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Volumn 156, Issue 3, 2019, Pages 562-576

Modeling Human Digestive Diseases With CRISPR-Cas9–Modified Organoids

Author keywords

Colorectal Cancer; Gastric Cancer; Inflammatory Bowel Disease; Pancreatic Cancer

Indexed keywords

CANCER STEM CELL; COLORECTAL CANCER; CRISPR-CAS9 SYSTEM; DIGESTIVE SYSTEM CANCER; DRUG SCREENING; ESOPHAGUS; GASTROINTESTINAL DISEASE; GENE EDITING; HEPATOBILIARY SYSTEM; HUMAN; INDEL MUTATION; LARGE INTESTINE; NONHUMAN; ORGANOID; PANCREAS; PANCREAS CANCER; PRIORITY JOURNAL; REGENERATIVE MEDICINE; REVERSE GENETICS; REVIEW; SMALL INTESTINE; STOMACH; STOMACH CANCER; COLORECTAL TUMOR; CRISPR CAS SYSTEM; ESOPHAGUS TUMOR; FEMALE; GASTROINTESTINAL TRACT; GASTROINTESTINAL TUMOR; GENETIC PREDISPOSITION; GENETICS; MALE; PANCREAS TUMOR; PATHOLOGY; SENSITIVITY AND SPECIFICITY;

EID: 85060989433     PISSN: 00165085     EISSN: 15280012     Source Type: Journal    
DOI: 10.1053/j.gastro.2018.11.048     Document Type: Review
Times cited : (103)

References (150)
  • 1
    • 85045188504 scopus 로고    scopus 로고
    • The key role of epigenetics in human disease prevention and mitigation
    • Feinberg, A.P., The key role of epigenetics in human disease prevention and mitigation. N Engl J Med 378 (2018), 1323–1334.
    • (2018) N Engl J Med , vol.378 , pp. 1323-1334
    • Feinberg, A.P.1
  • 2
    • 77958192172 scopus 로고    scopus 로고
    • Epidemiology. Environment and disease risks
    • Rappaport, S.M., Smith, M.T., Epidemiology. Environment and disease risks. Science 330 (2010), 460–461.
    • (2010) Science , vol.330 , pp. 460-461
    • Rappaport, S.M.1    Smith, M.T.2
  • 3
    • 84875758730 scopus 로고    scopus 로고
    • Lessons from the cancer genome
    • Garraway, L.A., Lander, E.S., Lessons from the cancer genome. Cell 153 (2013), 17–37.
    • (2013) Cell , vol.153 , pp. 17-37
    • Garraway, L.A.1    Lander, E.S.2
  • 4
    • 85006705751 scopus 로고    scopus 로고
    • CRISPR-based technologies for the manipulation of eukaryotic genomes
    • Komor, A.C., Badran, A.H., Liu, D.R., CRISPR-based technologies for the manipulation of eukaryotic genomes. Cell 168 (2017), 20–36.
    • (2017) Cell , vol.168 , pp. 20-36
    • Komor, A.C.1    Badran, A.H.2    Liu, D.R.3
  • 5
    • 85047180904 scopus 로고    scopus 로고
    • The CRISPR tool kit for genome editing and beyond
    • Adli, M., The CRISPR tool kit for genome editing and beyond. Nat Commun, 9, 2018, 1911.
    • (2018) Nat Commun , vol.9 , pp. 1911
    • Adli, M.1
  • 6
    • 84975275212 scopus 로고    scopus 로고
    • Modeling development and disease with organoids
    • Clevers, H., Modeling development and disease with organoids. Cell 165 (2016), 1586–1597.
    • (2016) Cell , vol.165 , pp. 1586-1597
    • Clevers, H.1
  • 7
    • 67349123408 scopus 로고    scopus 로고
    • Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
    • Sato, T., Vries, R.G., Snippert, H.J., et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 459 (2009), 262–265.
    • (2009) Nature , vol.459 , pp. 262-265
    • Sato, T.1    Vries, R.G.2    Snippert, H.J.3
  • 8
    • 80053978141 scopus 로고    scopus 로고
    • Isolation and in vitro expansion of human colonic stem cells
    • Jung, P., Sato, T., Merlos-Suarez, A., et al. Isolation and in vitro expansion of human colonic stem cells. Nat Med 17 (2011), 1225–1227.
    • (2011) Nat Med , vol.17 , pp. 1225-1227
    • Jung, P.1    Sato, T.2    Merlos-Suarez, A.3
  • 9
    • 80054857419 scopus 로고    scopus 로고
    • Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett's epithelium
    • Sato, T., Stange, D.E., Ferrante, M., et al. Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett's epithelium. Gastroenterology 141 (2011), 1762–1772.
    • (2011) Gastroenterology , vol.141 , pp. 1762-1772
    • Sato, T.1    Stange, D.E.2    Ferrante, M.3
  • 10
    • 73049116186 scopus 로고    scopus 로고
    • Lgr5(+ve) stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro
    • Barker, N., Huch, M., Kujala, P., et al. Lgr5(+ve) stem cells drive self-renewal in the stomach and build long-lived gastric units in vitro. Cell Stem Cell 6 (2010), 25–36.
    • (2010) Cell Stem Cell , vol.6 , pp. 25-36
    • Barker, N.1    Huch, M.2    Kujala, P.3
  • 11
    • 84922875352 scopus 로고    scopus 로고
    • In vitro expansion of human gastric epithelial stem cells and their responses to bacterial infection
    • Bartfeld, S., Bayram, T., van de Wetering, M., et al. In vitro expansion of human gastric epithelial stem cells and their responses to bacterial infection. Gastroenterology 148 (2015), 126–136 e6.
    • (2015) Gastroenterology , vol.148 , pp. 126-136 e6
    • Bartfeld, S.1    Bayram, T.2    van de Wetering, M.3
  • 12
    • 84885846800 scopus 로고    scopus 로고
    • Unlimited in vitro expansion of adult bi-potent pancreas progenitors through the Lgr5/R-spondin axis
    • Huch, M., Bonfanti, P., Boj, S.F., et al. Unlimited in vitro expansion of adult bi-potent pancreas progenitors through the Lgr5/R-spondin axis. EMBO J 32 (2013), 2708–2721.
    • (2013) EMBO J , vol.32 , pp. 2708-2721
    • Huch, M.1    Bonfanti, P.2    Boj, S.F.3
  • 13
    • 84920983131 scopus 로고    scopus 로고
    • Organoid models of human and mouse ductal pancreatic cancer
    • Boj, S.F., Hwang, C.I., Baker, L.A., et al. Organoid models of human and mouse ductal pancreatic cancer. Cell 160 (2015), 324–338.
    • (2015) Cell , vol.160 , pp. 324-338
    • Boj, S.F.1    Hwang, C.I.2    Baker, L.A.3
  • 14
    • 84873712443 scopus 로고    scopus 로고
    • In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration
    • Huch, M., Dorrell, C., Boj, S.F., et al. In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration. Nature 494 (2013), 247–250.
    • (2013) Nature , vol.494 , pp. 247-250
    • Huch, M.1    Dorrell, C.2    Boj, S.F.3
  • 15
    • 84920989984 scopus 로고    scopus 로고
    • Long-term culture of genome-stable bipotent stem cells from adult human liver
    • Huch, M., Gehart, H., van Boxtel, R., et al. Long-term culture of genome-stable bipotent stem cells from adult human liver. Cell 160 (2015), 299–312.
    • (2015) Cell , vol.160 , pp. 299-312
    • Huch, M.1    Gehart, H.2    van Boxtel, R.3
  • 16
    • 84961263047 scopus 로고    scopus 로고
    • R-spondin 1 and noggin facilitate expansion of resident stem cells from non-damaged gallbladders
    • Lugli, N., Kamileri, I., Keogh, A., et al. R-spondin 1 and noggin facilitate expansion of resident stem cells from non-damaged gallbladders. EMBO Rep 17 (2016), 769–779.
    • (2016) EMBO Rep , vol.17 , pp. 769-779
    • Lugli, N.1    Kamileri, I.2    Keogh, A.3
  • 17
    • 85029428014 scopus 로고    scopus 로고
    • Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids
    • Sampaziotis, F., Justin, A.W., Tysoe, O.C., et al. Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids. Nat Med 23 (2017), 954–963.
    • (2017) Nat Med , vol.23 , pp. 954-963
    • Sampaziotis, F.1    Justin, A.W.2    Tysoe, O.C.3
  • 18
    • 84919623629 scopus 로고    scopus 로고
    • Cellular heterogeneity in the mouse esophagus implicates the presence of a nonquiescent epithelial stem cell population
    • DeWard, A.D., Cramer, J., Lagasse, E., Cellular heterogeneity in the mouse esophagus implicates the presence of a nonquiescent epithelial stem cell population. Cell Rep 9 (2014), 701–711.
