Snijders, J. G.; Vermeulen, N. P. E. Extension of a predictive substrate model for human cytochrome P4502D6. Xenobiotica 1997, 27, 357-368.
-
(1997)
Xenobiotica
, vol.27
, pp. 357-368
-
-
de Groot, M.J.1
Bijloo, G.J.2
van Acker, F.A.A.3
Fonseca Guerra, C.4
Snijders, J.G.5
Vermeulen, N.P.E.6
-
157
-
-
0029995711
-
A three-dimensional protein model for human cytochrome P450 2D6 based on the crystal structures of P450 101, P450 102 and P450 108
-
de Groot, M. J.; Vermeulen, N. P. E.; Kramer, J. D.; van Acker, F. A. A.; Donné-Op den Kelder, G. M. A three-dimensional protein model for human cytochrome P450 2D6 based on the crystal structures of P450 101, P450 102 and P450 108. Chem. Res. Toxicol. 1996, 9, 1079-1091.
-
(1996)
Chem. Res. Toxicol.
, vol.9
, pp. 1079-1091
-
-
de Groot, M.J.1
Vermeulen, N.P.E.2
Kramer, J.D.3
van Acker, F.A.A.4
Donné-Op den Kelder, G.M.5
-
158
-
-
0032876070
-
Design, synthesis, and characterization of 7-methoxy-4-(aminomethyl)coumarin as a novel and selective cytochrome P450 2D6 substrate suitable for high-throughput screening
-
Onderwater, R. C.; Venhorst, J.; Commandeur, J. N. M.; Vermeulen, N. P. E. Design, synthesis, and characterization of 7-methoxy-4-(aminomethyl)coumarin as a novel and selective cytochrome P450 2D6 substrate suitable for high-throughput screening. Chem. Res. Toxicol. 1999, 12, 555-559.
-
(1999)
Chem. Res. Toxicol.
, vol.12
, pp. 555-559
-
-
Onderwater, R.C.1
Venhorst, J.2
Commandeur, J.N.M.3
Vermeulen, N.P.E.4
-
159
-
-
0034031910
-
Regioselective hydroxylation of debrisoquine by cytochrome P450 2D6: Implications for active site modeling
-
Lightfoot, T.; Ellis, S. W.; Mahling, J.; Ackland, M. J.; Blaney, F. E.; Bijloo, G. J.; de Groot, M. J.; Vermeulen, N. P. E.; Blackburn, G. M.; Lennard, M. S.; Tucker, G. T. Regioselective hydroxylation of debrisoquine by cytochrome P450 2D6: implications for active site modeling. Xenobiotica 2000, 30, 219-233.
-
(2000)
Xenobiotica
, vol.30
, pp. 219-233
-
-
Lightfoot, T.1
Ellis, S.W.2
Mahling, J.3
Ackland, M.J.4
Blaney, F.E.5
Bijloo, G.J.6
de Groot, M.J.7
Vermeulen, N.P.E.8
Blackburn, G.M.9
Lennard, M.S.10
Tucker, G.T.11
-
160
-
-
0031012810
-
A refined substrate model for human cytochrome P450 2D6
-
de Groot, M. J.; Bijloo, G. J.; Martens, B. J.; van Acker, F. A. A.; Vermeulen, N. P. E. A refined substrate model for human cytochrome P450 2D6. Chem. Res. Toxicol. 1997, 10, 41-48.
-
(1997)
Chem. Res. Toxicol.
, vol.10
, pp. 41-48
-
-
de Groot, M.J.1
Bijloo, G.J.2
Martens, B.J.3
van Acker, F.A.A.4
Vermeulen, N.P.E.5
-
161
-
-
0034902212
-
Application of in silico approaches to predicting drug-drug interactions
-
Ekins, S.; Wrighton, S. A. Application of in silico approaches to predicting drug-drug interactions. J. Pharmacol. Toxicol. Methods 2001, 45, 65-69.
-
(2001)
J. Pharmacol. Toxicol. Methods
, vol.45
, pp. 65-69
-
-
Ekins, S.1
Wrighton, S.A.2
-
162
-
-
0032849040
-
Three and four dimensional-quantitative structure activity relationship (31) / 4D-QSAR) analyses of CYP2D6 inhibitors
-
Ekins, S.; Bravi, G.; Binkley, S.; Gillespie, J. S.; Ring, B. J.; Winkel, J. H.; Wrighton, S. A. Three and four dimensional-quantitative structure activity relationship (31) / 4D-QSAR) analyses of CYP2D6 inhibitors. Pharmacogenetics 1999, 9 477-489.
