-
1
-
-
34249870085
-
MRNA quality control: An ancient machinery recognizes and degrades mRNAs with nonsense codons
-
Behm-Ansmant, I., Kashima, I., Rehwinkel, J., Sauliere, J., Wittkopp, N. and Izaurralde, E. (2007) mRNA quality control: an ancient machinery recognizes and degrades mRNAs with nonsense codons. FEBS Lett., 581, 2845-2853.
-
(2007)
FEBS Lett.
, vol.581
, pp. 2845-2853
-
-
Behm-Ansmant, I.1
Kashima, I.2
Rehwinkel, J.3
Sauliere, J.4
Wittkopp, N.5
Izaurralde, E.6
-
2
-
-
33645277360
-
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
-
Doma, M.K. and Parker, R. (2006) Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature, 440, 561-564.
-
(2006)
Nature
, vol.440
, pp. 561-564
-
-
Doma, M.K.1
Parker, R.2
-
3
-
-
34547623918
-
Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA function
-
Isken, O. and Maquat, L.E. (2007) Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev., 21, 1833-1856.
-
(2007)
Genes Dev.
, vol.21
, pp. 1833-1856
-
-
Isken, O.1
Maquat, L.E.2
-
4
-
-
66049162655
-
Execution of nonsense-mediated mRNA decay: What defines a substrate?
-
Rebbapragada, I. and Lykke-Andersen, J. (2009) Execution of nonsense-mediated mRNA decay: what defines a substrate? Curr. Opin. Cell. Biol., 21, 394-402.
-
(2009)
Curr. Opin. Cell. Biol.
, vol.21
, pp. 394-402
-
-
Rebbapragada, I.1
Lykke-Andersen, J.2
-
5
-
-
38949195105
-
Messenger RNA regulation: To translate or to degrade
-
Shyu, A.B., Wilkinson, M.F. and van Hoof, A. (2008) Messenger RNA regulation: to translate or to degrade. EMBO J., 27, 471-481.
-
(2008)
EMBO J.
, vol.27
, pp. 471-481
-
-
Shyu, A.B.1
Wilkinson, M.F.2
Van Hoof, A.3
-
6
-
-
78649720695
-
Cutting the nonsense: The degradation of PTC-containing mRNAs
-
Nicholson, P. and Muhlemann, O. (2010) Cutting the nonsense: the degradation of PTC-containing mRNAs. Biochem. Soc. Trans., 38, 1615-1620.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 1615-1620
-
-
Nicholson, P.1
Muhlemann, O.2
-
7
-
-
77956663450
-
NMD: RNA biology meets human genetic medicine
-
Bhuvanagiri, M., Schlitter, A.M., Hentze, M.W. and Kulozik, A.E. (2010) NMD: RNA biology meets human genetic medicine. Biochem. J., 430, 365-377.
-
(2010)
Biochem. J.
, vol.430
, pp. 365-377
-
-
Bhuvanagiri, M.1
Schlitter, A.M.2
Hentze, M.W.3
Kulozik, A.E.4
-
8
-
-
0037415691
-
SMG-5, required for C.elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A
-
Anders, K.R., Grimson, A. and Anderson, P. (2003) SMG-5, required for C.elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A. EMBO J., 22, 641-650.
-
(2003)
EMBO J.
, vol.22
, pp. 641-650
-
-
Anders, K.R.1
Grimson, A.2
Anderson, P.3
-
9
-
-
25844435702
-
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
-
Rehwinkel, J., Letunic, I., Raes, J., Bork, P. and Izaurralde, E. (2005) Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA, 11, 1530-1544.
-
(2005)
RNA
, vol.11
, pp. 1530-1544
-
-
Rehwinkel, J.1
Letunic, I.2
Raes, J.3
Bork, P.4
Izaurralde, E.5
-
10
-
-
32644441003
-
Quality control of gene expression: A stepwise assembly pathway for the surveillance complex that triggers nonsense-mediated mRNA decay
-
Behm-Ansmant, I. and Izaurralde, E. (2006) Quality control of gene expression: a stepwise assembly pathway for the surveillance complex that triggers nonsense-mediated mRNA decay. Genes Dev., 20, 391-398.
-
(2006)
Genes Dev.