    • (2014) Cell Rep , vol.9 , pp. 701-711
    • DeWard, A.D.1    Cramer, J.2    Lagasse, E.3
  • 19
    • 85032446341 scopus 로고    scopus 로고
    • Transitional basal cells at the squamous-columnar junction generate Barrett's oesophagus
    • Jiang, M., Li, H., Zhang, Y., et al. Transitional basal cells at the squamous-columnar junction generate Barrett's oesophagus. Nature 550 (2017), 529–533.
    • (2017) Nature , vol.550 , pp. 529-533
    • Jiang, M.1    Li, H.2    Zhang, Y.3
  • 20
    • 85043606932 scopus 로고    scopus 로고
    • The esophageal organoid system reveals functional interplay between notch and cytokines in reactive epithelial changes
    • Kasagi, Y., Chandramouleeswaran, P.M., Whelan, K.A., et al. The esophageal organoid system reveals functional interplay between notch and cytokines in reactive epithelial changes. Cell Mol Gastroenterol Hepatol 5 (2018), 333–352.
    • (2018) Cell Mol Gastroenterol Hepatol , vol.5 , pp. 333-352
    • Kasagi, Y.1    Chandramouleeswaran, P.M.2    Whelan, K.A.3
  • 21
    • 84907552531 scopus 로고    scopus 로고
    • Identification of multipotent luminal progenitor cells in human prostate organoid cultures
    • Karthaus, W.R., Iaquinta, P.J., Drost, J., et al. Identification of multipotent luminal progenitor cells in human prostate organoid cultures. Cell 159 (2014), 163–175.
    • (2014) Cell , vol.159 , pp. 163-175
    • Karthaus, W.R.1    Iaquinta, P.J.2    Drost, J.3
  • 22
    • 84922067781 scopus 로고    scopus 로고
    • Single luminal epithelial progenitors can generate prostate organoids in culture
    • 951–61, 1–4
    • Chua, C.W., Shibata, M., Lei, M., et al. Single luminal epithelial progenitors can generate prostate organoids in culture. Nat Cell Biol, 16, 2014 951–61, 1–4.
    • (2014) Nat Cell Biol , vol.16
    • Chua, C.W.1    Shibata, M.2    Lei, M.3
  • 23
    • 84992593504 scopus 로고    scopus 로고
    • Wnt and Neuregulin1/ErbB signalling extends 3D culture of hormone responsive mammary organoids
    • Jarde, T., Lloyd-Lewis, B., Thomas, M., et al. Wnt and Neuregulin1/ErbB signalling extends 3D culture of hormone responsive mammary organoids. Nat Commun, 7, 2016, 13207.
    • (2016) Nat Commun , vol.7 , pp. 13207
    • Jarde, T.1    Lloyd-Lewis, B.2    Thomas, M.3
  • 24
    • 85041124826 scopus 로고    scopus 로고
    • A living biobank of breast cancer organoids captures disease heterogeneity
    • Sachs, N., de Ligt, J., Kopper, O., et al. A living biobank of breast cancer organoids captures disease heterogeneity. Cell 172 (2018), 373–386 e10.
    • (2018) Cell , vol.172 , pp. 373-386 e10
    • Sachs, N.1    de Ligt, J.2    Kopper, O.3
  • 25
    • 85017216625 scopus 로고    scopus 로고
    • Long-term, hormone-responsive organoid cultures of human endometrium in a chemically defined medium
    • Turco, M.Y., Gardner, L., Hughes, J., et al. Long-term, hormone-responsive organoid cultures of human endometrium in a chemically defined medium. Nat Cell Biol 19 (2017), 568–577.
    • (2017) Nat Cell Biol , vol.19 , pp. 568-577
    • Turco, M.Y.1    Gardner, L.2    Hughes, J.3
  • 26
    • 84949504069 scopus 로고    scopus 로고
    • The Notch and Wnt pathways regulate stemness and differentiation in human fallopian tube organoids
    • Kessler, M., Hoffmann, K., Brinkmann, V., et al. The Notch and Wnt pathways regulate stemness and differentiation in human fallopian tube organoids. Nat Commun, 6, 2015, 8989.
    • (2015) Nat Commun , vol.6 , pp. 8989
    • Kessler, M.1    Hoffmann, K.2    Brinkmann, V.3
  • 27
    • 84917734391 scopus 로고    scopus 로고
    • Single Lgr5- or Lgr6-expressing taste stem/progenitor cells generate taste bud cells ex vivo
    • Ren, W., Lewandowski, B.C., Watson, J., et al. Single Lgr5- or Lgr6-expressing taste stem/progenitor cells generate taste bud cells ex vivo. Proc Natl Acad Sci U S A 111 (2014), 16401–16406.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 16401-16406
    • Ren, W.1    Lewandowski, B.C.2    Watson, J.3
  • 28
    • 84955415712 scopus 로고    scopus 로고
    • Long-term in vitro expansion of salivary gland stem cells driven by Wnt signals
    • Maimets, M., Rocchi, C., Bron, R., et al. Long-term in vitro expansion of salivary gland stem cells driven by Wnt signals. Stem Cell Reports 6 (2016), 150–162.
    • (2016) Stem Cell Reports , vol.6 , pp. 150-162
    • Maimets, M.1    Rocchi, C.2    Bron, R.3
  • 29
    • 69149106207 scopus 로고    scopus 로고
    • Basal cells as stem cells of the mouse trachea and human airway epithelium
    • Rock, J.R., Onaitis, M.W., Rawlins, E.L., et al. Basal cells as stem cells of the mouse trachea and human airway epithelium. Proc Natl Acad Sci U S A 106 (2009), 12771–12775.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 12771-12775
    • Rock, J.R.1    Onaitis, M.W.2    Rawlins, E.L.3
  • 30
    • 84904396621 scopus 로고    scopus 로고
    • Organogenesis in a dish: modeling development and disease using organoid technologies
    • Lancaster, M.A., Knoblich, J.A., Organogenesis in a dish: modeling development and disease using organoid technologies. Science, 345, 2014, 1247125.
    • (2014) Science , vol.345 , pp. 1247125
    • Lancaster, M.A.1    Knoblich, J.A.2
  • 31
    • 84959357347 scopus 로고    scopus 로고
    • Organoids as an in vitro model of human development and disease
    • Fatehullah, A., Tan, S.H., Barker, N., Organoids as an in vitro model of human development and disease. Nat Cell Biol 18 (2016), 246–254.
    • (2016) Nat Cell Biol , vol.18 , pp. 246-254
    • Fatehullah, A.1    Tan, S.H.2    Barker, N.3
  • 32
    • 84964317107 scopus 로고    scopus 로고
    • Organoid models of human gastrointestinal development and disease
    • Dedhia, P.H., Bertaux-Skeirik, N., Zavros, Y., et al. Organoid models of human gastrointestinal development and disease. Gastroenterology 150 (2016), 1098–1112.
    • (2016) Gastroenterology , vol.150 , pp. 1098-1112
    • Dedhia, P.H.1    Bertaux-Skeirik, N.2    Zavros, Y.3
  • 33
    • 85015342082 scopus 로고    scopus 로고
    • Pluripotent stem cell-derived organoids: using principles of developmental biology to grow human tissues in a dish
    • McCauley, H.A., Wells, J.M., Pluripotent stem cell-derived organoids: using principles of developmental biology to grow human tissues in a dish. Development 144 (2017), 958–962.
    • (2017) Development , vol.144 , pp. 958-962
    • McCauley, H.A.1    Wells, J.M.2
  • 34
    • 85043599669 scopus 로고    scopus 로고
    • Translating developmental principles to generate human gastric organoids
    • Eicher, A.K., Berns, H.M., Wells, J.M., Translating developmental principles to generate human gastric organoids. Cell Mol Gastroenterol Hepatol 5 (2018), 353–363.
    • (2018) Cell Mol Gastroenterol Hepatol , vol.5 , pp. 353-363
    • Eicher, A.K.1    Berns, H.M.2    Wells, J.M.3
  • 35
    • 84947207751 scopus 로고    scopus 로고
    • Mini-gut organoids: reconstitution of the stem cell niche
    • Date, S., Sato, T., Mini-gut organoids: reconstitution of the stem cell niche. Annu Rev Cell Dev Biol 31 (2015), 269–289.
    • (2015) Annu Rev Cell Dev Biol , vol.31 , pp. 269-289
    • Date, S.1    Sato, T.2
  • 36
    • 84934954085 scopus 로고    scopus 로고
    • SnapShot: growing organoids from stem cells
    • Sato, T., Clevers, H., SnapShot: growing organoids from stem cells. Cell 161 (2015), 1700–1700 e1.
