-
1
-
-
32944458421
-
The human RNA surveillance factor UPF1 is required for S phase progression and genome stability
-
DOI 10.1016/j.cub.2006.01.018, PII S0960982206000959
-
Azzalin, C.M. & Lingner, J. The human RNA surveillance factor UPF1 is required for S phase progression and genome stability. Curr. Biol. 16, 433-439 (2006). (Pubitemid 43259356)
-
(2006)
Current Biology
, vol.16
, Issue.4
, pp. 433-439
-
-
Azzalin, C.M.1
Lingner, J.2
-
2
-
-
80053615725
-
Human UPF1 interacts with TPP1 and telomerase and sustains telomere leading-strand replication
-
Chawla, R. et al. Human UPF1 interacts with TPP1 and telomerase and sustains telomere leading-strand replication. EMBO J. 30, 4047-4058 (2011).
-
(2011)
EMBO J.
, vol.30
, pp. 4047-4058
-
-
Chawla, R.1
-
3
-
-
12944327374
-
Mammalian Staufen1 recruits Upf1 to specific mRNA 3′UTRs so as to elicit mRNA decay
-
DOI 10.1016/j.cell.2004.11.050, PII S0092867404011572
-
Kim, Y.K., Furic, L., Desgroseillers, L. & Maquat, L.E. Mammalian Staufen1 recruits Upf1 to specifc mRNA 3′UTRs so as to elicit mRNA decay. Cell 120, 195-208 (2005). (Pubitemid 40174763)
-
(2005)
Cell
, vol.120
, Issue.2
, pp. 195-208
-
-
Kim, Y.K.1
Furic, L.2
DesGroseillers, L.3
Maquat, L.E.4
-
4
-
-
26944503146
-
Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1
-
DOI 10.1038/nsmb972, PII NSMB972
-
Kaygun, H. & Marzluff, W.F. Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1. Nat. Struct. Mol. Biol. 12, 794-800 (2005). (Pubitemid 43086254)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.9
, pp. 794-800
-
-
Kaygun, H.1
Marzluff, W.F.2
-
5
-
-
84867850145
-
NMD: A multifaceted response to premature translational termination
-
Kervestin, S. & Jacobson, A. NMD: a multifaceted response to premature translational termination. Nat. Rev. Mol. Cell Biol. 13, 700-712 (2012).
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 700-712
-
-
Kervestin, S.1
Jacobson, A.2
-
6
-
-
77949904260
-
Nonsense-mediated mRNA decay in human cells: Mechanistic insights, functions beyond quality control and the double-life of NMD factors
-
Nicholson, P. et al. Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell Mol. Life Sci. 67, 677-700 (2010).
-
(2010)
Cell Mol. Life Sci.
, vol.67
, pp. 677-700
-
-
Nicholson, P.1
-
7
-
-
84863218026
-
Aberrant growth and lethality of Arabidopsis defcient in nonsense-mediated RNA decay factors is caused by autoimmune-like response
-
Riehs-Kearnan, N., Gloggnitzer, J., Dekrout, B., Jonak, C. & Riha, K. Aberrant growth and lethality of Arabidopsis defcient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res. 40, 5615-5624 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5615-5624
-
-
Riehs-Kearnan, N.1
Gloggnitzer, J.2
Dekrout, B.3
Jonak, C.4
Riha, K.5
-
8
-
-
0035862813
-
Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability
-
Medghalchi, S.M. et al. Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability. Hum. Mol. Genet. 10, 99-105 (2001). (Pubitemid 32098119)
-
(2001)
Human Molecular Genetics
, vol.10
, Issue.2
, pp. 99-105
-
-
Medghalchi, S.M.1
Frischmeyer, P.A.2
Mendell, J.T.3
Kelly, A.G.4
Lawler, A.M.5
Dietz, H.C.6
-
9
-
-
67650096774
-
Nonsense-mediated mRNA decay effectors are essential for zebrafsh embryonic development and survival
-
Wittkopp, N. et al. Nonsense-mediated mRNA decay effectors are essential for zebrafsh embryonic development and survival. Mol. Cell Biol. 29, 3517-3528 (2009).
-
(2009)
Mol. Cell Biol.
, vol.29
, pp. 3517-3528
-
-
Wittkopp, N.1
-
10
-
-
79952651144
-
Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner
-
Avery, P. et al. Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner. RNA 17, 624-638 (2011).
