-
1
-
-
0010756724
-
Brenner S. [On the regulation of DNA synthesis in bacteria: The hypothesis of the replicon]
-
Jacob F, Brenner S. [On the regulation of DNA synthesis in bacteria: the hypothesis of the replicon]. C R Hebd Seances Acad Sci. 1963;256:298-300
-
(1963)
C R Hebd Seances Acad Sci
, vol.256
, pp. 298-300
-
-
Jacob, F.1
-
2
-
-
77957168933
-
Eukaryotic DNA replication origins: Many choices for appropriate answers
-
Mechali M. Eukaryotic DNA replication origins: many choices for appropriate answers. Nat Rev Mol Cell Biol. 2010;11:728-738
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 728-738
-
-
Mechali, M.1
-
3
-
-
0035997368
-
DNA replication in eukaryotic cells
-
Bell SP, Dutta A. DNA replication in eukaryotic cells. Annu Rev Biochem. 2002;71:333-374
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 333-374
-
-
Bell, S.P.1
Dutta, A.2
-
4
-
-
0033472810
-
Replication origins of mammalian chromosomes: The happy few
-
Todorovic V, Falaschi A, Giacca M. Replication origins of mammalian chromosomes: the happy few. Front Biosci. 1999;4:D859-D868
-
(1999)
Front Biosci
, vol.4
-
-
Todorovic, V.1
Falaschi, A.2
Giacca, M.3
-
5
-
-
30444436433
-
Transcription factors and DNA replication origin selection
-
Kohzaki H, Murakami Y. Transcription factors and DNA replication origin selection. Bioessays. 2005;27:1107-1116
-
(2005)
Bioessays
, vol.27
, pp. 1107-1116
-
-
Kohzaki, H.1
Murakami, Y.2
-
6
-
-
0033043743
-
Replication origins in metazoan chromosomes: Fact or fiction?
-
DePamphilis ML. Replication origins in metazoan chromosomes: fact or fiction? Bioessays. 1999;21:5-16
-
(1999)
Bioessays
, vol.21
, pp. 5-16
-
-
Depamphilis, M.L.1
-
7
-
-
0031056052
-
CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replication
-
Zou L, Mitchell J, Stillman B. CDC45, a novel yeast gene that functions with the origin recognition complex and Mcm proteins in initiation of DNA replication. Mol Cell Biol. 1997;17:553-563
-
(1997)
Mol Cell Biol
, vol.17
, pp. 553-563
-
-
Zou, L.1
Mitchell, J.2
Stillman, B.3
-
8
-
-
0034671935
-
Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts
-
Walter JC. Evidence for sequential action of cdc7 and cdk2 protein kinases during initiation of DNA replication in Xenopus egg extracts. J Biol Chem. 2000;275:39773-39778
-
(2000)
J Biol Chem
, vol.275
, pp. 39773-39778
-
-
Walter, J.C.1
-
9
-
-
0033569906
-
Mammalian Cdc7-Dbf4 protein kinase complex is essential for initiation of DNA replication
-
Jiang W, McDonald D, Hope TJ, Hunter T. Mammalian Cdc7-Dbf4 protein kinase complex is essential for initiation of DNA replication. EMBO J. 1999;18:5703-5713
-
(1999)
EMBO J
, vol.18
, pp. 5703-5713
-
-
Jiang, W.1
McDonald, D.2
Hope, T.J.3
Hunter, T.4
-
10
-
-
39549110810
-
Preventing DNA over-replication: A Cdk perspective
-
Porter AC. Preventing DNA over-replication: a Cdk perspective. Cell Div. 2008;3:3
-
(2008)
Cell Div
, vol.3
, pp. 3
-
-
Porter, A.C.1
-
11
-
-
33947127410
-
Strength in numbers: Preventing rereplication via multiple mechanisms in eukaryotic cells
-
Arias EE, Walter JC. Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells. Genes Dev. 2007;21:497-518
-
(2007)
Genes Dev
, vol.21
, pp. 497-518
-
-
Arias, E.E.1
Walter, J.C.2
-
13
-
-
40549108563
-
Cell cycle regulation of DNA replication
-
Sclafani RA, Holzen TM. Cell cycle regulation of DNA replication. Annu Rev Genet. 2007;41: 237-280
-
(2007)
Annu Rev Genet
, vol.41
, pp. 237-280
-
-
Sclafani, R.A.1
Holzen, T.M.2
-
14
-
-
26244431903
-
Right place, right time, and only once: Replication initiation in metazoans
-
Machida YJ, Hamlin JL, Dutta A. Right place, right time, and only once: replication initiation in metazoans. Cell. 2005;123:13-24
-
(2005)
Cell
, vol.123
, pp. 13-24
-
-
Machida, Y.J.1
Hamlin, J.L.2
Dutta, A.3
-
15
-
-
18344384065
-
DNA replication and progression through S phase
-
Takeda DY, Dutta A. DNA replication and progression through S phase. Oncogene. 2005;24:2827-2843
-
(2005)
Oncogene
, vol.24
, pp. 2827-2843
-
-
Takeda, D.Y.1
Dutta, A.2
-
16
-
-
0035963372
-
Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms
-
Nguyen VQ, Co C, Li JJ. Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms. Nature. 2001;411:1068-1073
-
(2001)
Nature
, vol.411
, pp. 1068-1073
-
-
Nguyen, V.Q.1
Co, C.2
Li, J.J.3
-
17
-
-
0029807797
-
Once and only once upon a time: Specifying and regulating origins of DNA replication in eukaryotic cells
-
Diffley JF. Once and only once upon a time: specifying and regulating origins of DNA replication in eukaryotic cells. Genes Dev. 1996;10:2819-2830
-
(1996)
Genes Dev
, vol.10
, pp. 2819-2830
-
-
Diffley, J.F.1
-
18
-
-
33745264366
-
The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks
-
Narayanan V, Mieczkowski PA, Kim HM, Petes TD, Lobachev KS. The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks. Cell. 2006;125:1283-1296
-
(2006)
Cell
, vol.125
, pp. 1283-1296
-
-
Narayanan, V.1
Mieczkowski, P.A.2
Kim, H.M.3
Petes, T.D.4
Lobachev, K.S.5
-
19
-
-
0035797383
-
The DNA replication checkpoint response stabilizes stalled replication forks
-
Lopes M, Cotta-Ramusino C, Pellicioli A, et al. The DNA replication checkpoint response stabilizes stalled replication forks. Nature. 2001;412:557-561
-
(2001)
Nature
, vol.412
, pp. 557-561
-
-
Lopes, M.1
Cotta-Ramusino, C.2
Pellicioli, A.3
-
20
-
-
0348047594
-
The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes
-
Ivessa AS, Lenzmeier BA, Bessler JB, Goudsouzian LK, Schnakenberg SL, Zakian VA. The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes. Mol Cell. 2003;12:1525-1536
-
(2003)
Mol Cell
, vol.12
, pp. 1525-1536
-
-
Ivessa, A.S.1
Lenzmeier, B.A.2
Bessler, J.B.3
Goudsouzian, L.K.4
Schnakenberg, S.L.5
Zakian, V.A.6
-
21
-
-
75749150810
-
Direct restart of a replication fork stalled by a head-on RNA polymerase
-
Pomerantz RT, O'Donnell M. Direct restart of a replication fork stalled by a head-on RNA polymerase. Science. 2010;327:590-592
-
(2010)
Science
, vol.327
, pp. 590-592
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
22
-
-
59249105978
-
A microhomology-mediated break-induced replication model for the origin of human copy number variation
-
e1000327
-
Hastings PJ, Ira G, Lupski JR. A microhomology-mediated break-induced replication model for the origin of human copy number variation. PLoS Genet. 2009;5:e1000327
-
(2009)
PLoS Genet
, vol.5
-
-
Hastings, P.J.1
Ira, G.2
Lupski, J.R.3
-
23
-
-
61549098717
-
Replication stress induces genome-wide copy number changes in human cells that resemble polymorphic and pathogenic variants
-
Arlt MF, Mulle JG, Schaibley VM, et al. Replication stress induces genome-wide copy number changes in human cells that resemble polymorphic and pathogenic variants. Am J Hum Genet. 2009;84:339-350
-
(2009)
Am J Hum Genet
, vol.84
, pp. 339-350
-
-
Arlt, M.F.1
Mulle, J.G.2
Schaibley, V.M.3
-
24
-
-
80054794827
-
Hydroxyurea induces de novo copy number variants in human cells
-
Arlt MF, Ozdemir AC, Birkeland SR, Wilson TE, Glover TW. Hydroxyurea induces de novo copy number variants in human cells. Proc Natl Acad Sci U S A. 2011;108:17360-17365
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 17360-17365
-
-
Arlt, M.F.1
Ozdemir, A.C.2
Birkeland, S.R.3
Wilson, T.E.4
Glover, T.W.5
-
25
-
-
0037567268
-
Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes
-
Zou L, Elledge SJ. Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes. Science. 2003;300:1542-1548
-
(2003)
Science
, vol.300
, pp. 1542-1548
-
-
Zou, L.1
Elledge, S.J.2
-
26
-
-
77649165394
-
Maintaining genome stability at the replication fork
-
Branzei D, Foiani M. Maintaining genome stability at the replication fork. Nat Rev Mol Cell Biol. 2010;11:208-219
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 208-219
-
-
Branzei, D.1
Foiani, M.2
-
27
-
-
0037178740
-
Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects
-
Sogo JM, Lopes M, Foiani M. Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science. 2002;297:599-602
-
(2002)
Science
, vol.297
, pp. 599-602
-
-
Sogo, J.M.1
Lopes, M.2
Foiani, M.3
-
29
-
-
69649094480
-
Isodicentric Y chromosomes and sex disorders as byproducts of homologous recombination that maintains palindromes
-
Lange J, Skaletsky H, van Daalen SK, et al. Isodicentric Y chromosomes and sex disorders as byproducts of homologous recombination that maintains palindromes. Cell. 2009;138:855-869
-
(2009)
Cell
, vol.138
, pp. 855-869
-
-
Lange, J.1
Skaletsky, H.2
van Daalen, S.K.3
-
30
-
-
39449096135
-
Genome instability: A mechanistic view of its causes and consequences
-
Aguilera A, Gomez-Gonzalez B. Genome instability: a mechanistic view of its causes and consequences. Nat Rev Genet. 2008;9:204-217
-
(2008)
Nat Rev Genet
, vol.9
, pp. 204-217
-
-
Aguilera, A.1
Gomez-Gonzalez, B.2
-
31
-
-
70549097977
-
The replication fork's five degrees of freedom, their failure and genome rearrangements
-
Weinert T, Kaochar S, Jones H, Paek A, Clark AJ. The replication fork's five degrees of freedom, their failure and genome rearrangements. Curr Opin Cell Biol. 2009;21:778-784