-
(1999)
Pharmacogenetics
, vol.9
, pp. 477-489
-
-
Ekins, S.1
Bravi, G.2
Binkley, S.3
Gillespie, J.S.4
Ring, B.J.5
Winkel, J.H.6
Wrighton, S.A.7
-
163
-
-
0030056293
-
Modeling the cytochrome P450-mediated metabolism of chlorinated volatile organic compounds
-
Waller, C. L.; Evans, M. V.; McKinney, J. D. Modeling the cytochrome P450-mediated metabolism of chlorinated volatile organic compounds. Drug Metab. Dispos. 1996, 24, 203-210.
-
(1996)
Drug Metab. Dispos.
, vol.24
, pp. 203-210
-
-
Waller, C.L.1
Evans, M.V.2
McKinney, J.D.3
-
164
-
-
0034673982
-
Conformational modulation of human cytochrome P450 2E1 by ethanol and other substrates: A CO flash photolysis study
-
Smith, S. V.; Koley, A. P.; Dai, R.; Robinson, R. C.; Leong, H.; Markowitz, A.; Friedman, F. K. Conformational modulation of human cytochrome P450 2E1 by ethanol and other substrates: a CO flash
-
(2000)
Biochemistry
, vol.39
, pp. 5731-5737
-
-
Smith, S.V.1
Koley, A.P.2
Dai, R.3
Robinson, R.C.4
Leong, H.5
Markowitz, A.6
Friedman, F.K.7
-
165
-
-
0032822383
-
Three-dimensional-quantitative structure activity relationship analysis of cytochrome P-450 3A4 substrates
-
Ekins, S.; Bravi, G.; Wikel, J. H.; Wrighton, S. A. Three-dimensional-quantitative structure activity relationship analysis of cytochrome P-450 3A4 substrates. J. Pharmacol. Exp. Ther. 1999, 291, 424-433.
-
(1999)
J. Pharmacol. Exp. Ther.
, vol.291
, pp. 424-433
-
-
Ekins, S.1
Bravi, G.2
Wikel, J.H.3
Wrighton, S.A.4
-
166
-
-
0033011395
-
Three dimensional-quantitative structure activity relationship (3D-QSAR) analyses of inhibitors for CYP3A4
-
Ekins, S.; Bravi, G.; Binkley, S.; Gillespie, J. S.; Ring, B. J.; Wikel, J. H.; Wrighton, S. A. Three dimensional-quantitative structure activity relationship (3D-QSAR) analyses of inhibitors for CYP3A4. J. Pharmacol. Exp. Ther. 1999, 290, 429-438.
-
(1999)
J. Pharmacol. Exp. Ther.
, vol.290
, pp. 429-438
-
-
Ekins, S.1
Bravi, G.2
Binkley, S.3
Gillespie, J.S.4
Ring, B.J.5
Wikel, J.H.6
Wrighton, S.A.7
-
167
-
-
0025134337
-
Screening for inducers and inhibitors of cytochrome P-450 (cyclosporin A oxidase) in primary cultures of human hepatocytes and in liver microsomes
-
Pichard, L.; Fabre, I.; Fabre, G.; Domergue, J.; Aubert, B. S.; Mourad, G.; Maurel, P. Screening for inducers and inhibitors of cytochrome P-450 (cyclosporin A oxidase) in primary cultures of human hepatocytes and in liver microsomes. Drug Metab. Dispos. 1990 18, 595-606.
-
(1990)
Drug Metab. Dispos.
, vol.18
, pp. 595-606
-
-
Pichard, L.1
Fabre, I.2
Fabre, G.3
Domergue, J.4
Aubert, B.S.5
Mourad, G.6
Maurel, P.7
-
168
-
-
0029876284
-
Metabolism of the new immunosuppressor cyclosporin G by human liver cytochromes P450
-
Pichard, L.; Domergue, J.; Fourtanier, G.; Koch, P.; Schran, H. F.; Maurel, P. Metabolism of the new immunosuppressor cyclosporin G by human liver cytochromes P450. Biochem. Pharmacol. 1996, 51 591-598.