    • (2015) Cell , vol.161 , pp. 1700-1700 e1
    • Sato, T.1    Clevers, H.2
  • 37
    • 67349157318 scopus 로고    scopus 로고
    • Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche
    • Ootani, A., Li, X., Sangiorgi, E., et al. Sustained in vitro intestinal epithelial culture within a Wnt-dependent stem cell niche. Nat Med 15 (2009), 701–706.
    • (2009) Nat Med , vol.15 , pp. 701-706
    • Ootani, A.1    Li, X.2    Sangiorgi, E.3
  • 38
    • 84931268960 scopus 로고    scopus 로고
    • Cloning and variation of ground state intestinal stem cells
    • Wang, X., Yamamoto, Y., Wilson, L.H., et al. Cloning and variation of ground state intestinal stem cells. Nature 522 (2015), 173–178.
    • (2015) Nature , vol.522 , pp. 173-178
    • Wang, X.1    Yamamoto, Y.2    Wilson, L.H.3
  • 39
    • 84901386333 scopus 로고    scopus 로고
    • Stroma provides an intestinal stem cell niche in the absence of epithelial Wnts
    • Kabiri, Z., Greicius, G., Madan, B., et al. Stroma provides an intestinal stem cell niche in the absence of epithelial Wnts. Development 141 (2014), 2206–2215.
    • (2014) Development , vol.141 , pp. 2206-2215
    • Kabiri, Z.1    Greicius, G.2    Madan, B.3
  • 40
    • 85018017663 scopus 로고    scopus 로고
    • Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer
    • Ohlund, D., Handly-Santana, A., Biffi, G., et al. Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer. J Exp Med 214 (2017), 579–596.
    • (2017) J Exp Med , vol.214 , pp. 579-596
    • Ohlund, D.1    Handly-Santana, A.2    Biffi, G.3
  • 41
    • 85040451325 scopus 로고    scopus 로고
    • Human pancreatic tumor organoids reveal loss of stem cell niche factor dependence during disease progression
    • Seino, T., Kawasaki, S., Shimokawa, M., et al. Human pancreatic tumor organoids reveal loss of stem cell niche factor dependence during disease progression. Cell Stem Cell 22 (2018), 454–467 e6.
    • (2018) Cell Stem Cell , vol.22 , pp. 454-467 e6
    • Seino, T.1    Kawasaki, S.2    Shimokawa, M.3
  • 42
    • 84959091265 scopus 로고    scopus 로고
    • Co-culture with intestinal epithelial organoids allows efficient expansion and motility analysis of intraepithelial lymphocytes
    • Nozaki, K., Mochizuki, W., Matsumoto, Y., et al. Co-culture with intestinal epithelial organoids allows efficient expansion and motility analysis of intraepithelial lymphocytes. J Gastroenterol 51 (2016), 206–213.
    • (2016) J Gastroenterol , vol.51 , pp. 206-213
    • Nozaki, K.1    Mochizuki, W.2    Matsumoto, Y.3
  • 43
    • 85052651284 scopus 로고    scopus 로고
    • Generation of Tumor-reactive T cells by co-culture of peripheral blood lymphocytes and tumor organoids
    • Dijkstra, K.K., Cattaneo, C.M., Weeber, F., et al. Generation of Tumor-reactive T cells by co-culture of peripheral blood lymphocytes and tumor organoids. Cell 174 (2018), 1586–1598 e12.
    • (2018) Cell , vol.174 , pp. 1586-1598 e12
    • Dijkstra, K.K.1    Cattaneo, C.M.2    Weeber, F.3
  • 44
    • 84924422753 scopus 로고    scopus 로고
    • Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids
    • Matano, M., Date, S., Shimokawa, M., et al. Modeling colorectal cancer using CRISPR-Cas9-mediated engineering of human intestinal organoids. Nat Med 21 (2015), 256–262.
    • (2015) Nat Med , vol.21 , pp. 256-262
    • Matano, M.1    Date, S.2    Shimokawa, M.3
  • 45
    • 84929103936 scopus 로고    scopus 로고
    • Sequential cancer mutations in cultured human intestinal stem cells
    • Drost, J., van Jaarsveld, R.H., Ponsioen, B., et al. Sequential cancer mutations in cultured human intestinal stem cells. Nature 521 (2015), 43–47.
    • (2015) Nature , vol.521 , pp. 43-47
    • Drost, J.1    van Jaarsveld, R.H.2    Ponsioen, B.3
  • 46
    • 84942524980 scopus 로고    scopus 로고
    • Efficient genetic engineering of human intestinal organoids using electroporation
    • Fujii, M., Matano, M., Nanki, K., et al. Efficient genetic engineering of human intestinal organoids using electroporation. Nat Protoc 10 (2015), 1474–1485.
    • (2015) Nat Protoc , vol.10 , pp. 1474-1485
    • Fujii, M.1    Matano, M.2    Nanki, K.3
  • 47
    • 84940501210 scopus 로고    scopus 로고
    • Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach
    • Chari, R., Mali, P., Moosburner, M., et al. Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach. Nat Methods 12 (2015), 823–826.
    • (2015) Nat Methods , vol.12 , pp. 823-826
    • Chari, R.1    Mali, P.2    Moosburner, M.3
  • 48
    • 84957605863 scopus 로고    scopus 로고
    • Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
    • Doench, J.G., Fusi, N., Sullender, M., et al. Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9. Nat Biotechnol 34 (2016), 184–191.
    • (2016) Nat Biotechnol , vol.34 , pp. 184-191
    • Doench, J.G.1    Fusi, N.2    Sullender, M.3
  • 49
    • 84977522458 scopus 로고    scopus 로고
    • Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR
    • Haeussler, M., Schonig, K., Eckert, H., et al. Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR. Genome Biol, 17, 2016, 148.
    • (2016) Genome Biol , vol.17 , pp. 148
    • Haeussler, M.1    Schonig, K.2    Eckert, H.3
  • 50
    • 84963941043 scopus 로고    scopus 로고
    • High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects
    • Kleinstiver, B.P., Pattanayak, V., Prew, M.S., et al. High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature 529 (2016), 490–495.
    • (2016) Nature , vol.529 , pp. 490-495
    • Kleinstiver, B.P.1    Pattanayak, V.2    Prew, M.S.3
  • 51
    • 84884288934 scopus 로고    scopus 로고
    • Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
    • Ran, F.A., Hsu, P.D., Lin, C.Y., et al. Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154 (2013), 1380–1389.
    • (2013) Cell , vol.154 , pp. 1380-1389
    • Ran, F.A.1    Hsu, P.D.2    Lin, C.Y.3
  • 52
    • 85051287947 scopus 로고    scopus 로고
    • Repair of double-strand breaks induced by CRISPR-Cas9 leads to large deletions and complex rearrangements
    • Kosicki, M., Tomberg, K., Bradley, A., Repair of double-strand breaks induced by CRISPR-Cas9 leads to large deletions and complex rearrangements. Nat Biotechnol 36 (2018), 765–771.
    • (2018) Nat Biotechnol , vol.36 , pp. 765-771
    • Kosicki, M.1    Tomberg, K.2    Bradley, A.3
  • 53
    • 84880548336 scopus 로고    scopus 로고
    • The intestinal crypt, a prototype stem cell compartment
    • Clevers, H., The intestinal crypt, a prototype stem cell compartment. Cell 154 (2013), 274–284.
    • (2013) Cell , vol.154 , pp. 274-284
    • Clevers, H.1
  • 54
    • 35548974423 scopus 로고    scopus 로고
    • Identification of stem cells in small intestine and colon by marker gene Lgr5
    • Barker, N., van Es, J.H., Kuipers, J., et al. Identification of stem cells in small intestine and colon by marker gene Lgr5. Nature 449 (2007), 1003–1007.
    • (2007) Nature , vol.449 , pp. 1003-1007
    • Barker, N.1    van Es, J.H.2    Kuipers, J.3
  • 55
    • 84975744535 scopus 로고    scopus 로고
    • Cystic fibrosis
    • Elborn, J.S., Cystic fibrosis. Lancet 388 (2016), 2519–2531.
    • (2016) Lancet , vol.388 , pp. 2519-2531
    • Elborn, J.S.1
  • 56
    • 84880292828 scopus 로고    scopus 로고
    • A functional CFTR assay using primary cystic fibrosis intestinal organoids
    • Dekkers, J.F., Wiegerinck, C.L., de Jonge, H.R., et al. A functional CFTR assay using primary cystic fibrosis intestinal organoids. Nat Med 19 (2013), 939–945.
    • (2013) Nat Med , vol.19 , pp. 939-945
    • Dekkers, J.F.1    Wiegerinck, C.L.2    de Jonge, H.R.3
  • 57
    • 84975464759 scopus 로고    scopus 로고
    • Characterizing responses to CFTR-modulating drugs using rectal organoids derived from subjects with cystic fibrosis
    • Dekkers, J.F., Berkers, G., Kruisselbrink, E., et al. Characterizing responses to CFTR-modulating drugs using rectal organoids derived from subjects with cystic fibrosis. Sci Transl Med, 8, 2016, 344ra84.