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 778-784
-
-
Weinert, T.1
Kaochar, S.2
Jones, H.3
Paek, A.4
Clark, A.J.5
-
32
-
-
0037178722
-
Maintenance of genome stability in Saccharomyces cerevisiae
-
Kolodner RD, Putnam CD, Myung K. Maintenance of genome stability in Saccharomyces cerevisiae. Science. 2002;297:552-557
-
(2002)
Science
, vol.297
, pp. 552-557
-
-
Kolodner, R.D.1
Putnam, C.D.2
Myung, K.3
-
33
-
-
33748333194
-
Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome
-
Sharp AJ, Hansen S, Selzer RR, et al. Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome. Nat Genet. 2006;38:1038-1042
-
(2006)
Nat Genet
, vol.38
, pp. 1038-1042
-
-
Sharp, A.J.1
Hansen, S.2
Selzer, R.R.3
-
34
-
-
37349109667
-
A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders
-
Lee JA, Carvalho CM, Lupski JR. A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders. Cell. 2007;131:1235-1247
-
(2007)
Cell
, vol.131
, pp. 1235-1247
-
-
Lee, J.A.1
Carvalho, C.M.2
Lupski, J.R.3
-
35
-
-
68649123353
-
Duplication hotspots, rare genomic disorders, and common disease
-
Mefford HC, Eichler EE. Duplication hotspots, rare genomic disorders, and common disease. Curr Opin Genet Dev. 2009;19:196-204
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 196-204
-
-
Mefford, H.C.1
Eichler, E.E.2
-
36
-
-
0038730929
-
A central role for DNA replication forks in checkpoint activation and response
-
Tercero JA, Longhese MP, Diffley JF. A central role for DNA replication forks in checkpoint activation and response. Mol Cell. 2003;11:1323-1336
-
(2003)
Mol Cell
, vol.11
, pp. 1323-1336
-
-
Tercero, J.A.1
Longhese, M.P.2
Diffley, J.F.3
-
37
-
-
0037264074
-
Genome rearrangements in mammalian evolution: Lessons from human and mouse genomes
-
Pevzner P, Tesler G. Genome rearrangements in mammalian evolution: lessons from human and mouse genomes. Genome Res. 2003;13:37-45
-
(2003)
Genome Res
, vol.13
, pp. 37-45
-
-
Pevzner, P.1
Tesler, G.2
-
38
-
-
66149120624
-
Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching
-
Carvalho CM, Zhang F, Liu P, et al. Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching. Hum Mol Genet. 2009;18:2188-2203
-
(2009)
Hum Mol Genet
, vol.18
, pp. 2188-2203
-
-
Carvalho, C.M.1
Zhang, F.2
Liu, P.3
-
39
-
-
33646490411
-
On the mechanism of gene amplification induced under stress in Escherichia coli
-
Slack A, Thornton PC, Magner DB, Rosenberg SM, Hastings PJ. On the mechanism of gene amplification induced under stress in Escherichia coli. PLoS Genet. 2006;2:e48
-
(2006)
PLoS Genet
, vol.2
-
-
Slack, A.1
Thornton, P.C.2
Magner, D.B.3
Rosenberg, S.M.4
Hastings, P.J.5
-
41
-
-
84855319060
-
Aberrant firing of replication origins potentially explains intragenic nonrecurrent rearrangements within genes, including the human DMD gene
-
Ankala A, Kohn JN, Hegde A, et al. Aberrant firing of replication origins potentially explains intragenic nonrecurrent rearrangements within genes, including the human DMD gene. Genome Res. 2012;22:25-34
-
(2012)
Genome Res
, vol.22
, pp. 25-34
-
-
Ankala, A.1
Kohn, J.N.2
Hegde, A.3
-
42
-
-
67649878596
-
The DNA replication FoSTeS/ MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans
-
Zhang F, Khajavi M, Connolly AM, Towne CF, Batish SD, Lupski JR. The DNA replication FoSTeS/ MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans. Nat Genet. 2009;41:849-853
-
(2009)
Nat Genet
, vol.41
, pp. 849-853
-
-
Zhang, F.1
Khajavi, M.2
Connolly, A.M.3
Towne, C.F.4
Batish, S.D.5
Lupski, J.R.6
-
43
-
-
77956849313
-
Genomic rearrangements in inherited disease and cancer
-
Chen JM, Cooper DN, Ferec C, Kehrer-Sawatzki H, Patrinos GP. Genomic rearrangements in inherited disease and cancer. Semin Cancer Biol. 2010;20:222-233
-
(2010)
Semin Cancer Biol
, vol.20
, pp. 222-233
-
-
Chen, J.M.1
Cooper, D.N.2
Ferec, C.3
Kehrer-Sawatzki, H.4
Patrinos, G.P.5
-
44
-
-
0026463867
-
Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF
-
Hwang DS, Kornberg A. Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. J Biol Chem. 1992;267:23083-23086
-
(1992)
J Biol Chem
, vol.267
, pp. 23083-23086
-
-
Hwang, D.S.1
Kornberg, A.2
-
45
-
-
0035812742
-
Making sense of eukaryotic DNA replication origins
-
Gilbert DM. Making sense of eukaryotic DNA replication origins. Science. 2001;294:96-100
-
(2001)
Science
, vol.294
, pp. 96-100
-
-
Gilbert, D.M.1
-
46
-
-
33746860263
-
Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling
-
Erzberger JP, Mott ML, Berger JM. Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling. Nat Struct Mol Biol. 2006;13:676-683
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 676-683
-
-
Erzberger, J.P.1
Mott, M.L.2
Berger, J.M.3
-
48
-
-
33645055663
-
Replication-associated gene dosage effects shape the genomes of fastgrowing bacteria but only for transcription and translation genes
-
Couturier E, Rocha EP. Replication-associated gene dosage effects shape the genomes of fastgrowing bacteria but only for transcription and translation genes. Mol Microbiol. 2006;59:1506-1518
-
(2006)
Mol Microbiol
, vol.59
, pp. 1506-1518
-
-
Couturier, E.1
Rocha, E.P.2
-
49
-
-
0042667165
-
Essentiality, not expressiveness, drives gene-strand bias in bacteria
-
Rocha EP, Danchin A. Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat Genet. 2003;34:377-378
-
(2003)
Nat Genet
, vol.34
, pp. 377-378
-
-
Rocha, E.P.1
Danchin, A.2
-
50
-
-
0022413030
-
Characterization and properties of very large inversions of the E. Coli Chromosome Along the Origin-to-terminus Axis
-
Louarn JM, Bouche JP, Legendre F, Louarn J, Patte J. Characterization and properties of very large inversions of the E. coli chromosome along the origin-to-terminus axis. Mol Gen Genet. 1985;201:467-476
-
(1985)
Mol Gen Genet
, vol.201
, pp. 467-476
-
-
Louarn, J.M.1
Bouche, J.P.2
Legendre, F.3
Louarn, J.4
Patte, J.5
-
51
-
-
0030924440
-
The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence
-
Theis JF, Newlon CS. The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence. Proc Natl Acad Sci U S A. 1997;94:10786-10791
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 10786-10791
-
-
Theis, J.F.1
Newlon, C.S.2
-
52
-
-
0019052220
-
segments capable of autonomous replication in yeast
-
Stinchcomb DT, Thomas M, Kelly J, Selker E, Davis RW. Eukaryotic DNA segments capable of autonomous replication in yeast. Proc Natl Acad Sci U S A. 1980;77:4559-4563
-
(1980)
Proc Natl Acad Sci U S A
, vol.77
, pp. 4559-4563
-
-
Stinchcomb, D.T.1
Thomas, M.2
Kelly, J.3
Selker, E.4
Davis, R.W.5
Eukaryotic, D.N.A.6
-
53
-
-
0346484153
-
Autonomously replicating sequences in Saccharomyces cerevisiae
-
Chan CS, Tye BK. Autonomously replicating sequences in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1980;77:6329-6333
-
(1980)
Proc Natl Acad Sci U S A
, vol.77
, pp. 6329-6333
-
-
Chan, C.S.1
Tye, B.K.2
-
54
-
-
33746101049
-
Genome-wide identification of replication origins in yeast by comparative genomics
-
Nieduszynski CA, Knox Y, Donaldson AD. Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev. 2006;20:1874-1879
-
(2006)
Genes Dev
, vol.20
, pp. 1874-1879
-
-
Nieduszynski, C.A.1
Knox, Y.2
Donaldson, A.D.3
-
55
-
-
78049415820
-
Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure
-
Berbenetz NM, Nislow C, Brown GW. Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure. PLoS Genet. 2010;6:e1001092
-
(2010)
PLoS Genet
, vol.6
-
-
Berbenetz, N.M.1
Nislow, C.2
Brown, G.W.3
-
56
-
-
77950962157
-
Conserved nucleosome positioning defines replication origins
-
Eaton ML, Galani K, Kang S, Bell SP, MacAlpine DM. Conserved nucleosome positioning defines replication origins. Genes Dev. 2010;24:748-753
-
(2010)
Genes Dev
, vol.24
, pp. 748-753
-
-
Eaton, M.L.1
Galani, K.2
Kang, S.3
Bell, S.P.4
Macalpine, D.M.5
-
57
-
-
0028346546
-
Initiation preference at a yeast origin of replication
-
Brewer BJ, Fangman WL. Initiation preference at a yeast origin of replication. Proc Natl Acad Sci U S A. 1994;91:3418-3422
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 3418-3422
-
-
Brewer, B.J.1
Fangman, W.L.2
-
58
-
-
0345369732
-
Chromatin remodeling and activation of chromosomal DNA replication by an acidic transcriptional activation domain from BRCA1
-
Hu YF, Hao ZL, Li R. Chromatin remodeling and activation of chromosomal DNA replication by an acidic transcriptional activation domain from BRCA1. Genes Dev. 1999;13:637-642
-
(1999)
Genes Dev
, vol.13
, pp. 637-642
-
-
Hu, Y.F.1
Hao, Z.L.2
Li, R.3
-
59
-
-
4143082817
-
Specification of a DNA replication origin by a transcription complex
-
Danis E, Brodolin K, Menut S, Maiorano D, Girard-Reydet C, Mechali M. Specification of a DNA replication origin by a transcription complex. Nat Cell Biol. 2004;6:721-730
-
(2004)
Nat Cell Biol
, vol.6
, pp. 721-730
-
-
Danis, E.1
Brodolin, K.2
Menut, S.3
Maiorano, D.4
Girard-Reydet, C.5
Mechali, M.6
-
60
-
-
0026508417
-
A yeast chromosomal origin of DNA replication defined by multiple functional elements
-