-
(2011)
RNA
, vol.17
, pp. 624-638
-
-
Avery, P.1
-
11
-
-
6944256813
-
Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
-
DOI 10.1038/ng1429
-
Mendell, J.T., Sharif, N.A., Meyers, J.L., Martinez-Murillo, F. & Dietz, H.C. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat. Genet. 36, 1073-1078 (2004). (Pubitemid 41184468)
-
(2004)
Nature Genetics
, vol.36
, Issue.10
, pp. 1073-1078
-
-
Mendell, J.T.1
Sharifi, N.A.2
Meyers, J.L.3
Martinez-Murillo, F.4
Dietz, H.C.5
-
12
-
-
84873828345
-
Identifcation of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability
-
Tani, H. et al. Identifcation of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability. RNA Biol. 9, 1370-1379 (2012).
-
(2012)
RNA Biol.
, vol.9
, pp. 1370-1379
-
-
Tani, H.1
-
13
-
-
34547838641
-
The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the nonsense mediated decay pathway
-
DOI 10.1093/nar/gkm461
-
Viegas, M.H., Gehring, N.H., Breit, S., Hentze, M.W. & Kulozik, A.E. The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in effciency of the Nonsense Mediated Decay pathway. Nucleic Acids Res. 35, 4542-4551 (2007). (Pubitemid 47244605)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.13
, pp. 4542-4551
-
-
Viegas, M.H.1
Gehring, N.H.2
Breit, S.3
Hentze, M.W.4
Kulozik, A.E.5
-
14
-
-
81755172088
-
Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
-
Yepiskoposyan, H., Aeschimann, F., Nilsson, D., Okoniewski, M. & Muhlemann, O. Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA 17, 2108-2118 (2011).
-
(2011)
RNA
, vol.17
, pp. 2108-2118
-
-
Yepiskoposyan, H.1
Aeschimann, F.2
Nilsson, D.3
Okoniewski, M.4
Muhlemann, O.5
-
15
-
-
78650854687
-
RNA helicases at work: Binding and rearranging
-
Jankowsky, E. RNA helicases at work: binding and rearranging. Trends Biochem. Sci. 36, 19-29 (2011).
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
16
-
-
79952686670
-
Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
-
Chakrabarti, S. et al. Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Mol. Cell 41, 693-703 (2011).
-
(2011)
Mol. Cell
, vol.41
, pp. 693-703
-
-
Chakrabarti, S.1
-
17
-
-
33846186825
-
Structural and functional insights into the human Upf1 helicase core
-
DOI 10.1038/sj.emboj.7601464, PII 7601464
-
Cheng, Z., Muhlrad, D., Lim, M.K., Parker, R. & Song, H. Structural and functional insights into the human Upf1 helicase core. EMBO J. 26, 253-264 (2007). (Pubitemid 46094716)
-
(2007)
EMBO Journal
, vol.26
, Issue.1
, pp. 253-264
-
-
Cheng, Z.1
Muhlrad, D.2
Lim, M.K.3
Parker, R.4
Song, H.5
-
18
-
-
68249138707
-
Unusual bipartite mode of interaction between the nonsensemediated decay factors UPF1 and UPF2
-
Clerici, M. et al. Unusual bipartite mode of interaction between the nonsensemediated decay factors, UPF1 and UPF2. EMBO J. 28, 2293-2306 (2009).
-
(2009)
EMBO J.
, vol.28
, pp. 2293-2306
-
-
Clerici, M.1
-
19
-
-
0033835231
-
Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay
-
Bhattacharya, A. et al. Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay. RNA 6, 1226-1235 (2000).
-
(2000)
RNA
, vol.6
, pp. 1226-1235
-
-
Bhattacharya, A.1
-
20
-
-
37849005006
-
NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
-
Chamieh, H., Ballut, L., Bonneau, F. & Le Hir, H. NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Nat. Struct. Mol. Biol. 15, 85-93 (2008).