-
(1996)
Biochem. Pharmacol.
, vol.51
, pp. 591-598
-
-
Pichard, L.1
Domergue, J.2
Fourtanier, G.3
Koch, P.4
Schran, H.F.5
Maurel, P.6
-
169
-
-
0030665573
-
Metabolic interactions of selected antimalarial and non-antimalarial drugs with the major pathway (3-hydroxylation) of quinine in human liver microsomes
-
Zhao, X.-J.; Ishizaki, T. Metabolic interactions of selected antimalarial and non-antimalarial drugs with the major pathway (3-hydroxylation) of quinine in human liver microsomes. Br. J. Clin. Pharmacol. 1997, 44, 505-511.
-
(1997)
Br. J. Clin. Pharmacol.
, vol.44
, pp. 505-511
-
-
Zhao, X.-J.1
Ishizaki, T.2
-
170
-
-
0037431382
-
A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules
-
Singh, S. B.; Shen, L. Q.; Walker, M. J.; Sheridan, R. P. A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules. J. Med. Chem. 2003, 46, 1330-1336.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 1330-1336
-
-
Singh, S.B.1
Shen, L.Q.2
Walker, M.J.3
Sheridan, R.P.4
-
171
-
-
0038778340
-
Three dimensional pharmacophore modeling of human CYP17 inhibitors. Potential agents for prostate cancer therapy
-
Clement, O. O.; Freeman, C. M.; Hartmann, R. W.; Handratta, V. D.; Vasaitis, T. S.; Brodie, A. M. H.; Njar, V. C. O. Three dimensional pharmacophore modeling of human CYP17 inhibitors. Potential agents for prostate cancer therapy. J. Med. Chem. 2003, 46 2345-2351.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 2345-2351
-
-
Clement, O.O.1
Freeman, C.M.2
Hartmann, R.W.3
Handratta, V.D.4
Vasaitis, T.S.5
Brodie, A.M.H.6
Njar, V.C.O.7
-
172
-
-
0028501717
-
Molecular shape and QSAR analyses of a family of substituted dichlorodiphenyl aromatase inhibitors
-
Nagy, P. I.; Tokarski, J.; Hopfinger, A. J. Molecular shape and QSAR analyses of a family of substituted dichlorodiphenyl aromatase inhibitors. J. Chem. Inf. Comput. Sci. 1994, 34, 1190-1197.
-
(1994)
J. Chem. Inf. Comput. Sci.
, vol.34
, pp. 1190-1197
-
-
Nagy, P.I.1
Tokarski, J.2
Hopfinger, A.J.3
-
173
-
-
0030159247
-
Three-dimensional quantitative structure-activity relationships of steroid inhibitors
-
Oprea, T. I.; Garcia, A. E. Three-dimensional quantitative structure-activity relationships of steroid inhibitors. J. Comput.-Aided Mol. Des. 1996, 10, 186-200.
-
(1996)
J. Comput.-Aided Mol. Des.
, vol.10
, pp. 186-200
-
-
Oprea, T.I.1
Garcia, A.E.2
-
174
-
-
0030076102
-
Comparative molecular field analysis of non steroidal aromatase inhibitors related to fadrozole
-
Recanatini, M. Comparative molecular field analysis of non steroidal aromatase inhibitors related to fadrozole. J. Comput.-Aided Mol. Des. 1996, 10, 74-82.
-
(1996)
J. Comput.-Aided Mol. Des.
, vol.10
, pp. 74-82
-
-
Recanatini, M.1
-
175
-
-
0032053436
-
Comparative molecular field analysis of non-steroidal aromatase inhibitors: An extended model for two different structural classes
-
Recanatini, M.; Cavalli, A. Comparative molecular field analysis of non-steroidal aromatase inhibitors: an extended model for two different structural classes. Bioorg. Med. Chem. 1998, 6 377-388.
-
(1998)
Bioorg. Med. Chem.