Marahrens Y, Stillman B. A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science. 1992;255:817-823
-
(1992)
Science
, vol.255
, pp. 817-823
-
-
Marahrens, Y.1
Stillman, B.2
-
61
-
-
0033556028
-
Telomeric chromatin modulates replication timing near chromosome ends
-
Stevenson JB, Gottschling DE. Telomeric chromatin modulates replication timing near chromosome ends. Genes Dev. 1999;13:146-151
-
(1999)
Genes Dev
, vol.13
, pp. 146-151
-
-
Stevenson, J.B.1
Gottschling, D.E.2
-
63
-
-
0346873031
-
Genomewide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe
-
Segurado M, de Luis A, Antequera F. Genomewide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep. 2003;4:1048-1053
-
(2003)
EMBO Rep
, vol.4
, pp. 1048-1053
-
-
Segurado, M.1
de Luis, A.2
Antequera, F.3
-
64
-
-
12244265093
-
DNA replication origins in the Schizosaccharomyces pombe genome
-
Dai J, Chuang RY, Kelly TJ. DNA replication origins in the Schizosaccharomyces pombe genome. Proc Natl Acad Sci U S A. 2005;102:337-342
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 337-342
-
-
Dai, J.1
Chuang, R.Y.2
Kelly, T.J.3
-
65
-
-
0033055057
-
The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks
-
Chuang RY, Kelly TJ. The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks. Proc Natl Acad Sci U S A. 1999;96:2656-2661
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 2656-2661
-
-
Chuang, R.Y.1
Kelly, T.J.2
-
66
-
-
0029026719
-
Poly(dA:DT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
-
Iyer V, Struhl K. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J. 1995;14: 2570-2579
-
(1995)
EMBO J
, vol.14
, pp. 2570-2579
-
-
Iyer, V.1
Struhl, K.2
-
67
-
-
0022230224
-
DNA bending and its relation to nucleosome positioning
-
Drew HR, Travers AA. DNA bending and its relation to nucleosome positioning. J Mol Biol. 1985;186:773-790
-
(1985)
J Mol Biol
, vol.186
, pp. 773-790
-
-
Drew, H.R.1
Travers, A.A.2
-
68
-
-
84859927986
-
Genomewide identification and characterization of replication origins by deep sequencing
-
Xu J, Yanagisawa Y, Tsankov AM, et al. Genomewide identification and characterization of replication origins by deep sequencing. Genome Biol. 2012;13:R27
-
(2012)
Genome Biol
, vol.13
-
-
Xu, J.1
Yanagisawa, Y.2
Tsankov, A.M.3
-
69
-
-
80555156654
-
Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization
-
Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ. Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res. 2011;21:1851-1862
-
(2011)
Genome Res
, vol.21
, pp. 1851-1862
-
-
Tsankov, A.1
Yanagisawa, Y.2
Rhind, N.3
Regev, A.4
Rando, O.J.5
-
70
-
-
0018952783
-
Regulated replication of DNA microinjected into eggs of Xenopus laevis
-
Harland RM, Laskey RA. Regulated replication of DNA microinjected into eggs of Xenopus laevis. Cell. 1980;21:761-771
-
(1980)
Cell
, vol.21
, pp. 761-771
-
-
Harland, R.M.1
Laskey, R.A.2
-
72
-
-
0019455680
-
Replication origins in the eucaryotic chromosome
-
Laskey RA, Harland RM. Replication origins in the eucaryotic chromosome. Cell. 1981;24:283-284
-
(1981)
Cell
, vol.24
, pp. 283-284
-
-
Laskey, R.A.1
Harland, R.M.2
-
73
-
-
50249154897
-
In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences
-
Stanojcic S, Lemaitre JM, Brodolin K, Danis E, Mechali M. In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences. Mol Cell Biol. 2008;28:5265-5274
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5265-5274
-
-
Stanojcic, S.1
Lemaitre, J.M.2
Brodolin, K.3
Danis, E.4
Mechali, M.5
-
74
-
-
0021714731
-
Lack of specific sequence requirement for DNA replication in Xenopus eggs compared with high sequence specificity in yeast
-
Mechali M, Kearsey S. Lack of specific sequence requirement for DNA replication in Xenopus eggs compared with high sequence specificity in yeast. Cell. 1984;38:55-64
-
(1984)
Cell
, vol.38
, pp. 55-64
-
-
Mechali, M.1
Kearsey, S.2
-
75
-
-
0014963612
-
The cell cycle of an established line of Drosophila melanogaster cells in vitro
-
Dolfini S, Courgeon AM, Tiepolo L. The cell cycle of an established line of Drosophila melanogaster cells in vitro. Experientia. 1970;26:1020-1021
-
(1970)
Experientia
, vol.26
, pp. 1020-1021
-
-
Dolfini, S.1
Courgeon, A.M.2
Tiepolo, L.3
-
77
-
-
0015792039
-
Replication of DNA in eukaryotic chromosomes
-
Callan HG. Replication of DNA in eukaryotic chromosomes. Br Med Bull. 1973;29:192-195
-
(1973)
Br Med Bull
, vol.29
, pp. 192-195
-
-
Callan, H.G.1
-
78
-
-
0032906460
-
Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster
-
Sasaki T, Sawado T, Yamaguchi M, Shinomiya T. Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster. Mol Cell Biol. 1999;19:547-555
-
(1999)
Mol Cell Biol
, vol.19
, pp. 547-555
-
-
Sasaki, T.1
Sawado, T.2
Yamaguchi, M.3
Shinomiya, T.4
-
79
-
-
0028829358
-
Transition in specification of embryonic metazoan DNA replication origins
-
Hyrien O, Maric C, Mechali M. Transition in specification of embryonic metazoan DNA replication origins. Science. 1995;270:994-997
-
(1995)
Science
, vol.270
, pp. 994-997
-
-
Hyrien, O.1
Maric, C.2
Mechali, M.3
-
80
-
-
79952270733
-
Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription
-
Mesner LD, Valsakumar V, Karnani N, Dutta A, Hamlin JL, Bekiranov S. Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription. Genome Res. 2011;21:377-389
-
(2011)
Genome Res
, vol.21
, pp. 377-389
-
-
Mesner, L.D.1
Valsakumar, V.2
Karnani, N.3
Dutta, A.4
Hamlin, J.L.5
Bekiranov, S.6
-
81
-
-
1842509904
-
DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding
-
Remus D, Beall EL, Botchan MR. DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding. EMBO J. 2004;23:897-907
-
(2004)
EMBO J
, vol.23
, pp. 897-907
-
-
Remus, D.1
Beall, E.L.2
Botchan, M.R.3
-
82
-
-
10644297436
-
Coordination of replication and transcription along a Drosophila chromosome
-
MacAlpine DM, Rodriguez HK, Bell SP. Coordination of replication and transcription along a Drosophila chromosome. Genes Dev. 2004;18:3094-3105
-
(2004)
Genes Dev
, vol.18
, pp. 3094-3105
-
-
Macalpine, D.M.1
Rodriguez, H.K.2
Bell, S.P.3
-
83
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger C, Penkett CJ, Bahler J, Nurse P. Genome-wide characterization of fission yeast DNA replication origins. EMBO J. 2006;25:5171-179
-
(2006)
EMBO J
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.J.2
Bahler, J.3
Nurse, P.4
-
84
-
-
0031265756
-
Replication profile of Saccharomyces cerevisiae chromosome VI
-
Friedman KL, Brewer BJ, Fangman WL. Replication profile of Saccharomyces cerevisiae chromosome VI. Genes Cells. 1997;2:667-678
-
(1997)
Genes Cells
, vol.2
, pp. 667-678
-
-
Friedman, K.L.1
Brewer, B.J.2
Fangman, W.L.3
-
85
-
-
33845405316
-
DNA replication origin interference increases the spacing between initiation events in human cells
-
Lebofsky R, Heilig R, Sonnleitner M, Weissenbach J, Bensimon A. DNA replication origin interference increases the spacing between initiation events in human cells. Mol Biol Cell. 2006;17:5337-5345
-
(2006)
Mol Biol Cell
, vol.17
, pp. 5337-5345
-
-
Lebofsky, R.1
Heilig, R.2
Sonnleitner, M.3
Weissenbach, J.4
Bensimon, A.5
-
86
-
-
54849417379
-
A revisionist replicon model for higher eukaryotic genomes
-
Hamlin JL, Mesner LD, Lar O, Torres R, Chodaparambil SV, Wang L. A revisionist replicon model for higher eukaryotic genomes. J Cell Biochem. 2008;105:321-329
-
(2008)
J Cell Biochem
, vol.105
, pp. 321-329
-
-
Hamlin, J.L.1
Mesner, L.D.2
Lar, O.3
Torres, R.4
Chodaparambil, S.V.5
Wang, L.6
-
87
-
-
0013887376
-
Autoradiography of chromosomal DNA fibers from Chinese hamster cells
-
Huberman JA, Riggs AD. Autoradiography of chromosomal DNA fibers from Chinese hamster cells. Proc Natl Acad Sci U S A. 1966;55:599-606
-
(1966)
Proc Natl Acad Sci U S A
, vol.55
, pp. 599-606
-
-
Huberman, J.A.1
Riggs, A.D.2
-
88
-
-
0037319618
-
Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem
-
Hyrien O, Marheineke K, Goldar A. Paradoxes of eukaryotic DNA replication: MCM proteins and the random completion problem. Bioessays. 2003;25:116-125
-
(2003)
Bioessays
, vol.25
, pp. 116-125
-
-
Hyrien, O.1
Marheineke, K.2
Goldar, A.3
-
89
-
-
36348988518
-
DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI
-
Czajkowsky DM, Liu J, Hamlin JL, Shao Z. DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI. J Mol Biol. 2008;375:12-19
-
(2008)
J Mol Biol
, vol.375
, pp. 12-19
-
-
Czajkowsky, D.M.1
Liu, J.2
Hamlin, J.L.3
Shao, Z.4
-
90
-
-
30044438457
-
DNA replication origins fire stochastically in fission yeast
-
Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N. DNA replication origins fire stochastically in fission yeast. Mol Biol Cell. 2006;17:308-316
-
(2006)
Mol Biol Cell
, vol.17
, pp. 308-316
-
-
Patel, P.K.1
Arcangioli, B.2
Baker, S.P.3
Bensimon, A.4
Rhind, N.5
-
91
-
-
0027213553
-
Eukaryotic DNA replication: Anatomy of an origin
-
DePamphilis ML. Eukaryotic DNA replication: anatomy of an origin. Annu Rev Biochem. 1993;62:29-63
-
(1993)
Annu Rev Biochem
, vol.62
, pp. 29-63
-
-
Depamphilis, M.L.1
-
92
-
-
0026687406
-
The gene for a novel human lamin maps at a highly transcribed locus of chromosome 19 which replicates at the onset of S-phase
