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Volumn 72, Issue 23, 2015, Pages 4523-4544

Mechanism, factors, and physiological role of nonsense-mediated mRNA decay

Author keywords

Exon junction complex; Genetic disease; NMD; Quality control; UPF1

Indexed keywords

AMINOGLYCOSIDE; ATALUREN; GENTAMICIN; MESSENGER RNA; PHOSPHOPROTEIN; PHOSPHOPROTEIN PHOSPHATASE 2A; 3' UNTRANSLATED REGION; DEAD BOX PROTEIN; EIF4A3 PROTEIN, HUMAN; INITIATION FACTOR 4A; RBM8A PROTEIN, HUMAN; RNA BINDING PROTEIN; SMG6 PROTEIN, HUMAN; STOP CODON; TELOMERASE; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR; UPF1 PROTEIN, HUMAN; UPF2 PROTEIN, HUMAN; UPF3A PROTEIN, HUMAN;

EID: 84946482619     PISSN: 1420682X     EISSN: 14209071     Source Type: Journal    
DOI: 10.1007/s00018-015-2017-9     Document Type: Review
Times cited : (74)

References (222)
  • 1
    • 59649124310 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay (NMD) mechanisms
    • 1:CAS:528:DC%2BD1MXhtlyjtL4%3D 19190664
    • Brogna S, Wen J (2009) Nonsense-mediated mRNA decay (NMD) mechanisms. Nat Struct Mol Biol 16:107-113. doi: 10.1038/nsmb.1550
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 107-113
    • Brogna, S.1    Wen, J.2
  • 2
    • 84907189359 scopus 로고    scopus 로고
    • The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay
    • 1:CAS:528:DC%2BC2cXhslWhs7jO 25147240
    • Fatscher T, Boehm V, Weiche B, Gehring NH (2014) The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay. RNA 20:1579-1592. doi: 10.1261/rna.044933.114
    • (2014) RNA , vol.20 , pp. 1579-1592
    • Fatscher, T.1    Boehm, V.2    Weiche, B.3    Gehring, N.H.4
  • 3
    • 40949148553 scopus 로고    scopus 로고
    • Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
    • 1:CAS:528:DC%2BD1cXislGrs7Y%3D 18256688
    • Ivanov PV, Gehring NH, Kunz JB, Hentze MW, Kulozik AE (2008) Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J 27:736-747. doi: 10.1038/emboj.2008.17
    • (2008) EMBO J , vol.27 , pp. 736-747
    • Ivanov, P.V.1    Gehring, N.H.2    Kunz, J.B.3    Hentze, M.W.4    Kulozik, A.E.5
  • 4
    • 84929054432 scopus 로고    scopus 로고
    • Eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay by two genetically separable mechanisms
    • Joncourt R, Eberle AB, Rufener SC, Muhlemann O (2014) Eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay by two genetically separable mechanisms. PLoS One 9:e104391. doi: 10.1371/journal.pone.0104391
    • (2014) PLoS One , vol.9 , pp. e104391
    • Joncourt, R.1    Eberle, A.B.2    Rufener, S.C.3    Muhlemann, O.4
  • 5
    • 43249084802 scopus 로고    scopus 로고
    • A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
    • Singh G, Rebbapragada I, Lykke-Andersen J (2008) A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol 6:e111. doi: 10.1371/journal.pbio.0060111
    • (2008) PLoS Biol , vol.6 , pp. e111
    • Singh, G.1    Rebbapragada, I.2    Lykke-Andersen, J.3
  • 6
    • 4344573158 scopus 로고    scopus 로고
    • The effect of eukaryotic release factor depletion on translation termination in human cell lines
    • 1:CAS:528:DC%2BD2cXnsVyhsrs%3D 15326224
    • Janzen DM, Geballe AP (2004) The effect of eukaryotic release factor depletion on translation termination in human cell lines. Nucleic Acids Res 32:4491-4502. doi: 10.1093/nar/gkh791
    • (2004) Nucleic Acids Res , vol.32 , pp. 4491-4502
    • Janzen, D.M.1    Geballe, A.P.2
  • 7
    • 21744448013 scopus 로고    scopus 로고
    • Involvement of human release factors eRF3a and eRF3b in translation termination and regulation of the termination complex formation
    • 1:CAS:528:DC%2BD2MXmvVeit74%3D 15987998
    • Chauvin C, Salhi S, Le Goff C, Viranaicken W, Diop D, Jean-Jean O (2005) Involvement of human release factors eRF3a and eRF3b in translation termination and regulation of the termination complex formation. Mol Cell Biol 25:5801-5811. doi: 10.1128/MCB.25.14.5801-5811.2005
    • (2005) Mol Cell Biol , vol.25 , pp. 5801-5811
    • Chauvin, C.1    Salhi, S.2    Le Goff, C.3    Viranaicken, W.4    Diop, D.5    Jean-Jean, O.6
  • 8
    • 0032575550 scopus 로고    scopus 로고
    • Molecular cloning of a novel member of the eukaryotic polypeptide chain-releasing factors (eRF) - Its identification as eRF3 interacting with eRF1
    • 1:CAS:528:DyaK1cXlvValsLo%3D 9712840
    • Hoshino S, Imai M, Mizutani M, Kikuchi Y, Hanaoka F, Ui M, Katada T (1998) Molecular cloning of a novel member of the eukaryotic polypeptide chain-releasing factors (eRF) - Its identification as eRF3 interacting with eRF1. J Biol Chem 273:22254-22259. doi: 10.1074/jbc.273.35.22254
    • (1998) J Biol Chem , vol.273 , pp. 22254-22259
    • Hoshino, S.1    Imai, M.2    Mizutani, M.3    Kikuchi, Y.4    Hanaoka, F.5    Ui, M.6    Katada, T.7
  • 9
    • 0024790320 scopus 로고
    • A human homolog of the yeast Gst1-gene codes for a Gtp-binding protein and is expressed in a proliferation-dependent manner in mammalian-cells
    • 402068 1:CAS:528:DyaK3cXhvFaqsLY%3D 2511002
    • Hoshino S, Miyazawa H, Enomoto T, Hanaoka F, Kikuchi Y, Kikuchi A, Ui M (1989) A human homolog of the yeast Gst1-gene codes for a Gtp-binding protein and is expressed in a proliferation-dependent manner in mammalian-cells. EMBO J 8:3807-3814
    • (1989) EMBO J , vol.8 , pp. 3807-3814
    • Hoshino, S.1    Miyazawa, H.2    Enomoto, T.3    Hanaoka, F.4    Kikuchi, Y.5    Kikuchi, A.6    Ui, M.7
  • 10
    • 0034826629 scopus 로고    scopus 로고
    • The polypeptide chain release factor eRF1 specifically contacts the s(4)UGA stop codon located in the A site of eukaryotic ribosomes
    • 1:CAS:528:DC%2BD3MXktVSkt7k%3D 11358506
    • Chavatte L, Frolova L, Kisselev L, Favre A (2001) The polypeptide chain release factor eRF1 specifically contacts the s(4)UGA stop codon located in the A site of eukaryotic ribosomes. Eur J Biochem 268:2896-2904
    • (2001) Eur J Biochem , vol.268 , pp. 2896-2904
    • Chavatte, L.1    Frolova, L.2    Kisselev, L.3    Favre, A.4
  • 12
    • 0032840382 scopus 로고    scopus 로고
    • Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis
    • 1:CAS:528:DyaK1MXltFCmsrs%3D 10445876
    • Frolova LY, Tsivkovskii RY, Sivolobova GF, Oparina NY, Serpinsky OI, Blinov VM, Tatkov SI, Kisselev LL (1999) Mutations in the highly conserved GGQ motif of class 1 polypeptide release factors abolish ability of human eRF1 to trigger peptidyl-tRNA hydrolysis. RNA 5:1014-1020. doi: 10.1017/s135583829999043x
    • (1999) RNA , vol.5 , pp. 1014-1020
    • Frolova, L.Y.1    Tsivkovskii, R.Y.2    Sivolobova, G.F.3    Oparina, N.Y.4    Serpinsky, O.I.5    Blinov, V.M.6    Tatkov, S.I.7    Kisselev, L.L.8
  • 13
    • 0034603210 scopus 로고    scopus 로고
    • The crystal structure of human eukaryotic release factor eRF1 - Mechanism of stop codon recognition and peptidyl-tRNA hydrolysis
    • 1:CAS:528:DC%2BD3cXhtFKjtLc%3D 10676813
    • Song H, Mugnier P, Das AK, Webb HM, Evans DR, Tuite MF, Hemmings BA, Barford D (2000) The crystal structure of human eukaryotic release factor eRF1 - mechanism of stop codon recognition and peptidyl-tRNA hydrolysis. Cell 100:311-321
    • (2000) Cell , vol.100 , pp. 311-321
    • Song, H.1    Mugnier, P.2    Das, A.K.3    Webb, H.M.4    Evans, D.R.5    Tuite, M.F.6    Hemmings, B.A.7    Barford, D.8
  • 14
    • 0029145925 scopus 로고
    • Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3
    • 394485 1:CAS:528:DyaK2MXnvVektrc%3D 7664746
    • Zhouravleva G, Frolova L, Le Goff X, Le Guellec R, Inge-Vechtomov S, Kisselev L, Philippe M (1995) Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J 14:4065-4072
    • (1995) EMBO J , vol.14 , pp. 4065-4072
    • Zhouravleva, G.1    Frolova, L.2    Le Goff, X.3    Le Guellec, R.4    Inge-Vechtomov, S.5    Kisselev, L.6    Philippe, M.7
  • 15
    • 4344677977 scopus 로고    scopus 로고
    • GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination
    • 1:CAS:528:DC%2BD2cXntVKhu7Y%3D 15314182
    • Salas-Marco J, Bedwell DM (2004) GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination. Mol Cell Biol 24:7769-7778. doi: 10.1128/MCB.24.17.7769-7778.2004
    • (2004) Mol Cell Biol , vol.24 , pp. 7769-7778
    • Salas-Marco, J.1    Bedwell, D.M.2
  • 16
    • 19244364778 scopus 로고    scopus 로고
    • Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase
    • 1369376 1:CAS:528:DyaK28XjtFCmurk%3D 8634914
    • Frolova L, LeGoff X, Zhouravleva G, Davydova E, Philippe M, Kisselev L (1996) Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase. RNA 2:334-341
    • (1996) RNA , vol.2 , pp. 334-341
    • Frolova, L.1    LeGoff, X.2    Zhouravleva, G.3    Davydova, E.4    Philippe, M.5    Kisselev, L.6
  • 17
    • 33744993160 scopus 로고    scopus 로고
    • In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3
    • 1:CAS:528:DC%2BD28XmsVOms7s%3D 16777602
    • Alkalaeva EZ, Pisarev AV, Frolova LY, Kisselev LL, Pestova TV (2006) In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3. Cell 125:1125-1136. doi: 10.1016/j.cell.2006.04.035
    • (2006) Cell , vol.125 , pp. 1125-1136
    • Alkalaeva, E.Z.1    Pisarev, A.V.2    Frolova, L.Y.3    Kisselev, L.L.4    Pestova, T.V.5
  • 19
    • 79952750280 scopus 로고    scopus 로고
    • Ribosome recycling depends on a mechanistic link between the FeS cluster domain and a conformational switch of the twin-ATPase ABCE1
    • 1:CAS:528:DC%2BC3MXislGhs7s%3D 21292982
    • Barthelme D, Dinkelaker S, Albers SV, Londei P, Ermler U, Tampe R (2011) Ribosome recycling depends on a mechanistic link between the FeS cluster domain and a conformational switch of the twin-ATPase ABCE1. Proc Natl Acad Sci USA 108:3228-3233. doi: 10.1073/pnas.1015953108
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 3228-3233
    • Barthelme, D.1    Dinkelaker, S.2    Albers, S.V.3    Londei, P.4    Ermler, U.5    Tampe, R.6
  • 21
    • 0022766180 scopus 로고
    • mRNA polyadenylate-binding protein: Gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence
    • 367862 1:CAS:528:DyaL28Xlt1ylt7k%3D 3537727
    • Adam SA, Nakagawa T, Swanson MS, Woodruff TK, Dreyfuss G (1986) mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol Cell Biol 6:2932-2943
    • (1986) Mol Cell Biol , vol.6 , pp. 2932-2943
    • Adam, S.A.1    Nakagawa, T.2    Swanson, M.S.3    Woodruff, T.K.4    Dreyfuss, G.5
  • 22
    • 0023053585 scopus 로고
    • A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins - Domain-structure and expression
    • 1:CAS:528:DyaL28Xlt1ymurg%3D 3518950
    • Sachs AB, Bond MW, Kornberg RD (1986) A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins - domain-structure and expression. Cell 45:827-835. doi: 10.1016/0092-8674(86)90557-X
    • (1986) Cell , vol.45 , pp. 827-835
    • Sachs, A.B.1    Bond, M.W.2    Kornberg, R.D.3
  • 23
    • 0033578927 scopus 로고    scopus 로고
    • Recognition of polyadenylate RNA by the poly(A)-binding protein
    • 1:CAS:528:DyaK1MXmt1Grs7c%3D 10499800
    • Deo RC, Bonanno JB, Sonenberg N, Burley SK (1999) Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell 98:835-845
    • (1999) Cell , vol.98 , pp. 835-845
    • Deo, R.C.1    Bonanno, J.B.2    Sonenberg, N.3    Burley, S.K.4
  • 24
    • 0036759339 scopus 로고    scopus 로고
    • Poly(A)-binding protein and eRF3 are associated in vivo in human and Xenopus cells
    • 1:CAS:528:DC%2BD3sXptFGl 12489690
    • Cosson B, Berkova N, Couturier A, Chabelskaya S, Philippe M, Zhouravleva G (2002) Poly(A)-binding protein and eRF3 are associated in vivo in human and Xenopus cells. Biol Cell 94:205-216. doi: 10.1016/S0248-4900(02)01194-2
    • (2002) Biol Cell , vol.94 , pp. 205-216
    • Cosson, B.1    Berkova, N.2    Couturier, A.3    Chabelskaya, S.4    Philippe, M.5    Zhouravleva, G.6
  • 25
    • 0035836735 scopus 로고    scopus 로고
    • Structure and function of the C-terminal PABC domain of human poly(A)-binding protein
    • 1:CAS:528:DC%2BD3MXjtVagtrw%3D 11287632
    • Kozlov G, Trempe JF, Khaleghpour K, Kahvejian A, Ekiel I, Gehring K (2001) Structure and function of the C-terminal PABC domain of human poly(A)-binding protein. Proc Natl Acad Sci USA 98:4409-4413. doi: 10.1073/pnas.071024998