, vol.6
, pp. 377-388
-
-
Recanatini, M.1
Cavalli, A.2
-
176
-
-
0033757280
-
Linking ComFA and protein homology models of enzyme-inhibitor interactions: An application to non-steroidal aromatase inhibitors
-
Cavalli, A.; Greco, G.; Novellino, E.; Recanatini, M. Linking ComFA and protein homology models of enzyme-inhibitor interactions: an application to non-steroidal aromatase inhibitors. Bioorg. Med. Chem. 2000, 8, 2771-2780.
-
(2000)
Bioorg. Med. Chem.
, vol.8
, pp. 2771-2780
-
-
Cavalli, A.1
Greco, G.2
Novellino, E.3
Recanatini, M.4
-
177
-
-
10644277588
-
-
Tripos Inc., 1699 South Hanley Rd., St. Louis, Missouri 63144 USA, Alchemy® 2000, Version 2000
-
Tripos Inc., 1699 South Hanley Rd., St. Louis, Missouri 63144 USA, Alchemy® 2000, 2000, Version 2000.
-
(2000)
-
-
-
178
-
-
10644261012
-
-
The Scripps Research Institute, La Jolla, California CA 92037-5025 USA, AutoDock 2.4., Version 2.42
-
The Scripps Research Institute, La Jolla, California CA 92037-5025 USA, AutoDock 2.4., 1997, Version 2.42.
-
(1997)
-
-
-
179
-
-
10644290532
-
-
Accelrys Inc., San Diego, CA 92121-3752 USA, ChemX, version 2000.1
-
Accelrys Inc., San Diego, CA 92121-3752 USA, ChemX, 2000, version 2000.1.
-
(2000)
-
-
-
180
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
Kuntz, I. D.; Blaney, J. M.; Oatley, S. J.; Langridge, R.; Ferrin, T. E. A geometric approach to macromolecule-ligand interactions. J. Mol. Biol. 1982, 161, 269-288.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
181
-
-
0035025191
-
DOCK 4.0: Search strategies for automated docking of flexible molecule databases
-
Ewing, T. J. A.; Makino, S.; Skillman, A. G.; Kunz, I. D. DOCK 4.0: Search strategies for automated docking of flexible molecule databases. J. Comp.-Aided Molec. Design 2001, 15, 411-428.
-
(2001)
J. Comp.-Aided Molec. Design
, vol.15
, pp. 411-428
-
-
Ewing, T.J.A.1
Makino, S.2
Skillman, A.G.3
Kunz, I.D.4
-
182
-
-
10644230617
-
-
University of California, San Francisco, USA, DOCK, version 5
-
University of California, San Francisco, USA, DOCK, 2002, version 5.
-
(2002)
-
-
-
183
-
-
10644274039
-
-
CCDC Software, 12 Union Rd, Cambridge CB2 1E2 UK, Gold, version 1.2
-
CCDC Software, 12 Union Rd, Cambridge CB2 1E2 UK, Gold, 2000, version 1.2.
-
(2000)
-
-
-
184
-
-
10644264866
-
-
SAS Institute, Carey, NC, USA, SAS, version 5.18
-
SAS Institute, Carey, NC, USA, SAS, 1986, version 5.18.
-
(1986)
-
-
-
185
-
-
0030036211
-
Molecular modelling of CYP1A subfamily members based on an alignment with CYP102: Rationalization of CYP1A substrate specificity in terms of active site amino acid residues
-
Lewis, D. F. V.; Lake, B. G. Molecular modelling of CYP1A subfamily members based on an alignment with CYP102: rationalization of CYP1A substrate specificity in terms of active site amino acid residues. Xenobiotica 1996, 26, 723-753.
-
(1996)
Xenobiotica
, vol.26
, pp. 723-753
-
-
Lewis, D.F.V.1
Lake, B.G.2
-
186
-
-
0036805854
-
Molecular modeling of cytochrome P450 1A1: Enzyme-substrate interactions and substrate binding affinities
-
Szklarz, G. D.; Paulsen, M. D. Molecular modeling of cytochrome P450 1A1: enzyme-substrate interactions and substrate binding affinities. J. Biomolec. Struct. Dynam. 2002, 20, 155-162.
