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0345424976
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note
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A diverse set of substrates was selected randomly from the literature from compounds not included in the training set.
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26
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0344562816
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note
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27
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0344993853
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note
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The numbering of substrates is continued from the first part of this publication (ref 7).
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28
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0345424975
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note
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Conformational search using the SYBYL force field employing the genetic algorithm, without geometry optimization (popsize = 150-250 depending on number of retable bonds). Of the resulting conformers, all conformers within 25 kcal/mol from the lowest energy were geometry optimized using AM1 (optcycle = 1000, maxcycle = 1000).
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0345424974
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note
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Geometry optimization using AM1 (optcycle = 1000, maxcycle = 1000).
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31
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0344993852
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note
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The site of oxidation and the aromatic rings of the substrates were superimposed.
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34
-
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0344562813
-
-
note
-
2)) were used. Starting orientations have aromatic ring in substrate coplanar with aromatic ring of Phe481.
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35
-
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0344131316
-
-
note
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2).
-
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36
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0344131317
-
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note
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The model which has the methyl of MPTP closest to the heme was selected.
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39
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