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4409-4413
    • Kozlov, G.1    Trempe, J.F.2    Khaleghpour, K.3    Kahvejian, A.4    Ekiel, I.5    Gehring, K.6
  • 26
    • 0033546405 scopus 로고    scopus 로고
    • The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3′-Poly(A) tail of mRNA. Direct association of eRF3/GSPT with polyadenylate-binding protein
    • Si Hoshino, Imai M, Kobayashi T, Uchida N, Katada T (1999) The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3′-Poly(A) tail of mRNA. Direct association of eRF3/GSPT with polyadenylate-binding protein. J Biol Chem 274:16677-16680. doi: 10.1074/jbc.274.24.16677
    • (1999) J Biol Chem , vol.274 , pp. 16677-16680
    • Si, H.1    Imai, M.2    Kobayashi, T.3    Uchida, N.4    Katada, T.5
  • 27
    • 0037184899 scopus 로고    scopus 로고
    • A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent translation
    • 1:CAS:528:DC%2BD38Xps12nsr8%3D 12381739
    • Uchida N, Hoshino S, Imataka H, Sonenberg N, Katada T (2002) A novel role of the mammalian GSPT/eRF3 associating with poly(A)-binding protein in Cap/Poly(A)-dependent translation. J Biol Chem 277:50286-50292. doi: 10.1074/jbc.M203029200
    • (2002) J Biol Chem , vol.277 , pp. 50286-50292
    • Uchida, N.1    Hoshino, S.2    Imataka, H.3    Sonenberg, N.4    Katada, T.5
  • 28
    • 77956319461 scopus 로고    scopus 로고
    • Molecular basis of eRF3 recognition by the MLLE domain of poly(A)-binding protein
    • Kozlov G, Gehring K (2010) Molecular basis of eRF3 recognition by the MLLE domain of poly(A)-binding protein. PLoS One 5:e10169. doi: 10.1371/journal.pone.0010169
    • (2010) PLoS One , vol.5 , pp. e10169
    • Kozlov, G.1    Gehring, K.2
  • 29
    • 12644303224 scopus 로고    scopus 로고
    • Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G
    • 452544 1:CAS:528:DyaK2sXosFyiuw%3D%3D 9003792
    • Tarun SZ Jr, Sachs AB (1996) Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4G. EMBO J 15:7168-7177
    • (1996) EMBO J , vol.15 , pp. 7168-7177
    • Tarun, S.Z.1    Sachs, A.B.2
  • 30
    • 84869085954 scopus 로고    scopus 로고
    • Interdomain allostery promotes assembly of the poly(A) mRNA complex with PABP and eIF4G
    • 1:CAS:528:DC%2BC38XhsVKqs7bI 23041282
    • Safaee N, Kozlov G, Noronha AM, Xie J, Wilds CJ, Gehring K (2012) Interdomain allostery promotes assembly of the poly(A) mRNA complex with PABP and eIF4G. Mol Cell 48:375-386. doi: 10.1016/j.molcel.2012.09.001
    • (2012) Mol Cell , vol.48 , pp. 375-386
    • Safaee, N.1    Kozlov, G.2    Noronha, A.M.3    Xie, J.4    Wilds, C.J.5    Gehring, K.6
  • 31
    • 0030728936 scopus 로고    scopus 로고
    • Cocrystal structure of the messenger RNA 5′ cap-binding protein (eIF4E) bound to 7-methyl-GDP
    • 1:CAS:528:DyaK2sXktFakt74%3D 9200613
    • Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK (1997) Cocrystal structure of the messenger RNA 5′ cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell 89:951-961
    • (1997) Cell , vol.89 , pp. 951-961
    • Marcotrigiano, J.1    Gingras, A.C.2    Sonenberg, N.3    Burley, S.K.4
  • 32
    • 46249091565 scopus 로고    scopus 로고
    • Translation factors promote the formation of two states of the closed-loop mRNP
    • 1:CAS:528:DC%2BD1cXnslGksL4%3D 18496529
    • Amrani N, Ghosh S, Mangus DA, Jacobson A (2008) Translation factors promote the formation of two states of the closed-loop mRNP. Nature 453:1276-1280. doi: 10.1038/nature06974
    • (2008) Nature , vol.453 , pp. 1276-1280
    • Amrani, N.1    Ghosh, S.2    Mangus, D.A.3    Jacobson, A.4
  • 33
    • 11844281461 scopus 로고    scopus 로고
    • Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms
    • 1:CAS:528:DC%2BD2MXktVartg%3D%3D 15630022
    • Kahvejian A, Svitkin YV, Sukarieh R, M'Boutchou MN, Sonenberg N (2005) Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms. Genes Dev 19:104-113. doi: 10.1101/gad.1262905
    • (2005) Genes Dev , vol.19 , pp. 104-113
    • Kahvejian, A.1    Svitkin, Y.V.2    Sukarieh, R.3    M'Boutchou, M.N.4    Sonenberg, N.5
  • 34
    • 0032112017 scopus 로고    scopus 로고
    • Circularization of mRNA by eukaryotic translation initiation factors
    • 1:CAS:528:DyaK1cXltVCjtLo%3D 9702200
    • Wells SE, Hillner PE, Vale RD, Sachs AB (1998) Circularization of mRNA by eukaryotic translation initiation factors. Mol Cell 2:135-140
    • (1998) Mol Cell , vol.2 , pp. 135-140
    • Wells, S.E.1    Hillner, P.E.2    Vale, R.D.3    Sachs, A.B.4
  • 35
    • 0032104190 scopus 로고    scopus 로고
    • A rule for termination-codon position within intron-containing genes: When nonsense affects RNA abundance
    • 1:CAS:528:DyaK1cXktVSlsLo%3D 9644970
    • Nagy E, Maquat LE (1998) A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance. Trends Biochem Sci 23:198-199. doi: 10.1016/S0968-0004(98)01208-0
    • (1998) Trends Biochem Sci , vol.23 , pp. 198-199
    • Nagy, E.1    Maquat, L.E.2
  • 36
    • 0032526946 scopus 로고    scopus 로고
    • Binary specification of nonsense codons by splicing and cytoplasmic translation
    • 1:CAS:528:DyaK1cXksFCltb0%3D 9628884
    • Thermann R, Neu-Yilik G, Deters A, Frede U, Wehr K, Hagemeier C, Hentze MW, Kulozik AE (1998) Binary specification of nonsense codons by splicing and cytoplasmic translation. EMBO J 17:3484-3494. doi: 10.1093/emboj/17.12.3484
    • (1998) EMBO J , vol.17 , pp. 3484-3494
    • Thermann, R.1    Neu-Yilik, G.2    Deters, A.3    Frede, U.4    Wehr, K.5    Hagemeier, C.6    Hentze, M.W.7    Kulozik, A.E.8
  • 37
    • 0031840487 scopus 로고    scopus 로고
    • At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: A possible link between nuclear splicing and cytoplasmic translation
    • 109113 1:CAS:528:DyaK1cXls1SgtLc%3D 9710612
    • Zhang J, Sun X, Qian Y, LaDuca JP (1998) At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation. Mol Cell Biol 18:5272-5283
    • (1998) Mol Cell Biol , vol.18 , pp. 5272-5283
    • Zhang, J.1    Sun, X.2    Qian, Y.3    LaDuca, J.P.4
  • 38
    • 0031870169 scopus 로고    scopus 로고
    • Intron function in the nonsense-mediated decay of beta-globin mRNA: Indications that pre-mRNA splicing in the nucleus can influence mRNA translation in the cytoplasm
    • 1:CAS:528:DyaK1cXks1ejtLc%3D 9671053
    • Zhang J, Sun XL, Qian YM, Maquat LE (1998) Intron function in the nonsense-mediated decay of beta-globin mRNA: indications that pre-mRNA splicing in the nucleus can influence mRNA translation in the cytoplasm. RNA 4:801-815. doi: 10.1017/S1355838298971849
    • (1998) RNA , vol.4 , pp. 801-815
    • Zhang, J.1    Sun, X.L.2    Qian, Y.M.3    Maquat, L.E.4
  • 39
    • 0036205348 scopus 로고    scopus 로고
    • Boundary-independent polar nonsense-mediated decay
    • 1:CAS:528:DC%2BD38XitlCmt7s%3D 11850396
    • Wang J, Gudikote JP, Olivas OR, Wilkinson MF (2002) Boundary-independent polar nonsense-mediated decay. EMBO Rep 3:274-279. doi: 10.1093/embo-reports/kvf036
    • (2002) EMBO Rep , vol.3 , pp. 274-279
    • Wang, J.1    Gudikote, J.P.2    Olivas, O.R.3    Wilkinson, M.F.4
  • 40
    • 0036472015 scopus 로고    scopus 로고
    • The human intronless melanocortin 4-receptor gene is NMD insensitive
    • 1:CAS:528:DC%2BD38XhvVejs7k%3D 11823452
    • Brocke KS, Neu-Yilik G, Gehring NH, Hentze MW, Kulozik AE (2002) The human intronless melanocortin 4-receptor gene is NMD insensitive. Hum Mol Genet 11:331-335. doi: 10.1093/hmg/11.3.331
    • (2002) Hum Mol Genet , vol.11 , pp. 331-335
    • Brocke, K.S.1    Neu-Yilik, G.2    Gehring, N.H.3    Hentze, M.W.4    Kulozik, A.E.5
  • 41
    • 0035028094 scopus 로고    scopus 로고
    • Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay
    • 1:CAS:528:DC%2BD3MXisFOjsbY%3D 11333024
    • Maquat LE, Li XJ (2001) Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay. RNA 7:445-456. doi: 10.1017/S1355838201002229
    • (2001) RNA , vol.7 , pp. 445-456
    • Maquat, L.E.1    Li, X.J.2
  • 42
    • 0035254681 scopus 로고    scopus 로고
    • Splicing and 3′ end formation in the definition of nonsense-mediated decay-competent human beta-globin mRNPs
    • 1:CAS:528:DC%2BD3MXitFGqt7g%3D 11157759
    • Neu-Yilik G, Gehring NH, Thermann R, Frede U, Hentze MW, Kulozik AE (2001) Splicing and 3′ end formation in the definition of nonsense-mediated decay-competent human beta-globin mRNPs. EMBO J 20:532-540. doi: 10.1093/emboj/20.3.532
    • (2001) EMBO J , vol.20 , pp. 532-540
    • Neu-Yilik, G.1    Gehring, N.H.2    Thermann, R.3    Frede, U.4    Hentze, M.W.5    Kulozik, A.E.6
  • 43
    • 0037046798 scopus 로고    scopus 로고
    • Translation is required to remove Y14 from mRNAs in the cytoplasm
    • 1:CAS:528:DC%2BD38XlsVyjsL0%3D 12121612
    • Dostie J, Dreyfuss G (2002) Translation is required to remove Y14 from mRNAs in the cytoplasm. Curr Biol 12:1060-1067
    • (2002) Curr Biol , vol.12 , pp. 1060-1067
    • Dostie, J.1    Dreyfuss, G.2
  • 44
    • 0036645697 scopus 로고    scopus 로고
    • The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: Dynamics of mRNP remodeling
    • 1:CAS:528:DC%2BD38XlsFCgurw%3D 12093754
    • Lejeune F, Ishigaki Y, Li X, Maquat LE (2002) The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: dynamics of mRNP remodeling. EMBO J 21:3536-3545. doi: 10.1093/emboj/cdf345
    • (2002) EMBO J , vol.21 , pp. 3536-3545
    • Lejeune, F.1    Ishigaki, Y.2    Li, X.3    Maquat, L.E.4
  • 45
    • 0034672093 scopus 로고    scopus 로고
    • The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
    • Le Hir H, Izaurralde E, Maquat LE, Moore MJ (2000) The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J 19:6860-6869. doi: 10.1093/emboj/19.24.6860
    • (2000) EMBO J , vol.19 , pp. 6860-6869
    • Le Hir, H.1    Izaurralde, E.2    Maquat, L.E.3    Moore, M.J.4
  • 46
    • 84866916889 scopus 로고    scopus 로고
    • CWC22 connects pre-mRNA splicing and exon junction complex assembly
    • 1:CAS:528:DC%2BC38XhsFSmsL%2FJ 22959432
    • Steckelberg A-LL, Boehm V, Gromadzka AM, Gehring NH (2012) CWC22 connects pre-mRNA splicing and exon junction complex assembly. Cell Rep 2:454-461. doi: 10.1016/j.celrep.2012.08.017
    • (2012) Cell Rep , vol.2 , pp. 454-461
    • Steckelberg, A.-L.L.1    Boehm, V.2    Gromadzka, A.M.3    Gehring, N.H.4
  • 47
    • 65249119729 scopus 로고    scopus 로고
    • Disassembly of exon junction complexes by PYM
    • 1:CAS:528:DC%2BD1MXlvFams7c%3D 19410547
    • Gehring NH, Lamprinaki S, Kulozik AE, Hentze MW (2009) Disassembly of exon junction complexes by PYM. Cell 137:536-548. doi: 10.1016/j.cell.2009.02.042
    • (2009) Cell , vol.137 , pp. 536-548
    • Gehring, N.H.1    Lamprinaki, S.2    Kulozik, A.E.3    Hentze, M.W.4
  • 48
    • 27144445082 scopus 로고    scopus 로고
    • The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity
    • 1:CAS:528:DC%2BD2MXhtVKnsrjK 16170325
    • Ballut L, Marchadier B, Baguet A, Tomasetto C, Seraphin B, Le Hir H (2005) The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity. Nat Struct Mol Biol 12:861-869. doi: 10.1038/nsmb990
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 861-869
    • Ballut, L.1    Marchadier, B.2    Baguet, A.3    Tomasetto, C.4    Seraphin, B.5    Le Hir, H.6
  • 49
    • 33747182255 scopus 로고    scopus 로고
    • The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
    • 1:CAS:528:DC%2BD28Xpt1aktbc%3D 16923391
    • Bono F, Ebert J, Lorentzen E, Conti E (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell 126:713-725. doi: 10.1016/j.cell.2006.08.006
    • (2006) Cell , vol.126 , pp. 713-725
    • Bono, F.1    Ebert, J.2    Lorentzen, E.3    Conti, E.4
  • 51
    • 0035823150 scopus 로고    scopus 로고
    • Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex
    • 1:CAS:528:DC%2BD3MXmvVSksL0%3D 11546873
    • Kim VN, Kataoka N, Dreyfuss G (2001) Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex. Science 293:1832-1836. doi: 10.1126/science.1062829
    • (2001) Science , vol.293 , pp. 1832-1836
    • Kim, V.N.1    Kataoka, N.2    Dreyfuss, G.3