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 85-93
-
-
Chamieh, H.1
Ballut, L.2
Bonneau, F.3
Le Hir, H.4
-
21
-
-
2642656314
-
The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs
-
Czaplinski, K. et al. The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs. Genes Dev. 12, 1665-1677 (1998). (Pubitemid 28299517)
-
(1998)
Genes and Development
, vol.12
, Issue.11
, pp. 1665-1677
-
-
Czaplinski, K.1
Ruiz-Echevarria, M.J.2
Paushkin, S.V.3
Han, X.4
Weng, Y.5
Perlick, H.A.6
Dietz, H.C.7
Ter-Avanesyan, M.D.8
Peltz, S.W.9
-
22
-
-
84876362947
-
Tight intramolecular regulation of the human Upf1 helicase by its N-and C-terminal domains
-
Fiorini, F., Boudvillain, M. & Le Hir, H. Tight intramolecular regulation of the human Upf1 helicase by its N-and C-terminal domains. Nucleic Acids Res. 41, 2404-2415 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2404-2415
-
-
Fiorini, F.1
Boudvillain, M.2
Le Hir, H.3
-
23
-
-
78649949096
-
Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense-mediated mRNA decay
-
Franks, T.M., Singh, G. & Lykke-Andersen, J. Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense-mediated mRNA decay. Cell 143, 938-950 (2010).
-
(2010)
Cell
, vol.143
, pp. 938-950
-
-
Franks, T.M.1
Singh, G.2
Lykke-Andersen, J.3
-
24
-
-
32044435368
-
Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
-
DOI 10.1101/gad.1389006
-
Kashima, I. et al. Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev. 20, 355-367 (2006). (Pubitemid 43200289)
-
(2006)
Genes and Development
, vol.20
, Issue.3
, pp. 355-367
-
-
Kashima, I.1
Yamashita, A.2
Izumi, N.3
Kataoka, N.4
Morishita, R.5
Hoshino, S.6
Ohno, M.7
Dreyfuss, G.8
Ohno, S.9
-
25
-
-
43249084802
-
A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
-
Singh, G., Rebbapragada, I. & Lykke-Andersen, J. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol. 6, e111 (2008).
-
(2008)
PLoS Biol.
, vol.6
-
-
Singh, G.1
Rebbapragada, I.2
Lykke-Andersen, J.3
-
26
-
-
0036237537
-
+] propagation
-
DOI 10.1128/MCB.22.10.3301-3315.2002
-
Cosson, B. et al. Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not infuence [PSI(+)] propagation. Mol. Cell Biol. 22, 3301-3315 (2002). (Pubitemid 34453972)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.10
, pp. 3301-3315
-
-
Cosson, B.1
Couturier, A.2
Chabelskaya, S.3
Kiktev, D.4
Inge-Vechtomov, S.5
Philippe, M.6
Zhouravleva, G.7
-
27
-
-
0033546405
-
The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3′-poly(A) tail of mRNA: Direct association of erf3/GSPT with polyadenylate-binding protein
-
Hoshino, S., Imai, M., Kobayashi, T., Uchida, N. & Katada, T. The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3′-poly(A) tail of mRNA: direct association of erf3/GSPT with polyadenylate-binding protein. J. Biol. Chem. 274, 16677-16680 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 16677-16680
-
-
Hoshino, S.1
Imai, M.2
Kobayashi, T.3
Uchida, N.4
Katada, T.5
-
28
-
-
40949148553
-
Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
-
DOI 10.1038/emboj.2008.17, PII EMBOJ200817
-
Ivanov, P.V., Gehring, N.H., Kunz, J.B., Hentze, M.W. & Kulozik, A.E. Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J. 27, 736-747 (2008). (Pubitemid 351506680)
-
(2008)
EMBO Journal
, vol.27
, Issue.5
, pp. 736-747
-
-
Ivanov, P.V.1
Gehring, N.H.2
Kunz, J.B.3
Hentze, M.W.4
Kulozik, A.E.5
-
29
-
-
8544253956
-
A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
-
DOI 10.1038/nature03060
-
Amrani, N. et al. A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. Nature 432, 112-118 (2004). (Pubitemid 39490837)
-
(2004)
Nature
, vol.432
, Issue.7013
, pp. 112-118
-
-
Amrani, N.1
Ganesan, R.2
Kervestin, S.3
Mangus, D.A.4
Ghosh, S.5
Jacobson, A.6
-
30
-
-
33947609704
-
A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay
-
DOI 10.1038/sj.emboj.7601588, PII 7601588
-
Behm-Ansmant, I., Gatfeld, D., Rehwinkel, J., Hilgers, V. & Izaurralde, E. A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsensemediated mRNA decay. EMBO J. 26, 1591-1601 (2007). (Pubitemid 46480926)
-
(2007)
EMBO Journal
, vol.26
, Issue.6
, pp. 1591-1601
-
-
Behm-Ansmant, I.1
Gatfield, D.2
Rehwinkel, J.3
Hilgers, V.4
Izaurralde, E.5
-
31
-
-
43249093760
-
Posttranscriptional gene regulation by spatial rearrangement of the 3′ untranslated region
-
Eberle, A.B., Stalder, L., Mathys, H., Orozco, R.Z. & Muhlemann, O. Posttranscriptional gene regulation by spatial rearrangement of the 3′ untranslated region. PLoS Biol. 6, e92 (2008).