-
Biamonti G, Giacca M, Perini G, et al. The gene for a novel human lamin maps at a highly transcribed locus of chromosome 19 which replicates at the onset of S-phase. Mol Cell Biol. 1992;12:3499-3506
-
(1992)
Mol Cell Biol
, vol.12
, pp. 3499-3506
-
-
Biamonti, G.1
Giacca, M.2
Perini, G.3
-
93
-
-
2642647114
-
Initiation of DNA replication at CpG islands in mammalian chromosomes
-
Delgado S, Gomez M, Bird A, Antequera F. Initiation of DNA replication at CpG islands in mammalian chromosomes. EMBO J. 1998;17:2426-2435
-
(1998)
EMBO J
, vol.17
, pp. 2426-2435
-
-
Delgado, S.1
Gomez, M.2
Bird, A.3
Antequera, F.4
-
94
-
-
0033914209
-
A replication initiation sites in the c-myc locus in human cells
-
Tao L, Dong Z, Leffak M, Zannis-Hadjopoulos M, Price G. Major DNA replication initiation sites in the c-myc locus in human cells. J Cell Biochem. 2000;78:442-457
-
(2000)
J Cell Biochem
, vol.78
, pp. 442-457
-
-
Tao, L.1
Dong, Z.2
Leffak, M.3
Zannis-Hadjopoulos, M.4
Price, G.5
Major, D.N.6
-
95
-
-
0036591890
-
Replication timing and transcriptional control: Beyond cause and effect
-
Gilbert DM. Replication timing and transcriptional control: beyond cause and effect. Curr Opin Cell Biol. 2002;14:277-283
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 277-283
-
-
Gilbert, D.M.1
-
97
-
-
70349235389
-
Dynamic changes in chromatin structure through post-translational modifications of histone H3 during replication origin activation
-
Rampakakis E, Di Paola D, Chan MK, Zannis-Hadjopoulos M. Dynamic changes in chromatin structure through post-translational modifications of histone H3 during replication origin activation. J Cell Biochem. 2009;108:400-407
-
(2009)
J Cell Biochem
, vol.108
, pp. 400-407
-
-
Rampakakis, E.1
Di Paola, D.2
Chan, M.K.3
Zannis-Hadjopoulos, M.4
-
98
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney E, Stamatoyannopoulos JA, Dutta A, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007;447:799-816
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
-
99
-
-
76049105950
-
Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection
-
Karnani N, Taylor CM, Malhotra A, Dutta A. Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection. Mol Biol Cell. 2010;21:393-404
-
(2010)
Mol Biol Cell
, vol.21
, pp. 393-404
-
-
Karnani, N.1
Taylor, C.M.2
Malhotra, A.3
Dutta, A.4
-
100
-
-
34250327950
-
Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas
-
Karnani N, Taylor C, Malhotra A, Dutta A. Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas. Genome Res. 2007;17:865-876
-
(2007)
Genome Res
, vol.17
, pp. 865-876
-
-
Karnani, N.1
Taylor, C.2
Malhotra, A.3
Dutta, A.4
-
101
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
Vogelauer M, Rubbi L, Lucas I, Brewer BJ, Grunstein M. Histone acetylation regulates the time of replication origin firing. Mol Cell. 2002;10:1223-1233
-
(2002)
Mol Cell
, vol.10
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
102
-
-
2442660397
-
The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae
-
Aparicio JG, Viggiani CJ, Gibson DG, Aparicio OM. The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae. Mol Cell Biol. 2004;24:4769-4780
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4769-4780
-
-
Aparicio, J.G.1
Viggiani, C.J.2
Gibson, D.G.3
Aparicio, O.M.4
-
103
-
-
43049124410
-
An ARS element inhibits DNA replication through a SIR2-dependent mechanism
-
Crampton A, Chang F, Pappas DL Jr., Frisch RL, Weinreich M. An ARS element inhibits DNA replication through a SIR2-dependent mechanism. Mol Cell. 2008;30:156-166
-
(2008)
Mol Cell
, vol.30
, pp. 156-166
-
-
Crampton, A.1
Chang, F.2
Pappas Jr., D.L.3
Frisch, R.L.4
Weinreich, M.5
-
104
-
-
65449160972
-
Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae
-
Knott SR, Viggiani CJ, Tavare S, Aparicio OM. Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. Genes Dev. 2009;23:1077-1090
-
(2009)
Genes Dev
, vol.23
, pp. 1077-1090
-
-
Knott, S.R.1
Viggiani, C.J.2
Tavare, S.3
Aparicio, O.M.4
-
105
-
-
57349149434
-
Genome-wide studies highlight indirect links between human replication origins and gene regulation
-
Cadoret JC, Meisch F, Hassan-Zadeh V, et al. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc Natl Acad Sci U S A. 2008;105:15837-15842
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 15837-15842
-
-
Cadoret, J.C.1
Meisch, F.2
Hassan-Zadeh, V.3
-
106
-
-
66149138883
-
Transcription initiation activity sets replication origin efficiency in mammalian cells
-
Sequeira-Mendes J, Diaz-Uriarte R, Apedaile A, Huntley D, Brockdorff N, Gomez M. Transcription initiation activity sets replication origin efficiency in mammalian cells. PLoS Genet. 2009;5:e1000446
-
(2009)
PLoS Genet
, vol.5
-
-
Sequeira-Mendes, J.1
Diaz-Uriarte, R.2
Apedaile, A.3
Huntley, D.4
Brockdorff, N.5
Gomez, M.6
-
107
-
-
2342468603
-
Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage
-
Gomez M, Brockdorff N. Heterochromatin on the inactive X chromosome delays replication timing without affecting origin usage. Proc Natl Acad Sci U S A. 2004;101:6923-6928
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 6923-6928
-
-
Gomez, M.1
Brockdorff, N.2
-
108
-
-
33644861248
-
A question of timing: Emerging links between transcription and replication
-
Schwaiger M, Schubeler D. A question of timing: emerging links between transcription and replication. Curr Opin Genet Dev. 2006;16:177-183
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 177-183
-
-
Schwaiger, M.1
Schubeler, D.2
-
109
-
-
33747796664
-
Broadening of DNA replication origin usage during metazoan cell differentiation
-
Dazy S, Gandrillon O, Hyrien O, Prioleau MN. Broadening of DNA replication origin usage during metazoan cell differentiation. EMBO Rep. 2006;7:806-811
-
(2006)
EMBO Rep
, vol.7
, pp. 806-811
-
-
Dazy, S.1
Gandrillon, O.2
Hyrien, O.3
Prioleau, M.N.4
-
110
-
-
61849177618
-
Chromatin state marks cell-type-and gender-specific replication of the Drosophila genome
-
Schwaiger M, Stadler MB, Bell O, Kohler H, Oakeley EJ, Schubeler D. Chromatin state marks cell-type-and gender-specific replication of the Drosophila genome. Genes Dev. 2009;23:589-601
-
(2009)
Genes Dev
, vol.23
, pp. 589-601
-
-
Schwaiger, M.1
Stadler, M.B.2
Bell, O.3
Kohler, H.4
Oakeley, E.J.5
Schubeler, D.6
-
111
-
-
0037376187
-
Same origins of DNA replication function on the active and inactive human X chromosomes
-
Cohen SM, Brylawski BP, Cordeiro-Stone M, Kaufman DG. Same origins of DNA replication function on the active and inactive human X chromosomes. J Cell Biochem. 2003;88: 923-931
-
(2003)
J Cell Biochem
, vol.88
, pp. 923-931
-
-
Cohen, S.M.1
Brylawski, B.P.2
Cordeiro-Stone, M.3
Kaufman, D.G.4
-
112
-
-
0028971217
-
Participation of the human beta-globin locus control region in initiation of DNA replication
-
Aladjem MI, Groudine M, Brody LL, et al. Participation of the human beta-globin locus control region in initiation of DNA replication. Science. 1995;270:815-819
-
(1995)
Science
, vol.270
, pp. 815-819
-
-
Aladjem, M.I.1
Groudine, M.2
Brody, L.L.3
-
113
-
-
0027749608
-
Replication structure of the human beta-globin gene domain
-
Kitsberg D, Selig S, Keshet I, Cedar H. Replication structure of the human beta-globin gene domain. Nature. 1993;366:588-590
-
(1993)
Nature
, vol.366
, pp. 588-590
-
-
Kitsberg, D.1
Selig, S.2
Keshet, I.3
Cedar, H.4
-
114
-
-
0025107556
-
A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus
-
Forrester WC, Epner E, Driscoll MC, et al. A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus. Genes Dev. 1990;4:1637-1649
-
(1990)
Genes Dev
, vol.4
, pp. 1637-1649
-
-
Forrester, W.C.1
Epner, E.2
Driscoll, M.C.3
-
115
-
-
0035092886
-
DNA replication control through interaction of E2F-RB and the origin recognition complex
-
Bosco G, Du W, Orr-Weaver TL. DNA replication control through interaction of E2F-RB and the origin recognition complex. Nat Cell Biol. 2001;3:289-295
-
(2001)
Nat Cell Biol
, vol.3
, pp. 289-295
-
-
Bosco, G.1
Du, W.2
Orr-Weaver, T.L.3
-
116
-
-
0347457073
-
Role for a Drosophila Mybcontaining protein complex in site-specific DNA replication
-
Beall EL, Manak JR, Zhou S, Bell M, Lipsick JS, Botchan MR. Role for a Drosophila Mybcontaining protein complex in site-specific DNA replication. Nature. 2002;420:833-837
-
(2002)
Nature
, vol.420
, pp. 833-837
-
-
Beall, E.L.1
Manak, J.R.2
Zhou, S.3
Bell, M.4
Lipsick, J.S.5
Botchan, M.R.6
-
117
-
-
0029959927
-
In vivo protein-DNA interactions at human DNA replication origin
-
Dimitrova DS, Giacca M, Demarchi F, Biamonti G, Riva S, Falaschi A. In vivo protein-DNA interactions at human DNA replication origin. Proc Natl Acad Sci U S A. 1996;93:1498-1503
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 1498-1503
-
-
Dimitrova, D.S.1
Giacca, M.2
Demarchi, F.3
Biamonti, G.4
Riva, S.5
Falaschi, A.6
-
118
-
-
0035104474
-
Nucleosomes positioned by ORC facilitate the initiation of DNA replication
-
Lipford JR, Bell SP. Nucleosomes positioned by ORC facilitate the initiation of DNA replication. Mol Cell. 2001;7:21-30