    • (2016) Sci Transl Med , vol.8 , pp. 344ra84
    • Dekkers, J.F.1    Berkers, G.2    Kruisselbrink, E.3
  • 58
    • 84890033064 scopus 로고    scopus 로고
    • Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients
    • Schwank, G., Koo, B.K., Sasselli, V., et al. Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients. Cell Stem Cell 13 (2013), 653–658.
    • (2013) Cell Stem Cell , vol.13 , pp. 653-658
    • Schwank, G.1    Koo, B.K.2    Sasselli, V.3
  • 59
    • 84892928479 scopus 로고    scopus 로고
    • TTC7A mutations disrupt intestinal epithelial apicobasal polarity
    • Bigorgne, A.E., Farin, H.F., Lemoine, R., et al. TTC7A mutations disrupt intestinal epithelial apicobasal polarity. J Clin Invest 124 (2014), 328–337.
    • (2014) J Clin Invest , vol.124 , pp. 328-337
    • Bigorgne, A.E.1    Farin, H.F.2    Lemoine, R.3
  • 60
    • 84902957441 scopus 로고    scopus 로고
    • Loss of syntaxin 3 causes variant microvillus inclusion disease
    • Wiegerinck, C.L., Janecke, A.R., Schneeberger, K., et al. Loss of syntaxin 3 causes variant microvillus inclusion disease. Gastroenterology 147 (2014), 65–68 e10.
    • (2014) Gastroenterology , vol.147 , pp. 65-68 e10
    • Wiegerinck, C.L.1    Janecke, A.R.2    Schneeberger, K.3
  • 61
    • 85049311034 scopus 로고    scopus 로고
    • Intestinal failure and aberrant lipid metabolism in patients with DGAT1 deficiency
    • van Rijn, J.M., Ardy, R.C., Kuloglu, Z., et al. Intestinal failure and aberrant lipid metabolism in patients with DGAT1 deficiency. Gastroenterology 155 (2018), 130–143.e15.
    • (2018) Gastroenterology , vol.155 , pp. 130-143.e15
    • van Rijn, J.M.1    Ardy, R.C.2    Kuloglu, Z.3
  • 62
    • 52949112224 scopus 로고    scopus 로고
    • MYO5B mutations cause microvillus inclusion disease and disrupt epithelial cell polarity
    • Muller, T., Hess, M.W., Schiefermeier, N., et al. MYO5B mutations cause microvillus inclusion disease and disrupt epithelial cell polarity. Nat Genet 40 (2008), 1163–1165.
    • (2008) Nat Genet , vol.40 , pp. 1163-1165
    • Muller, T.1    Hess, M.W.2    Schiefermeier, N.3
  • 63
    • 84870551536 scopus 로고    scopus 로고
    • DGAT1 mutation is linked to a congenital diarrheal disorder
    • Haas, J.T., Winter, H.S., Lim, E., et al. DGAT1 mutation is linked to a congenital diarrheal disorder. J Clin Invest 122 (2012), 4680–4684.
    • (2012) J Clin Invest , vol.122 , pp. 4680-4684
    • Haas, J.T.1    Winter, H.S.2    Lim, E.3
  • 64
    • 85047505627 scopus 로고    scopus 로고
    • DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development
    • Kraiczy, J., Nayak, K.M., Howell, K.J., et al. DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development. Gut 68 (2019), 49–61.
    • (2019) Gut , vol.68 , pp. 49-61
    • Kraiczy, J.1    Nayak, K.M.2    Howell, K.J.3
  • 65
    • 84994885304 scopus 로고    scopus 로고
    • Alterations in the epithelial stem cell compartment could contribute to permanent changes in the mucosa of patients with ulcerative colitis
    • Dotti, I., Mora-Buch, R., Ferrer-Picon, E., et al. Alterations in the epithelial stem cell compartment could contribute to permanent changes in the mucosa of patients with ulcerative colitis. Gut 66 (2017), 2069–2079.
    • (2017) Gut , vol.66 , pp. 2069-2079
    • Dotti, I.1    Mora-Buch, R.2    Ferrer-Picon, E.3
  • 66
    • 85044468314 scopus 로고    scopus 로고
    • DNA methylation and transcription patterns in intestinal epithelial cells from pediatric patients with inflammatory bowel diseases differentiate disease subtypes and associate with outcome
    • Howell, K.J., Kraiczy, J., Nayak, K.M., et al. DNA methylation and transcription patterns in intestinal epithelial cells from pediatric patients with inflammatory bowel diseases differentiate disease subtypes and associate with outcome. Gastroenterology 154 (2018), 585–598.
    • (2018) Gastroenterology , vol.154 , pp. 585-598
    • Howell, K.J.1    Kraiczy, J.2    Nayak, K.M.3
  • 67
    • 84958987439 scopus 로고    scopus 로고
    • A novel human gastric primary cell culture system for modelling Helicobacter pylori infection in vitro
    • Schlaermann, P., Toelle, B., Berger, H., et al. A novel human gastric primary cell culture system for modelling Helicobacter pylori infection in vitro. Gut 65 (2016), 202–213.
    • (2016) Gut , vol.65 , pp. 202-213
    • Schlaermann, P.1    Toelle, B.2    Berger, H.3
  • 68
    • 84946215806 scopus 로고    scopus 로고
    • Ductal pancreatic cancer modeling and drug screening using human pluripotent stem cell- and patient-derived tumor organoids
    • Huang, L., Holtzinger, A., Jagan, I., et al. Ductal pancreatic cancer modeling and drug screening using human pluripotent stem cell- and patient-derived tumor organoids. Nat Med 21 (2015), 1364–1371.
    • (2015) Nat Med , vol.21 , pp. 1364-1371
    • Huang, L.1    Holtzinger, A.2    Jagan, I.3
  • 69
    • 84939490816 scopus 로고    scopus 로고
    • Self-renewing diploid Axin2(+) cells fuel homeostatic renewal of the liver
    • Wang, B., Zhao, L., Fish, M., et al. Self-renewing diploid Axin2(+) cells fuel homeostatic renewal of the liver. Nature, 524, 2015, 180185.
    • (2015) Nature , vol.524 , pp. 180185
    • Wang, B.1    Zhao, L.2    Fish, M.3
  • 70
    • 85016148799 scopus 로고    scopus 로고
    • Single-cell spatial reconstruction reveals global division of labour in the mammalian liver
    • Halpern, K.B., Shenhav, R., Matcovitch-Natan, O., et al. Single-cell spatial reconstruction reveals global division of labour in the mammalian liver. Nature 542 (2017), 352–356.
    • (2017) Nature , vol.542 , pp. 352-356
    • Halpern, K.B.1    Shenhav, R.2    Matcovitch-Natan, O.3
  • 71
    • 84964409148 scopus 로고    scopus 로고
    • The RSPO-LGR4/5-ZNRF3/RNF43 module controls liver zonation and size
    • Planas-Paz, L., Orsini, V., Boulter, L., et al. The RSPO-LGR4/5-ZNRF3/RNF43 module controls liver zonation and size. Nat Cell Biol 18 (2016), 467–479.
    • (2016) Nat Cell Biol , vol.18 , pp. 467-479
    • Planas-Paz, L.1    Orsini, V.2    Boulter, L.3
  • 72
    • 85045280524 scopus 로고    scopus 로고
    • Distributed hepatocytes expressing telomerase repopulate the liver in homeostasis and injury
    • Lin, S., Nascimento, E.M., Gajera, C.R., et al. Distributed hepatocytes expressing telomerase repopulate the liver in homeostasis and injury. Nature 556 (2018), 244–248.
    • (2018) Nature , vol.556 , pp. 244-248
    • Lin, S.1    Nascimento, E.M.2    Gajera, C.R.3
  • 73
    • 84859614232 scopus 로고    scopus 로고
    • Macrophage-derived Wnt opposes Notch signaling to specify hepatic progenitor cell fate in chronic liver disease
    • Boulter, L., Govaere, O., Bird, T.G., et al. Macrophage-derived Wnt opposes Notch signaling to specify hepatic progenitor cell fate in chronic liver disease. Nat Med 18 (2012), 572–579.
    • (2012) Nat Med , vol.18 , pp. 572-579
    • Boulter, L.1    Govaere, O.2    Bird, T.G.3
  • 74
    • 85025127585 scopus 로고    scopus 로고
    • Cholangiocytes act as facultative liver stem cells during impaired hepatocyte regeneration
    • Raven, A., Lu, W.Y., Man, T.Y., et al. Cholangiocytes act as facultative liver stem cells during impaired hepatocyte regeneration. Nature, 547, 2017, 350v354.