-
(2008)
PLoS Biol.
, vol.6
-
-
Eberle, A.B.1
Stalder, L.2
Mathys, H.3
Orozco, R.Z.4
Muhlemann, O.5
-
32
-
-
40449131535
-
Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay
-
DOI 10.1261/rna.815108
-
Silva, A.L., Ribeiro, P., Inacio, A., Liebhaber, S.A. & Romao, L. Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay. RNA 14, 563-576 (2008). (Pubitemid 351397821)
-
(2008)
RNA
, vol.14
, Issue.3
, pp. 563-576
-
-
Silva, A.L.1
Ribeiro, P.2
Inacio, A.3
Liebhaber, S.A.4
Romao, L.5
-
33
-
-
84860751669
-
The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3′ end
-
Melero, R. et al. The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3′ end. Nat. Struct. Mol. Biol. 19, 498-505 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 498-505
-
-
Melero, R.1
-
34
-
-
78651507958
-
The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8
-
Arias-Palomo, E. et al. The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8. Genes Dev. 25, 153-164 (2011).
-
(2011)
Genes Dev.
, vol.25
, pp. 153-164
-
-
Arias-Palomo, E.1
-
35
-
-
29144507015
-
The role of SMG-1 in nonsense-mediated mRNA decay
-
DOI 10.1016/j.bbapap.2005.10.002, PII S1570963905003468
-
Yamashita, A., Kashima, I. & Ohno, S. The role of SMG-1 in nonsense-mediated mRNA decay. Biochim. Biophys. Acta 1754, 305-315 (2005). (Pubitemid 41797712)
-
(2005)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1754
, Issue.1-2
, pp. 305-315
-
-
Yamashita, A.1
Kashima, I.2
Ohno, S.3
-
36
-
-
13944259434
-
SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway
-
DOI 10.1016/j.molcel.2005.01.010
-
Fukuhara, N. et al. SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway. Mol. Cell 17, 537-547 (2005). (Pubitemid 40269118)
-
(2005)
Molecular Cell
, vol.17
, Issue.4
, pp. 537-547
-
-
Fukuhara, N.1
Ebert, J.2
Unterholzner, L.3
Lindner, D.4
Izaurralde, E.5
Conti, E.6
-
37
-
-
84856858152
-
N-and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD
-
Okada-Katsuhata, Y. et al. N-and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD. Nucleic Acids Res. 40, 1251-1266 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1251-1266
-
-
Okada-Katsuhata, Y.1
-
38
-
-
84873026843
-
An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for effcient nonsensemediated mRNA decay
-
Jonas, S., Weichenrieder, O. & Izaurralde, E. An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for effcient nonsensemediated mRNA decay. Genes Dev. 27, 211-225 (2013).
-
(2013)
Genes Dev.
, vol.27
, pp. 211-225
-
-
Jonas, S.1
Weichenrieder, O.2
Izaurralde, E.3
-
39
-
-
58149265041
-
SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells
-
Eberle, A.B., Lykke-Andersen, S., Muhlemann, O. & Jensen, T.H. SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells. Nat. Struct. Mol. Biol. 16, 49-55 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 49-55
-
-
Eberle, A.B.1
Lykke-Andersen, S.2
Muhlemann, O.3
Jensen, T.H.4
-
40
-
-
57049126216
-
SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
-
Huntzinger, E., Kashima, I., Fauser, M., Sauliere, J. & Izaurralde, E. SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA 14, 2609-2617 (2008).
-
(2008)
RNA
, vol.14
, pp. 2609-2617
-
-
Huntzinger, E.1
Kashima, I.2
Fauser, M.3
Sauliere, J.4
Izaurralde, E.5
-
41
-
-
58149291462
-
Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex
-
Cho, H., Kim, K.M. & Kim, Y.K. Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex. Mol. Cell 33, 75-86 (2009).