, vol.20
, pp. 391-398
-
-
Behm-Ansmant, I.1
Izaurralde, E.2
-
11
-
-
49949105213
-
The multiple lives of NMD factors: Balancing roles in gene and genome regulation
-
Isken, O. and Maquat, L.E. (2008) The multiple lives of NMD factors: balancing roles in gene and genome regulation. Nat. Rev. Genet., 9, 699-712.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 699-712
-
-
Isken, O.1
Maquat, L.E.2
-
12
-
-
65449178454
-
SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay
-
Yamashita, A., Izumi, N., Kashima, I., Ohnishi, T., Saari, B., Katsuhata, Y., Muramatsu, R., Morita, T., Iwamatsu, A., Hachiya, T. et al. (2009) SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. Genes Dev., 23, 1091-1105.
-
(2009)
Genes Dev.
, vol.23
, pp. 1091-1105
-
-
Yamashita, A.1
Izumi, N.2
Kashima, I.3
Ohnishi, T.4
Saari, B.5
Katsuhata, Y.6
Muramatsu, R.7
Morita, T.8
Iwamatsu, A.9
Hachiya, T.10
-
13
-
-
77953771590
-
AAA+ proteins RUVBL1 and RUVBL2 coordinate PIKK activity and function in nonsense-mediated mRNA decay
-
Izumi, N., Yamashita, A., Iwamatsu, A., Kurata, R., Nakamura, H., Saari, B., Hirano, H., Anderson, P. and Ohno, S. (2010) AAA+ proteins RUVBL1 and RUVBL2 coordinate PIKK activity and function in nonsense-mediated mRNA decay. Sci. Signal., 3, ra27.
-
(2010)
Sci. Signal.
, vol.3
-
-
Izumi, N.1
Yamashita, A.2
Iwamatsu, A.3
Kurata, R.4
Nakamura, H.5
Saari, B.6
Hirano, H.7
Anderson, P.8
Ohno, S.9
-
14
-
-
48349096149
-
Incomplete nonsense-mediated mRNA decay in Giardia lamblia
-
Chen, Y.H., Su, L.H. and Sun, C.H. (2008) Incomplete nonsense-mediated mRNA decay in Giardia lamblia. Int. J. Parasitol., 38, 1305-1307.
-
(2008)
Int. J. Parasitol.
, vol.38
, pp. 1305-1307
-
-
Chen, Y.H.1
Su, L.H.2
Sun, C.H.3
-
15
-
-
68249138707
-
Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2
-
Clerici, M., Mourao, A., Gutsche, I., Gehring, N.H., Hentze, M.W., Kulozik, A., Kadlec, J., Sattler, M. and Cusack, S. (2009) Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2. EMBO J., 28, 2293-2306.
-
(2009)
EMBO J.
, vol.28
, pp. 2293-2306
-
-
Clerici, M.1
Mourao, A.2
Gutsche, I.3
Gehring, N.H.4
Hentze, M.W.5
Kulozik, A.6
Kadlec, J.7
Sattler, M.8
Cusack, S.9
-
16
-
-
1842473091
-
The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3
-
Kadlec, J., Izaurralde, E. and Cusack, S. (2004) The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat. Struct. Mol. Biol., 11, 330-337.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 330-337
-
-
Kadlec, J.1
Izaurralde, E.2
Cusack, S.3
-
17
-
-
2642656314
-
The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs
-
Czaplinski, K., Ruiz-Echevarria, M.J., Paushkin, S.V., Han, X., Weng, Y., Perlick, H.A., Dietz, H.C., Ter-Avanesyan, M.D. and Peltz, S.W. (1998) The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs. Genes Dev., 12, 1665-1677.
-
(1998)
Genes Dev.
, vol.12
, pp. 1665-1677
-
-
Czaplinski, K.1
Ruiz-Echevarria, M.J.2
Paushkin, S.V.3
Han, X.4
Weng, Y.5
Perlick, H.A.6
Dietz, H.C.7
Ter-Avanesyan, M.D.8
Peltz, S.W.9
-
18
-
-
40949148553
-
Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
-
Ivanov, P.V., Gehring, N.H., Kunz, J.B., Hentze, M.W. and Kulozik, A.E. (2008) Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J., 27, 736-747.
-
(2008)
EMBO J.