-
(2001)
Mol Cell
, vol.7
, pp. 21-30
-
-
Lipford, J.R.1
Bell, S.P.2
-
119
-
-
33745807643
-
Differential binding of replication proteins across the human c-myc replicator
-
Ghosh M, Kemp M, Liu G, Ritzi M, Schepers A, Leffak M. Differential binding of replication proteins across the human c-myc replicator. Mol Cell Biol. 2006;26:5270-5283
-
(2006)
Mol Cell Biol
, vol.26
, pp. 5270-5283
-
-
Ghosh, M.1
Kemp, M.2
Liu, G.3
Ritzi, M.4
Schepers, A.5
Leffak, M.6
-
120
-
-
10544236917
-
c-Jun stimulates origin-dependent DNA unwinding by polyomavirus large T antigen
-
Ito K, Asano M, Hughes P, et al. c-Jun stimulates origin-dependent DNA unwinding by polyomavirus large T antigen. EMBO J. 1996;15:5636-5646
-
(1996)
EMBO J
, vol.15
, pp. 5636-5646
-
-
Ito, K.1
Asano, M.2
Hughes, P.3
-
121
-
-
0025766819
-
The yeast GAL4 protein transactivates the polyomavirus origin of DNA replication in mouse cells
-
Baru M, Shlissel M, Manor H. The yeast GAL4 protein transactivates the polyomavirus origin of DNA replication in mouse cells. J Virol. 1991;65:3496-3503
-
(1991)
J Virol
, vol.65
, pp. 3496-3503
-
-
Baru, M.1
Shlissel, M.2
Manor, H.3
-
122
-
-
0026345126
-
Enhancer effect of bovine papillomavirus E2 protein in replication of polyomavirus DNA
-
Nilsson M, Forsberg M, You ZY, Westin G, Magnusson G. Enhancer effect of bovine papillomavirus E2 protein in replication of polyomavirus DNA. Nucleic Acids Res. 1991;19:7061-7065
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 7061-7065
-
-
Nilsson, M.1
Forsberg, M.2
You, Z.Y.3
Westin, G.4
Magnusson, G.5
-
123
-
-
0027496089
-
Two novel functions associated with the Rel oncoproteins: DNA Replication and Cell-specific Transcriptional Activation
-
Ishikawa H, Asano M, Kanda T, Kumar S, Gelinas C, Ito Y. Two novel functions associated with the Rel oncoproteins: DNA replication and cell-specific transcriptional activation. Oncogene. 1993;8:2889-2896
-
(1993)
Oncogene
, vol.8
, pp. 2889-2896
-
-
Ishikawa, H.1
Asano, M.2
Kanda, T.3
Kumar, S.4
Gelinas, C.5
Ito, Y.6
-
124
-
-
0028222958
-
Stimulation of polyomavirus DNA replication by wild-type p53 through the DNA-binding site
-
Kanda T, Segawa K, Ohuchi N, Mori S, Ito Y. Stimulation of polyomavirus DNA replication by wild-type p53 through the DNA-binding site. Mol Cell Biol. 1994;14:2651-2663
-
(1994)
Mol Cell Biol
, vol.14
, pp. 2651-2663
-
-
Kanda, T.1
Segawa, K.2
Ohuchi, N.3
Mori, S.4
Ito, Y.5
-
125
-
-
0025989907
-
Activation of BPV-1 replication in vitro by the transcription factor E2
-
Yang L, Li R, Mohr IJ, Clark R, Botchan MR. Activation of BPV-1 replication in vitro by the transcription factor E2. Nature. 1991;353:628-632
-
(1991)
Nature
, vol.353
, pp. 628-632
-
-
Yang, L.1
Li, R.2
Mohr, I.J.3
Clark, R.4
Botchan, M.R.5
-
126
-
-
0027400464
-
Bovine papilloma virus (BPV)-encoded E2 protein enhances binding of E1 protein to the BPV replication origin
-
Seo YS, Muller F, Lusky M, et al. Bovine papilloma virus (BPV)-encoded E2 protein enhances binding of E1 protein to the BPV replication origin. Proc Natl Acad Sci U S A. 1993;90:2865-2689
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 2865-2869
-
-
Seo, Y.S.1
Muller, F.2
Lusky, M.3
-
127
-
-
0029617680
-
Co-operative interaction between the initiator E1 and the transcriptional activator E2 is required for replicator specific DNA replication of bovine papillomavirus in vivo and in vitro
-
Sedman J, Stenlund A. Co-operative interaction between the initiator E1 and the transcriptional activator E2 is required for replicator specific DNA replication of bovine papillomavirus in vivo and in vitro. EMBO J. 1995;14:6218-6228
-
(1995)
EMBO J
, vol.14
, pp. 6218-6228
-
-
Sedman, J.1
Stenlund, A.2
-
128
-
-
34547232986
-
Non-transcriptional control of DNA replication by c-Myc
-
Dominguez-Sola D, Ying CY, Grandori C, et al. Non-transcriptional control of DNA replication by c-Myc. Nature. 2007;448:445-451
-
(2007)
Nature
, vol.448
, pp. 445-451
-
-
Dominguez-Sola, D.1
Ying, C.Y.2
Grandori, C.3
-
129
-
-
52449101436
-
Transcription-independent functions of MYC: Regulation of translation and DNA replication
-
Cole MD, Cowling VH. Transcription-independent functions of MYC: regulation of translation and DNA replication. Nat Rev Mol Cell Biol. 2008;9:810-815
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 810-815
-
-
Cole, M.D.1
Cowling, V.H.2
-
130
-
-
0037630079
-
Reconstructing MYC
-
Levens DL. Reconstructing MYC. Genes Dev. 2003;17:1071-1077
-
(2003)
Genes Dev
, vol.17
, pp. 1071-1077
-
-
Levens, D.L.1
-
131
-
-
67650146183
-
Grandori C. c-Myc accelerates S-phase and requires WRN to avoid replication stress
-
Robinson K, Asawachaicharn N, Galloway DA, Grandori C. c-Myc accelerates S-phase and requires WRN to avoid replication stress. PloS One. 2009;4:e5951
-
(2009)
PloS One
, vol.4
-
-
Robinson, K.1
Asawachaicharn, N.2
Galloway, D.A.3
-
132
-
-
84867511667
-
The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle
-
Swarnalatha M, Singh AK, Kumar V. The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle. Nucleic Acids Res. 2012;40:9021-9035
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9021-9035
-
-
Swarnalatha, M.1
Singh, A.K.2
Kumar, V.3
-
133
-
-
34548221522
-
Molecular and structural transactions at human DNA replication origins
-
Falaschi A, Abdurashidova G, Sandoval O, Radulescu S, Biamonti G, Riva S. Molecular and structural transactions at human DNA replication origins. Cell Cycle. 2007;6:1705-1712
-
(2007)
Cell Cycle
, vol.6
, pp. 1705-1712
-
-
Falaschi, A.1
Abdurashidova, G.2
Sandoval, O.3
Radulescu, S.4
Biamonti, G.5
Riva, S.6
-
134
-
-
39749176602
-
The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells
-
Jorgensen HF, Azuara V, Amoils S, et al. The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells. Genome Biol. 2007;8:R169
-
(2007)
Genome Biol
, vol.8
-
-
Jorgensen, H.F.1
Azuara, V.2
Amoils, S.3
-
135
-
-
4444384150
-
The replicon revisited: An old model learns new tricks in metazoan chromosomes
-
Aladjem MI, Fanning E. The replicon revisited: an old model learns new tricks in metazoan chromosomes. EMBO Rep. 2004;5:686-691
-
(2004)
EMBO Rep
, vol.5
, pp. 686-691
-
-
Aladjem, M.I.1
Fanning, E.2
-
136
-
-
0030976320
-
Strand asymmetries in DNA evolution
-
Francino MP, Ochman H. Strand asymmetries in DNA evolution. Trends Genet. 1997;13:240-245
-
(1997)
Trends Genet
, vol.13
, pp. 240-245
-
-
Francino, M.P.1
Ochman, H.2
-
137
-
-
0032543992
-
Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome
-
Fijalkowska IJ, Jonczyk P, Tkaczyk MM, Bialoskorska M, Schaaper RM. Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome. Proc Natl Acad Sci U S A. 1998;95:10020-10025
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 10020-10025
-
-
Fijalkowska, I.J.1
Jonczyk, P.2
Tkaczyk, M.M.3
Bialoskorska, M.4
Schaaper, R.M.5
-
138
-
-
79961039218
-
Replication-associated mutational asymmetry in the human genome
-
Chen CL, Duquenne L, Audit B, et al. Replication-associated mutational asymmetry in the human genome. Mol Biol Evol. 2011;28:2327-2337
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2327-2337
-
-
Chen, C.L.1
Duquenne, L.2
Audit, B.3
-
139
-
-
0029985398
-
Asymmetric substitution patterns in the two DNA strands of bacteria
-
Lobry JR. Asymmetric substitution patterns in the two DNA strands of bacteria. Mol Biol Evol. 1996;13:660-665
-
(1996)
Mol Biol Evol
, vol.13
, pp. 660-665
-
-
Lobry, J.R.1
-
140
-
-
0032860238
-
Asymmetric substitution patterns: A review of possible underlying mutational or selective mechanisms
-
Frank AC, Lobry JR. Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms. Gene. 1999;238:65-77
-
(1999)
Gene
, vol.238
, pp. 65-77
-
-
Frank, A.C.1
Lobry, J.R.2
-
141
-
-
0033166375
-
Principal causes of hot spots for cytosine to thymine mutations at sites of cytosine methylation in growing cells: A model, its experimental support and implications
-
Lutsenko E, Bhagwat AS. Principal causes of hot spots for cytosine to thymine mutations at sites of cytosine methylation in growing cells: a model, its experimental support and implications. Mutat Res. 1999;437:11-20
-
(1999)
Mutat Res
, vol.437
, pp. 11-20
-
-
Lutsenko, E.1
Bhagwat, A.S.2
-
142
-
-
3142679507
-
The replication-related organization of bacterial genomes
-
Rocha EP. The replication-related organization of bacterial genomes. Microbiology. 2004;150:1609-1627
-
(2004)
Microbiology
, vol.150
, pp. 1609-1627
-
-
Rocha, E.P.1
-
143
-
-
0032524384
-
Analyzing genomes with cumulative skew diagrams
-
Grigoriev A. Analyzing genomes with cumulative skew diagrams. Nucleic Acids Res. 1998;26:2286-2290
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2286-2290
-
-
Grigoriev, A.1
-
144
-
-
0029938912
-
Origin of replication of Mycoplasma genitalium
-
Lobry JR. Origin of replication of Mycoplasma genitalium. Science. 1996;272:745-746
-
(1996)
Science
, vol.272
, pp. 745-746
-
-
Lobry, J.R.1
-
145
-
-
0034695920
-
Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome?