    • (2017) Nature , vol.547 , pp. 350v354
    • Raven, A.1    Lu, W.Y.2    Man, T.Y.3
  • 75
    • 80051926611 scopus 로고    scopus 로고
    • Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling
    • de Lau, W., Barker, N., Low, T.Y., et al. Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling. Nature 476 (2011), 293–297.
    • (2011) Nature , vol.476 , pp. 293-297
    • de Lau, W.1    Barker, N.2    Low, T.Y.3
  • 76
    • 84860765166 scopus 로고    scopus 로고
    • ZNRF3 promotes Wnt receptor turnover in an R-spondin-sensitive manner
    • Hao, H.X., Xie, Y., Zhang, Y., et al. ZNRF3 promotes Wnt receptor turnover in an R-spondin-sensitive manner. Nature 485 (2012), 195–200.
    • (2012) Nature , vol.485 , pp. 195-200
    • Hao, H.X.1    Xie, Y.2    Zhang, Y.3
  • 77
    • 84865517676 scopus 로고    scopus 로고
    • Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors
    • Koo, B.K., Spit, M., Jordens, I., et al. Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors. Nature 488 (2012), 665–669.
    • (2012) Nature , vol.488 , pp. 665-669
    • Koo, B.K.1    Spit, M.2    Jordens, I.3
  • 78
    • 20744450475 scopus 로고    scopus 로고
    • Alpha1-antitrypsin deficiency
    • Stoller, J.K., Aboussouan, L.S., Alpha1-antitrypsin deficiency. Lancet 365 (2005), 2225–2236.
    • (2005) Lancet , vol.365 , pp. 2225-2236
    • Stoller, J.K.1    Aboussouan, L.S.2
  • 79
    • 84879794922 scopus 로고    scopus 로고
    • Renal involvement and the role of Notch signalling in Alagille syndrome
    • Kamath, B.M., Spinner, N.B., Rosenblum, N.D., Renal involvement and the role of Notch signalling in Alagille syndrome. Nat Rev Nephrol 9 (2013), 409–418.
    • (2013) Nat Rev Nephrol , vol.9 , pp. 409-418
    • Kamath, B.M.1    Spinner, N.B.2    Rosenblum, N.D.3
  • 80
    • 85043237736 scopus 로고    scopus 로고
    • Mouse model of alagille syndrome and mechanisms of Jagged1 missense mutations
    • Andersson, E.R., Chivukula, I.V., Hankeova, S., et al. Mouse model of alagille syndrome and mechanisms of Jagged1 missense mutations. Gastroenterology 154 (2018), 1080–1095.
    • (2018) Gastroenterology , vol.154 , pp. 1080-1095
    • Andersson, E.R.1    Chivukula, I.V.2    Hankeova, S.3
  • 81
  • 82
    • 80054010196 scopus 로고    scopus 로고
    • Incidence of adenocarcinoma among patients with Barrett's esophagus
    • Hvid-Jensen, F., Pedersen, L., Drewes, A.M., et al. Incidence of adenocarcinoma among patients with Barrett's esophagus. N Engl J Med 365 (2011), 1375–1383.
    • (2011) N Engl J Med , vol.365 , pp. 1375-1383
    • Hvid-Jensen, F.1    Pedersen, L.2    Drewes, A.M.3
  • 83
    • 84940587003 scopus 로고    scopus 로고
    • Paired exome analysis of Barrett's esophagus and adenocarcinoma
    • Stachler, M.D., Taylor-Weiner, A., Peng, S., et al. Paired exome analysis of Barrett's esophagus and adenocarcinoma. Nat Genet 47 (2015), 1047–1055.
    • (2015) Nat Genet , vol.47 , pp. 1047-1055
    • Stachler, M.D.1    Taylor-Weiner, A.2    Peng, S.3
  • 84
    • 84940612958 scopus 로고    scopus 로고
    • Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma
    • Ross-Innes, C.S., Becq, J., Warren, A., et al. Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma. Nat Genet 47 (2015), 1038–1046.
    • (2015) Nat Genet , vol.47 , pp. 1038-1046
    • Ross-Innes, C.S.1    Becq, J.2    Warren, A.3
  • 85
    • 85042538756 scopus 로고    scopus 로고
    • Evolution of Barrett's esophagus through space and time at single-crypt and whole-biopsy levels
    • Martinez, P., Mallo, D., Paulson, T.G., et al. Evolution of Barrett's esophagus through space and time at single-crypt and whole-biopsy levels. Nat Commun, 9, 2018, 794.
    • (2018) Nat Commun , vol.9 , pp. 794
    • Martinez, P.1    Mallo, D.2    Paulson, T.G.3
  • 86
    • 84893931809 scopus 로고    scopus 로고
    • The stem cell organisation, and the proliferative and gene expression profile of Barrett's epithelium, replicates pyloric-type gastric glands
    • Lavery, D.L., Nicholson, A.M., Poulsom, R., et al. The stem cell organisation, and the proliferative and gene expression profile of Barrett's epithelium, replicates pyloric-type gastric glands. Gut 63 (2014), 1854–1863.
    • (2014) Gut , vol.63 , pp. 1854-1863
    • Lavery, D.L.1    Nicholson, A.M.2    Poulsom, R.3
  • 87
    • 83255176203 scopus 로고    scopus 로고
    • DNA methylation profiling in Barrett's esophagus and esophageal adenocarcinoma reveals unique methylation signatures and molecular subclasses
    • Kaz, A.M., Wong, C.J., Luo, Y., et al. DNA methylation profiling in Barrett's esophagus and esophageal adenocarcinoma reveals unique methylation signatures and molecular subclasses. Epigenetics 6 (2011), 1403–1412.
    • (2011) Epigenetics , vol.6 , pp. 1403-1412
    • Kaz, A.M.1    Wong, C.J.2    Luo, Y.3
  • 88
    • 85046122061 scopus 로고    scopus 로고
    • Methylation panel is a diagnostic biomarker for Barrett's oesophagus in endoscopic biopsies and non-endoscopic cytology specimens
    • Chettouh, H., Mowforth, O., Galeano-Dalmau, N., et al. Methylation panel is a diagnostic biomarker for Barrett's oesophagus in endoscopic biopsies and non-endoscopic cytology specimens. Gut 67 (2018), 1942–1949.
    • (2018) Gut , vol.67 , pp. 1942-1949
    • Chettouh, H.1    Mowforth, O.2    Galeano-Dalmau, N.3
  • 89
    • 84928974420 scopus 로고    scopus 로고
    • Prospective derivation of a living organoid biobank of colorectal cancer patients
    • van de Wetering, M., Francies, H.E., Francis, J.M., et al. Prospective derivation of a living organoid biobank of colorectal cancer patients. Cell 161 (2015), 933–945.
    • (2015) Cell , vol.161 , pp. 933-945
    • van de Wetering, M.1    Francies, H.E.2    Francis, J.M.3
  • 90
    • 84971516758 scopus 로고    scopus 로고
    • A colorectal tumor organoid library demonstrates progressive loss of niche factor requirements during tumorigenesis
    • Fujii, M., Shimokawa, M., Date, S., et al. A colorectal tumor organoid library demonstrates progressive loss of niche factor requirements during tumorigenesis. Cell Stem Cell 18 (2016), 827–838.
    • (2016) Cell Stem Cell , vol.18 , pp. 827-838
    • Fujii, M.1    Shimokawa, M.2    Date, S.3
  • 91
    • 84945386088 scopus 로고    scopus 로고
    • Preserved genetic diversity in organoids cultured from biopsies of human colorectal cancer metastases
    • Weeber, F., van de Wetering, M., Hoogstraat, M., et al. Preserved genetic diversity in organoids cultured from biopsies of human colorectal cancer metastases. Proc Natl Acad Sci U S A 112 (2015), 13308–13311.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 13308-13311
    • Weeber, F.1    van de Wetering, M.2    Hoogstraat, M.3
  • 92
    • 85012225053 scopus 로고    scopus 로고
    • Molecular dissection of colorectal cancer in pre-clinical models identifies biomarkers predicting sensitivity to EGFR inhibitors
    • Schutte, M., Risch, T., Abdavi-Azar, N., et al. Molecular dissection of colorectal cancer in pre-clinical models identifies biomarkers predicting sensitivity to EGFR inhibitors. Nat Commun, 8, 2017, 14262.
    • (2017) Nat Commun , vol.8 , pp. 14262
    • Schutte, M.1    Risch, T.2    Abdavi-Azar, N.3
  • 93
    • 85018414262 scopus 로고    scopus 로고
    • Personalized in vitro and in vivo cancer models to guide precision medicine
    • Pauli, C., Hopkins, B.D., Prandi, D., et al. Personalized in vitro and in vivo cancer models to guide precision medicine. Cancer Discov 7 (2017), 462–477.