, vol.27
, pp. 736-747
-
-
Ivanov, P.V.1
Gehring, N.H.2
Kunz, J.B.3
Hentze, M.W.4
Kulozik, A.E.5
-
19
-
-
32044435368
-
Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
-
Kashima, I., Yamashita, A., Izumi, N., Kataoka, N., Morishita, R., Hoshino, S., Ohno, M., Dreyfuss, G. and Ohno, S. (2006) Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev., 20, 355-367.
-
(2006)
Genes Dev.
, vol.20
, pp. 355-367
-
-
Kashima, I.1
Yamashita, A.2
Izumi, N.3
Kataoka, N.4
Morishita, R.5
Hoshino, S.6
Ohno, M.7
Dreyfuss, G.8
Ohno, S.9
-
20
-
-
0034284394
-
Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay
-
Ponting, C.P. (2000) Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay. Trends Biochem. Sci., 25, 423-426.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 423-426
-
-
Ponting, C.P.1
-
21
-
-
79952686670
-
Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
-
Chakrabarti, S., Jayachandran, U., Bonneau, F., Fiorini, F., Basquin, C., Domcke, S., Le Hir, H. and Conti, E. (2011) Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Mol. Cell, 41, 693-703.
-
(2011)
Mol. Cell
, vol.41
, pp. 693-703
-
-
Chakrabarti, S.1
Jayachandran, U.2
Bonneau, F.3
Fiorini, F.4
Basquin, C.5
Domcke, S.6
Le Hir, H.7
Conti, E.8
-
22
-
-
37849005006
-
NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
-
Chamieh, H., Ballut, L., Bonneau, F. and Le Hir, H. (2008) NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Nat. Struct. Mol. Biol., 15, 85-93.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 85-93
-
-
Chamieh, H.1
Ballut, L.2
Bonneau, F.3
Le Hir, H.4
-
23
-
-
0034751160
-
Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)
-
Serin, G., Gersappe, A., Black, J.D., Aronoff, R. and Maquat, L.E. (2001) Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4). Mol. Cell. Biol., 21, 209-223.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 209-223
-
-
Serin, G.1
Gersappe, A.2
Black, J.D.3
Aronoff, R.4
Maquat, L.E.5
-
24
-
-
0038814325
-
Y14 and hUpf3b form an NMD-activating complex
-
Gehring, N.H., Neu-Yilik, G., Schell, T., Hentze, M.W. and Kulozik, A.E. (2003) Y14 and hUpf3b form an NMD-activating complex. Mol. Cell, 11, 939-949.
-
(2003)
Mol. Cell
, vol.11
, pp. 939-949
-
-
Gehring, N.H.1
Neu-Yilik, G.2
Schell, T.3
Hentze, M.W.4
Kulozik, A.E.5
-
25
-
-
33747182255
-
The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA
-
Bono, F., Ebert, J., Lorentzen, E. and Conti, E. (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell, 126, 713-725.
-
(2006)
Cell
, vol.126
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
26
-
-
77953370114
-
Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex
-
Buchwald, G., Ebert, J., Basquin, C., Sauliere, J., Jayachandran, U., Bono, F., Le Hir, H. and Conti, E. (2010) Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex. Proc. Natl Acad. Sci. USA, 107, 10050-10055.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 10050-10055
-
-
Buchwald, G.1
Ebert, J.2
Basquin, C.3
Sauliere, J.4
Jayachandran, U.5
Bono, F.6
Le Hir, H.7
Conti, E.8
-
27
-
-
19344366251
-
Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
-
Lejeune, F. and Maquat, L.E. (2005) Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. Curr. Opin. Cell Biol., 17, 309-315.
-
(2005)
Curr. Opin. Cell Biol.
, vol.17
, pp. 309-315
-
-
Lejeune, F.1
Maquat, L.E.2
-
28
-
-
0035801373
-
The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
-
Le Hir, H., Gatfield, D., Izaurralde, E. and Moore, M.J. (2001) The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J., 20, 4987-4997.
-
(2001)
EMBO J.
, vol.20
, pp. 4987-4997
-
-
Le Hir, H.1
Gatfield, D.2
Izaurralde, E.3
Moore, M.J.4
-
29
-
-
0035823150
-
Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex
-
Kim, V.N., Kataoka, N. and Dreyfuss, G. (2001) Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex. Science, 293, 1832-1836.