-
(2002)
J. Biomolec. Struct. Dynam.
, vol.20
, pp. 155-162
-
-
Szklarz, G.D.1
Paulsen, M.D.2
-
187
-
-
0037377894
-
Characterization of substrate binding to cytochrome P450 1A1 using molecular modeling and kinetic analyses: Case of residue 382
-
Liu, J.; Ericksen, S. S.; Besspiata, D.; Fisher, C. W.; Szklarz, G. D. Characterization of substrate binding to cytochrome P450 1A1 using molecular modeling and kinetic analyses: case of residue 382. Drug Metab. Dispos. 2003, 31, 412-420.
-
(2003)
Drug Metab. Dispos.
, vol.31
, pp. 412-420
-
-
Liu, J.1
Ericksen, S.S.2
Besspiata, D.3
Fisher, C.W.4
Szklarz, G.D.5
-
188
-
-
0037354217
-
Homology modelling of human CYP1A2 based on the CYP2C5 crystallographic template structure
-
Lewis, D. F. V.; Lake, B. G.; Dickins, M.; Ueng, Y.-F.; Goldfarb, P. S. Homology modelling of human CYP1A2 based on the CYP2C5 crystallographic template structure. Xenobiotica 2003, 33 239-254.
-
(2003)
Xenobiotica
, vol.33
, pp. 239-254
-
-
Lewis, D.F.V.1
Lake, B.G.2
Dickins, M.3
Ueng, Y.-F.4
Goldfarb, P.S.5
-
189
-
-
0029088125
-
Molecular modelling of members of the P4502A subfamily: Application to studies of enzyme specificity
-
Lewis, D. F. V.; Lake, B. G. Molecular modelling of members of the P4502A subfamily: application to studies of enzyme specificity. Xenobiotica 1995, 25, 585-598.
-
(1995)
Xenobiotica
, vol.25
, pp. 585-598
-
-
Lewis, D.F.V.1
Lake, B.G.2
-
190
-
-
0028118315
-
Application of 3-dimensional homology modeling of cytochrome P450 2B1 for interpretation of site-directed mutagenesis results
-
Szklarz, G. D.; Ornstein, R. L.; Halpert, J. P. Application of 3-dimensional homology modeling of cytochrome P450 2B1 for interpretation of site-directed mutagenesis results. J. Biomol. Struct. Dyn. 1994, 12, 61-78.
-
(1994)
J. Biomol. Struct. Dyn.
, vol.12
, pp. 61-78
-
-
Szklarz, G.D.1
Ornstein, R.L.2
Halpert, J.P.3
-
191
-
-
0037931781
-
A rational approach to re-engineer cytochrome P450 2B1 regioselectivity based on the crystal structure of P450 2C5
-
Kumar, S.; Scott, E. E.; Liu, H.; Halpert, J. R. A rational approach to re-engineer cytochrome P450 2B1 regioselectivity based on the crystal structure of P450 2C5. J. Biol. Chem. 2003, 278 17178-17184.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 17178-17184
-
-
Kumar, S.1
Scott, E.E.2
Liu, H.3
Halpert, J.R.4
-
192
-
-
54749150142
-
Molecular modeling of cytochrome P450 2B1: Mode of membrane insertion and substrate specificity
-
Dai, R.; Pincus, M. R.; Friedman, F. K. Molecular modeling of cytochrome P450 2B1: mode of membrane insertion and substrate specificity. J. Protein Chem. 1998, 17, 121-129.
-
(1998)
J. Protein Chem.
, vol.17
, pp. 121-129
-
-
Dai, R.1
Pincus, M.R.2
Friedman, F.K.3
-
193
-
-
0030963222
-
Molecular modeling of mammalian CYP2B isoforms and their interaction with substrates, inhibitors and redox partners
-
Lewis, D. F. V.; Lake, B. G. Molecular modeling of mammalian CYP2B isoforms and their interaction with substrates, inhibitors and redox partners. Xenobiotica 1997, 27, 443-478.
-
(1997)
Xenobiotica
, vol.27
, pp. 443-478
-
-
Lewis, D.F.V.1
Lake, B.G.2
-
194
-
-
0031049537
-
Construction of a 3D model of cytochrome P450 2B4
-
Chang, Y. T.; Stiffelman, O. B.; Vakser, I. A.; Loew, G. H.; Bridges, A.; Waskell, L. Construction of a 3D model of cytochrome P450 2B4. Prot. Eng. 1997, 10, 119-129.
-
(1997)
Prot. Eng.
