-
1
-
-
4644288309
-
Microarray-based analyses of mRNA decay in the regulation of mammalian gene expression
-
Raghavan A, Bohjanen PR, (2004) Microarray-based analyses of mRNA decay in the regulation of mammalian gene expression. Brief Funct Genomic Proteomic 3: 112-124.
-
(2004)
Brief Funct Genomic Proteomic
, vol.3
, pp. 112-124
-
-
Raghavan, A.1
Bohjanen, P.R.2
-
2
-
-
77950295790
-
Minireview: global regulation and dynamics of ribonucleic Acid
-
Keene JD, (2010) Minireview: global regulation and dynamics of ribonucleic Acid. Endocrinology 151: 1391-1397.
-
(2010)
Endocrinology
, vol.151
, pp. 1391-1397
-
-
Keene, J.D.1
-
3
-
-
84858446718
-
Regulation of cytoplasmic mRNA decay
-
Schoenberg DR, Maquat LE, (2012) Regulation of cytoplasmic mRNA decay. Nat Rev Genet 13: 246-259.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 246-259
-
-
Schoenberg, D.R.1
Maquat, L.E.2
-
4
-
-
38849117246
-
RNA-protein interactions and control of mRNA stability in neurons
-
Bolognani F, Perrone-Bizzozero NI, (2008) RNA-protein interactions and control of mRNA stability in neurons. J Neurosci Res 86: 481-489.
-
(2008)
J Neurosci Res
, vol.86
, pp. 481-489
-
-
Bolognani, F.1
Perrone-Bizzozero, N.I.2
-
5
-
-
65249141709
-
Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells
-
Sharova LV, Sharov AA, Nedorezov T, Piao Y, Shaik N, et al. (2009) Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells. DNA Res 16: 45-58.
-
(2009)
DNA Res
, vol.16
, pp. 45-58
-
-
Sharova, L.V.1
Sharov, A.A.2
Nedorezov, T.3
Piao, Y.4
Shaik, N.5
-
6
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
-
7
-
-
84860575639
-
Genome-wide determination of RNA stability reveals hundreds of short-lived non-coding transcripts in mammals
-
Tani H, Mizutani R, Salam KA, Tano K, Ijiri K, et al. (2012) Genome-wide determination of RNA stability reveals hundreds of short-lived non-coding transcripts in mammals. Genome Res 22: 947-956.
-
(2012)
Genome Res
, vol.22
, pp. 947-956
-
-
Tani, H.1
Mizutani, R.2
Salam, K.A.3
Tano, K.4
Ijiri, K.5
-
8
-
-
77951083459
-
Major role for mRNA stability in shaping the kinetics of gene induction
-
Elkon R, Zlotorynski E, Zeller KI, Agami R, (2010) Major role for mRNA stability in shaping the kinetics of gene induction. BMC Genomics 11: 259.
-
(2010)
BMC Genomics
, vol.11
, pp. 259
-
-
Elkon, R.1
Zlotorynski, E.2
Zeller, K.I.3
Agami, R.4
-
9
-
-
79955768436
-
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
-
Rabani M, Levin JZ, Fan L, Adiconis X, Raychowdhury R, et al. (2011) Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. Nat Biotechnol 29: 436-442.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 436-442
-
-
Rabani, M.1
Levin, J.Z.2
Fan, L.3
Adiconis, X.4
Raychowdhury, R.5
-
10
-
-
84856221968
-
A complex 'mRNA degradation code' controls gene expression during animal development
-
Alonso CR, (2012) A complex 'mRNA degradation code' controls gene expression during animal development. Trends Genet 28: 78-88.
-
(2012)
Trends Genet
, vol.28
, pp. 78-88
-
-
Alonso, C.R.1
-
11
-
-
66049133419
-
Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells
-
Chekulaeva M, Filipowicz W, (2009) Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells. Curr Opin Cell Biol 21: 452-460.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 452-460
-
-
Chekulaeva, M.1
Filipowicz, W.2
-
12
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W, (2010) The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 11: 597-610.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
13
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, et al. (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458: 223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
-
14
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
Guttman M, Rinn JL, (2012) Modular regulatory principles of large non-coding RNAs. Nature 482: 339-346.