-
(2009)
Mol. Cell
, vol.33
, pp. 75-86
-
-
Cho, H.1
Kim, K.M.2
Kim, Y.K.3
-
42
-
-
84874720941
-
SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay
-
Cho, H. et al. SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic Acids Res. 41, 1319-1328 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 1319-1328
-
-
Cho, H.1
-
43
-
-
8844245615
-
SMG7 acts as a molecular link between mRNA surveillance and mRNA decay
-
DOI 10.1016/j.molcel.2004.10.013, PII S1097276504006392
-
Unterholzner, L. & Izaurralde, E. SMG7 acts as a molecular link between mRNA surveillance and mRNA decay. Mol. Cell 16, 587-596 (2004). (Pubitemid 39531881)
-
(2004)
Molecular Cell
, vol.16
, Issue.4
, pp. 587-596
-
-
Unterholzner, L.1
Izaurralde, E.2
-
44
-
-
77958459763
-
Upf1 senses 3′UTR length to potentiate mRNA decay
-
Hogg, J.R. & Goff, S.P. Upf1 senses 3′UTR length to potentiate mRNA decay. Cell 143, 379-389 (2010).
-
(2010)
Cell
, vol.143
, pp. 379-389
-
-
Hogg, J.R.1
Goff, S.P.2
-
45
-
-
84874504687
-
Rules that govern UPF1 binding to mRNA 3′ UTRs
-
Kurosaki, T. & Maquat, L.E. Rules that govern UPF1 binding to mRNA 3′ UTRs. Proc. Natl. Acad. Sci. USA 110, 3357-3362 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 3357-3362
-
-
Kurosaki, T.1
Maquat, L.E.2
-
46
-
-
77954387023
-
ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
-
König, J. et al. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat. Struct. Mol. Biol. 17, 909-915 (2010).
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 909-915
-
-
König, J.1
-
47
-
-
84936744064
-
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
-
Sugimoto, Y. et al. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions. Genome Biol. 13, R67 (2012).
-
(2012)
Genome Biol.
, vol.13
-
-
Sugimoto, Y.1
-
48
-
-
78651271270
-
CLIPZ: A database and analysis environment for experimentally determined binding sites of RNA-binding proteins
-
Khorshid, M., Rodak, C. & Zavolan, M. CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. Nucleic Acids Res. 39, D245-D252 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Khorshid, M.1
Rodak, C.2
Zavolan, M.3
-
49
-
-
80052979901
-
RNA homeostasis governed by cell type-specifc and branched feedback loops acting on NMD
-
Huang, L. et al. RNA homeostasis governed by cell type-specifc and branched feedback loops acting on NMD. Mol. Cell 43, 950-961 (2011).
-
(2011)
Mol. Cell
, vol.43
, pp. 950-961
-
-
Huang, L.1
-
50
-
-
34249977890
-
Staufen1 regulates diverse classes of mammalian transcripts
-
DOI 10.1038/sj.emboj.7601712, PII 7601712
-
Kim, Y.K. et al. Staufen1 regulates diverse classes of mammalian transcripts. EMBO J. 26, 2670-2681 (2007). (Pubitemid 46884281)
-
(2007)
EMBO Journal
, vol.26
, Issue.11
, pp. 2670-2681
-
-
Kim, Y.K.1
Furic, L.2
Parisien, M.3
Major, F.4
DesGroseillers, L.5
Maquat, L.E.6
-
51
-
-
33847185603
-
A screen for nuclear transcripts identifes two linked noncoding RNAs associated with SC35 splicing domains
-
Hutchinson, J.N. et al. A screen for nuclear transcripts identifes two linked noncoding RNAs associated with SC35 splicing domains. BMC Genomics 8, 39 (2007).