-
(2001)
Science
, vol.293
, pp. 1832-1836
-
-
Kim, V.N.1
Kataoka, N.2
Dreyfuss, G.3
-
30
-
-
0034704201
-
Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
-
Lykke-Andersen, J., Shu, M.D. and Steitz, J.A. (2000) Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell, 103, 1121-1131.
-
(2000)
Cell
, vol.103
, pp. 1121-1131
-
-
Lykke-Andersen, J.1
Shu, M.D.2
Steitz, J.A.3
-
31
-
-
0035449691
-
Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay
-
Yamashita, A., Ohnishi, T., Kashima, I., Taya, Y. and Ohno, S. (2001) Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. Genes Dev., 15, 2215-2228.
-
(2001)
Genes Dev.
, vol.15
, pp. 2215-2228
-
-
Yamashita, A.1
Ohnishi, T.2
Kashima, I.3
Taya, Y.4
Ohno, S.5
-
32
-
-
70350324640
-
Emerging common themes in regulation of PIKKs and PI3Ks
-
Lempiainen, H. and Halazonetis, T.D. (2009) Emerging common themes in regulation of PIKKs and PI3Ks. EMBO J., 28, 3067-3073.
-
(2009)
EMBO J.
, vol.28
, pp. 3067-3073
-
-
Lempiainen, H.1
Halazonetis, T.D.2
-
33
-
-
78651507958
-
The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8
-
Arias-Palomo, E., Yamashita, A., Fernandez, I.S., Nunez-Ramirez, R., Bamba, Y., Izumi, N., Ohno, S. and Llorca, O. (2012) The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8. Genes Dev., 25, 153-164.
-
(2012)
Genes Dev.
, vol.25
, pp. 153-164
-
-
Arias-Palomo, E.1
Yamashita, A.2
Fernandez, I.S.3
Nunez-Ramirez, R.4
Bamba, Y.5
Izumi, N.6
Ohno, S.7
Llorca, O.8
-
34
-
-
13944259434
-
SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway
-
Fukuhara, N., Ebert, J., Unterholzner, L., Lindner, D., Izaurralde, E. and Conti, E. (2005) SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway. Mol. Cell, 17, 537-547.
-
(2005)
Mol. Cell
, vol.17
, pp. 537-547
-
-
Fukuhara, N.1
Ebert, J.2
Unterholzner, L.3
Lindner, D.4
Izaurralde, E.5
Conti, E.6
-
35
-
-
57049126216
-
SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
-
Huntzinger, E., Kashima, I., Fauser, M., Sauliere, J. and Izaurralde, E. (2008) SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA, 14, 2609-2617.
-
(2008)
RNA
, vol.14
, pp. 2609-2617
-
-
Huntzinger, E.1
Kashima, I.2
Fauser, M.3
Sauliere, J.4
Izaurralde, E.5
-
36
-
-
0037279012
-
Characterization of human Smg5/7a: A protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1
-
Chiu, S.Y., Serin, G., Ohara, O. and Maquat, L.E. (2003) Characterization of human Smg5/7a: a protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1. RNA, 9, 77-87.
-
(2003)
RNA
, vol.9
, pp. 77-87
-
-
Chiu, S.Y.1
Serin, G.2
Ohara, O.3
Maquat, L.E.4
-
37
-
-
84860751669
-
The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3 end
-
Melero, R., Buchwald, G., Castano, R., Raabe, M., Gil, D., Lazaro, M., Urlaub, H., Conti, E. and Llorca, O. (2012) The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3 end. Nat. Struct. Mol. Biol., 19, 498-505.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 498-505
-
-
Melero, R.1
Buchwald, G.2
Castano, R.3
Raabe, M.4
Gil, D.5
Lazaro, M.6
Urlaub, H.7
Conti, E.8
Llorca, O.9
-
38
-
-
0031025296
-
Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway
-
He, F., Brown, A.H. and Jacobson, A. (1997) Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway. Mol. Cell. Biol., 17, 1580-1594.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 1580-1594
-
-
He, F.1
Brown, A.H.2
Jacobson, A.3
-
39
-
-
0032473972
-
Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation
-
Craig, A.W., Haghighat, A., Yu, A.T. and Sonenberg, N. (1998) Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation. Nature, 392, 520-523.