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
15
-
-
84867593042
-
MicroRNA degradation and turnover: regulating the regulators
-
Zhang Z, Qin YW, Brewer G, Jing Q, (2012) MicroRNA degradation and turnover: regulating the regulators. Wiley Interdiscip Rev RNA 3: 593-600.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, pp. 593-600
-
-
Zhang, Z.1
Qin, Y.W.2
Brewer, G.3
Jing, Q.4
-
16
-
-
84866626156
-
MicroRNA turnover: when, how, and why
-
Rüegger S, Großhans H, (2012) MicroRNA turnover: when, how, and why. Trends Biochem Sci 37: 436-446.
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 436-446
-
-
Rüegger, S.1
Großhans, H.2
-
17
-
-
84860581983
-
Genome-wide analysis of long noncoding RNA stability
-
Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, et al. (2012) Genome-wide analysis of long noncoding RNA stability. Genome Res 22: 885-898.
-
(2012)
Genome Res
, vol.22
, pp. 885-898
-
-
Clark, M.B.1
Johnston, R.L.2
Inostroza-Ponta, M.3
Fox, A.H.4
Fortini, E.5
-
18
-
-
0023765743
-
Genes specifically expressed at growth arrest of mammalian cells
-
Schneider C, King RM, Philipson L, (1988) Genes specifically expressed at growth arrest of mammalian cells. Cell 54: 787-793.
-
(1988)
Cell
, vol.54
, pp. 787-793
-
-
Schneider, C.1
King, R.M.2
Philipson, L.3
-
19
-
-
0031756336
-
Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5′-terminal oligopyrimidine gene family reveals common features of snoRNA host genes
-
Smith CM, Steitz JA, (1998) Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5′-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. Mol Cell Biol 18: 6897-6909.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 6897-6909
-
-
Smith, C.M.1
Steitz, J.A.2
-
20
-
-
0026773897
-
Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development
-
Coccia EM, Cicala C, Charlesworth A, Ciccarelli C, Rossi GB, et al. (1992) Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development. Mol Cell Biol 12: 3514-3521.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 3514-3521
-
-
Coccia, E.M.1
Cicala, C.2
Charlesworth, A.3
Ciccarelli, C.4
Rossi, G.B.5
-
21
-
-
0032519710
-
Effects of nutrient deprivation and differentiation on the expression of growth-arrest genes (gas and gadd) in F9 embryonal carcinoma cells
-
Fleming JV, Hay SM, Harries DN, Rees WD, (1998) Effects of nutrient deprivation and differentiation on the expression of growth-arrest genes (gas and gadd) in F9 embryonal carcinoma cells. Biochem J 330: 573-579.
-
(1998)
Biochem J
, vol.330
, pp. 573-579
-
-
Fleming, J.V.1
Hay, S.M.2
Harries, D.N.3
Rees, W.D.4
-
22
-
-
0036330420
-
Amino acid deficiency up-regulates specific mRNAs in murine embryonic cells
-
Fontanier-Razzaq N, Harries DN, Hay SM, Rees WD, (2002) Amino acid deficiency up-regulates specific mRNAs in murine embryonic cells. J Nutr 132: 2137-2142.
-
(2002)
J Nutr
, vol.132
, pp. 2137-2142
-
-
Fontanier-Razzaq, N.1
Harries, D.N.2
Hay, S.M.3
Rees, W.D.4
-
23
-
-
73049097101
-
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
-
Friedel CC, Dölken L, Ruzsics Z, Koszinowski UH, Zimmer R, (2009) Conserved principles of mammalian transcriptional regulation revealed by RNA half-life. Nucleic Acids Res 37: e115.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Friedel, C.C.1
Dölken, L.2
Ruzsics, Z.3
Koszinowski, U.H.4
Zimmer, R.5
-
24
-
-
6944256813
-
Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
-
Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC, (2004) Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat Genet 36: 1073-1078.
-
(2004)
Nat Genet
, vol.36
, pp. 1073-1078
-
-
Mendell, J.T.1
Sharifi, N.A.2
Meyers, J.L.3
Martinez-Murillo, F.4
Dietz, H.C.5
-
25
-
-
85008740092
-
Up-frameshift protein 1 (UPF1): Multitalented entertainer in RNA decay
-
Imamachi N, Tani H, Akimitsu N, (2012) Up-frameshift protein 1 (UPF1): Multitalented entertainer in RNA decay. Drug Discov Ther 6: 55-61.