  • 52
    • 0035801373 scopus 로고    scopus 로고
    • The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
    • Le Hir H, Gatfield D, Izaurralde E, Moore MJ (2001) The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J 20:4987-4997. doi: 10.1093/emboj/20.17.4987
    • (2001) EMBO J , vol.20 , pp. 4987-4997
    • Le Hir, H.1    Gatfield, D.2    Izaurralde, E.3    Moore, M.J.4
  • 53
    • 0038814325 scopus 로고    scopus 로고
    • Y14 and hUpf3b form an NMD-activating complex
    • 1:CAS:528:DC%2BD3sXjslGhsbw%3D 12718880
    • Gehring NH, Neu-Yilik G, Schell T, Hentze MW, Kulozik AE (2003) Y14 and hUpf3b form an NMD-activating complex. Mol Cell 11:939-949. doi: 10.1016/S1097-2765(03)00142-4
    • (2003) Mol Cell , vol.11 , pp. 939-949
    • Gehring, N.H.1    Neu-Yilik, G.2    Schell, T.3    Hentze, M.W.4    Kulozik, A.E.5
  • 54
    • 33744994837 scopus 로고    scopus 로고
    • EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3′ UTR length
    • Buhler M, Steiner S, Mohn F, Paillusson A, Muhlemann O (2006) EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3′ UTR length. Nat Struct Mol Biol 13:462-464. doi: 10.1038/nsmb1081
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 462-464
    • Buhler, M.1    Steiner, S.2    Mohn, F.3    Paillusson, A.4    Muhlemann, O.5
  • 55
    • 84919843479 scopus 로고    scopus 로고
    • 3′ UTR length and messenger ribonucleoprotein composition determine endocleavage efficiencies at termination codons
    • 1:CAS:528:DC%2BC2cXhslels7rK 25310981
    • Boehm V, Haberman N, Ottens F, Ule J, Gehring NH (2014) 3′ UTR length and messenger ribonucleoprotein composition determine endocleavage efficiencies at termination codons. Cell Rep 9:555-568. doi: 10.1016/j.celrep.2014.09.012
    • (2014) Cell Rep , vol.9 , pp. 555-568
    • Boehm, V.1    Haberman, N.2    Ottens, F.3    Ule, J.4    Gehring, N.H.5
  • 56
    • 84928042455 scopus 로고    scopus 로고
    • Identification of elements in human long 3′ UTRs that inhibit nonsense-mediated decay
    • 1:CAS:528:DC%2BC2MXosV2qt7c%3D 25805855
    • Toma KG, Rebbapragada I, Durand S, Lykke-Andersen J (2015) Identification of elements in human long 3′ UTRs that inhibit nonsense-mediated decay. RNA 21:887-897. doi: 10.1261/rna.048637.114
    • (2015) RNA , vol.21 , pp. 887-897
    • Toma, K.G.1    Rebbapragada, I.2    Durand, S.3    Lykke-Andersen, J.4
  • 57
    • 84885069820 scopus 로고    scopus 로고
    • Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay
    • 1:CAS:528:DC%2BC3sXhs1eltrzP 23766421
    • Hurt JA, Robertson AD, Burge CB (2013) Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay. Genome Res 23:1636-1650. doi: 10.1101/gr.157354.113
    • (2013) Genome Res , vol.23 , pp. 1636-1650
    • Hurt, J.A.1    Robertson, A.D.2    Burge, C.B.3
  • 58
    • 84874504687 scopus 로고    scopus 로고
    • Rules that govern UPF1 binding to mRNA 3′ UTRs
    • 1:CAS:528:DC%2BC3sXkvFynsbo%3D 23404710
    • Kurosaki T, Maquat LE (2013) Rules that govern UPF1 binding to mRNA 3′ UTRs. Proc Natl Acad Sci USA 110:3357-3362. doi: 10.1073/pnas.1219908110
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 3357-3362
    • Kurosaki, T.1    Maquat, L.E.2
  • 59
    • 84881477715 scopus 로고    scopus 로고
    • Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs
    • Zund D, Gruber AR, Zavolan M, Muhlemann O (2013) Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs. Nat Struct Mol Biol 20:936-943. doi: 10.1038/nsmb.2635
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 936-943
    • Zund, D.1    Gruber, A.R.2    Zavolan, M.3    Muhlemann, O.4
  • 60
    • 8544253956 scopus 로고    scopus 로고
    • A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
    • 1:CAS:528:DC%2BD2cXpt1eitLs%3D 15525991
    • Amrani N, Ganesan R, Kervestin S, Mangus DA, Ghosh S, Jacobson A (2004) A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. Nature 432:112-118. doi: 10.1038/nature03060
    • (2004) Nature , vol.432 , pp. 112-118
    • Amrani, N.1    Ganesan, R.2    Kervestin, S.3    Mangus, D.A.4    Ghosh, S.5    Jacobson, A.6
  • 61
    • 0032880399 scopus 로고    scopus 로고
    • Aberrant mRNAs with extended 3′ UTRs are substrates for rapid degradation by mRNA surveillance
    • 1369852 1:CAS:528:DyaK1MXmslCktr4%3D 10573121
    • Muhlrad D, Parker R (1999) Aberrant mRNAs with extended 3′ UTRs are substrates for rapid degradation by mRNA surveillance. RNA 5:1299-1307
    • (1999) RNA , vol.5 , pp. 1299-1307
    • Muhlrad, D.1    Parker, R.2
  • 62
    • 0035823036 scopus 로고    scopus 로고
    • Evidence for a pioneer round of mRNA translation: MRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20
    • 1:CAS:528:DC%2BD3MXmvF2murc%3D 11551508
    • Ishigaki Y, Li X, Serin G, Maquat LE (2001) Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20. Cell 106:607-617
    • (2001) Cell , vol.106 , pp. 607-617
    • Ishigaki, Y.1    Li, X.2    Serin, G.3    Maquat, L.E.4
  • 63
    • 84878945009 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells
    • 1:CAS:528:DC%2BC3sXnsVynsrk%3D 23665580
    • Durand S, Lykke-Andersen J (2013) Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells. Nat Struct Mol Biol 20:702-709. doi: 10.1038/nsmb.2575
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 702-709
    • Durand, S.1    Lykke-Andersen, J.2
  • 64
    • 84878916831 scopus 로고    scopus 로고
    • EIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells
    • 1:CAS:528:DC%2BC3sXnsVygtr8%3D 23665581
    • Rufener SC, Muhlemann O (2013) eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Nat Struct Mol Biol 20:710-717. doi: 10.1038/nsmb.2576
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 710-717
    • Rufener, S.C.1    Muhlemann, O.2
  • 65
    • 0027388887 scopus 로고
    • Evidence to implicate translation by ribosomes in the mechanism by which nonsense codons reduce the nuclear level of human triosephosphate isomerase mRNA
    • 45687 1:CAS:528:DyaK3sXpvVOgtw%3D%3D 8421679
    • Belgrader P, Cheng J, Maquat LE (1993) Evidence to implicate translation by ribosomes in the mechanism by which nonsense codons reduce the nuclear level of human triosephosphate isomerase mRNA. Proc Natl Acad Sci USA 90:482-486
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 482-486
    • Belgrader, P.1    Cheng, J.2    Maquat, L.E.3
  • 66
    • 0028884942 scopus 로고
    • A regulatory mechanism that detects premature nonsense codons in T-cell receptor transcripts in-vivo is reversed by protein-synthesis inhibitors in-vitro
    • 1:CAS:528:DyaK2MXpslOjurk%3D 7499432
    • Carter MS, Doskow J, Morris P, Li SL, Nhim RP, Sandstedt S, Wilkinson MF (1995) A regulatory mechanism that detects premature nonsense codons in T-cell receptor transcripts in-vivo is reversed by protein-synthesis inhibitors in-vitro. J Biol Chem 270:28995-29003
    • (1995) J Biol Chem , vol.270 , pp. 28995-29003
    • Carter, M.S.1    Doskow, J.2    Morris, P.3    Li, S.L.4    Nhim, R.P.5    Sandstedt, S.6    Wilkinson, M.F.7
  • 67
    • 0032530480 scopus 로고    scopus 로고
    • Proteolysis of human eukaryotic translation initiation factor eIF4GII, but not eIF4GI, coincides with the shutoff of host protein synthesis after poliovirus infection
    • 21600 1:CAS:528:DyaK1cXmt1Wqu78%3D 9736694
    • Gradi A, Svitkin YV, Imataka H, Sonenberg N (1998) Proteolysis of human eukaryotic translation initiation factor eIF4GII, but not eIF4GI, coincides with the shutoff of host protein synthesis after poliovirus infection. Proc Natl Acad Sci USA 95:11089-11094
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11089-11094
    • Gradi, A.1    Svitkin, Y.V.2    Imataka, H.3    Sonenberg, N.4
  • 68
    • 0036171240 scopus 로고    scopus 로고
    • Efficient cleavage of ribosome-associated poly(A)-binding protein by enterovirus 3C protease
    • 135927 1:CAS:528:DC%2BD38Xht1KqtL4%3D 11836384
    • Kuyumcu-Martinez NM, Joachims M, Lloyd RE (2002) Efficient cleavage of ribosome-associated poly(A)-binding protein by enterovirus 3C protease. J Virol 76:2062-2074
    • (2002) J Virol , vol.76 , pp. 2062-2074
    • Kuyumcu-Martinez, N.M.1    Joachims, M.2    Lloyd, R.E.3
  • 69
    • 0031046735 scopus 로고    scopus 로고
    • Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells
    • 1:CAS:528:DyaK2sXhs1Kgur4%3D 9049311
    • Zhang J, Maquat LE (1997) Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells. EMBO J 16:826-833. doi: 10.1093/emboj/16.4.826
    • (1997) EMBO J , vol.16 , pp. 826-833
    • Zhang, J.1    Maquat, L.E.2
  • 70
    • 79955004808 scopus 로고    scopus 로고
    • Mechanism of escape from nonsense-mediated mRNA decay of human beta-globin transcripts with nonsense mutations in the first exon
    • 3078734 1:CAS:528:DC%2BC3MXls1Ojt74%3D 21389146
    • Neu-Yilik G, Amthor B, Gehring NH, Bahri S, Paidassi H, Hentze MW, Kulozik AE (2011) Mechanism of escape from nonsense-mediated mRNA decay of human beta-globin transcripts with nonsense mutations in the first exon. RNA 17:843-854. doi: 10.1261/rna.2401811
    • (2011) RNA , vol.17 , pp. 843-854
    • Neu-Yilik, G.1    Amthor, B.2    Gehring, N.H.3    Bahri, S.4    Paidassi, H.5    Hentze, M.W.6    Kulozik, A.E.7
  • 71
    • 0024121631 scopus 로고
    • Nonsense mutations in the human beta-globin gene affect mRNA metabolism
    • 279927 1:CAS:528:DyaL1cXhvF2gsr0%3D 3353367
    • Baserga SJ, Benz EJ Jr (1988) Nonsense mutations in the human beta-globin gene affect mRNA metabolism. Proc Natl Acad Sci USA 85:2056-2060
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2056-2060
    • Baserga, S.J.1    Benz, E.J.2
  • 72
    • 0019842153 scopus 로고
    • Two cloned beta thalassemia genes are associated with amber mutations at codon 39
    • 327662 1:CAS:528:DyaL38XhtFKkurc%3D 6278453
    • Pergolizzi R, Spritz RA, Spence S, Goossens M, Kan YW, Bank A (1981) Two cloned beta thalassemia genes are associated with amber mutations at codon 39. Nucleic Acids Res 9:7065-7072
    • (1981) Nucleic Acids Res , vol.9 , pp. 7065-7072
    • Pergolizzi, R.1    Spritz, R.A.2    Spence, S.3    Goossens, M.4    Kan, Y.W.5    Bank, A.6
  • 73
    • 84856875524 scopus 로고    scopus 로고
    • Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations
    • 3273812 1:CAS:528:DC%2BC38Xit1Ontrg%3D 21989405
    • Peixeiro I, Inacio A, Barbosa C, Silva AL, Liebhaber SA, Romao L (2012) Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations. Nucleic Acids Res 40:1160-1173. doi: 10.1093/nar/gkr820
    • (2012) Nucleic Acids Res , vol.40 , pp. 1160-1173
    • Peixeiro, I.1    Inacio, A.2    Barbosa, C.3    Silva, A.L.4    Liebhaber, S.A.5    Romao, L.6
  • 74
    • 32044435368 scopus 로고    scopus 로고
    • Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
    • 1361706 1:CAS:528:DC%2BD28XhsFensL4%3D 16452507
    • Kashima I, Yamashita A, Izumi N, Kataoka N, Morishita R, Hoshino S, Ohno M, Dreyfuss G, Ohno S (2006) Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev 20:355-367. doi: 10.1101/gad.1389006
    • (2006) Genes Dev , vol.20 , pp. 355-367
    • Kashima, I.1    Yamashita, A.2    Izumi, N.3    Kataoka, N.4    Morishita, R.5    Hoshino, S.6    Ohno, M.7    Dreyfuss, G.8    Ohno, S.9
  • 75
    • 81755172088 scopus 로고    scopus 로고
    • Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
    • 3222124 1:CAS:528:DC%2BC3MXhsFyqt7jF 22028362
    • Yepiskoposyan H, Aeschimann F, Nilsson D, Okoniewski M, Muhlemann O (2011) Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA 17:2108-2118. doi: 10.1261/rna.030247.111
    • (2011) RNA , vol.17 , pp. 2108-2118
    • Yepiskoposyan, H.1    Aeschimann, F.2    Nilsson, D.3    Okoniewski, M.4    Muhlemann, O.5
  • 76
    • 43249093760 scopus 로고    scopus 로고
    • Posttranscriptional gene regulation by spatial rearrangement of the 3′ untranslated region
    • 2689704 18447580
    • Eberle AB, Stalder L, Mathys H, Orozco RZ, Muhlemann O (2008) Posttranscriptional gene regulation by spatial rearrangement of the 3′ untranslated region. PLoS Biol 6:e92. doi: 10.1371/journal.pbio.0060092
    • (2008) PLoS Biol , vol.6 , pp. e92