-
(2007)
BMC Genomics
, vol.8
, pp. 39
-
-
Hutchinson, J.N.1
-
52
-
-
3042796497
-
Efficient downregulation of immunoglobulin μ mRNA with premature translation-termination codons requires the 5′-half of the VDJ exon
-
DOI 10.1093/nar/gkh651
-
Bühler, M., Paillusson, A. & Muhlemann, O. Effcient downregulation of immunoglobulin μ mRNA with premature translation- termination codons requires the 5′-half of the VDJ exon. Nucleic Acids Res. 32, 3304-3315 (2004). (Pubitemid 39117447)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.11
, pp. 3304-3315
-
-
Buhler, M.1
Paillusson, A.2
Muhlemann, O.3
-
53
-
-
0017577805
-
Inhibition of translation in eukaryotic systems by harringtonine
-
DOI 10.1111/j.1432-1033.1977.tb11256.x
-
Fresno, M., Jimenez, A. & Vazquez, D. Inhibition of translation in eukaryotic systems by harringtonine. Eur. J. Biochem. 72, 323-330 (1977). (Pubitemid 8022231)
-
(1977)
European Journal of Biochemistry
, vol.72
, Issue.2
, pp. 323-330
-
-
Fresno, M.1
Jimenez, A.2
Vazquez, D.3
-
54
-
-
0037046798
-
Translation is required to remove Y14 from mRNAs in the cytoplasm
-
DOI 10.1016/S0960-9822(02)00902-8, PII S0960982202009028
-
Dostie, J. & Dreyfuss, G. Translation is required to remove Y14 from mRNAs in the cytoplasm. Curr. Biol. 12, 1060-1067 (2002). (Pubitemid 34766927)
-
(2002)
Current Biology
, vol.12
, Issue.13
, pp. 1060-1067
-
-
Dostie, J.1
Dreyfuss, G.2
-
55
-
-
0035823036
-
Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20
-
DOI 10.1016/S0092-8674(01)00475-5
-
Ishigaki, Y., Li, X., Serin, G. & Maquat, L.E. Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20. Cell 106, 607-617 (2001). (Pubitemid 32879322)
-
(2001)
Cell
, vol.106
, Issue.5
, pp. 607-617
-
-
Ishigaki, Y.1
Li, X.2
Serin, G.3
Maquat, L.E.4
-
56
-
-
84869087484
-
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex
-
Saulière, J. et al. CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. Nat. Struct. Mol. Biol. 19, 1124-1131 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1124-1131
-
-
Saulière, J.1
-
57
-
-
0034704201
-
Human Upf proteins target an mRNA for nonsense-mediated decay when downstream of a termination codon
-
DOI 10.1016/S0092-8674(00)00214-2
-
Lykke-Andersen, J., Shu, M.D. & Steitz, J.A. Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103, 1121-1131 (2000). (Pubitemid 32037398)
-
(2000)
Cell
, vol.103
, Issue.7
, pp. 1121-1131
-
-
Lykke-Andersen, J.1
Shu, M.-D.2
Steitz, J.A.3
-
58
-
-
0037064145
-
Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts
-
DOI 10.1126/science.1074428
-
Mendell, J.T., ap Rhys, C.M. & Dietz, H.C. Separable roles for rent1/hUpf1 in altered splicing and decay of nonsense transcripts. Science 298, 419-422 (2002). (Pubitemid 35176351)
-
(2002)
Science
, vol.298
, Issue.5592
, pp. 419-422
-
-
Mendell, J.T.1
Ap Rhys, C.M.J.2
Dietz, H.C.3
-
60
-
-
0032771414
-
SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast
-
Page, M.F., Carr, B., Anders, K.R., Grimson, A. & Anderson, P. SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast. Mol. Cell Biol. 19, 5943-5951 (1999). (Pubitemid 29399299)
-
(1999)
Molecular and Cellular Biology
, vol.19
, Issue.9
, pp. 5943-5951
-
-
Page, M.F.1
Carr, B.2
Anders, K.R.3
Grimson, A.4
Anderson, P.5
-
61
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (2008). (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
62
-
-
70349667200
-
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
-
Hoffmann, S. et al. Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput. Biol. 5, e1000502 (2009).
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Hoffmann, S.1
-
63
-
-
2142738304
-
WebLogo: A sequence logo generator
-
DOI 10.1101/gr.849004
-
Crooks, G.E., Hon, G., Chandonia, J.M. & Brenner, S.E. WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190 (2004). (Pubitemid 38811555)
-
(2004)
Genome Research
, vol.14
, Issue.6
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
64
-
-
48249140621
-
FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology
-
Fejes, A.P. et al. FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinformatics 24, 1729-1730 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 1729-1730
-
-
Fejes, A.P.1
-
65
-
-
0029852510
-
Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I
-
DOI 10.1126/science.274.5292.1514
-
Jenny, A., Minvielle-Sebastia, L., Preker, P.J. & Keller, W. Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I. Science 274, 1514-1517 (1996). (Pubitemid 26403924)
-
(1996)
Science
, vol.274
, Issue.5292
, pp. 1514-1517
-
-
Jenny, A.1
Minvielle-Sebastia, L.2
Preker, P.J.3
Keller, W.4
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