, vol.10
, pp. 119-129
-
-
Chang, Y.T.1
Stiffelman, O.B.2
Vakser, I.A.3
Loew, G.H.4
Bridges, A.5
Waskell, L.6
-
195
-
-
0036974275
-
Regioselectivity of CYP2B6: Homology modeling, molecular dynamics simulation, docking
-
Bathelt, C.; Schmid, R. D.; Pleiss, J. Regioselectivity of CYP2B6: homology modeling, molecular dynamics simulation, docking. J. Mol. Model. 2002, 8, 327-335.
-
(2002)
J. Mol. Model.
, vol.8
, pp. 327-335
-
-
Bathelt, C.1
Schmid, R.D.2
Pleiss, J.3
-
196
-
-
0032742735
-
Homology modeling and substrate binding study of human CYP2C9 enzyme
-
Payne, V. A.; Chang, Y.-T.; Loew, G. H. Homology modeling and substrate binding study of human CYP2C9 enzyme. Proteins Struct. Funct. Genet. 1999, 37, 176-190.
-
(1999)
Proteins Struct. Funct. Genet.
, vol.37
, pp. 176-190
-
-
Payne, V.A.1
Chang, Y.-T.2
Loew, G.H.3
-
197
-
-
0031934315
-
Molecular modelling of human CYP2C subfamily enzymes CYP2C9 and CYP2C19: Rationalization of enzyme specificity and site-directed mutagenesis experiments in the CYP2C subfamily
-
Lewis, D. F. V.; Dickins, M.; Weaver, R. J.; Eddershaw, P. J.; Goldfarb, P. S.; Tarbit, M. H. Molecular modelling of human CYP2C subfamily enzymes CYP2C9 and CYP2C19: rationalization of enzyme specificity and site-directed mutagenesis experiments in the CYP2C subfamily. Xenobiotica 1998, 28, 235-268.
-
(1998)
Xenobiotica
, vol.28
, pp. 235-268
-
-
Lewis, D.F.V.1
Dickins, M.2
Weaver, R.J.3
Eddershaw, P.J.4
Goldfarb, P.S.5
Tarbit, M.H.6
-
198
-
-
0032744799
-
Homology modeling and substrate binding study of human CYP2C18 and CYP2C19 enzymes
-
Payne, V. A.; Chang, Y.-T.; Loew, G. H. Homology modeling and substrate binding study of human CYP2C18 and CYP2C19 enzymes. Proteins Struct. Funct. Genet. 1999, 37, 204-217.
-
(1999)
Proteins Struct. Funct. Genet.
, vol.37
, pp. 204-217
-
-
Payne, V.A.1
Chang, Y.-T.2
Loew, G.H.3
-
199
-
-
0030914738
-
Molecular modelling of cytochrome P4502D6 (CYP2D6) based on an alignment with CYP102: Structural studies on specific CYP2D6 substrate metabolism
-
Lewis, D. F. V.; Eddershaw, P. J.; Goldfarb, P. S.; Tarbit, M. H. Molecular modelling of cytochrome P4502D6 (CYP2D6) based on an alignment with CYP102: structural studies on specific CYP2D6 substrate metabolism. Xenobiotica 1997, 27, 319-340.
-
(1997)
Xenobiotica
, vol.27
, pp. 319-340
-
-
Lewis, D.F.V.1
Eddershaw, P.J.2
Goldfarb, P.S.3
Tarbit, M.H.4
-
200
-
-
0032804701
-
Homology modelling of human cytochromes P450 involved in xenobiotic metabolism and rationalization of substrate selectivity
-
Lewis, D. F. Homology modelling of human cytochromes P450 involved in xenobiotic metabolism and rationalization of substrate selectivity. Exp. Toxicol. Pathol. 1999, 51, 369-374.
-
(1999)
Exp. Toxicol. Pathol.
, vol.51
, pp. 369-374
-
-
Lewis, D.F.1
-
201
-
-
0030942096
-
A hypothetical model for the active site of human cytochrome P4502E1
-
Tan, Y.; White, S. P.; Paranawithana, S. R.; Yang, C. S. A hypothetical model for the active site of human cytochrome P4502E1. Xenobiotica 1997, 27, 287-299.