-
(2012)
Drug Discov Ther
, vol.6
, pp. 55-61
-
-
Imamachi, N.1
Tani, H.2
Akimitsu, N.3
-
26
-
-
84873828345
-
Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability
-
Tani H, Imamachi N, Salam KA, Mizutani R, Ijiri K, et al. (2012) Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability. RNA Biol 9: 1370-1379.
-
(2012)
RNA Biol
, vol.9
, pp. 1370-1379
-
-
Tani, H.1
Imamachi, N.2
Salam, K.A.3
Mizutani, R.4
Ijiri, K.5
-
27
-
-
34547927647
-
Introns play an essential role in splicing-dependent formation of the exon junction complex
-
Ideue T, Sasaki YT, Hagiwara M, Hirose T, (2007) Introns play an essential role in splicing-dependent formation of the exon junction complex. Genes Dev 21: 1993-1998.
-
(2007)
Genes Dev
, vol.21
, pp. 1993-1998
-
-
Ideue, T.1
Sasaki, Y.T.2
Hagiwara, M.3
Hirose, T.4
-
28
-
-
43149098277
-
Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5)
-
Mourtada-Maarabouni M, Hedge VL, Kirkham L, Farzaneh F, Williams GT, (2008) Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5). J Cell Sci 121: 939-946.
-
(2008)
J Cell Sci
, vol.121
, pp. 939-946
-
-
Mourtada-Maarabouni, M.1
Hedge, V.L.2
Kirkham, L.3
Farzaneh, F.4
Williams, G.T.5
-
29
-
-
58249098615
-
GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer
-
Mourtada-Maarabouni M, Pickard MR, Hedge VL, Farzaneh F, Williams GT, (2009) GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer. Oncogene 28: 195-208.
-
(2009)
Oncogene
, vol.28
, pp. 195-208
-
-
Mourtada-Maarabouni, M.1
Pickard, M.R.2
Hedge, V.L.3
Farzaneh, F.4
Williams, G.T.5
-
30
-
-
77951638287
-
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor
-
Kino T, Hurt DE, Ichijo T, Nader N, Chrousos GP, (2010) Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor. Sci Signal 3: ra8.
-
(2010)
Sci Signal
, vol.3
-
-
Kino, T.1
Hurt, D.E.2
Ichijo, T.3
Nader, N.4
Chrousos, G.P.5
-
31
-
-
57749180679
-
Messenger RNA half-life measurements in mammalian cells
-
Chen CY, Ezzeddine N, Shyu AB, (2008) Messenger RNA half-life measurements in mammalian cells. Methods Enzymol 448: 335-357.
-
(2008)
Methods Enzymol
, vol.448
, pp. 335-357
-
-
Chen, C.Y.1
Ezzeddine, N.2
Shyu, A.B.3
-
32
-
-
0034053967
-
UV-Induced stabilization of c-fos and other short-lived mRNAs
-
Blattner C, Kannouche P, Litfin M, Bender K, Rahmsdorf HJ, et al. (2000) UV-Induced stabilization of c-fos and other short-lived mRNAs. Mol Cell Biol 20: 3616-3625.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 3616-3625
-
-
Blattner, C.1
Kannouche, P.2
Litfin, M.3
Bender, K.4
Rahmsdorf, H.J.5
-
33
-
-
84868252050
-
Genome-wide technology for determining RNA stability in mammalian cells: Historical perspective and recent advantages based on modified nucleotide labeling
-
Tani H, Akimitsu N, (2012) Genome-wide technology for determining RNA stability in mammalian cells: Historical perspective and recent advantages based on modified nucleotide labeling. RNA Biol 9: 1233-1238.
-
(2012)
RNA Biol
, vol.9
, pp. 1233-1238
-
-
Tani, H.1
Akimitsu, N.2
-
34
-
-
57349121991
-
Exploring RNA transcription and turnover in vivo by using click chemistry
-
Jao CY, Salic A, (2008) Exploring RNA transcription and turnover in vivo by using click chemistry. Proc Natl Acad Sci USA 105: 15779-15784.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15779-15784
-
-
Jao, C.Y.1
Salic, A.2
-
35
-
-
84859583136
-
U7 small nuclear ribonucleoprotein represses histone gene transcription in cell cycle-arrested cells
-
Ideue T, Adachi S, Naganuma T, Tanigawa A, Natsume T, et al. (2012) U7 small nuclear ribonucleoprotein represses histone gene transcription in cell cycle-arrested cells. Proc Natl Acad Sci USA 109: 5693-5698.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 5693-5698
-
-
Ideue, T.1
Adachi, S.2
Naganuma, T.3
Tanigawa, A.4
Natsume, T.5
-
36
-
-
84868357628
-
Analysis of interferon-beta mRNA stability control after poly(I:C) stimulation using RNA metabolic labeling by ethynyluridine
-
Abe K, Ishigami T, Shyu AB, Ohno S, Umemura S, et al. (2012) Analysis of interferon-beta mRNA stability control after poly(I:C) stimulation using RNA metabolic labeling by ethynyluridine. Biochem Biophys Res Commun 428: 44-49.