    • Eberle, A.B.1    Stalder, L.2    Mathys, H.3    Orozco, R.Z.4    Muhlemann, O.5
  • 77
    • 0024390412 scopus 로고
    • Identification of a selenocysteyl-tRNA(Ser) in mammalian cells that recognizes the nonsense codon, UGA
    • 1:CAS:528:DyaL1MXktlOjs7w%3D 2498338
    • Lee BJ, Worland PJ, Davis JN, Stadtman TC, Hatfield DL (1989) Identification of a selenocysteyl-tRNA(Ser) in mammalian cells that recognizes the nonsense codon, UGA. J Biol Chem 264:9724-9727
    • (1989) J Biol Chem , vol.264 , pp. 9724-9727
    • Lee, B.J.1    Worland, P.J.2    Davis, J.N.3    Stadtman, T.C.4    Hatfield, D.L.5
  • 78
    • 0027282772 scopus 로고
    • Functional characterization of the eukaryotic SECIS elements which direct selenocysteine insertion at UGA codons
    • 413599 1:CAS:528:DyaK3sXlslyisr0%3D 8344267
    • Berry MJ, Banu L, Harney JW, Larsen PR (1993) Functional characterization of the eukaryotic SECIS elements which direct selenocysteine insertion at UGA codons. EMBO J 12:3315-3322
    • (1993) EMBO J , vol.12 , pp. 3315-3322
    • Berry, M.J.1    Banu, L.2    Harney, J.W.3    Larsen, P.R.4
  • 79
    • 0028820877 scopus 로고
    • Tissue-specific regulation of selenoenzyme gene expression during selenium deficiency in rats
    • 1136017 1:CAS:528:DyaK2MXovVensL0%3D 7487877
    • Bermano G, Nicol F, Dyer JA, Sunde RA, Beckett GJ, Arthur JR, Hesketh JE (1995) Tissue-specific regulation of selenoenzyme gene expression during selenium deficiency in rats. Biochem J 311(Pt 2):425-430
    • (1995) Biochem J , vol.311 , pp. 425-430
    • Bermano, G.1    Nicol, F.2    Dyer, J.A.3    Sunde, R.A.4    Beckett, G.J.5    Arthur, J.R.6    Hesketh, J.E.7
  • 80
    • 0034748584 scopus 로고    scopus 로고
    • Selenium regulation of thioredoxin reductase activity and mRNA levels in rat liver
    • 1:CAS:528:DC%2BD3MXotFSqt7o%3D 12031252
    • Hadley KB, Sunde RA (2001) Selenium regulation of thioredoxin reductase activity and mRNA levels in rat liver. J Nutr Biochem 12:693-702
    • (2001) J Nutr Biochem , vol.12 , pp. 693-702
    • Hadley, K.B.1    Sunde, R.A.2
  • 81
    • 84904506286 scopus 로고    scopus 로고
    • Nonsense-mediated decay factors are involved in the regulation of selenoprotein mRNA levels during selenium deficiency
    • 4105750 1:CAS:528:DC%2BC2cXht1GgurfN 24947499
    • Seyedali A, Berry MJ (2014) Nonsense-mediated decay factors are involved in the regulation of selenoprotein mRNA levels during selenium deficiency. RNA 20:1248-1256. doi: 10.1261/rna.043463.113
    • (2014) RNA , vol.20 , pp. 1248-1256
    • Seyedali, A.1    Berry, M.J.2
  • 82
    • 6944256813 scopus 로고    scopus 로고
    • Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
    • 1:CAS:528:DC%2BD2cXnvFamtLk%3D 15448691
    • Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC (2004) Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat Genet 36:1073-1078. doi: 10.1038/ng1429
    • (2004) Nat Genet , vol.36 , pp. 1073-1078
    • Mendell, J.T.1    Sharifi, N.A.2    Meyers, J.L.3    Martinez-Murillo, F.4    Dietz, H.C.5
  • 84
    • 0034716987 scopus 로고    scopus 로고
    • EST comparison indicates 38% of human mRNAs contain possible alternative splice forms
    • 1:CAS:528:DC%2BD3cXjs1Chsbo%3D 10828456
    • Brett D, Hanke J, Lehmann G, Haase S, Delbruck S, Krueger S, Reich J, Bork P (2000) EST comparison indicates 38% of human mRNAs contain possible alternative splice forms. FEBS Lett 474:83-86
    • (2000) FEBS Lett , vol.474 , pp. 83-86
    • Brett, D.1    Hanke, J.2    Lehmann, G.3    Haase, S.4    Delbruck, S.5    Krueger, S.6    Reich, J.7    Bork, P.8
  • 85
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • 140922 1:CAS:528:DC%2BD3sXktlOgtA%3D%3D 12502788
    • Lewis BP, Green RE, Brenner SE (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc Natl Acad Sci USA 100:189-192. doi: 10.1073/pnas.0136770100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 86
    • 0035794679 scopus 로고    scopus 로고
    • SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs
    • 145484 1:CAS:528:DC%2BD3MXivVCrs7s%3D 11285241
    • Sureau A, Gattoni R, Dooghe Y, Stevenin J, Soret J (2001) SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs. EMBO J 20:1785-1796. doi: 10.1093/emboj/20.7.1785
    • (2001) EMBO J , vol.20 , pp. 1785-1796
    • Sureau, A.1    Gattoni, R.2    Dooghe, Y.3    Stevenin, J.4    Soret, J.5
  • 87
    • 84873850861 scopus 로고    scopus 로고
    • The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells
    • 3559549 1:CAS:528:DC%2BC3sXis1aqsbo%3D 23383264
    • Tani H, Torimura M, Akimitsu N (2013) The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells. PLoS One 8:e55684. doi: 10.1371/journal.pone.0055684
    • (2013) PLoS One , vol.8 , pp. e55684
    • Tani, H.1    Torimura, M.2    Akimitsu, N.3
  • 88
    • 84878865619 scopus 로고    scopus 로고
    • Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs
    • 3678345 1:CAS:528:DC%2BC3sXht1OmsbfI 23698349
    • Chew GL, Pauli A, Rinn JL, Regev A, Schier AF, Valen E (2013) Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs. Development 140:2828-2834. doi: 10.1242/dev.098343
    • (2013) Development , vol.140 , pp. 2828-2834
    • Chew, G.L.1    Pauli, A.2    Rinn, J.L.3    Regev, A.4    Schier, A.F.5    Valen, E.6
  • 89
    • 0019288766 scopus 로고
    • Frameshift suppression Saccharomyces cerevisiae. II. Genetic properties of group II suppressors
    • 1214272 1:STN:280:DyaL3M7jvFKjtQ%3D%3D 7009318
    • Culbertson MR, Underbrink KM, Fink GR (1980) Frameshift suppression Saccharomyces cerevisiae. II. Genetic properties of group II suppressors. Genetics 95:833-853
    • (1980) Genetics , vol.95 , pp. 833-853
    • Culbertson, M.R.1    Underbrink, K.M.2    Fink, G.R.3
  • 90
    • 0028934876 scopus 로고
    • Identification and characterization of genes that are required for the accelerated degradation of mRNAs containing a premature translational termination codon
    • 1:CAS:528:DyaK2MXktlOkt7g%3D 7883167
    • Cui Y, Hagan KW, Zhang S, Peltz SW (1995) Identification and characterization of genes that are required for the accelerated degradation of mRNAs containing a premature translational termination codon. Genes Dev 9:423-436
    • (1995) Genes Dev , vol.9 , pp. 423-436
    • Cui, Y.1    Hagan, K.W.2    Zhang, S.3    Peltz, S.W.4
  • 91
    • 0025786141 scopus 로고
    • The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
    • 1:CAS:528:DyaK38Xlt1ygsg%3D%3D 1748286
    • Leeds P, Peltz SW, Jacobson A, Culbertson MR (1991) The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev 5:2303-2314
    • (1991) Genes Dev , vol.5 , pp. 2303-2314
    • Leeds, P.1    Peltz, S.W.2    Jacobson, A.3    Culbertson, M.R.4
  • 92
    • 0026773782 scopus 로고
    • Gene products that promote mRNA turnover in Saccharomyces cerevisiae
    • 364388 1:CAS:528:DyaK3sXisVyks7c%3D 1569946
    • Leeds P, Wood JM, Lee BS, Culbertson MR (1992) Gene products that promote mRNA turnover in Saccharomyces cerevisiae. Mol Cell Biol 12:2165-2177
    • (1992) Mol Cell Biol , vol.12 , pp. 2165-2177
    • Leeds, P.1    Wood, J.M.2    Lee, B.S.3    Culbertson, M.R.4
  • 93
    • 34249870085 scopus 로고    scopus 로고
    • mRNA quality control: An ancient machinery recognizes and degrades mRNAs with nonsense codons
    • 1:CAS:528:DC%2BD2sXmtlWitLk%3D 17531985
    • Behm-Ansmant I, Kashima I, Rehwinkel J, Sauliere J, Wittkopp N, Izaurralde E (2007) mRNA quality control: an ancient machinery recognizes and degrades mRNAs with nonsense codons. FEBS Lett 581:2845-2853. doi: 10.1016/j.febslet.2007.05.027
    • (2007) FEBS Lett , vol.581 , pp. 2845-2853
    • Behm-Ansmant, I.1    Kashima, I.2    Rehwinkel, J.3    Sauliere, J.4    Wittkopp, N.5    Izaurralde, E.6
  • 94
    • 0037382643 scopus 로고    scopus 로고
    • Looking at mRNA decay pathways through the window of molecular evolution
    • 1:CAS:528:DC%2BD3sXisV2rur4%3D 12672499
    • Culbertson MR, Leeds PF (2003) Looking at mRNA decay pathways through the window of molecular evolution. Curr Opin Genet Dev 13:207-214
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 207-214
    • Culbertson, M.R.1    Leeds, P.F.2
  • 95
    • 48349096149 scopus 로고    scopus 로고
    • Incomplete nonsense-mediated mRNA decay in Giardia lamblia
    • 1:CAS:528:DC%2BD1cXps12isr8%3D 18430426
    • Chen YH, Su LH, Sun CH (2008) Incomplete nonsense-mediated mRNA decay in Giardia lamblia. Int J Parasitol 38:1305-1317. doi: 10.1016/j.ijpara.2008.02.006
    • (2008) Int J Parasitol , vol.38 , pp. 1305-1317
    • Chen, Y.H.1    Su, L.H.2    Sun, C.H.3
  • 96
    • 33749239197 scopus 로고    scopus 로고
    • Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1
    • 1:CAS:528:DC%2BD28XhtVOjt7zP 16931876
    • Kadlec J, Guilligay D, Ravelli RB, Cusack S (2006) Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1. RNA 12:1817-1824. doi: 10.1261/rna.177606
    • (2006) RNA , vol.12 , pp. 1817-1824
    • Kadlec, J.1    Guilligay, D.2    Ravelli, R.B.3    Cusack, S.4
  • 97
    • 0032940802 scopus 로고    scopus 로고
    • Smg-7 is required for mRNA surveillance in Caenorhabditis elegans
    • 1460488 1:CAS:528:DyaK1MXhtlCgsro%3D 9927455
    • Cali BM, Kuchma SL, Latham J, Anderson P (1999) smg-7 is required for mRNA surveillance in Caenorhabditis elegans. Genetics 151:605-616
    • (1999) Genetics , vol.151 , pp. 605-616
    • Cali, B.M.1    Kuchma, S.L.2    Latham, J.3    Anderson, P.4
  • 98
    • 0024444026 scopus 로고
    • A new kind of informational suppression in the nematode Caenorhabditis elegans
    • 1203802 1:STN:280:DyaK3c%2FmtVOjsA%3D%3D 2583479
    • Hodgkin J, Papp A, Pulak R, Ambros V, Anderson P (1989) A new kind of informational suppression in the nematode Caenorhabditis elegans. Genetics 123:301-313
    • (1989) Genetics , vol.123 , pp. 301-313
    • Hodgkin, J.1    Papp, A.2    Pulak, R.3    Ambros, V.4    Anderson, P.5
  • 99
    • 0027382460 scopus 로고
    • mRNA surveillance by the Caenorhabditis elegans smg genes
    • 1:CAS:528:DyaK2cXitFCl 8104846
    • Pulak R, Anderson P (1993) mRNA surveillance by the Caenorhabditis elegans smg genes. Genes Dev 7:1885-1897
    • (1993) Genes Dev , vol.7 , pp. 1885-1897
    • Pulak, R.1    Anderson, P.2
  • 100
    • 0030745114 scopus 로고    scopus 로고
    • Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein
    • 146496 1:CAS:528:DyaK2sXhslGru7o%3D 9064659
    • Applequist SE, Selg M, Raman C, Jack HM (1997) Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein. Nucleic Acids Res 25:814-821
    • (1997) Nucleic Acids Res , vol.25 , pp. 814-821
    • Applequist, S.E.1    Selg, M.2    Raman, C.3    Jack, H.M.4
  • 101
    • 0035795577 scopus 로고    scopus 로고
    • Molecular identification of smg-4, required for mRNA surveillance in C elegans
    • 1:CAS:528:DC%2BD3MXjsFWrs7o%3D 11368911
    • Aronoff R, Baran R, Hodgkin J (2001) Molecular identification of smg-4, required for mRNA surveillance in C. elegans. Gene 268:153-164
    • (2001) Gene , vol.268 , pp. 153-164
    • Aronoff, R.1    Baran, R.2    Hodgkin, J.3
  • 102
    • 0035933889 scopus 로고    scopus 로고
    • Cloning of a novel phosphatidylinositol kinase-related kinase: Characterization of the human SMG-1 RNA surveillance protein
    • 1:CAS:528:DC%2BD3MXkvVamtrk%3D 11331269
    • Denning G, Jamieson L, Maquat LE, Thompson EA, Fields AP (2001) Cloning of a novel phosphatidylinositol kinase-related kinase: characterization of the human SMG-1 RNA surveillance protein. J Biol Chem 276:22709-22714. doi: 10.1074/jbc.C100144200
    • (2001) J Biol Chem , vol.276 , pp. 22709-22714
    • Denning, G.1    Jamieson, L.2    Maquat, L.E.3    Thompson, E.A.4    Fields, A.P.5
  • 103
    • 0034704201 scopus 로고    scopus 로고
    • Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
    • 1:CAS:528:DC%2BD3MXit1ajtA%3D%3D 11163187
    • Lykke-Andersen J, Shu MD, Steitz JA (2000) Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103:1121-1131
    • (2000) Cell , vol.103 , pp. 1121-1131
    • Lykke-Andersen, J.1    Shu, M.D.2    Steitz, J.A.3