-
(1997)
Xenobiotica
, vol.27
, pp. 287-299
-
-
Tan, Y.1
White, S.P.2
Paranawithana, S.R.3
Yang, C.S.4
-
202
-
-
0037247950
-
A quantitative structure-activity relationship analysis on a series of alkyl benzenes metabolized by human cytochrome P450 2E1
-
Lewis, D. F.; Sams, C.; Loizou, G. D. A quantitative structure-activity relationship analysis on a series of alkyl benzenes metabolized by human cytochrome P450 2E1. J. Biochem. Mol. Toxicol. 2003, 17, 47-52.
-
(2003)
J. Biochem. Mol. Toxicol.
, vol.17
, pp. 47-52
-
-
Lewis, D.F.1
Sams, C.2
Loizou, G.D.3
-
203
-
-
0037464481
-
Construction and assessment of models of CYP2E1: Predictions of metabolism from docking, molecular dynamics, and density functional theoretical calculations
-
Park, J.-Y.; Harris, D. Construction and assessment of models of CYP2E1: predictions of metabolism from docking, molecular dynamics, and density functional theoretical calculations. J. Med. Chem. 2003, 46, 1645-1660.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 1645-1660
-
-
Park, J.-Y.1
Harris, D.2
-
204
-
-
0029805701
-
Molecular modelling of CYP3A4 from an alignment with CYP102: Identification of key interactions between putative active site residues and CYP3A-specific chemicals
-
Lewis, D. F. V.; Eddershaw, P. J.; Goldfarb, P. S.; Tarbit, M. H. Molecular modelling of CYP3A4 from an alignment with CYP102: identification of key interactions between putative active site residues and CYP3A-specific chemicals. Xenobiotica 1996, 26, 1067-1086.
-
(1996)
Xenobiotica
, vol.26
, pp. 1067-1086
-
-
Lewis, D.F.V.1
Eddershaw, P.J.2
Goldfarb, P.S.3
Tarbit, M.H.4
-
206
-
-
0033557287
-
Homology modeling and substrate binding study of human CYP4A11 enzyme
-
Chang, Y. T.; Loew, G. H. Homology modeling and substrate binding study of human CYP4A11 enzyme. Proteins 1999, 34 403-415.
-
(1999)
Proteins
, vol.34
, pp. 403-415
-
-
Chang, Y.T.1
Loew, G.H.2
-
207
-
-
1542364450
-
Structure of human imcrosomal cytochrome P450 2C8. Evidence for a peripheral fatty acid binding site
-
Sochoch, G.A.; Yano, J.K.; Wester, M.R.; Griffin, K.J.; Stout, C.D.; Johnson, E.F. Structure of human imcrosomal cytochrome P450 2C8. Evidence for a peripheral fatty acid binding site. J. Biol. Chem. 2004, 279, 9497-9503.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 9497-9503
-
-
Sochoch, G.A.1
Yano, J.K.2
Wester, M.R.3
Griffin, K.J.4
Stout, C.D.5
Johnson, E.F.6
-
208
-
-
4644301430
-
The structure of human microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05 A resolution
-
Yano, J.K.; Wester, M.R.; Schoch, G.A., Griffin, K.J.; Stout, C.D.; Johnson, E.F. The structure of human microsomal cytochrome P450 3A4 determined by X-ray crystallography to 2.05 A resolution. J. Biol. Chem. 2004, 279, 38091-38094
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 38091-38094
-
-
Yano, J.K.1
Wester, M.R.2
Schoch, G.A.3
Griffin, K.J.4
Stout, C.D.5
Johnson, E.F.6
-
209
-
-
3442896773
-
Crystal structures of human cytochrome P450 3A4 bound to metyrapone and progesterone
-
Williams, P.A.; Cosme, J.; Vinkovic, D.M.; Ward, A.; Angove, H.C.; Day, P.J.; Vonrhein, C.; Tickle, I.J.; Jhoti, H. Crystal structures of human cytochrome P450 3A4 bound to metyrapone and progesterone. Science 2004, 305, 683-686.
-
(2004)
Science
, vol.305
, pp. 683-686
-
-
Williams, P.A.1
Cosme, J.2
Vinkovic, D.M.3
Ward, A.4
Angove, H.C.5
Day, P.J.6
Vonrhein, C.7
Tickle, I.J.8
Jhoti, H.9
|