-
(2012)
Biochem Biophys Res Commun
, vol.428
, pp. 44-49
-
-
Abe, K.1
Ishigami, T.2
Shyu, A.B.3
Ohno, S.4
Umemura, S.5
-
37
-
-
84982292404
-
Stability of MALAT-1, a nuclear long non-coding RNA in mammalian cells, varies in various cancer cell
-
Tani H, Nakamura Y, Ijiri K, Akimitsu N, (2010) Stability of MALAT-1, a nuclear long non-coding RNA in mammalian cells, varies in various cancer cell. Drug Discov Ther 4: 235-239.
-
(2010)
Drug Discov Ther
, vol.4
, pp. 235-239
-
-
Tani, H.1
Nakamura, Y.2
Ijiri, K.3
Akimitsu, N.4
-
38
-
-
77956882723
-
A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
-
Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, et al. (2010) A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. EMBO J 29: 3082-3093.
-
(2010)
EMBO J
, vol.29
, pp. 3082-3093
-
-
Bernard, D.1
Prasanth, K.V.2
Tripathi, V.3
Colasse, S.4
Nakamura, T.5
-
39
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, et al. (2010) The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 39: 925-938.
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
-
40
-
-
78249258719
-
MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes
-
Tano K, Mizuno R, Okada T, Rakwal R, Shibato J, et al. (2010) MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes. FEBS Lett 584: 4575-4580.
-
(2010)
FEBS Lett
, vol.584
, pp. 4575-4580
-
-
Tano, K.1
Mizuno, R.2
Okada, T.3
Rakwal, R.4
Shibato, J.5
-
41
-
-
84858630963
-
Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles
-
Miyagawa R, Tano K, Mizuno R, Nakamura Y, Ijiri K, et al. (2012) Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles. RNA 18: 738-751.
-
(2012)
RNA
, vol.18
, pp. 738-751
-
-
Miyagawa, R.1
Tano, K.2
Mizuno, R.3
Nakamura, Y.4
Ijiri, K.5
-
42
-
-
0033082995
-
IAP family proteins--suppressors of apoptosis
-
Deveraux QL, Reed JC, (1999) IAP family proteins--suppressors of apoptosis. Genes Dev 13: 239-252.
-
(1999)
Genes Dev
, vol.13
, pp. 239-252
-
-
Deveraux, Q.L.1
Reed, J.C.2
-
43
-
-
0035907309
-
Glucocorticoid receptor-mediated protection from apoptosis is associated with induction of the serine/threonine survival kinase gene, sgk-1
-
Mikosz CA, Brickley DR, Sharkey MS, Moran TW, Conzen SD, (2001) Glucocorticoid receptor-mediated protection from apoptosis is associated with induction of the serine/threonine survival kinase gene, sgk-1. J Biol Chem 276: 16649-16654.
-
(2001)
J Biol Chem
, vol.276
, pp. 16649-16654
-
-
Mikosz, C.A.1
Brickley, D.R.2
Sharkey, M.S.3
Moran, T.W.4
Conzen, S.D.5
-
44
-
-
0034674737
-
Involvement of two NF-kappa B binding elements in tumor necrosis factor alpha -, CD40-, and epstein-barr virus latent membrane protein 1-mediated induction of the cellular inhibitor of apoptosis protein 2 gene
-
Hong SY, Yoon WH, Park JH, Kang SG, Ahn JH, et al. (2000) Involvement of two NF-kappa B binding elements in tumor necrosis factor alpha-, CD40-, and epstein-barr virus latent membrane protein 1-mediated induction of the cellular inhibitor of apoptosis protein 2 gene. J Biol Chem 275: 18022-18028.