  • 105
    • 0032771414 scopus 로고    scopus 로고
    • SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast
    • 84455 1:CAS:528:DyaK1MXlslSqurs%3D 10454541
    • Page MF, Carr B, Anders KR, Grimson A, Anderson P (1999) SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast. Mol Cell Biol 19:5943-5951
    • (1999) Mol Cell Biol , vol.19 , pp. 5943-5951
    • Page, M.F.1    Carr, B.2    Anders, K.R.3    Grimson, A.4    Anderson, P.5
  • 106
    • 0035449691 scopus 로고    scopus 로고
    • Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay
    • 312771 1:CAS:528:DC%2BD3MXmvFSrurY%3D 11544179
    • Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S (2001) Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. Genes Dev 15:2215-2228. doi: 10.1101/gad.913001
    • (2001) Genes Dev , vol.15 , pp. 2215-2228
    • Yamashita, A.1    Ohnishi, T.2    Kashima, I.3    Taya, Y.4    Ohno, S.5
  • 107
    • 84924981995 scopus 로고    scopus 로고
    • Identification and characterization of novel factors that act in the nonsense-mediated mRNA decay pathway in nematodes, flies and mammals
    • 4304730 1:CAS:528:DC%2BC2MXitlyqtL4%3D 25452588
    • Casadio A, Longman D, Hug N, Delavaine L, Vallejos Baier R, Alonso CR, Caceres JF (2015) Identification and characterization of novel factors that act in the nonsense-mediated mRNA decay pathway in nematodes, flies and mammals. EMBO Rep 16:71-78. doi: 10.15252/embr.201439183
    • (2015) EMBO Rep , vol.16 , pp. 71-78
    • Casadio, A.1    Longman, D.2    Hug, N.3    Delavaine, L.4    Vallejos Baier, R.5    Alonso, C.R.6    Caceres, J.F.7
  • 108
    • 84907399845 scopus 로고    scopus 로고
    • The RNA helicase DHX34 activates NMD by promoting a transition from the surveillance to the decay-inducing complex
    • 4534575 1:CAS:528:DC%2BC2cXhs1GmtLbK 25220460
    • Hug N, Caceres JF (2014) The RNA helicase DHX34 activates NMD by promoting a transition from the surveillance to the decay-inducing complex. Cell Rep 8:1845-1856. doi: 10.1016/j.celrep.2014.08.020
    • (2014) Cell Rep , vol.8 , pp. 1845-1856
    • Hug, N.1    Caceres, J.F.2
  • 109
    • 84860160279 scopus 로고    scopus 로고
    • Integrated regulation of PIKK-mediated stress responses by AAA+ proteins RUVBL1 and RUVBL2
    • 22540023
    • Izumi N, Yamashita A, Ohno S (2012) Integrated regulation of PIKK-mediated stress responses by AAA+ proteins RUVBL1 and RUVBL2. Nucleus 3:29-43. doi: 10.4161/nucl.18926
    • (2012) Nucleus , vol.3 , pp. 29-43
    • Izumi, N.1    Yamashita, A.2    Ohno, S.3
  • 110
    • 84884935892 scopus 로고    scopus 로고
    • DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans
    • 3783168 1:CAS:528:DC%2BC3sXhsFerurnF 23828042
    • Longman D, Hug N, Keith M, Anastasaki C, Patton EE, Grimes G, Caceres JF (2013) DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans. Nucleic Acids Res 41:8319-8331. doi: 10.1093/nar/gkt585
    • (2013) Nucleic Acids Res , vol.41 , pp. 8319-8331
    • Longman, D.1    Hug, N.2    Keith, M.3    Anastasaki, C.4    Patton, E.E.5    Grimes, G.6    Caceres, J.F.7
  • 111
    • 34247556560 scopus 로고    scopus 로고
    • Mechanistic insights and identification of two novel factors in the C elegans NMD pathway
    • 1855233 1:CAS:528:DC%2BD2sXltFCns74%3D 17437990
    • Longman D, Plasterk RH, Johnstone IL, Caceres JF (2007) Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway. Genes Dev 21:1075-1085. doi: 10.1101/gad.417707
    • (2007) Genes Dev , vol.21 , pp. 1075-1085
    • Longman, D.1    Plasterk, R.H.2    Johnstone, I.L.3    Caceres, J.F.4
  • 112
    • 84901240387 scopus 로고    scopus 로고
    • MOV10 Is a 5′ to 3′ RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3′ UTRs
    • 1:CAS:528:DC%2BC2cXmtVGjtb8%3D 24726324
    • Gregersen LH, Schueler M, Munschauer M, Mastrobuoni G, Chen W, Kempa S, Dieterich C, Landthaler M (2014) MOV10 Is a 5′ to 3′ RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3′ UTRs. Mol Cell 54:573-585. doi: 10.1016/j.molcel.2014.03.017
    • (2014) Mol Cell , vol.54 , pp. 573-585
    • Gregersen, L.H.1    Schueler, M.2    Munschauer, M.3    Mastrobuoni, G.4    Chen, W.5    Kempa, S.6    Dieterich, C.7    Landthaler, M.8
  • 114
    • 84863218026 scopus 로고    scopus 로고
    • Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response
    • 3384318 1:CAS:528:DC%2BC38XpsFKmsr4%3D 22379136
    • Riehs-Kearnan N, Gloggnitzer J, Dekrout B, Jonak C, Riha K (2012) Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res 40:5615-5624. doi: 10.1093/nar/gks195
    • (2012) Nucleic Acids Res , vol.40 , pp. 5615-5624
    • Riehs-Kearnan, N.1    Gloggnitzer, J.2    Dekrout, B.3    Jonak, C.4    Riha, K.5
  • 115
    • 0035862813 scopus 로고    scopus 로고
    • Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability
    • 1:CAS:528:DC%2BD3MXns1KjsQ%3D%3D 11152657
    • Medghalchi SM, Frischmeyer PA, Mendell JT, Kelly AG, Lawler AM, Dietz HC (2001) Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability. Hum Mol Genet 10:99-105
    • (2001) Hum Mol Genet , vol.10 , pp. 99-105
    • Medghalchi, S.M.1    Frischmeyer, P.A.2    Mendell, J.T.3    Kelly, A.G.4    Lawler, A.M.5    Dietz, H.C.6
  • 116
    • 67650096774 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival
    • 2698750 1:CAS:528:DC%2BD1MXotlCqtLY%3D 19414594
    • Wittkopp N, Huntzinger E, Weiler C, Sauliere J, Schmidt S, Sonawane M, Izaurralde E (2009) Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival. Mol Cell Biol 29:3517-3528. doi: 10.1128/MCB.00177-09
    • (2009) Mol Cell Biol , vol.29 , pp. 3517-3528
    • Wittkopp, N.1    Huntzinger, E.2    Weiler, C.3    Sauliere, J.4    Schmidt, S.5    Sonawane, M.6    Izaurralde, E.7
  • 117
    • 79952651144 scopus 로고    scopus 로고
    • Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner
    • 3062174 1:CAS:528:DC%2BC3MXkslSgu78%3D 21317294
    • Avery P, Vicente-Crespo M, Francis D, Nashchekina O, Alonso CR, Palacios IM (2011) Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner. RNA 17:624-638. doi: 10.1261/rna.2404211
    • (2011) RNA , vol.17 , pp. 624-638
    • Avery, P.1    Vicente-Crespo, M.2    Francis, D.3    Nashchekina, O.4    Alonso, C.R.5    Palacios, I.M.6
  • 118
    • 0033835231 scopus 로고    scopus 로고
    • Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay
    • 1369996 1:CAS:528:DC%2BD3cXms1Cis7Y%3D 10999600
    • Bhattacharya A, Czaplinski K, Trifillis P, He F, Jacobson A, Peltz SW (2000) Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay. RNA 6:1226-1235
    • (2000) RNA , vol.6 , pp. 1226-1235
    • Bhattacharya, A.1    Czaplinski, K.2    Trifillis, P.3    He, F.4    Jacobson, A.5    Peltz, S.W.6
  • 119
    • 33846186825 scopus 로고    scopus 로고
    • Structural and functional insights into the human Upf1 helicase core
    • 1782376 1:CAS:528:DC%2BD2sXivFOksQ%3D%3D 17159905
    • Cheng Z, Muhlrad D, Lim MK, Parker R, Song H (2007) Structural and functional insights into the human Upf1 helicase core. EMBO J 26:253-264. doi: 10.1038/sj.emboj.7601464
    • (2007) EMBO J , vol.26 , pp. 253-264
    • Cheng, Z.1    Muhlrad, D.2    Lim, M.K.3    Parker, R.4    Song, H.5
  • 120
    • 77955582184 scopus 로고    scopus 로고
    • SF1 and SF2 helicases: Family matters
    • 2916977 1:CAS:528:DC%2BC3cXntVahtbY%3D 20456941
    • Fairman-Williams ME, Guenther UP, Jankowsky E (2010) SF1 and SF2 helicases: family matters. Curr Opin Struct Biol 20:313-324. doi: 10.1016/j.sbi.2010.03.011
    • (2010) Curr Opin Struct Biol , vol.20 , pp. 313-324
    • Fairman-Williams, M.E.1    Guenther, U.P.2    Jankowsky, E.3
  • 121
    • 34548638261 scopus 로고    scopus 로고
    • Structure and mechanism of helicases and nucleic acid translocases
    • 1:CAS:528:DC%2BD2sXhtVehtb7M 17506634
    • Singleton MR, Dillingham MS, Wigley DB (2007) Structure and mechanism of helicases and nucleic acid translocases. Annu Rev Biochem 76:23-50. doi: 10.1146/annurev.biochem.76.052305.115300
    • (2007) Annu Rev Biochem , vol.76 , pp. 23-50
    • Singleton, M.R.1    Dillingham, M.S.2    Wigley, D.B.3
  • 122
    • 37849005006 scopus 로고    scopus 로고
    • NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
    • 1:CAS:528:DC%2BD1cXisVWnsg%3D%3D 18066079
    • Chamieh H, Ballut L, Bonneau F, Le Hir H (2008) NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Nat Struct Mol Biol 15:85-93. doi: 10.1038/nsmb1330
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 85-93
    • Chamieh, H.1    Ballut, L.2    Bonneau, F.3    Le Hir, H.4
  • 123
    • 79952686670 scopus 로고    scopus 로고
    • Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
    • 1:CAS:528:DC%2BC3MXjsV2js7w%3D 21419344
    • Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, Domcke S, Le Hir H, Conti E (2011) Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Mol Cell 41:693-703. doi: 10.1016/j.molcel.2011.02.010
    • (2011) Mol Cell , vol.41 , pp. 693-703
    • Chakrabarti, S.1    Jayachandran, U.2    Bonneau, F.3    Fiorini, F.4    Basquin, C.5    Domcke, S.6    Le Hir, H.7    Conti, E.8
  • 124
    • 0029791449 scopus 로고    scopus 로고
    • Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 protein
    • 231548 1:CAS:528:DyaK28XlvFamtbo%3D 8816461
    • Weng Y, Czaplinski K, Peltz SW (1996) Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 protein. Mol Cell Biol 16:5477-5490
    • (1996) Mol Cell Biol , vol.16 , pp. 5477-5490
    • Weng, Y.1    Czaplinski, K.2    Peltz, S.W.3
  • 125
    • 0037064145 scopus 로고    scopus 로고
    • Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts
    • 1:CAS:528:DC%2BD38Xns12htb8%3D 12228722
    • Mendell JT, ap Rhys CM, Dietz HC (2002) Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts. Science 298:419-422. doi: 10.1126/science.1074428
    • (2002) Science , vol.298 , pp. 419-422
    • Mendell, J.T.1    Ap Rhys, C.M.2    Dietz, H.C.3
  • 126
    • 0029790557 scopus 로고    scopus 로고
    • Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover
    • 231549 1:CAS:528:DyaK28XlvFamtbs%3D 8816462
    • Weng Y, Czaplinski K, Peltz SW (1996) Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover. Mol Cell Biol 16:5491-5506
    • (1996) Mol Cell Biol , vol.16 , pp. 5491-5506
    • Weng, Y.1    Czaplinski, K.2    Peltz, S.W.3
  • 127
    • 78649949096 scopus 로고    scopus 로고
    • Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay
    • 3357093 1:CAS:528:DC%2BC3cXhsFGgsrbE 21145460
    • Franks TM, Singh G, Lykke-Andersen J (2010) Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay. Cell 143:938-950. doi: 10.1016/j.cell.2010.11.043
    • (2010) Cell , vol.143 , pp. 938-950
    • Franks, T.M.1    Singh, G.2    Lykke-Andersen, J.3
  • 128
    • 84864933811 scopus 로고    scopus 로고
    • Evidence that the Upf1-related molecular motor scans the 3′-UTR to ensure mRNA integrity
    • 3413143 1:CAS:528:DC%2BC38XhtF2rsLbO 22554850
    • Shigeoka T, Kato S, Kawaichi M, Ishida Y (2012) Evidence that the Upf1-related molecular motor scans the 3′-UTR to ensure mRNA integrity. Nucleic Acids Res 40:6887-6897. doi: 10.1093/nar/gks344
    • (2012) Nucleic Acids Res , vol.40 , pp. 6887-6897
    • Shigeoka, T.1    Kato, S.2    Kawaichi, M.3    Ishida, Y.4
  • 129
    • 84876362947 scopus 로고    scopus 로고
    • Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains
    • 3575847 1:CAS:528:DC%2BC3sXjtVaitb8%3D 23275559
    • Fiorini F, Boudvillain M, Le Hir H (2013) Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains. Nucleic Acids Res 41:2404-2415. doi: 10.1093/nar/gks1320
    • (2013) Nucleic Acids Res , vol.41 , pp. 2404-2415
    • Fiorini, F.1    Boudvillain, M.2    Le Hir, H.3
  • 130
    • 0034284394 scopus 로고    scopus 로고
    • Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay
    • 1:CAS:528:DC%2BD3cXmtlOns78%3D 10973054
    • Ponting CP (2000) Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay. Trends Biochem Sci 25:423-426
    • (2000) Trends Biochem Sci , vol.25 , pp. 423-426
    • Ponting, C.P.1
  • 131
    • 84895824865 scopus 로고    scopus 로고