-
(1998)
Nature
, vol.392
, pp. 520-523
-
-
Craig, A.W.1
Haghighat, A.2
Yu, A.T.3
Sonenberg, N.4
-
40
-
-
0034852936
-
Crystal structure of the human nuclear cap binding complex
-
Mazza, C., Ohno, M., Segref, A., Mattaj, I.W. and Cusack, S. (2001) Crystal structure of the human nuclear cap binding complex. Mol. Cell, 8, 383-396.
-
(2001)
Mol. Cell
, vol.8
, pp. 383-396
-
-
Mazza, C.1
Ohno, M.2
Segref, A.3
Mattaj, I.W.4
Cusack, S.5
-
41
-
-
0029968997
-
Functional dissection of eukaryotic initiation factor 4F: The 4A subunit and the central domain of the 4G subunit are sufficient to mediate internal entry of 43S preinitiation complexes
-
Pestova, T.V., Shatsky, I.N. and Hellen, C.U. (1996) Functional dissection of eukaryotic initiation factor 4F: the 4A subunit and the central domain of the 4G subunit are sufficient to mediate internal entry of 43S preinitiation complexes. Mol. Cell. Biol., 16, 6870-6878.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 6870-6878
-
-
Pestova, T.V.1
Shatsky, I.N.2
Hellen, C.U.3
-
42
-
-
47749123500
-
Crystal structure of the yeast eIF4A-eIF4G complex: An RNA-helicase controlled by protein-protein interactions
-
Schutz, P., Bumann, M., Oberholzer, A.E., Bieniossek, C., Trachsel, H., Altmann, M. and Baumann, U. (2008) Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions. Proc. Natl Acad. Sci. USA, 105, 9564-9569.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 9564-9569
-
-
Schutz, P.1
Bumann, M.2
Oberholzer, A.E.3
Bieniossek, C.4
Trachsel, H.5
Altmann, M.6
Baumann, U.7
-
44
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr., 40, 658-674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
45
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W.G. and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr., 66, 486-501.
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
46
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G.N., Vagin, A.A. and Dodson, E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr., 53, 240-255.
-
(1997)
Acta Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
47
-
-
16644364842
-
REFMAC5 dictionary: Organization of prior chemical knowledge and guidelines for its use
-
Vagin, A.A., Steiner, R.A., Lebedev, A.A., Potterton, L., McNicholas, S., Long, F. and Murshudov, G.N. (2004) REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use. Acta Crystallogr., 60, 2184-2195.
-
(2004)
Acta Crystallogr.
, vol.60
, pp. 2184-2195
-
-
Vagin, A.A.1
Steiner, R.A.2
Lebedev, A.A.3
Potterton, L.4
McNicholas, S.5
Long, F.6
Murshudov, G.N.7
-
48
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G.M. (2008) A short history of SHELX. Acta Crystallogr. A, 64, 112-122.
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
49
-
-
36549027357
-
Automated structure solution with autoSHARP
-
Vonrhein, C., Blanc, E., Roversi, P. and Bricogne, G. (2007) Automated structure solution with autoSHARP. Methods Mol. Biol., 364, 215-230.
-
(2007)
Methods Mol. Biol.
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
50
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C. and Ferrin, T.E. (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem., 25, 1605-1612.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
51
-
-
25844512736
-
Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements
-
Gehring, N.H., Kunz, J.B., Neu-Yilik, G., Breit, S., Viegas, M.H., Hentze, M.W. and Kulozik, A.E. (2005) Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements. Mol. Cell, 20, 65-75.
-
(2005)
Mol. Cell
, vol.20
, pp. 65-75
-
-
Gehring, N.H.1
Kunz, J.B.2
Neu-Yilik, G.3
Breit, S.4
Viegas, M.H.5
Hentze, M.W.6
Kulozik, A.E.7
-
52
-
-
84866916889
-
CWC22 connects pre-mRNA splicing and exon junction complex assembly
-
Steckelberg, A.L., Boehm, V., Gromadzka, A.M. and Gehring, N.H. (2012) CWC22 connects pre-mRNA splicing and exon junction complex assembly. Cell Rep., 2, 454-461.
-
(2012)
Cell Rep.