-
(2000)
J Biol Chem
, vol.275
, pp. 18022-18028
-
-
Hong, S.Y.1
Yoon, W.H.2
Park, J.H.3
Kang, S.G.4
Ahn, J.H.5
-
45
-
-
0036773286
-
Dexamethasone and tumor necrosis factor-alpha act together to induce the cellular inhibitor of apoptosis-2 gene and prevent apoptosis in a variety of cell types
-
Webster JC, Huber RM, Hanson RL, Collier PM, Haws TF, et al. (2002) Dexamethasone and tumor necrosis factor-alpha act together to induce the cellular inhibitor of apoptosis-2 gene and prevent apoptosis in a variety of cell types. Endocrinology 143: 3866-3874.
-
(2002)
Endocrinology
, vol.143
, pp. 3866-3874
-
-
Webster, J.C.1
Huber, R.M.2
Hanson, R.L.3
Collier, P.M.4
Haws, T.F.5
-
46
-
-
0036838943
-
Glucocorticoids stimulate human sgk1 gene expression by activation of a GRE in its 5′-flanking region
-
Itani OA, Liu KZ, Cornish KL, Campbell JR, Thomas CP, (2002) Glucocorticoids stimulate human sgk1 gene expression by activation of a GRE in its 5′-flanking region. Am J Physiol Endocrinol Metab 283: E971-979.
-
(2002)
Am J Physiol Endocrinol Metab
, vol.283
-
-
Itani, O.A.1
Liu, K.Z.2
Cornish, K.L.3
Campbell, J.R.4
Thomas, C.P.5
-
47
-
-
27644592503
-
Gene expression profiling of potential peroxisome proliferator-activated receptor (PPAR) target genes in human hepatoblastoma cell lines inducibly expressing different PPAR isoforms
-
Tachibana K, Kobayashi Y, Tanaka T, Tagami M, Sugiyama A, et al. (2005) Gene expression profiling of potential peroxisome proliferator-activated receptor (PPAR) target genes in human hepatoblastoma cell lines inducibly expressing different PPAR isoforms. Nucl Recept 3: 3.
-
(2005)
Nucl Recept
, vol.3
, pp. 3
-
-
Tachibana, K.1
Kobayashi, Y.2
Tanaka, T.3
Tagami, M.4
Sugiyama, A.5
-
48
-
-
0035038083
-
Evidence that phosphorylation of human Upfl protein varies with intracellular location and is mediated by a wortmannin-sensitive and rapamycin-sensitive PI 3-kinase-related kinase signaling pathway
-
Pal M, Ishigaki Y, Nagy E, Maquat LE, (2001) Evidence that phosphorylation of human Upfl protein varies with intracellular location and is mediated by a wortmannin-sensitive and rapamycin-sensitive PI 3-kinase-related kinase signaling pathway. RNA 7: 5-15.
-
(2001)
RNA
, vol.7
, pp. 5-15
-
-
Pal, M.1
Ishigaki, Y.2
Nagy, E.3
Maquat, L.E.4
-
49
-
-
33746226751
-
Physiologic substrates and functions for mammalian NMD
-
Sharifi NA, Dietz HC, (2006) Physiologic substrates and functions for mammalian NMD. Nonsense-Mediated mRNA Decay. 2 97-109: 2006.
-
(2006)
Nonsense-Mediated mRNA Decay
, vol.2
, pp. 97-109
-
-
Sharifi, N.A.1
Dietz, H.C.2
-
50
-
-
44349167189
-
Hypoxic inhibition of nonsense-mediated RNA decay regulates gene expression and the integrated stress response
-
Gardner LB, (2008) Hypoxic inhibition of nonsense-mediated RNA decay regulates gene expression and the integrated stress response. Mol Cell Biol 28: 3729-3741.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 3729-3741
-
-
Gardner, L.B.1
-
51
-
-
47749096350
-
Hypoxic regulation of mRNA expression
-
Gardner LB, Corn PG, (2008) Hypoxic regulation of mRNA expression. Cell Cycle 7: 1916-1924.
-
(2008)
Cell Cycle
, vol.7
, pp. 1916-1924
-
-
Gardner, L.B.1
Corn, P.G.2
-
52
-
-
66449089824
-
7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor
-
Diribarne G, Bensaude O, (2009) 7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor. RNA Biol 6: 122-128.