-
Gierlik A, Kowalczuk M, Mackiewicz P, Dudek MR, Cebrat S. Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome? J Theor Biol. 2000;202: 305-314
-
(2000)
J Theor Biol
, vol.202
, pp. 305-314
-
-
Gierlik, A.1
Kowalczuk, M.2
Mackiewicz, P.3
Dudek, M.R.4
Cebrat, S.5
-
146
-
-
22244455429
-
Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins
-
Touchon M, Nicolay S, Audit B, et al. Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins. Proc Natl Acad Sci U S A. 2005;102:9836-9841
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 9836-9841
-
-
Touchon, M.1
Nicolay, S.2
Audit, B.3
-
147
-
-
34548396264
-
Human gene organization driven by the coordination of replication and transcription
-
Huvet M, Nicolay S, Touchon M, et al. Human gene organization driven by the coordination of replication and transcription. Genome Res. 2007;17:1278-1285
-
(2007)
Genome Res
, vol.17
, pp. 1278-1285
-
-
Huvet, M.1
Nicolay, S.2
Touchon, M.3
-
148
-
-
80052523848
-
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
-
Cayrou C, Coulombe P, Vigneron A, et al. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res. 2011;21:1438-1449
-
(2011)
Genome Res
, vol.21
, pp. 1438-1449
-
-
Cayrou, C.1
Coulombe, P.2
Vigneron, A.3
-
149
-
-
33344470620
-
Isolating apparently pure libraries of replication origins from complex genomes
-
Mesner LD, Crawford EL, Hamlin JL. Isolating apparently pure libraries of replication origins from complex genomes. Mol Cell. 2006;21:719-726
-
(2006)
Mol Cell
, vol.21
, pp. 719-726
-
-
Mesner, L.D.1
Crawford, E.L.2
Hamlin, J.L.3
-
150
-
-
62349104090
-
The relationship between DNA replication and human genome organization
-
Necsulea A, Guillet C, Cadoret JC, Prioleau MN, Duret L. The relationship between DNA replication and human genome organization. Mol Biol Evol. 2009;26:729-741
-
(2009)
Mol Biol Evol
, vol.26
, pp. 729-741
-
-
Necsulea, A.1
Guillet, C.2
Cadoret, J.C.3
Prioleau, M.N.4
Duret, L.5
-
151
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
Wang JC. Cellular roles of DNA topoisomerases: a molecular perspective. Nat Rev Mol Cell Biol. 2002;3:430-440
-
(2002)
Nat Rev Mol Cell Biol
, vol.3
, pp. 430-440
-
-
Wang, J.C.1
-
152
-
-
84859042868
-
Preventing replication stress to maintain genome stability: Resolving conflicts between replication and transcription
-
Bermejo R, Lai MS, Foiani M. Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription. Mol Cell. 2012;45:710-718
-
(2012)
Mol Cell
, vol.45
, pp. 710-718
-
-
Bermejo, R.1
Lai, M.S.2
Foiani, M.3
-
153
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
Champoux JJ. DNA topoisomerases: structure, function, and mechanism. Annu Rev Biochem. 2001;70:369-413
-
(2001)
Annu Rev Biochem
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
154
-
-
34547626213
-
Top1-and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation
-
Bermejo R, Doksani Y, Capra T, et al. Top1-and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation. Genes Dev. 2007;21:1921-1936
-
(2007)
Genes Dev
, vol.21
, pp. 1921-1936
-
-
Bermejo, R.1
Doksani, Y.2
Capra, T.3
-
155
-
-
29144472375
-
A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping
-
Ansari A, Hampsey M. A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping. Genes Dev. 2005;19:2969-2978
-
(2005)
Genes Dev
, vol.19
, pp. 2969-2978
-
-
Ansari, A.1
Hampsey, M.2
-
156
-
-
33745001795
-
SAGA interacting factors confine subdiffusion of transcribed genes to the nuclear envelope
-
Cabal GG, Genovesio A, Rodriguez-Navarro S, et al. SAGA interacting factors confine subdiffusion of transcribed genes to the nuclear envelope. Nature. 2006;441:770-773
-
(2006)
Nature
, vol.441
, pp. 770-773
-
-
Cabal, G.G.1
Genovesio, A.2
Rodriguez-Navarro, S.3
-
157
-
-
53749089421
-
THO/Sub2p functions to coordinate 3′-end processing with gene-nuclear pore association
-
Rougemaille M, Dieppois G, Kisseleva-Romanova E, et al. THO/Sub2p functions to coordinate 3′-end processing with gene-nuclear pore association. Cell. 2008;135:308-321
-
(2008)
Cell
, vol.135
, pp. 308-321
-
-
Rougemaille, M.1
Dieppois, G.2
Kisseleva-Romanova, E.3
-
158
-
-
72749098124
-
Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex
-
Tan-Wong SM, Wijayatilake HD, Proudfoot NJ. Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex. Genes Dev. 2009;23:2610-2624
-
(2009)
Genes Dev
, vol.23
, pp. 2610-2624
-
-
Tan-Wong, S.M.1
Wijayatilake, H.D.2
Proudfoot, N.J.3
-
159
-
-
0034329461
-
A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae
-
Chavez S, Beilharz T, Rondon AG, et al. A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae. EMBO J. 2000;19:5824-5834
-
(2000)
EMBO J
, vol.19
, pp. 5824-5834
-
-
Chavez, S.1
Beilharz, T.2
Rondon, A.G.3
-
160
-
-
19344378943
-
Rules of engagement: Co-transcriptional recruitment of pre-mRNA processing factors
-
Bentley DL. Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors. Curr Opin Cell Biol. 2005;17:251-256
-
(2005)
Curr Opin Cell Biol
, vol.17
, pp. 251-256
-
-
Bentley, D.L.1
-
161
-
-
46449087802
-
Biogenesis of mRNPs: Integrating different processes in the eukaryotic nucleus
-
Luna R, Gaillard H, Gonzalez-Aguilera C, Aguilera A. Biogenesis of mRNPs: integrating different processes in the eukaryotic nucleus. Chromosoma. 2008;117:319-331
-
(2008)
Chromosoma
, vol.117
, pp. 319-331
-
-
Luna, R.1
Gaillard, H.2
Gonzalez-Aguilera, C.3
Aguilera, A.4
-
162
-
-
67449113551
-
Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae
-
Azvolinsky A, Giresi PG, Lieb JD, Zakian VA. Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae. Mol Cell. 2009;34:722-734
-
(2009)
Mol Cell
, vol.34
, pp. 722-734
-
-
Azvolinsky, A.1
Giresi, P.G.2
Lieb, J.D.3
Zakian, V.A.4
-
163
-
-
69449108384
-
Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription
-
Bermejo R, Capra T, Gonzalez-Huici V, et al. Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription. Cell. 2009;138:870-884
-
(2009)
Cell
, vol.138
, pp. 870-884
-
-
Bermejo, R.1
Capra, T.2
Gonzalez-Huici, V.3
-
164
-
-
0025212715
-
HPR1, a novel yeast gene that prevents intrachromosomal excision recombination, shows carboxy-terminal homology to the Saccharomyces cerevisiae TOP1 gene
-
Aguilera A, Klein HL. HPR1, a novel yeast gene that prevents intrachromosomal excision recombination, shows carboxy-terminal homology to the Saccharomyces cerevisiae TOP1 gene. Mol Cell Biol. 1990;10:1439-1451
-
(1990)
Mol Cell Biol
, vol.10
, pp. 1439-1451
-
-
Aguilera, A.1
Klein, H.L.2
-
165
-
-
77955664901
-
The interface between transcription and mRNP export: From THO to THSC/TREX-2
-
Rondon AG, Jimeno S, Aguilera A. The interface between transcription and mRNP export: from THO to THSC/TREX-2. Biochim Biophys Acta. 2010;1799:533-538
-
(2010)
Biochim Biophys Acta
, vol.1799
, pp. 533-538
-
-
Rondon, A.G.1
Jimeno, S.2
Aguilera, A.3
-
166
-
-
84855286267
-
Genome instability and transcription elongation impairment in human cells depleted of THO/TREX
-
Dominguez-Sanchez MS, Barroso S, Gomez-Gonzalez B, Luna R, Aguilera A. Genome instability and transcription elongation impairment in human cells depleted of THO/TREX. PLoS Genet. 2011;7:e1002386
-
(2011)
PLoS Genet
, vol.7
-
-
Dominguez-Sanchez, M.S.1
Barroso, S.2
Gomez-Gonzalez, B.3
Luna, R.4
Aguilera, A.5
-
167
-
-
80052424582
-
Space and time in the nucleus: Developmental control of replication timing and chromosome architecture
-
Gilbert DM, Takebayashi SI, Ryba T, et al. Space and time in the nucleus: developmental control of replication timing and chromosome architecture. Cold Spring Harb Symp Quant Biol. 2010;75:143-153
-
(2010)
Cold Spring Harb Symp Quant Biol
, vol.75
, pp. 143-153
-
-
Gilbert, D.M.1
Takebayashi, S.I.2
Ryba, T.3
-
168
-
-
84866384009
-
Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia
-
Ryba T, Battaglia D, Chang BH, et al. Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia. Genome Res. 2012;22:1833-1844
-
(2012)
Genome Res
, vol.22
, pp. 1833-1844
-
-
Ryba, T.1
Battaglia, D.2
Chang, B.H.3
-
169
-
-
77957369058
-
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture
-
Yaffe E, Farkash-Amar S, Polten A, Yakhini Z, Tanay A, Simon I. Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture. PLoS Genet. 2010;6:e1001011
-
(2010)
PLoS Genet
, vol.6
-
-
Yaffe, E.1
Farkash-Amar, S.2
Polten, A.3
Yakhini, Z.4
Tanay, A.5
Simon, I.6
-
170
-
-
0032559794
-
Replicon clusters are stable units of chromosome structure: Evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells
-
Jackson DA, Pombo A. Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells. J Cell Biol. 1998;140:1285-1295
-
(1998)
J Cell Biol
, vol.140
, pp. 1285-1295
-
-
Jackson, D.A.1
Pombo, A.2
-
171
-
-
0032517784
-
Spatial and temporal dynamics of DNA replication sites in mammalian cells
-
Ma H, Samarabandu J, Devdhar RS, et al. Spatial and temporal dynamics of DNA replication sites in mammalian cells. J Cell Biol. 1998;143:1415-1425
-
(1998)
J Cell Biol
, vol.143
, pp. 1415-1425
-
-
Ma, H.1
Samarabandu, J.2
Devdhar, R.S.3
-
172
-
-
0033369515
-
The spatial position and replication timing of chromosomal domains are both established in early G1 phase
-
Dimitrova DS, Gilbert DM. The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol Cell. 1999;4:983-993
-
(1999)
Mol Cell
, vol.4
, pp. 983-993
-
-
Dimitrova, D.S.1
Gilbert, D.M.2
-
173
-
-
9444269829
-
Stable chromosomal units determine the spatial and temporal organization of DNA replication
-
Sadoni N, Cardoso MC, Stelzer EH, Leonhardt H, Zink D. Stable chromosomal units determine the spatial and temporal organization of DNA replication. J Cell Sci. 2004;117:5353-5365
-
(2004)
J Cell Sci
, vol.117
, pp. 5353-5365
-
-
Sadoni, N.1
Cardoso, M.C.2
Stelzer, E.H.3
Leonhardt, H.4
Zink, D.5
-
174
-
-
17444425224
-
Replication timing of human chromosome 6
-
Woodfine K, Beare DM, Ichimura K, et al. Replication timing of human chromosome 6. Cell Cycle. 2005;4:172-176
-
(2005)
Cell Cycle
, vol.4
, pp. 172-176
-
-
Woodfine, K.1
Beare, D.M.2
Ichimura, K.3
-
176
-
-
54949085778
-
Global reorganization of replication domains during embryonic stem cell differentiation
-
Hiratani I, Ryba T, Itoh M, et al. Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biol. 2008;6:e245
-
(2008)
PLoS Biol
, vol.6
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
-
177
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009;326:289-293
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
-
178
-
-
33745251622
-
In and out of the replication factory
-
Meister P, Taddei A, Gasser SM. In and out of the replication factory. Cell. 2006;125:1233-1235
-
(2006)
Cell
, vol.125
, pp. 1233-1235
-
-
Meister, P.1
Taddei, A.2
Gasser, S.M.3
-
179
-
-
77952994784
-
Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
-
Ryba T, Hiratani I, Lu J, et al. Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res. 2010;20:761-770
-
(2010)
Genome Res
, vol.20
, pp. 761-770
-
-
Ryba, T.1
Hiratani, I.2
Lu, J.3
-
180
-
-
84866412836
-
Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells
-
Cornacchia D, Dileep V, Quivy JP, et al. Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells. EMBO J. 2012;31:3678-3690
-
(2012)
EMBO J
, vol.31
, pp. 3678-3690
-
-
Cornacchia, D.1
Dileep, V.2
Quivy, J.P.3
-
181
-
-
84856103786
-
Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae
-
Knott SR, Peace JM, Ostrow AZ, et al. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell. 2012;148:99-111
-
(2012)
Cell
, vol.148
, pp. 99-111
-
-
Knott, S.R.1
Peace, J.M.2
Ostrow, A.Z.3
-
182
-
-
3142593637
-
Persistence length of chromatin determines origin spacing in Xenopus early-embryo DNA replication: Quantitative comparisons between theory and experiment
-
Jun S, Herrick J, Bensimon A, Bechhoefer J. Persistence length of chromatin determines origin spacing in Xenopus early-embryo DNA replication: quantitative comparisons between theory and experiment. Cell Cycle. 2004;3:223-229
-
(2004)
Cell Cycle
, vol.3
, pp. 223-229
-
-
Jun, S.1
Herrick, J.2
Bensimon, A.3
Bechhoefer, J.4
-
183
-
-
84855272663
-
Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
-
Guilbaud G, Rappailles A, Baker A, et al. Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome. PLoS Comput Biol. 2011;7:e1002322
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Guilbaud, G.1
Rappailles, A.2
Baker, A.3
-
184
-
-
0034711945
-
Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos
-
Lucas I, Chevrier-Miller M, Sogo JM, Hyrien O. Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos. J Mol Biol. 2000;296:769-786
-
(2000)
J Mol Biol
, vol.296
, pp. 769-786
-
-
Lucas, I.1
Chevrier-Miller, M.2
Sogo, J.M.3
Hyrien, O.4
-
185
-
-
33751520767
-
DNA replication timing: Random thoughts about origin firing
-
Rhind N. DNA replication timing: random thoughts about origin firing. Nat Cell Biol. 2006;8:1313-1316
-
(2006)
Nat Cell Biol
, vol.8
, pp. 1313-1316
-
-
Rhind, N.1
-
186
-
-
77649231526
-
Mathematical modelling of eukaryotic DNA replication
-
Hyrien O, Goldar A. Mathematical modelling of eukaryotic DNA replication. Chromosome Res. 2010;18:147-161
-
(2010)
Chromosome Res
, vol.18
, pp. 147-161
-
-
Hyrien, O.1
Goldar, A.2
-
187
-
-
84855289466
-
Do replication forks control late origin firing in Saccharomyces cerevisiae?