, vol.2
, pp. 454-461
-
-
Steckelberg, A.L.1
Boehm, V.2
Gromadzka, A.M.3
Gehring, N.H.4
-
53
-
-
0034161321
-
NPS@: Network protein sequence analysis
-
Combet, C., Blanchet, C., Geourjon, C. and Deleage, G. (2000) NPS@: network protein sequence analysis. Trends Biochem. Sci., 25, 147-150.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 147-150
-
-
Combet, C.1
Blanchet, C.2
Geourjon, C.3
Deleage, G.4
-
54
-
-
0242458482
-
Protein disorder prediction: Implications for structural proteomics
-
Linding, R., Jensen, L.J., Diella, F., Bork, P., Gibson, T.J. and Russell, R.B. (2003) Protein disorder prediction: implications for structural proteomics. Structure, 11, 1453-1459.
-
(2003)
Structure
, vol.11
, pp. 1453-1459
-
-
Linding, R.1
Jensen, L.J.2
Diella, F.3
Bork, P.4
Gibson, T.J.5
Russell, R.B.6
-
55
-
-
33646229126
-
Role for Upf2p phosphorylation in Saccharomyces cerevisiae nonsense-mediated mRNA decay
-
Wang, W., Cajigas, I.J., Peltz, S.W., Wilkinson, M.F. and Gonzalez, C.I. (2006) Role for Upf2p phosphorylation in Saccharomyces cerevisiae nonsense-mediated mRNA decay. Mol. Cell. Biol., 26, 3390-3400.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 3390-3400
-
-
Wang, W.1
Cajigas, I.J.2
Peltz, S.W.3
Wilkinson, M.F.4
Gonzalez, C.I.5
-
56
-
-
84856858152
-
N-and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD
-
Okada-Katsuhata, Y., Yamashita, A., Kutsuzawa, K., Izumi, N., Hirahara, F. and Ohno, S. (2011) N-and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD. Nucleic Acids Res., 40, 1251-1266.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. 1251-1266
-
-
Okada-Katsuhata, Y.1
Yamashita, A.2
Kutsuzawa, K.3
Izumi, N.4
Hirahara, F.5
Ohno, S.6
-
57
-
-
0033828440
-
Eukaryote-specific domains in translation initiation factors: Implications for translation regulation and evolution of the translation system
-
Aravind, L. and Koonin, E.V. (2000) Eukaryote-specific domains in translation initiation factors: implications for translation regulation and evolution of the translation system. Genome Res., 10, 1172-1184.
-
(2000)
Genome Res.
, vol.10
, pp. 1172-1184
-
-
Aravind, L.1
Koonin, E.V.2
-
58
-
-
24944572189
-
EIF4G and CBP80 share a common origin and similar domain organization: Implications for the structure and function of eIF4G
-
Marintchev, A. and Wagner, G. (2005) eIF4G and CBP80 share a common origin and similar domain organization: implications for the structure and function of eIF4G. Biochemistry, 44, 12265-12272.
-
(2005)
Biochemistry
, vol.44
, pp. 12265-12272
-
-
Marintchev, A.1
Wagner, G.2
-
59
-
-
4344570947
-
SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA Decay in Caenorhabditis elegans
-
Grimson, A., O'Connor, S., Newman, C.L. and Anderson, P. (2004) SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA Decay in Caenorhabditis elegans. Mol. Cell. Biol., 24, 7483-7490.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 7483-7490
-
-
Grimson, A.1
O'Connor, S.2
Newman, C.L.3
Anderson, P.4
-
60
-
-
38049184488
-
Profiling of UV-induced ATM/ATR signaling pathways
-
Stokes, M.P., Rush, J., Macneill, J., Ren, J.M., Sprott, K., Nardone, J., Yang, V., Beausoleil, S.A., Gygi, S.P., Livingstone, M. et al. (2007) Profiling of UV-induced ATM/ATR signaling pathways. Proc. Natl Acad. Sci. USA, 104, 19855-19860.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 19855-19860
-
-
Stokes, M.P.1
Rush, J.2
Macneill, J.3
Ren, J.M.4
Sprott, K.5
Nardone, J.6
Yang, V.7
Beausoleil, S.A.8
Gygi, S.P.9
Livingstone, M.10
|