-
(2009)
RNA Biol
, vol.6
, pp. 122-128
-
-
Diribarne, G.1
Bensaude, O.2
-
53
-
-
84857921549
-
7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription
-
Peterlin BM, Brogie JE, Price DH, (2012) 7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription. Wiley Interdiscip Rev RNA 3: 92-103.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, pp. 92-103
-
-
Peterlin, B.M.1
Brogie, J.E.2
Price, D.H.3
-
54
-
-
80053576647
-
Steroid Receptor RNA Activator - A nuclear receptor coregulator with multiple partners: Insights and challenges
-
Colley SM, Leedman PJ, (2011) Steroid Receptor RNA Activator- A nuclear receptor coregulator with multiple partners: Insights and challenges. Biochimie 93: 1966-1972.
-
(2011)
Biochimie
, vol.93
, pp. 1966-1972
-
-
Colley, S.M.1
Leedman, P.J.2
-
55
-
-
80053572392
-
Steroid Receptor RNA Activator bi-faceted genetic system: Heads or Tails?
-
Cooper C, Vincett D, Yan Y, Hamedani MK, Myal Y, et al. (2011) Steroid Receptor RNA Activator bi-faceted genetic system: Heads or Tails? Biochimie 93: 1973-1980.
-
(2011)
Biochimie
, vol.93
, pp. 1973-1980
-
-
Cooper, C.1
Vincett, D.2
Yan, Y.3
Hamedani, M.K.4
Myal, Y.5
-
56
-
-
0035891288
-
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
-
Nguyen VT, Kiss T, Michels AA, Bensaude O, (2001) 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature 414: 322-325.
-
(2001)
Nature
, vol.414
, pp. 322-325
-
-
Nguyen, V.T.1
Kiss, T.2
Michels, A.A.3
Bensaude, O.4
-
57
-
-
0035891271
-
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription
-
Yang Z, Zhu Q, Luo K, Zhou Q, (2001) The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature 414: 317-322.
-
(2001)
Nature
, vol.414
, pp. 317-322
-
-
Yang, Z.1
Zhu, Q.2
Luo, K.3
Zhou, Q.4
-
58
-
-
70450285249
-
Evolution of 7SK RNA and its protein partners in metazoa
-
Marz M, Donath A, Verstraete N, Nguyen VT, Stadler PF, et al. (2009) Evolution of 7SK RNA and its protein partners in metazoa. Mol Biol Evol 26: 2821-2830.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2821-2830
-
-
Marz, M.1
Donath, A.2
Verstraete, N.3
Nguyen, V.T.4
Stadler, P.F.5
-
59
-
-
3342967685
-
Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor
-
Michels AA, Fraldi A, Li Q, Adamson TE, Bonnet F, et al. (2004) Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor. EMBO J 23: 2608-2619.
-
(2004)
EMBO J
, vol.23
, pp. 2608-2619
-
-
Michels, A.A.1
Fraldi, A.2
Li, Q.3
Adamson, T.E.4
Bonnet, F.5
-
60
-
-
30644478471
-
Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding
-
Egloff S, Van Herreweghe E, Kiss T, (2006) Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding. Mol Cell Biol 26: 630-642.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 630-642
-
-
Egloff, S.1
Van Herreweghe, E.2
Kiss, T.3
-
61
-
-
34547850648
-
Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR
-
Sedore SC, Byers SA, Biglione S, Price JP, Maury WJ, et al. (2007) Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR. Nucleic Acids Res 35: 4347-4358.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4347-4358
-
-
Sedore, S.C.1
Byers, S.A.2
Biglione, S.3
Price, J.P.4
Maury, W.J.5
-
62
-
-
2342423586
-
Phosphorylation of RNA polymerase II in cardiac hypertrophy: cell enlargement signals converge on cyclin T/Cdk9
-
Kulkarni PA, Sano M, Schneider MD, (2004) Phosphorylation of RNA polymerase II in cardiac hypertrophy: cell enlargement signals converge on cyclin T/Cdk9. Recent Prog Horm Res 59: 125-139.
-
(2004)
Recent Prog Horm Res
, vol.59
, pp. 125-139
-
-
Kulkarni, P.A.1
Sano, M.2
Schneider, M.D.3
-
63
-
-
34548016988
-
Inhibition of HIV-1 replication by P-TEFb inhibitors DRB, seliciclib and flavopiridol correlates with release of free P-TEFb from the large, inactive form of the complex
-
Biglione S, Byers SA, Price JP, Nguyen VT, Bensaude O, et al. (2007) Inhibition of HIV-1 replication by P-TEFb inhibitors DRB, seliciclib and flavopiridol correlates with release of free P-TEFb from the large, inactive form of the complex. Retrovirology 4: 47.