    • Structural and functional analysis of the three MIF4G domains of nonsense-mediated decay factor UPF2
    • 3936715 1:CAS:528:DC%2BC2cXjtlOrs7Y%3D 24271394
    • Clerici M, Deniaud A, Boehm V, Gehring NH, Schaffitzel C, Cusack S (2014) Structural and functional analysis of the three MIF4G domains of nonsense-mediated decay factor UPF2. Nucleic Acids Res 42:2673-2686. doi: 10.1093/nar/gkt1197
    • (2014) Nucleic Acids Res , vol.42 , pp. 2673-2686
    • Clerici, M.1    Deniaud, A.2    Boehm, V.3    Gehring, N.H.4    Schaffitzel, C.5    Cusack, S.6
  • 132
    • 0033828440 scopus 로고    scopus 로고
    • Eukaryote-specific domains in translation initiation factors: Implications for translation regulation and evolution of the translation system
    • 310937 1:CAS:528:DC%2BD3cXmtFelsrc%3D 10958635
    • Aravind L, Koonin EV (2000) Eukaryote-specific domains in translation initiation factors: implications for translation regulation and evolution of the translation system. Genome Res 10:1172-1184
    • (2000) Genome Res , vol.10 , pp. 1172-1184
    • Aravind, L.1    Koonin, E.V.2
  • 133
    • 84871825274 scopus 로고    scopus 로고
    • Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay
    • 3535618 1:CAS:528:DC%2BC3sXoslSgtg%3D%3D 23236153
    • Alexandrov A, Colognori D, Shu MD, Steitz JA (2012) Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay. Proc Natl Acad Sci USA 109:21313-21318. doi: 10.1073/pnas.1219725110
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 21313-21318
    • Alexandrov, A.1    Colognori, D.2    Shu, M.D.3    Steitz, J.A.4
  • 134
    • 84867232894 scopus 로고    scopus 로고
    • Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly
    • 1:CAS:528:DC%2BC38Xhtlajsb3F 22961380
    • Barbosa I, Haque N, Fiorini F, Barrandon C, Tomasetto C, Blanchette M, Le Hir H (2012) Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly. Nat Struct Mol Biol 19:983-990. doi: 10.1038/nsmb.2380
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 983-990
    • Barbosa, I.1    Haque, N.2    Fiorini, F.3    Barrandon, C.4    Tomasetto, C.5    Blanchette, M.6    Le Hir, H.7
  • 135
    • 84888357821 scopus 로고    scopus 로고
    • Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain
    • 3845097 1:CAS:528:DC%2BC3sXhvFemu7zP 24218557
    • Buchwald G, Schussler S, Basquin C, Le Hir H, Conti E (2013) Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain. Proc Natl Acad Sci USA 110:E4611-E4618. doi: 10.1073/pnas.1314684110
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. E4611-E4618
    • Buchwald, G.1    Schussler, S.2    Basquin, C.3    Le Hir, H.4    Conti, E.5
  • 136
    • 84866916889 scopus 로고    scopus 로고
    • CWC22 connects pre-mRNA splicing and exon junction complex assembly
    • 1:CAS:528:DC%2BC38XhsFSmsL%2FJ 22959432
    • Steckelberg AL, Boehm V, Gromadzka AM, Gehring NH (2012) CWC22 connects pre-mRNA splicing and exon junction complex assembly. Cell Rep 2:454-461. doi: 10.1016/j.celrep.2012.08.017
    • (2012) Cell Rep , vol.2 , pp. 454-461
    • Steckelberg, A.L.1    Boehm, V.2    Gromadzka, A.M.3    Gehring, N.H.4
  • 137
    • 1842473091 scopus 로고    scopus 로고
    • The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3
    • 1:CAS:528:DC%2BD2cXisFCitLs%3D 15004547
    • Kadlec J, Izaurralde E, Cusack S (2004) The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat Struct Mol Biol 11:330-337. doi: 10.1038/nsmb741
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 330-337
    • Kadlec, J.1    Izaurralde, E.2    Cusack, S.3
  • 138
    • 0034751160 scopus 로고    scopus 로고
    • Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)
    • 88795 1:CAS:528:DC%2BD3MXovF2n 11113196
    • Serin G, Gersappe A, Black JD, Aronoff R, Maquat LE (2001) Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4). Mol Cell Biol 21:209-223. doi: 10.1128/MCB.21.1.209-223.2001
    • (2001) Mol Cell Biol , vol.21 , pp. 209-223
    • Serin, G.1    Gersappe, A.2    Black, J.D.3    Aronoff, R.4    Maquat, L.E.5
  • 142
    • 33646865949 scopus 로고    scopus 로고
    • Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation
    • 1464862 1:CAS:528:DC%2BD28XlsVGlt7g%3D 16601204
    • Kunz JB, Neu-Yilik G, Hentze MW, Kulozik AE, Gehring NH (2006) Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation. RNA 12:1015-1022. doi: 10.1261/rna.12506
    • (2006) RNA , vol.12 , pp. 1015-1022
    • Kunz, J.B.1    Neu-Yilik, G.2    Hentze, M.W.3    Kulozik, A.E.4    Gehring, N.H.5
  • 143
    • 34250626425 scopus 로고    scopus 로고
    • Meiotic sex chromosome inactivation
    • 1:CAS:528:DC%2BD2sXmvFagurw%3D 17329371
    • Turner JM (2007) Meiotic sex chromosome inactivation. Development 134:1823-1831. doi: 10.1242/dev.000018
    • (2007) Development , vol.134 , pp. 1823-1831
    • Turner, J.M.1
  • 144
    • 77953370114 scopus 로고    scopus 로고
    • Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex
    • 2890422 1:CAS:528:DC%2BC3cXnvVCjuro%3D 20479275
    • Buchwald G, Ebert J, Basquin C, Sauliere J, Jayachandran U, Bono F, Le Hir H, Conti E (2010) Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex. Proc Natl Acad Sci USA 107:10050-10055. doi: 10.1073/pnas.1000993107
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 10050-10055
    • Buchwald, G.1    Ebert, J.2    Basquin, C.3    Sauliere, J.4    Jayachandran, U.5    Bono, F.6    Le Hir, H.7    Conti, E.8
  • 145
    • 78049447110 scopus 로고    scopus 로고
    • SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay
    • 2964754 1:CAS:528:DC%2BC3cXhsVKksrnJ 20930030
    • Kashima I, Jonas S, Jayachandran U, Buchwald G, Conti E, Lupas AN, Izaurralde E (2010) SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay. Genes Dev 24:2440-2450. doi: 10.1101/gad.604610
    • (2010) Genes Dev , vol.24 , pp. 2440-2450
    • Kashima, I.1    Jonas, S.2    Jayachandran, U.3    Buchwald, G.4    Conti, E.5    Lupas, A.N.6    Izaurralde, E.7
  • 146
    • 84884692094 scopus 로고    scopus 로고
    • Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways
    • 3854533 1:CAS:528:DC%2BC3sXhsFeksrnN 23962664
    • Metze S, Herzog VA, Ruepp MD, Muhlemann O (2013) Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways. RNA 19:1432-1448. doi: 10.1261/rna.038893.113
    • (2013) RNA , vol.19 , pp. 1432-1448
    • Metze, S.1    Herzog, V.A.2    Ruepp, M.D.3    Muhlemann, O.4
  • 147
    • 0042025014 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in Drosophila: At the intersection of the yeast and mammalian pathways
    • 169044 1:CAS:528:DC%2BD3sXlsl2ksrc%3D 12881430
    • Gatfield D, Unterholzner L, Ciccarelli FD, Bork P, Izaurralde E (2003) Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways. EMBO J 22:3960-3970. doi: 10.1093/emboj/cdg371
    • (2003) EMBO J , vol.22 , pp. 3960-3970
    • Gatfield, D.1    Unterholzner, L.2    Ciccarelli, F.D.3    Bork, P.4    Izaurralde, E.5
  • 148
    • 0033034668 scopus 로고    scopus 로고
    • Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae
    • 1369754 1:CAS:528:DyaK1MXhtFGntLs%3D 10024174
    • Spingola M, Grate L, Haussler D, Ares M Jr (1999) Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae. RNA 5:221-234
    • (1999) RNA , vol.5 , pp. 221-234
    • Spingola, M.1    Grate, L.2    Haussler, D.3    Ares, M.4
  • 149
    • 77951976646 scopus 로고    scopus 로고
    • Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe
    • 2876954 1:CAS:528:DC%2BC3cXjvVGltLs%3D 20360683
    • Wen J, Brogna S (2010) Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe. EMBO J 29:1537-1551. doi: 10.1038/emboj.2010.48
    • (2010) EMBO J , vol.29 , pp. 1537-1551
    • Wen, J.1    Brogna, S.2
  • 150
    • 4344570947 scopus 로고    scopus 로고
    • SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA decay in Caenorhabditis elegans
    • 506987 1:CAS:528:DC%2BD2cXntVKhtbo%3D 15314158
    • Grimson A, O'Connor S, Newman CL, Anderson P (2004) SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA decay in Caenorhabditis elegans. Mol Cell Biol 24:7483-7490. doi: 10.1128/MCB.24.17.7483-7490.2004
    • (2004) Mol Cell Biol , vol.24 , pp. 7483-7490
    • Grimson, A.1    O'Connor, S.2    Newman, C.L.3    Anderson, P.4
  • 151
    • 84905705220 scopus 로고    scopus 로고
    • Structures of SMG1-UPFs complexes: SMG1 contributes to regulate UPF2-dependent activation of UPF1 in NMD
    • 1:CAS:528:DC%2BC2cXhtFWnsLrO 25002321
    • Melero R, Uchiyama A, Castano R, Kataoka N, Kurosawa H, Ohno S, Yamashita A, Llorca O (2014) Structures of SMG1-UPFs complexes: SMG1 contributes to regulate UPF2-dependent activation of UPF1 in NMD. Structure 22:1105-1119. doi: 10.1016/j.str.2014.05.015
    • (2014) Structure , vol.22 , pp. 1105-1119
    • Melero, R.1    Uchiyama, A.2    Castano, R.3    Kataoka, N.4    Kurosawa, H.5    Ohno, S.6    Yamashita, A.7    Llorca, O.8
  • 152
    • 78651507958 scopus 로고    scopus 로고
    • The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8
    • 3022261 1:CAS:528:DC%2BC3MXhs1SitLY%3D 21245168
    • Arias-Palomo E, Yamashita A, Fernandez IS, Nunez-Ramirez R, Bamba Y, Izumi N, Ohno S, Llorca O (2011) The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8. Genes Dev 25:153-164. doi: 10.1101/gad.606911
    • (2011) Genes Dev , vol.25 , pp. 153-164
    • Arias-Palomo, E.1    Yamashita, A.2    Fernandez, I.S.3    Nunez-Ramirez, R.4    Bamba, Y.5    Izumi, N.6    Ohno, S.7    Llorca, O.8
  • 154
    • 84906218594 scopus 로고    scopus 로고
    • Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6
    • 4132714 25013172
    • Chakrabarti S, Bonneau F, Schussler S, Eppinger E, Conti E (2014) Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6. Nucleic Acids Res 42:9447-9460. doi: 10.1093/nar/gku578
    • (2014) Nucleic Acids Res , vol.42 , pp. 9447-9460
    • Chakrabarti, S.1    Bonneau, F.2    Schussler, S.3    Eppinger, E.4    Conti, E.5
  • 156
    • 33646229126 scopus 로고    scopus 로고
    • Role for Upf2p phosphorylation in Saccharomyces cerevisiae nonsense-mediated mRNA decay
    • 1447418 1:CAS:528:DC%2BD28XksVKks7s%3D 16611983
    • Wang W, Cajigas IJ, Peltz SW, Wilkinson MF, Gonzalez CI (2006) Role for Upf2p phosphorylation in Saccharomyces cerevisiae nonsense-mediated mRNA decay. Mol Cell Biol 26:3390-3400. doi: 10.1128/MCB.26.9.3390-3400.2006
    • (2006) Mol Cell Biol , vol.26 , pp. 3390-3400
    • Wang, W.1    Cajigas, I.J.2    Peltz, S.W.3    Wilkinson, M.F.4    Gonzalez, C.I.5
  • 157
    • 13944259434 scopus 로고    scopus 로고
    • SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway
    • 1:CAS:528:DC%2BD2MXit12rtL4%3D 15721257
    • Fukuhara N, Ebert J, Unterholzner L, Lindner D, Izaurralde E, Conti E (2005) SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway. Mol Cell 17:537-547. doi: 10.1016/j.molcel.2005.01.010
    • (2005) Mol Cell , vol.17 , pp. 537-547
    • Fukuhara, N.1    Ebert, J.2    Unterholzner, L.3    Lindner, D.4    Izaurralde, E.5    Conti, E.6
  • 158
    • 33646898172 scopus 로고    scopus 로고
    • Structural determinants of 14-3-3 binding specificities and regulation of subcellular localization of 14-3-3-ligand complexes: A comparison of the X-ray crystal structures of all human 14-3-3 isoforms
    • 1:CAS:528:DC%2BD28XltlKmsrg%3D 16678437
    • Gardino AK, Smerdon SJ, Yaffe MB (2006) Structural determinants of 14-3-3 binding specificities and regulation of subcellular localization of 14-3-3-ligand complexes: a comparison of the X-ray crystal structures of all human 14-3-3 isoforms. Semin Cancer Biol 16:173-182. doi: 10.1016/j.semcancer.2006.03.007
    • (2006) Semin Cancer Biol , vol.16 , pp. 173-182
    • Gardino, A.K.1    Smerdon, S.J.2    Yaffe, M.B.3
  • 159
    • 84873026843 scopus 로고    scopus 로고
    • An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay
    • 3566313 1:CAS:528:DC%2BC3sXivVWju7Y%3D 23348841
    • Jonas S, Weichenrieder O, Izaurralde E (2013) An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay. Genes Dev 27:211-225. doi: 10.1101/gad.206672.112
    • (2013) Genes Dev , vol.27 , pp. 211-225
    • Jonas, S.1    Weichenrieder, O.2    Izaurralde, E.3
  • 160