    • (2017) Cancer Discov , vol.7 , pp. 462-477
    • Pauli, C.1    Hopkins, B.D.2    Prandi, D.3
  • 94
    • 85038087883 scopus 로고    scopus 로고
    • Non-canonical Hedgehog signaling is a positive regulator of the WNT pathway and is required for the survival of colon cancer stem cells
    • Regan, J.L., Schumacher, D., Staudte, S., et al. Non-canonical Hedgehog signaling is a positive regulator of the WNT pathway and is required for the survival of colon cancer stem cells. Cell Rep 21 (2017), 2813–2828.
    • (2017) Cell Rep , vol.21 , pp. 2813-2828
    • Regan, J.L.1    Schumacher, D.2    Staudte, S.3
  • 95
    • 85042318736 scopus 로고    scopus 로고
    • Patient-derived organoids model treatment response of metastatic gastrointestinal cancers
    • Vlachogiannis, G., Hedayat, S., Vatsiou, A., et al. Patient-derived organoids model treatment response of metastatic gastrointestinal cancers. Science 359 (2018), 920–926.
    • (2018) Science , vol.359 , pp. 920-926
    • Vlachogiannis, G.1    Hedayat, S.2    Vatsiou, A.3
  • 96
    • 85044527162 scopus 로고    scopus 로고
    • Intra-tumour diversification in colorectal cancer at the single-cell level
    • Roerink, S.F., Sasaki, N., Lee-Six, H., et al. Intra-tumour diversification in colorectal cancer at the single-cell level. Nature 556 (2018), 457–462.
    • (2018) Nature , vol.556 , pp. 457-462
    • Roerink, S.F.1    Sasaki, N.2    Lee-Six, H.3
  • 97
    • 85049142911 scopus 로고    scopus 로고
    • Human gastric cancer modelling using organoids
    • pii: gutjnl-2017-314549. doi: [Epub ahead of print]
    • Seidlitz, T., Merker, S.R., Rothe, A., et al. Human gastric cancer modelling using organoids. Gut, 2018 Apr 27 pii: gutjnl-2017-314549. doi: 10.1136/gutjnl-2017-314549. [Epub ahead of print].
    • (2018) Gut
    • Seidlitz, T.1    Merker, S.R.2    Rothe, A.3
  • 98
    • 85050811688 scopus 로고    scopus 로고
    • Divergent Routes toward Wnt and R-spondin niche independency during human gastric carcinogenesis
    • Nanki, K., Toshimitsu, K., Takano, A., et al. Divergent Routes toward Wnt and R-spondin niche independency during human gastric carcinogenesis. Cell 174 (2018), 856–869 e17.
    • (2018) Cell , vol.174 , pp. 856-869 e17
    • Nanki, K.1    Toshimitsu, K.2    Takano, A.3
  • 99
    • 85058484957 scopus 로고    scopus 로고
    • A comprehensive human gastric cancer organoid biobank captures tumor subtype heterogeneity and enables therapeutic screening
    • Yan, H.H.N., Siu, H.C., Law, S., et al. A comprehensive human gastric cancer organoid biobank captures tumor subtype heterogeneity and enables therapeutic screening. Cell Stem Cell 23 (2018), 882–897.e11.
    • (2018) Cell Stem Cell , vol.23 , pp. 882-897.e11
    • Yan, H.H.N.1    Siu, H.C.2    Law, S.3
  • 100
    • 85042645416 scopus 로고    scopus 로고
    • Successful creation of pancreatic cancer organoids by means of EUS-guided fine-needle biopsy sampling for personalized cancer treatment
    • Tiriac, H., Bucobo, J.C., Tzimas, D., et al. Successful creation of pancreatic cancer organoids by means of EUS-guided fine-needle biopsy sampling for personalized cancer treatment. Gastrointest Endosc 87 (2018), 1474–1480.
    • (2018) Gastrointest Endosc , vol.87 , pp. 1474-1480
    • Tiriac, H.1    Bucobo, J.C.2    Tzimas, D.3
  • 101
    • 85039071691 scopus 로고    scopus 로고
    • Human primary liver cancer-derived organoid cultures for disease modeling and drug screening
    • Broutier, L., Mastrogiovanni, G., Verstegen, M.M., et al. Human primary liver cancer-derived organoid cultures for disease modeling and drug screening. Nat Med 23 (2017), 1424–1435.
    • (2017) Nat Med , vol.23 , pp. 1424-1435
    • Broutier, L.1    Mastrogiovanni, G.2    Verstegen, M.M.3
  • 102
    • 85041944454 scopus 로고    scopus 로고
    • Induction of differentiation of intrahepatic cholangiocarcinoma cells to functional hepatocytes using an organoid culture system
    • Saito, Y., Nakaoka, T., Muramatsu, T., et al. Induction of differentiation of intrahepatic cholangiocarcinoma cells to functional hepatocytes using an organoid culture system. Sci Rep, 8, 2018, 2821.
    • (2018) Sci Rep , vol.8 , pp. 2821
    • Saito, Y.1    Nakaoka, T.2    Muramatsu, T.3
  • 104
    • 85044623848 scopus 로고    scopus 로고
    • Comprehensive characterization of cancer driver genes and mutations
    • Bailey, M.H., Tokheim, C., Porta-Pardo, E., et al. Comprehensive characterization of cancer driver genes and mutations. Cell 173 (2018), 371–385 e18.
    • (2018) Cell , vol.173 , pp. 371-385 e18
    • Bailey, M.H.1    Tokheim, C.2    Porta-Pardo, E.3
  • 105
    • 85044966521 scopus 로고    scopus 로고
    • Oncogenic signaling pathways in The Cancer Genome Atlas
    • Sanchez-Vega, F., Mina, M., Armenia, J., et al. Oncogenic signaling pathways in The Cancer Genome Atlas. Cell 173 (2018), 321–337 e10.
    • (2018) Cell , vol.173 , pp. 321-337 e10
    • Sanchez-Vega, F.1    Mina, M.2    Armenia, J.3
  • 106
    • 85044904369 scopus 로고    scopus 로고
    • Comparative molecular analysis of gastrointestinal adenocarcinomas
    • Liu, Y., Sethi, N.S., Hinoue, T., et al. Comparative molecular analysis of gastrointestinal adenocarcinomas. Cancer Cell 33 (2018), 721–735 e8.
    • (2018) Cancer Cell , vol.33 , pp. 721-735 e8
    • Liu, Y.1    Sethi, N.S.2    Hinoue, T.3
  • 107
    • 84878760040 scopus 로고    scopus 로고
    • Growing self-organizing mini-guts from a single intestinal stem cell: mechanism and applications
    • Sato, T., Clevers, H., Growing self-organizing mini-guts from a single intestinal stem cell: mechanism and applications. Science 340 (2013), 1190–1194.
    • (2013) Science , vol.340 , pp. 1190-1194
    • Sato, T.1    Clevers, H.2
  • 108
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • The Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon and rectal cancer. Nature 487 (2012), 330–337.
    • (2012) Nature , vol.487 , pp. 330-337
  • 109
    • 85026888109 scopus 로고    scopus 로고
    • Integrated genomic characterization of pancreatic ductal adenocarcinoma
    • The Cancer Genome Atlas Research Network. Integrated genomic characterization of pancreatic ductal adenocarcinoma. Cancer Cell 32 (2017), 185–203 e13.
    • (2017) Cancer Cell , vol.32 , pp. 185-203 e13
  • 110
    • 84907270779 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of gastric adenocarcinoma
    • The Cancer Genome Atlas Research Network. Comprehensive molecular characterization of gastric adenocarcinoma. Nature 513 (2014), 202–209.
    • (2014) Nature , vol.513 , pp. 202-209
  • 111
    • 84960194345 scopus 로고    scopus 로고
    • Genomic analyses identify molecular subtypes of pancreatic cancer
    • Bailey, P., Chang, D.K., Nones, K., et al. Genomic analyses identify molecular subtypes of pancreatic cancer. Nature 531 (2016), 47–52.
    • (2016) Nature , vol.531 , pp. 47-52
    • Bailey, P.1    Chang, D.K.2    Nones, K.3
  • 112
    • 84978999486 scopus 로고    scopus 로고
    • GATA6 regulates EMT and tumour dissemination, and is a marker of response to adjuvant chemotherapy in pancreatic cancer
    • Martinelli, P., Carrillo-de Santa Pau, E., Cox, T., et al. GATA6 regulates EMT and tumour dissemination, and is a marker of response to adjuvant chemotherapy in pancreatic cancer. Gut 66 (2017), 1665–1676.