-
(2007)
Retrovirology
, vol.4
, pp. 47
-
-
Biglione, S.1
Byers, S.A.2
Price, J.P.3
Nguyen, V.T.4
Bensaude, O.5
-
64
-
-
0037058999
-
Distinct RNA motifs are important for coactivation of steroid hormone receptors by steroid receptor RNA activator (SRA)
-
Lanz RB, Razani B, Goldberg AD, O'Malley BW, (2002) Distinct RNA motifs are important for coactivation of steroid hormone receptors by steroid receptor RNA activator (SRA). Proc Natl Acad Sci USA 99: 16081-16086.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16081-16086
-
-
Lanz, R.B.1
Razani, B.2
Goldberg, A.D.3
O'Malley, B.W.4
-
65
-
-
0041977096
-
Ligand-independent coactivation of ERalpha AF-1 by steroid receptor RNA activator (SRA) via MAPK activation
-
Deblois G, Giguère V, (2003) Ligand-independent coactivation of ERalpha AF-1 by steroid receptor RNA activator (SRA) via MAPK activation. J Steroid Biochem Mol Biol 85: 123-131.
-
(2003)
J Steroid Biochem Mol Biol
, vol.85
, pp. 123-131
-
-
Deblois, G.1
Giguère, V.2
-
66
-
-
0037271634
-
A novel steroid receptor co-activator protein (SRAP) as an alternative form of steroid receptor RNA-activator gene: expression in prostate cancer cells and enhancement of androgen receptor activity
-
Kawashima H, Takano H, Sugita S, Takahara Y, Sugimura K, et al. (2003) A novel steroid receptor co-activator protein (SRAP) as an alternative form of steroid receptor RNA-activator gene: expression in prostate cancer cells and enhancement of androgen receptor activity. Biochem J 369: 163-171.
-
(2003)
Biochem J
, vol.369
, pp. 163-171
-
-
Kawashima, H.1
Takano, H.2
Sugita, S.3
Takahara, Y.4
Sugimura, K.5
-
67
-
-
4344573761
-
Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator
-
Zhao X, Patton JR, Davis SL, Florence B, Ames SJ, et al. (2004) Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator. Mol Cell 15: 549-558.
-
(2004)
Mol Cell
, vol.15
, pp. 549-558
-
-
Zhao, X.1
Patton, J.R.2
Davis, S.L.3
Florence, B.4
Ames, S.J.5
-
68
-
-
33744541544
-
SLIRP, a small SRA binding protein, is a nuclear receptor corepressor
-
Hatchell EC, Colley SM, Beveridge DJ, Epis MR, Stuart LM, et al. (2006) SLIRP, a small SRA binding protein, is a nuclear receptor corepressor. Mol Cell 22: 657-668.
-
(2006)
Mol Cell
, vol.22
, pp. 657-668
-
-
Hatchell, E.C.1
Colley, S.M.2
Beveridge, D.J.3
Epis, M.R.4
Stuart, L.M.5
-
69
-
-
33749125424
-
The RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation
-
Caretti G, Schiltz RL, Dilworth FJ, Di Padova M, Zhao P, et al. (2006) The RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation. Dev Cell 11: 547-560.
-
(2006)
Dev Cell
, vol.11
, pp. 547-560
-
-
Caretti, G.1
Schiltz, R.L.2
Dilworth, F.J.3
Di Padova, M.4
Zhao, P.5
-
70
-
-
78649401946
-
Dax1 up-regulates Oct4 expression in mouse embryonic stem cells via LRH-1 and SRA
-
Kelly VR, Xu B, Kuick R, Koenig RJ, Hammer GD, (2010) Dax1 up-regulates Oct4 expression in mouse embryonic stem cells via LRH-1 and SRA. Mol Endocrinol 24: 2281-2291.
-
(2010)
Mol Endocrinol
, vol.24
, pp. 2281-2291
-
-
Kelly, V.R.1
Xu, B.2
Kuick, R.3
Koenig, R.J.4
Hammer, G.D.5
-
71
-
-
33745676295
-
Expression and function of human steroid receptor RNA activator in prostate cancer cells: role of endogenous hSRA protein in androgen receptor-mediated transcription
-
Kurisu T, Tanaka T, Ishii J, Matsumura K, Sugimura K, et al. (2006) Expression and function of human steroid receptor RNA activator in prostate cancer cells: role of endogenous hSRA protein in androgen receptor-mediated transcription. Prostate Cancer Prostatic Dis 9: 173-178.