    • 80455154960 scopus 로고    scopus 로고
    • Structural basis of 14-3-3 protein functions
    • 1:CAS:528:DC%2BC3MXhsVSkt7vL 21920446
    • Obsil T, Obsilova V (2011) Structural basis of 14-3-3 protein functions. Semin Cell Dev Biol 22:663-672. doi: 10.1016/j.semcdb.2011.09.001
    • (2011) Semin Cell Dev Biol , vol.22 , pp. 663-672
    • Obsil, T.1    Obsilova, V.2
  • 161
    • 84856858152 scopus 로고    scopus 로고
    • N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD
    • 3273798 1:CAS:528:DC%2BC38Xit1Ont70%3D 21965535
    • Okada-Katsuhata Y, Yamashita A, Kutsuzawa K, Izumi N, Hirahara F, Ohno S (2012) N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD. Nucleic Acids Res 40:1251-1266. doi: 10.1093/nar/gkr791
    • (2012) Nucleic Acids Res , vol.40 , pp. 1251-1266
    • Okada-Katsuhata, Y.1    Yamashita, A.2    Kutsuzawa, K.3    Izumi, N.4    Hirahara, F.5    Ohno, S.6
  • 162
    • 8844245615 scopus 로고    scopus 로고
    • SMG7 acts as a molecular link between mRNA surveillance and mRNA decay
    • 1:CAS:528:DC%2BD2cXhtVKht7vM 15546618
    • Unterholzner L, Izaurralde E (2004) SMG7 acts as a molecular link between mRNA surveillance and mRNA decay. Mol Cell 16:587-596. doi: 10.1016/j.molcel.2004.10.013
    • (2004) Mol Cell , vol.16 , pp. 587-596
    • Unterholzner, L.1    Izaurralde, E.2
  • 163
    • 84885356907 scopus 로고    scopus 로고
    • The SMG5-SMG7 heterodimer directly recruits the CCR4-NOT deadenylase complex to mRNAs containing nonsense codons via interaction with POP2
    • 3850096 1:CAS:528:DC%2BC3sXhs1Ohs7fO 24115769
    • Loh B, Jonas S, Izaurralde E (2013) The SMG5-SMG7 heterodimer directly recruits the CCR4-NOT deadenylase complex to mRNAs containing nonsense codons via interaction with POP2. Genes Dev 27:2125-2138. doi: 10.1101/gad.226951.113
    • (2013) Genes Dev , vol.27 , pp. 2125-2138
    • Loh, B.1    Jonas, S.2    Izaurralde, E.3
  • 164
    • 0028948708 scopus 로고
    • Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
    • 1:CAS:528:DyaK2MXktlOkt7k%3D 7883168
    • He F, Jacobson A (1995) Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen. Genes Dev 9:437-454
    • (1995) Genes Dev , vol.9 , pp. 437-454
    • He, F.1    Jacobson, A.2
  • 165
    • 0036888905 scopus 로고    scopus 로고
    • Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay
    • 134073 1:CAS:528:DC%2BD38Xos1yhs78%3D 12417715
    • Lykke-Andersen J (2002) Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay. Mol Cell Biol 22:8114-8121
    • (2002) Mol Cell Biol , vol.22 , pp. 8114-8121
    • Lykke-Andersen, J.1
  • 166
    • 0035137307 scopus 로고    scopus 로고
    • Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs
    • 86698 1:CAS:528:DC%2BD3MXhtlGhs78%3D 11238889
    • He F, Jacobson A (2001) Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs. Mol Cell Biol 21:1515-1530. doi: 10.1128/MCB.21.5.1515-1530.2001
    • (2001) Mol Cell Biol , vol.21 , pp. 1515-1530
    • He, F.1    Jacobson, A.2
  • 167
    • 0141819096 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
    • 1:CAS:528:DC%2BD3sXnvFGrt74%3D 14527413
    • Lejeune F, Li X, Maquat LE (2003) Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities. Mol Cell 12:675-687
    • (2003) Mol Cell , vol.12 , pp. 675-687
    • Lejeune, F.1    Li, X.2    Maquat, L.E.3
  • 168
    • 58149291462 scopus 로고    scopus 로고
    • Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex
    • 1:CAS:528:DC%2BD1MXhtFOit7w%3D 19150429
    • Cho H, Kim KM, Kim YK (2009) Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex. Mol Cell 33:75-86. doi: 10.1016/j.molcel.2008.11.022
    • (2009) Mol Cell , vol.33 , pp. 75-86
    • Cho, H.1    Kim, K.M.2    Kim, Y.K.3
  • 169
    • 84870553285 scopus 로고    scopus 로고
    • Structural basis of the PNRC2-mediated link between mRNA surveillance and decapping
    • 1:CAS:528:DC%2BC38XhsFCks7nN 23085078
    • Lai T, Cho H, Liu Z, Bowler MW, Piao S, Parker R, Kim YK, Song H (2012) Structural basis of the PNRC2-mediated link between mrna surveillance and decapping. Structure 20:2025-2037. doi: 10.1016/j.str.2012.09.009
    • (2012) Structure , vol.20 , pp. 2025-2037
    • Lai, T.1    Cho, H.2    Liu, Z.3    Bowler, M.W.4    Piao, S.5    Parker, R.6    Kim, Y.K.7    Song, H.8
  • 170
    • 84874720941 scopus 로고    scopus 로고
    • SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay
    • 3553988 1:CAS:528:DC%2BC3sXhtFyjtLY%3D 23234702
    • Cho H, Han S, Choe J, Park SG, Choi SS, Kim YK (2013) SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic Acids Res 41:1319-1328. doi: 10.1093/nar/gks1222
    • (2013) Nucleic Acids Res , vol.41 , pp. 1319-1328
    • Cho, H.1    Han, S.2    Choe, J.3    Park, S.G.4    Choi, S.S.5    Kim, Y.K.6
  • 171
    • 0037415691 scopus 로고    scopus 로고
    • SMG-5, required for C.elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A
    • 140740 1:CAS:528:DC%2BD3sXitlKks7Y%3D 12554664
    • Anders KR, Grimson A, Anderson P (2003) SMG-5, required for C.elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A. EMBO J 22:641-650. doi: 10.1093/emboj/cdg056
    • (2003) EMBO J , vol.22 , pp. 641-650
    • Anders, K.R.1    Grimson, A.2    Anderson, P.3
  • 172
    • 0034649546 scopus 로고    scopus 로고
    • PIN domains in nonsense-mediated mRNA decay and RNAi
    • 1:CAS:528:DC%2BD3cXovFKgtLs%3D 11137022
    • Clissold PM, Ponting CP (2000) PIN domains in nonsense-mediated mRNA decay and RNAi. Curr Biol 10:R888-R890
    • (2000) Curr Biol , vol.10 , pp. R888-R890
    • Clissold, P.M.1    Ponting, C.P.2
  • 173
    • 84857770255 scopus 로고    scopus 로고
    • Mechanisms of endonuclease-mediated mRNA decay
    • 3347869 1:CAS:528:DC%2BC3MXot1OnsLo%3D 21957046
    • Schoenberg DR (2011) Mechanisms of endonuclease-mediated mRNA decay. Wiley Interdiscip Rev RNA 2:582-600. doi: 10.1002/wrna.78
    • (2011) Wiley Interdiscip Rev RNA , vol.2 , pp. 582-600
    • Schoenberg, D.R.1
  • 174
    • 33750490399 scopus 로고    scopus 로고
    • Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex
    • 1630413 1:CAS:528:DC%2BD28XhtFChsr%2FE 17053788
    • Glavan F, Behm-Ansmant I, Izaurralde E, Conti E (2006) Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex. EMBO J 25:5117-5125. doi: 10.1038/sj.emboj.7601377
    • (2006) EMBO J , vol.25 , pp. 5117-5125
    • Glavan, F.1    Behm-Ansmant, I.2    Izaurralde, E.3    Conti, E.4
  • 175
    • 0037279012 scopus 로고    scopus 로고
    • Characterization of human Smg5/7a: A protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1
    • 1370372 1:CAS:528:DC%2BD3sXhtFahs7s%3D 12554878
    • Chiu SY, Serin G, Ohara O, Maquat LE (2003) Characterization of human Smg5/7a: a protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1. RNA 9:77-87
    • (2003) RNA , vol.9 , pp. 77-87
    • Chiu, S.Y.1    Serin, G.2    Ohara, O.3    Maquat, L.E.4
  • 176
    • 2942595765 scopus 로고    scopus 로고
    • Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila
    • 1:CAS:528:DC%2BD2cXks1Cgt7k%3D 15175755
    • Gatfield D, Izaurralde E (2004) Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila. Nature 429:575-578. doi: 10.1038/nature02559
    • (2004) Nature , vol.429 , pp. 575-578
    • Gatfield, D.1    Izaurralde, E.2
  • 177
    • 57049126216 scopus 로고    scopus 로고
    • SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
    • 2590965 1:CAS:528:DC%2BD1cXhsFWgtL7E 18974281
    • Huntzinger E, Kashima I, Fauser M, Sauliere J, Izaurralde E (2008) SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA 14:2609-2617. doi: 10.1261/rna.1386208
    • (2008) RNA , vol.14 , pp. 2609-2617
    • Huntzinger, E.1    Kashima, I.2    Fauser, M.3    Sauliere, J.4    Izaurralde, E.5
  • 178
    • 58149265041 scopus 로고    scopus 로고
    • SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells
    • 1:CAS:528:DC%2BD1cXhsVKlt7vO 19060897
    • Eberle AB, Lykke-Andersen S, Muhlemann O, Jensen TH (2009) SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells. Nat Struct Mol Biol 16:49-55. doi: 10.1038/nsmb.1530
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 49-55
    • Eberle, A.B.1    Lykke-Andersen, S.2    Muhlemann, O.3    Jensen, T.H.4
  • 179
    • 84906239869 scopus 로고    scopus 로고
    • A novel phosphorylation-independent interaction between SMG6 and UPF1 is essential for human NMD
    • 4132754 25053839
    • Nicholson P, Josi C, Kurosawa H, Yamashita A, Muhlemann O (2014) A novel phosphorylation-independent interaction between SMG6 and UPF1 is essential for human NMD. Nucleic Acids Res 42:9217-9235. doi: 10.1093/nar/gku645
    • (2014) Nucleic Acids Res , vol.42 , pp. 9217-9235
    • Nicholson, P.1    Josi, C.2    Kurosawa, H.3    Yamashita, A.4    Muhlemann, O.5
  • 180
    • 84906885914 scopus 로고    scopus 로고
    • A post-translational regulatory switch on UPF1 controls targeted mRNA degradation
    • 4197951 1:CAS:528:DC%2BC2cXhs1CgtbnN 25184677
    • Kurosaki T, Li W, Hoque M, Popp MW, Ermolenko DN, Tian B, Maquat LE (2014) A post-translational regulatory switch on UPF1 controls targeted mRNA degradation. Genes Dev 28:1900-1916. doi: 10.1101/gad.245506.114
    • (2014) Genes Dev , vol.28 , pp. 1900-1916
    • Kurosaki, T.1    Li, W.2    Hoque, M.3    Popp, M.W.4    Ermolenko, D.N.5    Tian, B.6    Maquat, L.E.7
  • 181
    • 84910640414 scopus 로고    scopus 로고
    • Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes
    • Lykke-Andersen S, Chen Y, Ardal BR, Lilje B, Waage J, Sandelin A, Jensen TH (2014) Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes. Genes Dev 28:2498-2517. doi: 10.1101/gad.246538.114
    • (2014) Genes Dev , vol.28 , pp. 2498-2517
    • Lykke-Andersen, S.1    Chen, Y.2    Ardal, B.R.3    Lilje, B.4    Waage, J.5    Sandelin, A.6    Jensen, T.H.7
  • 183
    • 79960902609 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: To die or not to die, that is the question
    • 3150509 1:CAS:528:DC%2BC3MXps1ejtrg%3D 21550797
    • Hwang J, Maquat LE (2011) Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question. Curr Opin Genet Dev 21:422-430. doi: 10.1016/j.gde.2011.03.008
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 422-430
    • Hwang, J.1    Maquat, L.E.2
  • 184
    • 44149104364 scopus 로고    scopus 로고
    • NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements
    • 2377192 1:CAS:528:DC%2BD1cXmsVWmtro%3D 18483223
    • Weischenfeldt J, Damgaard I, Bryder D, Theilgaard-Monch K, Thoren LA, Nielsen FC, Jacobsen SE, Nerlov C, Porse BT (2008) NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements. Genes Dev 22:1381-1396. doi: 10.1101/gad.468808
    • (2008) Genes Dev , vol.22 , pp. 1381-1396
    • Weischenfeldt, J.1    Damgaard, I.2    Bryder, D.3    Theilgaard-Monch, K.4    Thoren, L.A.5    Nielsen, F.C.6    Jacobsen, S.E.7    Nerlov, C.8    Porse, B.T.9
  • 188
    • 49949105213 scopus 로고    scopus 로고
    • The multiple lives of NMD factors: Balancing roles in gene and genome regulation
    • 3711694 1:CAS:528:DC%2BD1cXhtVSitrjO 18679436
    • Isken O, Maquat LE (2008) The multiple lives of NMD factors: balancing roles in gene and genome regulation. Nat Rev Genet 9:699-712. doi: 10.1038/nrg2402
    • (2008) Nat Rev Genet , vol.9 , pp. 699-712
    • Isken, O.1    Maquat, L.E.2
  • 189
    • 77949904260 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in human cells: Mechanistic insights, functions beyond quality control and the double-life of NMD factors
    • 1:CAS:528:DC%2BC3cXitFCksbg%3D 19859661
    • Nicholson P, Yepiskoposyan H, Metze S, Zamudio Orozco R, Kleinschmidt N, Muhlemann O (2010) Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell Mol Life Sci 67:677-700. doi: 10.1007/s00018-009-0177-1
    • (2010) Cell Mol Life Sci , vol.67 , pp. 677-700
    • Nicholson, P.1    Yepiskoposyan, H.2    Metze, S.3    Zamudio Orozco, R.4    Kleinschmidt, N.5    Muhlemann, O.6
  • 193
    • 84864123489 scopus 로고    scopus 로고
    • Broadening the phenotype associated with mutations in UPF3B: Two further cases with renal dysplasia and variable developmental delay
    • 22609145