-
Ma E, Hyrien O, Goldar A. Do replication forks control late origin firing in Saccharomyces cerevisiae? Nucleic Acids Res. 2012;40:2010-2019
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2010-2019
-
-
Ma, E.1
Hyrien, O.2
Goldar, A.3
-
188
-
-
84861147700
-
Replication fork polarity gradients revealed by megabasesized U-shaped replication timing domains in human cell lines
-
Baker A, Audit B, Chen CL, et al. Replication fork polarity gradients revealed by megabasesized U-shaped replication timing domains in human cell lines. PLoS Comput Biol. 2012;8:e1002443
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Baker, A.1
Audit, B.2
Chen, C.L.3
-
189
-
-
0034725550
-
Replication fork density increases during DNA synthesis in X. laevis egg extracts
-
Herrick J, Stanislawski P, Hyrien O, Bensimon A. Replication fork density increases during DNA synthesis in X. laevis egg extracts. J Mol Biol. 2000;300:1133-1142
-
(2000)
J Mol Biol
, vol.300
, pp. 1133-1142
-
-
Herrick, J.1
Stanislawski, P.2
Hyrien, O.3
Bensimon, A.4
-
190
-
-
0035825156
-
Replication origins in Xenopus egg extract are 5-15 kilobases apart and are activated in clusters that fire at different times
-
Blow JJ, Gillespie PJ, Francis D, Jackson DA. Replication origins in Xenopus egg extract are 5-15 kilobases apart and are activated in clusters that fire at different times. J Cell Biol. 2001;152:15-25
-
(2001)
J Cell Biol
, vol.152
, pp. 15-25
-
-
Blow, J.J.1
Gillespie, P.J.2
Francis, D.3
Jackson, D.A.4
-
191
-
-
0023193418
-
Role of replication time in the control of tissue-specific gene expression
-
Holmquist GP. Role of replication time in the control of tissue-specific gene expression. Am J Hum Genet. 1987;40:151-173
-
(1987)
Am J Hum Genet
, vol.40
, pp. 151-173
-
-
Holmquist, G.P.1
-
192
-
-
65449142884
-
Replication timing and transcriptional control: Beyond cause and effect, part II
-
Hiratani I, Takebayashi S, Lu J, Gilbert DM. Replication timing and transcriptional control: beyond cause and effect, part II. Curr Opin Genet Dev. 2009;19:142-149
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 142-149
-
-
Hiratani, I.1
Takebayashi, S.2
Lu, J.3
Gilbert, D.M.4
-
194
-
-
0036606915
-
Base composition bias might result from competition for metabolic resources
-
Rocha EP, Danchin A. Base composition bias might result from competition for metabolic resources. Trends Genet. 2002;18:291-294
-
(2002)
Trends Genet
, vol.18
, pp. 291-294
-
-
Rocha, E.P.1
Danchin, A.2
-
195
-
-
0024966756
-
Chromosomal location and evolutionary rate variation in enterobacterial genes
-
Sharp PM, Shields DC, Wolfe KH, Li WH. Chromosomal location and evolutionary rate variation in enterobacterial genes. Science. 1989;246:808-810
-
(1989)
Science
, vol.246
, pp. 808-810
-
-
Sharp, P.M.1
Shields, D.C.2
Wolfe, K.H.3
Li, W.H.4
-
196
-
-
0021347480
-
Metabolic alterations mediated by 2-ketobutyrate in Escherichia coli K12
-
Danchin A, Dondon L, Daniel J. Metabolic alterations mediated by 2-ketobutyrate in Escherichia coli K12. Mol Gen Genet. 1984;193:473-478
-
(1984)
Mol Gen Genet
, vol.193
, pp. 473-478
-
-
Danchin, A.1
Dondon, L.2
Daniel, J.3
-
197
-
-
0036667696
-
Gene location and bacterial sequence divergence
-
Mira A, Ochman H. Gene location and bacterial sequence divergence. Mol Biol Evol. 2002;19:1350-1358
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1350-1358
-
-
Mira, A.1
Ochman, H.2
-
198
-
-
83255189766
-
DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes
-
De S, Michor F. DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes. Nat Biotechnol. 2011;29:1103-1108
-
(2011)
Nat Biotechnol
, vol.29
, pp. 1103-1108
-
-
De, S.1
Michor, F.2
-
199
-
-
0028908039
-
Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex
-
Liu B, Alberts BM. Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex. Science. 1995; 267:1131-1137
-
(1995)
Science
, vol.267
, pp. 1131-1137
-
-
Liu, B.1
Alberts, B.M.2
-
200
-
-
77955448694
-
What happens when replication and transcription complexes collide?
-
Pomerantz RT, O'Donnell M. What happens when replication and transcription complexes collide? Cell Cycle. 2010;9:2537-2543
-
(2010)
Cell Cycle
, vol.9
, pp. 2537-2543
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
201
-
-
79959629469
-
Analysis of protein dynamics at active, stalled, and collapsed replication forks
-
Sirbu BM, Couch FB, Feigerle JT, Bhaskara S, Hiebert SW, Cortez D. Analysis of protein dynamics at active, stalled, and collapsed replication forks. Genes Dev. 2011;25:1320-1327
-
(2011)
Genes Dev
, vol.25
, pp. 1320-1327
-
-
Sirbu, B.M.1
Couch, F.B.2
Feigerle, J.T.3
Bhaskara, S.4
Hiebert, S.W.5
Cortez, D.6
-
202
-
-
0026733965
-
Consequences of replication fork movement through transcription units in vivo
-
French S. Consequences of replication fork movement through transcription units in vivo. Science. 1992;258:1362-1365
-
(1992)
Science
, vol.258
, pp. 1362-1365
-
-
French, S.1
-
203
-
-
12844265439
-
Mechanisms of transcription-replication collisions in bacteria
-
Mirkin EV, Mirkin SM. Mechanisms of transcription-replication collisions in bacteria. Mol Cell Biol. 2005;25:888-895
-
(2005)
Mol Cell Biol
, vol.25
, pp. 888-895
-
-
Mirkin, E.V.1
Mirkin, S.M.2
-
205
-
-
34248394295
-
Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
-
Wang JD, Berkmen MB, Grossman AD. Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. Proc Natl Acad Sci U S A. 2007;104:5608-5613
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 5608-5613
-
-
Wang, J.D.1
Berkmen, M.B.2
Grossman, A.D.3
-
206
-
-
57649129186
-
The replisome uses mRNA as a primer after colliding with RNA polymerase
-
Pomerantz RT, O'Donnell M. The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature. 2008;456:762-766
-
(2008)
Nature
, vol.456
, pp. 762-766
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
207
-
-
1842377482
-
Bacteriophage phi29 DNA replication arrest caused by codirectional collisions with the transcription machinery
-
Elias-Arnanz M, Salas M. Bacteriophage phi29 DNA replication arrest caused by codirectional collisions with the transcription machinery. EMBO J. 1997;16:5775-5783
-
(1997)
EMBO J
, vol.16
, pp. 5775-5783
-
-
Elias-Arnanz, M.1
Salas, M.2
-
208
-
-
0027443441
-
The DNA replication fork can pass RNA polymerase without displacing the nascent transcript
-
Liu B, Wong ML, Tinker RL, Geiduschek EP, Alberts BM. The DNA replication fork can pass RNA polymerase without displacing the nascent transcript. Nature. 1993;366: 33-39
-
(1993)
Nature
, vol.366
, pp. 33-39
-
-
Liu, B.1
Wong, M.L.2
Tinker, R.L.3
Geiduschek, E.P.4
Alberts, B.M.5
-
209
-
-
0024276903
-
When polymerases collide: Replication and the transcriptional organization of the E. Coli Chromosome
-
Brewer BJ. When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell. 1988;53:679-686
-
(1988)
Cell
, vol.53
, pp. 679-686
-
-
Brewer, B.J.1
-
210
-
-
0032417093
-
Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
-
McLean MJ, Wolfe KH, Devine KM. Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes. J Mol Evol. 1998;47:691-696
-
(1998)
J Mol Evol
, vol.47
, pp. 691-696
-
-
McLean, M.J.1
Wolfe, K.H.2
Devine, K.M.3
-
211
-
-
0032584101
-
Strand compositional asymmetry in bacterial and large viral genomes
-
Mrazek J, Karlin S. Strand compositional asymmetry in bacterial and large viral genomes. Proc Natl Acad Sci U S A. 1998;95:3720-3725
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 3720-3725
-
-
Mrazek, J.1
Karlin, S.2
-
212
-
-
0344668838
-
Gene essentiality determines chromosome organisation in bacteria
-
Rocha EP, Danchin A. Gene essentiality determines chromosome organisation in bacteria. Nucleic Acids Res. 2003;31:6570-6577
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6570-6577
-
-
Rocha, E.P.1
Danchin, A.2
-
213
-
-
0020085937
-
Chromosomal locations of the genes for rRNA in Escherichia coli K-12
-
Ellwood M, Nomura M. Chromosomal locations of the genes for rRNA in Escherichia coli K-12. J Bacteriol. 1982;149:458-468
-
(1982)
J Bacteriol
, vol.149
, pp. 458-468
-
-
Ellwood, M.1
Nomura, M.2
-
214
-
-
0017729265
-
Genetics of bacterial ribosomes
-
Nomura M, Morgan EA. Genetics of bacterial ribosomes. Annu Rev Genet. 1977;11:297-347
-
(1977)
Annu Rev Genet
, vol.11
, pp. 297-347
-
-
Nomura, M.1
Morgan, E.A.2
-
215
-
-
0141625269
-
Transcription through the roadblocks: The role of RNA polymerase cooperation
-
Epshtein V, Toulme F, Rahmouni AR, Borukhov S, Nudler E. Transcription through the roadblocks: the role of RNA polymerase cooperation. EMBO J. 2003;22:4719-4727
-
(2003)
EMBO J
, vol.22
, pp. 4719-4727
-
-
Epshtein, V.1
Toulme, F.2
Rahmouni, A.R.3
Borukhov, S.4
Nudler, E.5
-
216
-
-
0030731108
-