-
(2006)
Prostate Cancer Prostatic Dis
, vol.9
, pp. 173-178
-
-
Kurisu, T.1
Tanaka, T.2
Ishii, J.3
Matsumura, K.4
Sugimura, K.5
-
72
-
-
0035339146
-
Sharp, an inducible cofactor that integrates nuclear receptor repression and activation
-
Shi Y, Downes M, Xie W, Kao HY, Ordentlich P, et al. (2001) Sharp, an inducible cofactor that integrates nuclear receptor repression and activation. Genes Dev 15: 1140-1151.
-
(2001)
Genes Dev
, vol.15
, pp. 1140-1151
-
-
Shi, Y.1
Downes, M.2
Xie, W.3
Kao, H.Y.4
Ordentlich, P.5
-
73
-
-
0037423753
-
Identification of new human coding steroid receptor RNA activator isoforms
-
Emberley E, Huang GJ, Hamedani MK, Czosnek A, Ali D, et al. (2003) Identification of new human coding steroid receptor RNA activator isoforms. Biochem Biophys Res Commun 301: 509-515.
-
(2003)
Biochem Biophys Res Commun
, vol.301
, pp. 509-515
-
-
Emberley, E.1
Huang, G.J.2
Hamedani, M.K.3
Czosnek, A.4
Ali, D.5
-
74
-
-
84865379361
-
LincRNA-p21 suppresses target mRNA translation
-
Yoon JH, Abdelmohsen K, Srikantan S, Yang X, Martindale JL, et al. (2012) LincRNA-p21 suppresses target mRNA translation. Mol Cell 47: 648-655.
-
(2012)
Mol Cell
, vol.47
, pp. 648-655
-
-
Yoon, J.H.1
Abdelmohsen, K.2
Srikantan, S.3
Yang, X.4
Martindale, J.L.5
-
75
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, et al. (2010) A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 142: 409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
-
76
-
-
44649197671
-
New twists in X-chromosome inactivation
-
Erwin JA, Lee JT, (2008) New twists in X-chromosome inactivation. Curr Opin Cell Biol 20: 349-355.
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 349-355
-
-
Erwin, J.A.1
Lee, J.T.2
-
77
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, et al. (2007) Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129: 1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
-
78
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, et al. (2010) Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464: 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
-
79
-
-
77953096072
-
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
-
Yap KL, Li S, Muñoz-Cabello AM, Raguz S, Zeng L, et al. (2010) Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Mol Cell 38: 662-674.
-
(2010)
Mol Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Muñoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
-
80
-
-
79955468280
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
-
Kotake Y, Nakagawa T, Kitagawa K, Suzuki S, Liu N, et al. (2011) Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene 30: 1956-1962.
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
-
81
-
-
62449319486
-
MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
-
Sasaki YT, Ideue T, Sano M, Mituyama T, Hirose T, (2009) MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. Proc Natl Acad Sci USA 106: 2525-2530.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 2525-2530
-
-
Sasaki, Y.T.1
Ideue, T.2
Sano, M.3
Mituyama, T.4
Hirose, T.5
-
82
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
Clemson CM, Hutchinson JN, Sara SA, Ensminger AW, Fox AH, et al. (2009) An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol Cell 33: 717-726.
-
(2009)
Mol Cell
, vol.33
, pp. 717-726
-
-
Clemson, C.M.1
Hutchinson, J.N.2
Sara, S.A.3
Ensminger, A.W.4
Fox, A.H.5
-
83
-
-
61849113891
-
MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
Sunwoo H, Dinger ME, Wilusz JE, Amaral PP, Mattick JS, et al. (2009) MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res 19: 347-359.
-
(2009)
Genome Res
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
Dinger, M.E.2
Wilusz, J.E.3
Amaral, P.P.4
Mattick, J.S.5
-
84
-
-
79955506825
-
Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice
-
Nakagawa S, Naganuma T, Shioi G, Hirose T, (2011) Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice. J Cell Biol 193: 31-39.
-
(2011)
J Cell Biol
, vol.193
, pp. 31-39
-
-
Nakagawa, S.1
Naganuma, T.2
Shioi, G.3
Hirose, T.4
|