    • Lynch SA, Nguyen LS, Ng LY, Waldron M, McDonald D, Gecz J (2012) Broadening the phenotype associated with mutations in UPF3B: two further cases with renal dysplasia and variable developmental delay. Eur J Med Genet 55:476-479. doi: 10.1016/j.ejmg.2012.03.010
    • (2012) Eur J Med Genet , vol.55 , pp. 476-479
    • Lynch, S.A.1    Nguyen, L.S.2    Ng, L.Y.3    Waldron, M.4    McDonald, D.5    Gecz, J.6
  • 194
    • 84876814034 scopus 로고    scopus 로고
    • Exome sequencing identifies UPF3B as the causative gene for a Chinese non-syndrome mental retardation pedigree
    • 1:CAS:528:DC%2BC3sXpt1Cns78%3D 22957832
    • Xu X, Zhang L, Tong P, Xun G, Su W, Xiong Z, Zhu T, Zheng Y, Luo S, Pan Y, Xia K, Hu Z (2013) Exome sequencing identifies UPF3B as the causative gene for a Chinese non-syndrome mental retardation pedigree. Clin Genet 83:560-564. doi: 10.1111/cge.12014
    • (2013) Clin Genet , vol.83 , pp. 560-564
    • Xu, X.1    Zhang, L.2    Tong, P.3    Xun, G.4    Su, W.5    Xiong, Z.6    Zhu, T.7    Zheng, Y.8    Luo, S.9    Pan, Y.10    Xia, K.11    Hu, Z.12
  • 196
    • 34247205419 scopus 로고    scopus 로고
    • An alternative branch of the nonsense-mediated decay pathway
    • 1847659 1:CAS:528:DC%2BD2sXjslOmtLk%3D 17363904
    • Chan WK, Huang L, Gudikote JP, Chang YF, Imam JS, MacLean JA 2nd, Wilkinson MF (2007) An alternative branch of the nonsense-mediated decay pathway. EMBO J 26:1820-1830. doi: 10.1038/sj.emboj.7601628
    • (2007) EMBO J , vol.26 , pp. 1820-1830
    • Chan, W.K.1    Huang, L.2    Gudikote, J.P.3    Chang, Y.F.4    Imam, J.S.5    MacLean, J.A.6    Wilkinson, M.F.7
  • 197
    • 84875947761 scopus 로고    scopus 로고
    • Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders
    • 1:CAS:528:DC%2BC3sXlsVCju7Y%3D 23376982
    • Nguyen LS, Kim HG, Rosenfeld JA, Shen Y, Gusella JF, Lacassie Y, Layman LC, Shaffer LG, Gecz J (2013) Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders. Hum Mol Genet 22:1816-1825. doi: 10.1093/hmg/ddt035
    • (2013) Hum Mol Genet , vol.22 , pp. 1816-1825
    • Nguyen, L.S.1    Kim, H.G.2    Rosenfeld, J.A.3    Shen, Y.4    Gusella, J.F.5    Lacassie, Y.6    Layman, L.C.7    Shaffer, L.G.8    Gecz, J.9
  • 198
    • 84881193129 scopus 로고    scopus 로고
    • Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network
    • Gulsuner S, Walsh T, Watts AC, Lee MK, Thornton AM, Casadei S, Rippey C, Shahin H, Consortium on the Genetics of S, Group PS, Nimgaonkar VL, Go RC, Savage RM, Swerdlow NR, Gur RE, Braff DL, King MC, McClellan JM 10.1016/j.cell.2013.06.049
    • Gulsuner S, Walsh T, Watts AC, Lee MK, Thornton AM, Casadei S, Rippey C, Shahin H, Consortium on the Genetics of S, Group PS, Nimgaonkar VL, Go RC, Savage RM, Swerdlow NR, Gur RE, Braff DL, King MC, McClellan JM (2013) Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network. Cell 154:518-529. doi: 10.1016/j.cell.2013.06.049
    • (2013) Cell , vol.154 , pp. 518-529
  • 202
    • 0026561021 scopus 로고
    • Short stature, Robin sequence, cleft mandible, pre/postaxial hand anomalies, and clubfoot: A new autosomal recessive syndrome
    • 1:STN:280:DyaK38zjslSguw%3D%3D 1632438
    • Richieri-Costa A, Pereira SC (1992) Short stature, Robin sequence, cleft mandible, pre/postaxial hand anomalies, and clubfoot: a new autosomal recessive syndrome. Am J Med Genet 42:681-687. doi: 10.1002/ajmg.1320420511
    • (1992) Am J Med Genet , vol.42 , pp. 681-687
    • Richieri-Costa, A.1    Pereira, S.C.2
  • 204
    • 0033082394 scopus 로고    scopus 로고
    • RNA surveillance. Unforeseen consequences for gene expression, inherited genetic disorders and cancer
    • 1:CAS:528:DyaK1MXhvVWhurY%3D 10098411
    • Culbertson MR (1999) RNA surveillance. Unforeseen consequences for gene expression, inherited genetic disorders and cancer. Trends Genet 15:74-80
    • (1999) Trends Genet , vol.15 , pp. 74-80
    • Culbertson, M.R.1
  • 205
    • 84873020912 scopus 로고    scopus 로고
    • Ataluren as an agent for therapeutic nonsense suppression
    • 3968684 1:CAS:528:DC%2BC3sXjsFKltL0%3D 23215857
    • Peltz SW, Morsy M, Welch EM, Jacobson A (2013) Ataluren as an agent for therapeutic nonsense suppression. Annu Rev Med 64:407-425. doi: 10.1146/annurev-med-120611-144851
    • (2013) Annu Rev Med , vol.64 , pp. 407-425
    • Peltz, S.W.1    Morsy, M.2    Welch, E.M.3    Jacobson, A.4
  • 206
    • 49149098054 scopus 로고    scopus 로고
    • A meta-analysis of nonsense mutations causing human genetic disease
    • 1:CAS:528:DC%2BD1cXhtVCqu7vI 18454449
    • Mort M, Ivanov D, Cooper DN, Chuzhanova NA (2008) A meta-analysis of nonsense mutations causing human genetic disease. Hum Mutat 29:1037-1047. doi: 10.1002/humu.20763
    • (2008) Hum Mutat , vol.29 , pp. 1037-1047
    • Mort, M.1    Ivanov, D.2    Cooper, D.N.3    Chuzhanova, N.A.4
  • 207
    • 77956663450 scopus 로고    scopus 로고
    • NMD: RNA biology meets human genetic medicine
    • 1:CAS:528:DC%2BC3cXhtVyrtbzI 20795950
    • Bhuvanagiri M, Schlitter AM, Hentze MW, Kulozik AE (2010) NMD: RNA biology meets human genetic medicine. Biochem J 430:365-377. doi: 10.1042/BJ20100699
    • (2010) Biochem J , vol.430 , pp. 365-377
    • Bhuvanagiri, M.1    Schlitter, A.M.2    Hentze, M.W.3    Kulozik, A.E.4
  • 208
    • 0028344092 scopus 로고
    • Nonsense codon mutations in the terminal exon of the beta-globin gene are not associated with a reduction in beta-mRNA accumulation: A mechanism for the phenotype of dominant beta-thalassemia
    • 1:CAS:528:DyaK2cXktVKnt78%3D 8161774
    • Hall GW, Thein S (1994) Nonsense codon mutations in the terminal exon of the beta-globin gene are not associated with a reduction in beta-mRNA accumulation: a mechanism for the phenotype of dominant beta-thalassemia. Blood 83:2031-2037
    • (1994) Blood , vol.83 , pp. 2031-2037
    • Hall, G.W.1    Thein, S.2
  • 209
    • 3542995089 scopus 로고    scopus 로고
    • Nonsense-mediated decay approaches the clinic
    • 1:CAS:528:DC%2BD2cXmtVOis7Y%3D 15284851
    • Holbrook JA, Neu-Yilik G, Hentze MW, Kulozik AE (2004) Nonsense-mediated decay approaches the clinic. Nat Genet 36:801-808. doi: 10.1038/ng1403
    • (2004) Nat Genet , vol.36 , pp. 801-808
    • Holbrook, J.A.1    Neu-Yilik, G.2    Hentze, M.W.3    Kulozik, A.E.4
  • 210
    • 0035168526 scopus 로고    scopus 로고
    • Long mutant dystrophins and variable phenotypes: Evasion of nonsense-mediated decay?
    • 1:STN:280:DC%2BD3MnkvFansQ%3D%3D 11702221
    • Kerr TP, Sewry CA, Robb SA, Roberts RG (2001) Long mutant dystrophins and variable phenotypes: evasion of nonsense-mediated decay? Hum Genet 109:402-407. doi: 10.1007/s004390100598
    • (2001) Hum Genet , vol.109 , pp. 402-407
    • Kerr, T.P.1    Sewry, C.A.2    Robb, S.A.3    Roberts, R.G.4
  • 211
    • 7444230353 scopus 로고    scopus 로고
    • Pharmacologic therapy for stop mutations: How much CFTR activity is enough?
    • 1:CAS:528:DC%2BD2cXhtVOgsr%2FE 15510065
    • Kerem E (2004) Pharmacologic therapy for stop mutations: how much CFTR activity is enough? Curr Opin Pulm Med 10:547-552
    • (2004) Curr Opin Pulm Med , vol.10 , pp. 547-552
    • Kerem, E.1
  • 212
    • 34547093657 scopus 로고    scopus 로고
    • Aminoglycoside antibiotics: Old drugs and new therapeutic approaches
    • 1:CAS:528:DC%2BD2sXovFagtLg%3D 17447006
    • Hermann T (2007) Aminoglycoside antibiotics: old drugs and new therapeutic approaches. Cell Mol Life Sci 64:1841-1852. doi: 10.1007/s00018-007-7034-x
    • (2007) Cell Mol Life Sci , vol.64 , pp. 1841-1852
    • Hermann, T.1
  • 214
    • 0031964838 scopus 로고    scopus 로고
    • Transient renal failure due to simultaneous ibuprofen and aminoglycoside therapy in children with cystic fibrosis
    • 1:STN:280:DyaK1c%2FmvF2lsg%3D%3D 9424574
    • Kovesi TA, Swartz R, MacDonald N (1998) Transient renal failure due to simultaneous ibuprofen and aminoglycoside therapy in children with cystic fibrosis. N Engl J Med 338:65-66. doi: 10.1056/NEJM199801013380115
    • (1998) N Engl J Med , vol.338 , pp. 65-66
    • Kovesi, T.A.1    Swartz, R.2    MacDonald, N.3
  • 216
    • 62549134976 scopus 로고    scopus 로고
    • Mechanism of PTC124 activity in cell-based luciferase assays of nonsense codon suppression
    • 2638738 1:CAS:528:DC%2BD1MXivFGqt74%3D 19208811
    • Auld DS, Thorne N, Maguire WF, Inglese J (2009) Mechanism of PTC124 activity in cell-based luciferase assays of nonsense codon suppression. Proc Natl Acad Sci USA 106:3585-3590. doi: 10.1073/pnas.0813345106
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 3585-3590
    • Auld, D.S.1    Thorne, N.2    Maguire, W.F.3    Inglese, J.4
  • 217
    • 84879391161 scopus 로고    scopus 로고
    • A lack of premature termination codon read-through efficacy of PTC124 (Ataluren) in a diverse array of reporter assays
    • 3692445 1:CAS:528:DC%2BC3sXhtFGjsLzK 23824517
    • McElroy SP, Nomura T, Torrie LS, Warbrick E, Gartner U, Wood G, McLean WH (2013) A lack of premature termination codon read-through efficacy of PTC124 (Ataluren) in a diverse array of reporter assays. PLoS Biol 11:e1001593. doi: 10.1371/journal.pbio.1001593
    • (2013) PLoS Biol , vol.11 , pp. e1001593
    • McElroy, S.P.1    Nomura, T.2    Torrie, L.S.3    Warbrick, E.4    Gartner, U.5    Wood, G.6    McLean, W.H.7
  • 218
    • 0018764020 scopus 로고
    • Beta 0 thalassemia, a nonsense mutation in man
    • 383714 1:CAS:528:DyaE1MXkslaksbc%3D 88735
    • Chang JC, Kan YW (1979) Beta 0 thalassemia, a nonsense mutation in man. Proc Natl Acad Sci USA 76:2886-2889
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 2886-2889
    • Chang, J.C.1    Kan, Y.W.2
  • 219
    • 0031896755 scopus 로고    scopus 로고
    • Selenium deficiency reduces the abundance of mRNA for Se-dependent glutathione peroxidase 1 by a UGA-dependent mechanism likely to be nonsense codon-mediated decay of cytoplasmic mRNA
    • 110672 1:CAS:528:DyaK1cXis1Gmsrk%3D 9566912
    • Moriarty PM, Reddy CC, Maquat LE (1998) Selenium deficiency reduces the abundance of mRNA for Se-dependent glutathione peroxidase 1 by a UGA-dependent mechanism likely to be nonsense codon-mediated decay of cytoplasmic mRNA. Mol Cell Biol 18:2932-2939
    • (1998) Mol Cell Biol , vol.18 , pp. 2932-2939
    • Moriarty, P.M.1    Reddy, C.C.2    Maquat, L.E.3
  • 220
    • 84941032369 scopus 로고    scopus 로고
    • Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells
    • 4288159 1:CAS:528:DC%2BC2MXhsFaisL3F 25429978
    • Schmidt SA, Foley PL, Jeong DH, Rymarquis LA, Doyle F, Tenenbaum SA, Belasco JG, Green PJ (2015) Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells. Nucleic Acids Res 43:309-323. doi: 10.1093/nar/gku1258
    • (2015) Nucleic Acids Res , vol.43 , pp. 309-323
    • Schmidt, S.A.1    Foley, P.L.2    Jeong, D.H.3    Rymarquis, L.A.4    Doyle, F.5    Tenenbaum, S.A.6    Belasco, J.G.7    Green, P.J.8
  • 221
    • 0035830918 scopus 로고    scopus 로고
    • The nonsense-mediated decay pathway and mutually exclusive expression of alternatively spliced FGFR2IIIb and -IIIc mRNAs
    • 1:CAS:528:DC%2BD3MXht1Gnsro%3D 11042206
    • Jones RB, Wang F, Luo Y, Yu C, Jin C, Suzuki T, Kan M, McKeehan WL (2001) The nonsense-mediated decay pathway and mutually exclusive expression of alternatively spliced FGFR2IIIb and -IIIc mRNAs. J Biol Chem 276:4158-4167. doi: 10.1074/jbc.M006151200
    • (2001) J Biol Chem , vol.276 , pp. 4158-4167
    • Jones, R.B.1    Wang, F.2    Luo, Y.3    Yu, C.4    Jin, C.5    Suzuki, T.6    Kan, M.7    McKeehan, W.L.8
  • 222
    • 84922537688 scopus 로고    scopus 로고
    • Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling
    • 1:CAS:528:DC%2BC2cXhsVarsLfF 25159151
    • Sharma K, D'Souza RC, Tyanova S, Schaab C, Wisniewski JR, Cox J, Mann M (2014) Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling. Cell Rep 8:1583-1594. doi: 10.1016/j.celrep.2014.07.036
    • (2014) Cell Rep , vol.8 , pp. 1583-1594
    • Sharma, K.1    D'Souza, R.C.2    Tyanova, S.3    Schaab, C.4    Wisniewski, J.R.5    Cox, J.6    Mann, M.7


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