    • (2017) Gut , vol.66 , pp. 1665-1676
    • Martinelli, P.1    Carrillo-de Santa Pau, E.2    Cox, T.3
  • 113
    • 39149144034 scopus 로고    scopus 로고
    • Stem cells and niches: mechanisms that promote stem cell maintenance throughout life
    • Morrison, S.J., Spradling, A.C., Stem cells and niches: mechanisms that promote stem cell maintenance throughout life. Cell 132 (2008), 598–611.
    • (2008) Cell , vol.132 , pp. 598-611
    • Morrison, S.J.1    Spradling, A.C.2
  • 114
    • 36248962105 scopus 로고    scopus 로고
    • The genomic landscapes of human breast and colorectal cancers
    • Wood, L.D., Parsons, D.W., Jones, S., et al. The genomic landscapes of human breast and colorectal cancers. Science 318 (2007), 1108–1113.
    • (2007) Science , vol.318 , pp. 1108-1113
    • Wood, L.D.1    Parsons, D.W.2    Jones, S.3
  • 115
    • 0025312728 scopus 로고
    • A genetic model for colorectal tumorigenesis
    • Fearon, E.R., Vogelstein, B., A genetic model for colorectal tumorigenesis. Cell 61 (1990), 759–767.
    • (1990) Cell , vol.61 , pp. 759-767
    • Fearon, E.R.1    Vogelstein, B.2
  • 116
    • 85016113409 scopus 로고    scopus 로고
    • Genetic dissection of colorectal cancer progression by orthotopic transplantation of engineered cancer organoids
    • Fumagalli, A., Drost, J., Suijkerbuijk, S.J., et al. Genetic dissection of colorectal cancer progression by orthotopic transplantation of engineered cancer organoids. Proc Natl Acad Sci U S A 114 (2017), E2357–E2364.
    • (2017) Proc Natl Acad Sci U S A , vol.114 , pp. E2357-E2364
    • Fumagalli, A.1    Drost, J.2    Suijkerbuijk, S.J.3
  • 117
    • 77951647898 scopus 로고    scopus 로고
    • Role of the serrated pathway in colorectal cancer pathogenesis
    • Leggett, B., Whitehall, V., Role of the serrated pathway in colorectal cancer pathogenesis. Gastroenterology 138 (2010), 2088–2100.
    • (2010) Gastroenterology , vol.138 , pp. 2088-2100
    • Leggett, B.1    Whitehall, V.2
  • 118
    • 84977616813 scopus 로고    scopus 로고
    • TGFbeta signaling directs serrated adenomas to the mesenchymal colorectal cancer subtype
    • Fessler, E., Drost, J., van Hooff, S.R., et al. TGFbeta signaling directs serrated adenomas to the mesenchymal colorectal cancer subtype. EMBO Mol Med 8 (2016), 745–760.
    • (2016) EMBO Mol Med , vol.8 , pp. 745-760
    • Fessler, E.1    Drost, J.2    van Hooff, S.R.3
  • 119
    • 79958828886 scopus 로고    scopus 로고
    • DNA mismatch repair status and colon cancer recurrence and survival in clinical trials of 5-fluorouracil-based adjuvant therapy
    • Sinicrope, F.A., Foster, N.R., Thibodeau, S.N., et al. DNA mismatch repair status and colon cancer recurrence and survival in clinical trials of 5-fluorouracil-based adjuvant therapy. J Natl Cancer Inst 103 (2011), 863–875.
    • (2011) J Natl Cancer Inst , vol.103 , pp. 863-875
    • Sinicrope, F.A.1    Foster, N.R.2    Thibodeau, S.N.3
  • 120
    • 75749102647 scopus 로고    scopus 로고
    • Prognostic role of KRAS and BRAF in stage II and III resected colon cancer: results of the translational study on the PETACC-3, EORTC 40993, SAKK 60-00 trial
    • Roth, A.D., Tejpar, S., Delorenzi, M., et al. Prognostic role of KRAS and BRAF in stage II and III resected colon cancer: results of the translational study on the PETACC-3, EORTC 40993, SAKK 60-00 trial. J Clin Oncol 28 (2010), 466–474.
    • (2010) J Clin Oncol , vol.28 , pp. 466-474
    • Roth, A.D.1    Tejpar, S.2    Delorenzi, M.3
  • 121
    • 85014792012 scopus 로고    scopus 로고
    • Reconstituting development of pancreatic intraepithelial neoplasia from primary human pancreas duct cells
    • Lee, J., Snyder, E.R., Liu, Y., et al. Reconstituting development of pancreatic intraepithelial neoplasia from primary human pancreas duct cells. Nat Commun, 8, 2017, 14686.
    • (2017) Nat Commun , vol.8 , pp. 14686
    • Lee, J.1    Snyder, E.R.2    Liu, Y.3
  • 122
    • 12644292106 scopus 로고
    • The two histological main types of gastric carcinoma: diffuse and so-called intestinal-type carcinoma. an attempt at a histo-clinical classification
    • Lauren, P., The two histological main types of gastric carcinoma: diffuse and so-called intestinal-type carcinoma. an attempt at a histo-clinical classification. Acta Pathol Microbiol Scand 64 (1965), 31–49.
    • (1965) Acta Pathol Microbiol Scand , vol.64 , pp. 31-49
    • Lauren, P.1
  • 123
    • 79952370202 scopus 로고    scopus 로고
    • The cancer stem cell: premises, promises and challenges
    • Clevers, H., The cancer stem cell: premises, promises and challenges. Nat Med 17 (2011), 313–319.
    • (2011) Nat Med , vol.17 , pp. 313-319
    • Clevers, H.1
  • 124
    • 84971254606 scopus 로고    scopus 로고
    • Cancer stem cells: basic concepts and therapeutic implications
    • Nassar, D., Blanpain, C., Cancer stem cells: basic concepts and therapeutic implications. Annu Rev Pathol 11 (2016), 47–76.
    • (2016) Annu Rev Pathol , vol.11 , pp. 47-76
    • Nassar, D.1    Blanpain, C.2
  • 125
    • 77956214387 scopus 로고    scopus 로고
    • Tumor-initiating cells are rare in many human tumors
    • Ishizawa, K., Rasheed, Z.A., Karisch, R., et al. Tumor-initiating cells are rare in many human tumors. Cell Stem Cell 7 (2010), 279–282.
    • (2010) Cell Stem Cell , vol.7 , pp. 279-282
    • Ishizawa, K.1    Rasheed, Z.A.2    Karisch, R.3
  • 126
    • 69449096005 scopus 로고    scopus 로고
    • Heterogeneity in cancer: cancer stem cells versus clonal evolution
    • Shackleton, M., Quintana, E., Fearon, E.R., et al. Heterogeneity in cancer: cancer stem cells versus clonal evolution. Cell 138 (2009), 822–829.
    • (2009) Cell , vol.138 , pp. 822-829
    • Shackleton, M.1    Quintana, E.2    Fearon, E.R.3
  • 127
    • 85019245514 scopus 로고    scopus 로고
    • Visualization and targeting of LGR5+ human colon cancer stem cells
    • Shimokawa, M., Ohta, Y., Nishikori, S., et al. Visualization and targeting of LGR5+ human colon cancer stem cells. Nature 545 (2017), 187–192.
    • (2017) Nature , vol.545 , pp. 187-192
    • Shimokawa, M.1    Ohta, Y.2    Nishikori, S.3
  • 128
    • 85018978867 scopus 로고    scopus 로고
    • A genome editing approach to study cancer stem cells in human tumors
    • Cortina, C., Turon, G., Stork, D., et al. A genome editing approach to study cancer stem cells in human tumors. EMBO Mol Med 9 (2017), 869–879.
    • (2017) EMBO Mol Med , vol.9 , pp. 869-879
    • Cortina, C.1    Turon, G.2    Stork, D.3
  • 129
    • 84929082100 scopus 로고    scopus 로고
    • Somatic stem cell heterogeneity: diversity in the blood, skin and intestinal stem cell compartments
    • Goodell, M.A., Nguyen, H., Shroyer, N., Somatic stem cell heterogeneity: diversity in the blood, skin and intestinal stem cell compartments. Nat Rev Mol Cell Biol 16 (2015), 299–309.
    • (2015) Nat Rev Mol Cell Biol , vol.16 , pp. 299-309
    • Goodell, M.A.1    Nguyen, H.2    Shroyer, N.3
  • 130
    • 84961392561 scopus 로고    scopus 로고
    • Tissue-specific designs of stem cell hierarchies
    • Visvader, J.E., Clevers, H., Tissue-specific designs of stem cell hierarchies. Nat Cell Biol 18 (2016), 349–355.
    • (2016) Nat Cell Biol , vol.18 , pp. 349-355
    • Visvader, J.E.1    Clevers, H.2
  • 131
    • 85017964233 scopus 로고    scopus 로고
    • A distinct role for Lgr5+ stem cells in primary and metastatic colon cancer
    • de Sousa e Melo, F., Kurtova, A.V., Harnoss, J.M., et al. A distinct role for Lgr5+ stem cells in primary and metastatic colon cancer. Nature 543 (2017), 676–680.
    • (2017) Nature , vol.543 , pp. 676-680
    • de Sousa e Melo, F.1    Kurtova, A.V.2    Harnoss, J.M.3
  • 132
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L.B., Nik-Zainal, S., Wedge, D.C., et al. Signatures of mutational processes in human cancer. Nature 500 (2013), 415–421.
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1    Nik-Zainal, S.2    Wedge, D.C.3
  • 133
    • 84906303775 scopus 로고    scopus 로고
    • Mechanisms underlying mutational signatures in human cancers
    • Helleday, T., Eshtad, S., Nik-Zainal, S., Mechanisms underlying mutational signatures in human cancers. Nat Rev Genet 15 (2014), 585–598.
    • (2014) Nat Rev Genet , vol.15 , pp. 585-598
    • Helleday, T.1    Eshtad, S.2    Nik-Zainal, S.3
  • 134
    • 84907737648 scopus 로고    scopus 로고
    • Genome sequencing of normal cells reveals developmental lineages and mutational processes
    • Behjati, S., Huch, M., van Boxtel, R., et al. Genome sequencing of normal cells reveals developmental lineages and mutational processes. Nature 513 (2014), 422–425.
    • (2014) Nature , vol.513 , pp. 422-425
    • Behjati, S.1    Huch, M.2    van Boxtel, R.3
  • 135
    • 85020754993 scopus 로고    scopus 로고
    • Enhanced rate of acquisition of point mutations in mouse intestinal adenomas compared to normal tissue
    • Lugli, N., Dionellis, V.S., Ordonez-Moran, P., et al. Enhanced rate of acquisition of point mutations in mouse intestinal adenomas compared to normal tissue. Cell Rep 19 (2017), 2185–2192.
    • (2017) Cell Rep , vol.19 , pp. 2185-2192
    • Lugli, N.1    Dionellis, V.S.2    Ordonez-Moran, P.3
  • 136
    • 84991669713 scopus 로고    scopus 로고
    • Tissue-specific mutation accumulation in human adult stem cells during life
    • Blokzijl, F., de Ligt, J., Jager, M., et al. Tissue-specific mutation accumulation in human adult stem cells during life. Nature 538 (2016), 260–264.
    • (2016) Nature , vol.538 , pp. 260-264
    • Blokzijl, F.1    de Ligt, J.2    Jager, M.3
  • 137
    • 85029574202 scopus 로고    scopus 로고
    • Use of CRISPR-modified human stem cell organoids to study the origin of mutational signatures in cancer
    • Drost, J., van Boxtel, R., Blokzijl, F., et al. Use of CRISPR-modified human stem cell organoids to study the origin of mutational signatures in cancer. Science 358 (2017), 234–238.
    • (2017) Science , vol.358 , pp. 234-238
    • Drost, J.1    van Boxtel, R.2    Blokzijl, F.3
  • 138
    • 84973621780 scopus 로고    scopus 로고
    • Understanding mutagenesis through delineation of mutational signatures in human cancer
    • Petljak, M., Alexandrov, L.B., Understanding mutagenesis through delineation of mutational signatures in human cancer. Carcinogenesis 37 (2016), 531–540.
    • (2016) Carcinogenesis , vol.37 , pp. 531-540
    • Petljak, M.1    Alexandrov, L.B.2
  • 139
    • 84862777784 scopus 로고    scopus 로고
    • Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5(+) stem cell
    • Yui, S., Nakamura, T., Sato, T., et al. Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5(+) stem cell. Nat Med 18 (2012), 618–623.
    • (2012) Nat Med , vol.18 , pp. 618-623
    • Yui, S.1    Nakamura, T.2    Sato, T.3
  • 140
    • 84906093308 scopus 로고    scopus 로고
    • Small intestinal stem cell identity is maintained with functional Paneth cells in heterotopically grafted epithelium onto the colon
    • Fukuda, M., Mizutani, T., Mochizuki, W., et al. Small intestinal stem cell identity is maintained with functional Paneth cells in heterotopically grafted epithelium onto the colon. Genes Dev 28 (2014), 1752–1757.
    • (2014) Genes Dev , vol.28 , pp. 1752-1757
    • Fukuda, M.1    Mizutani, T.2    Mochizuki, W.3
  • 141
    • 85044746053 scopus 로고    scopus 로고
    • Reconstruction of the human colon epithelium in vivo
    • Sugimoto, S., Ohta, Y., Fujii, M., et al. Reconstruction of the human colon epithelium in vivo. Cell Stem Cell 22 (2018), 171–176 e5.
    • (2018) Cell Stem Cell , vol.22 , pp. 171-176 e5
    • Sugimoto, S.1    Ohta, Y.2    Fujii, M.3
  • 142
    • 84928789447 scopus 로고    scopus 로고
    • Personalized medicine: time for one-person trials
    • Schork, N.J., Personalized medicine: time for one-person trials. Nature 520 (2015), 609–611.
    • (2015) Nature , vol.520 , pp. 609-611
    • Schork, N.J.1
  • 143
    • 85027929550 scopus 로고    scopus 로고
    • Towards precision medicine in the clinic: from biomarker discovery to novel therapeutics
    • Collins, D.C., Sundar, R., Lim, J.S.J., et al. Towards precision medicine in the clinic: from biomarker discovery to novel therapeutics. Trends Pharmacol Sci 38 (2017), 25–40.
    • (2017) Trends Pharmacol Sci , vol.38 , pp. 25-40
    • Collins, D.C.1    Sundar, R.2    Lim, J.S.J.3
  • 144
    • 85001075487 scopus 로고    scopus 로고
    • Targeting mutant RAS in patient-derived colorectal cancer organoids by combinatorial drug screening
    • Verissimo, C.S., Overmeer, R.M., Ponsioen, B., et al. Targeting mutant RAS in patient-derived colorectal cancer organoids by combinatorial drug screening. Elife, 5, 2016.
    • (2016) Elife , vol.5
    • Verissimo, C.S.1    Overmeer, R.M.2    Ponsioen, B.3
  • 145
    • 85044621473 scopus 로고    scopus 로고
    • Tumor evolution and drug response in patient-derived organoid models of bladder cancer
    • Lee, S.H., Hu, W., Matulay, J.T., et al. Tumor evolution and drug response in patient-derived organoid models of bladder cancer. Cell 173 (2018), 515–528 e17.
    • (2018) Cell , vol.173 , pp. 515-528 e17
    • Lee, S.H.1    Hu, W.2    Matulay, J.T.3
  • 146
    • 85043599631 scopus 로고    scopus 로고
    • Formation of human colonic crypt array by application of chemical gradients across a shaped epithelial monolayer
    • Wang, Y., Kim, R., Gunasekara, D.B., et al. Formation of human colonic crypt array by application of chemical gradients across a shaped epithelial monolayer. Cell Mol Gastroenterol Hepatol 5 (2018), 113–130.
    • (2018) Cell Mol Gastroenterol Hepatol , vol.5 , pp. 113-130
    • Wang, Y.1    Kim, R.2    Gunasekara, D.B.3
  • 147
    • 84892765883 scopus 로고    scopus 로고
    • Genome-scale CRISPR-Cas9 knockout screening in human cells
    • Shalem, O., Sanjana, N.E., Hartenian, E., et al. Genome-scale CRISPR-Cas9 knockout screening in human cells. Science 343 (2014), 84–87.
    • (2014) Science , vol.343 , pp. 84-87
    • Shalem, O.1    Sanjana, N.E.2    Hartenian, E.3
  • 148
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang, T., Wei, J.J., Sabatini, D.M., et al. Genetic screens in human cells using the CRISPR-Cas9 system. Science 343 (2014), 80–84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3
  • 149
    • 85044959586 scopus 로고    scopus 로고
    • Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
    • Hu, J.H., Miller, S.M., Geurts, M.H., et al. Evolved Cas9 variants with broad PAM compatibility and high DNA specificity. Nature 556 (2018), 57–63.
    • (2018) Nature , vol.556 , pp. 57-63
    • Hu, J.H.1    Miller, S.M.2    Geurts, M.H.3
  • 150
    • 85053081382 scopus 로고    scopus 로고
    • Optimized base editors enable efficient editing in cells, organoids and mice
    • Zafra, M.P., Schatoff, E.M., Katti, A., et al. Optimized base editors enable efficient editing in cells, organoids and mice. Nat Biotechnol 36 (2018), 888–893.
    • (2018) Nat Biotechnol , vol.36 , pp. 888-893
    • Zafra, M.P.1    Schatoff, E.M.2    Katti, A.3


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