The complete genome sequence of the grampositive bacterium Bacillus subtilis
-
Kunst F, Ogasawara N, Moszer I, et al. The complete genome sequence of the grampositive bacterium Bacillus subtilis. Nature. 1997;390:249-256
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
-
217
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner FR, Plunkett G 3rd, Bloch CA, et al. The complete genome sequence of Escherichia coli K-12. Science. 1997;277:1453-1462
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
-
218
-
-
0036709941
-
Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
-
Rocha E. Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? Trends Microbiol. 2002;10: 393-395
-
(2002)
Trends Microbiol
, vol.10
, pp. 393-395
-
-
Rocha, E.1
-
219
-
-
0031843516
-
A replication in the fission yeast, Schizosaccharomyces pombe
-
Sanchez JA, Kim SM, Huberman JA. Ribosomal DNA replication in the fission yeast, Schizosaccharomyces pombe. Exp Cell Res. 1998;238:220-230
-
(1998)
Exp Cell Res
, vol.238
, pp. 220-230
-
-
Sanchez, J.A.1
Kim, S.M.2
Huberman, J.A.3
Ribosomal, D.N.4
-
220
-
-
0024291357
-
A replication fork barrier at the 3′ end of yeast ribosomal RNA genes
-
Brewer BJ, Fangman WL. A replication fork barrier at the 3′ end of yeast ribosomal RNA genes. Cell. 1988;55:637-643
-
(1988)
Cell
, vol.55
, pp. 637-643
-
-
Brewer, B.J.1
Fangman, W.L.2
-
221
-
-
0023806623
-
Organization of replication of ribosomal DNA in Saccharomyces cerevisiae
-
Linskens MH, Huberman JA. Organization of replication of ribosomal DNA in Saccharomyces cerevisiae. Mol Cell Biol. 1988;8:4927-4935
-
(1988)
Mol Cell Biol
, vol.8
, pp. 4927-4935
-
-
Linskens, M.H.1
Huberman, J.A.2
-
222
-
-
0035882059
-
A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe
-
Dalgaard JZ, Klar AJ. A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes Dev. 2001;15:2060-2068
-
(2001)
Genes Dev
, vol.15
, pp. 2060-2068
-
-
Dalgaard, J.Z.1
Klar, A.J.2
-
223
-
-
4644291834
-
Swi1-and swi3-dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe
-
Krings G, Bastia D. swi1-and swi3-dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe. Proc Natl Acad Sci U S A. 2004;101:14085-14090
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 14085-14090
-
-
Krings, G.1
Bastia, D.2
-
224
-
-
0027486027
-
Initiation and termination of DNA replication in human rRNA genes
-
Little RD, Platt TH, Schildkraut CL. Initiation and termination of DNA replication in human rRNA genes. Mol Cell Biol. 1993;13:6600-6613
-
(1993)
Mol Cell Biol
, vol.13
, pp. 6600-6613
-
-
Little, R.D.1
Platt, T.H.2
Schildkraut, C.L.3
-
226
-
-
79960802984
-
The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores
-
Bermejo R, Capra T, Jossen R, et al. The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores. Cell. 2011;146:233-246
-
(2011)
Cell
, vol.146
, pp. 233-246
-
-
Bermejo, R.1
Capra, T.2
Jossen, R.3
-
227
-
-
46449117951
-
Asymmetric bidirectional replication at the human DBF4 origin
-
Romero J, Lee H. Asymmetric bidirectional replication at the human DBF4 origin. Nat Struct Mol Biol. 2008;15:722-729
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 722-729
-
-
Romero, J.1
Lee, H.2
-
228
-
-
84869453191
-
Origin of DNA Replication At the Human Lamin B2 Locus: OBR Or ABR?
-
Lee H, Romero J. Origin of DNA replication at the human lamin B2 locus: OBR or ABR? Cell Cycle. 2012;11:4281-4283
-
(2012)
Cell Cycle
, vol.11
, pp. 4281-4283
-
-
Lee, H.1
Romero, J.2
-
229
-
-
0034677730
-
Start sites of bidirectional DNA synthesis at the human lamin B2 origin
-
Abdurashidova G, Deganuto M, Klima R, et al. Start sites of bidirectional DNA synthesis at the human lamin B2 origin. Science. 2000;287:2023-2036
-
(2000)
Science
, vol.287
, pp. 2023-2036
-
-
Abdurashidova, G.1
Deganuto, M.2
Klima, R.3
-
230
-
-
0030462462
-
Transcriptioninduced mutations: Increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli
-
Beletskii A, Bhagwat AS. Transcriptioninduced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli. Proc Natl Acad Sci U S A. 1996;93:13919-13924
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 13919-13924
-
-
Beletskii, A.1
Bhagwat, A.S.2
-
231
-
-
0029874447
-
Asymmetries generated by transcription-coupled repair in enterobacterial genes
-
Francino MP, Chao L, Riley MA, Ochman H. Asymmetries generated by transcription-coupled repair in enterobacterial genes. Science. 1996;272:107-109
-
(1996)
Science
, vol.272
, pp. 107-109
-
-
Francino, M.P.1
Chao, L.2
Riley, M.A.3
Ochman, H.4
-
232
-
-
84866978035
-
Threedimensional genome architecture influences partner selection for chromosomal translocations in human disease
-
Engreitz JM, Agarwala V, Mirny LA. Threedimensional genome architecture influences partner selection for chromosomal translocations in human disease. PloS One. 2012; 7:e44196
-
(2012)
PloS One
, vol.7
-
-
Engreitz, J.M.1
Agarwala, V.2
Mirny, L.A.3
-
233
-
-
0027731437
-
Initiation at closely spaced replication origins in a yeast chromosome
-
Brewer BJ, Fangman WL. Initiation at closely spaced replication origins in a yeast chromosome. Science. 1993;262:1728-1731
-
(1993)
Science
, vol.262
, pp. 1728-1731
-
-
Brewer, B.J.1
Fangman, W.L.2
-
234
-
-
0033568196
-
Activation of dormant origins of DNA replication in budding yeast
-
Santocanale C, Sharma K, Diffley JF. Activation of dormant origins of DNA replication in budding yeast. Genes Dev. 1999;13:2360-2364
-
(1999)
Genes Dev
, vol.13
, pp. 2360-2364
-
-
Santocanale, C.1
Sharma, K.2
Diffley, J.F.3
-
235
-
-
3242708425
-
Regulation of DNA replication by ATR: Signaling in response to DNA intermediates
-
Shechter D, Costanzo V, Gautier J. Regulation of DNA replication by ATR: signaling in response to DNA intermediates. DNA Repair. 2004;3:901-908
-
(2004)
DNA Repair
, vol.3
, pp. 901-908
-
-
Shechter, D.1
Costanzo, V.2
Gautier, J.3
-
236
-
-
21444434023
-
ATM and ATR check in on origins: A dynamic model for origin selection and activation
-
Shechter D, Gautier J. ATM and ATR check in on origins: a dynamic model for origin selection and activation. Cell Cycle. 2005;4:235-238
-
(2005)
Cell Cycle
, vol.4
, pp. 235-238
-
-
Shechter, D.1
Gautier, J.2
-
237
-
-
3142544855
-
Control of replication origin density and firing time in Xenopus egg extracts: Role of a caffeine-sensitive, ATR-dependent checkpoint
-
Marheineke K, Hyrien O. Control of replication origin density and firing time in Xenopus egg extracts: role of a caffeine-sensitive, ATR-dependent checkpoint. J Biol Chem. 2004;279:28071-28081
-
(2004)
J Biol Chem
, vol.279
, pp. 28071-28081
-
-
Marheineke, K.1
Hyrien, O.2
-
238
-
-
5044224075
-
ATR, claspin and the Rad9-Rad1-Hus1 complex regulate Chk1 and Cdc25A in the absence of DNA damage
-
Sorensen CS, Syljuasen RG, Lukas J, Bartek J. ATR, claspin and the Rad9-Rad1-Hus1 complex regulate Chk1 and Cdc25A in the absence of DNA damage. Cell Cycle. 2004;3: 941-945
-
(2004)
Cell Cycle
, vol.3
, pp. 941-945
-
-
Sorensen, C.S.1
Syljuasen, R.G.2
Lukas, J.3
Bartek, J.4
-
239
-
-
0037423308
-
Regulation of cellular and SV40 virus origins of replication by Chk1-dependent intrinsic and UVC radiation-induced checkpoints
-
Miao H, Seiler JA, Burhans WC. Regulation of cellular and SV40 virus origins of replication by Chk1-dependent intrinsic and UVC radiation-induced checkpoints. J Biol Chem. 2003;278:4295-4304
-
(2003)
J Biol Chem
, vol.278
, pp. 4295-4304
-
-
Miao, H.1
Seiler, J.A.2
Burhans, W.C.3
-
240
-
-
0034177408
-
Targeted disruption of the cell-cycle checkpoint gene ATR leads to early embryonic lethality in mice
-
de Klein A, Muijtjens M, van Os R, et al. Targeted disruption of the cell-cycle checkpoint gene ATR leads to early embryonic lethality in mice. Curr Biol. 2000;10:479-482
-
(2000)
Curr Biol
, vol.10
, pp. 479-482
-
-
de Klein, A.1
Muijtjens, M.2
van Os, R.3
-
241
-
-
3242670803
-
ATR and ATM regulate the timing of DNA replication origin firing
-
Shechter D, Costanzo V, Gautier J. ATR and ATM regulate the timing of DNA replication origin firing. Nat Cell Biol. 2004;6:648-655
-
(2004)
Nat Cell Biol
, vol.6
, pp. 648-655
-
-
Shechter, D.1
Costanzo, V.2
Gautier, J.3
-
242
-
-
82455164158
-
Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
-
Mantiero D, Mackenzie A, Donaldson A, Zegerman P. Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast. EMBO J. 2011;30:4805-4814
-
(2011)
EMBO J
, vol.30
, pp. 4805-4814
-
-
Mantiero, D.1
Mackenzie, A.2
Donaldson, A.3
Zegerman, P.4
-
244
-
-
17244366865
-
Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions
-
Gorgoulis VG, Vassiliou LV, Karakaidos P, et al. Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions. Nature. 2005;434:907-913
-
(2005)
Nature
, vol.434
, pp. 907-913
-
-
Gorgoulis, V.G.1
Vassiliou, L.V.2
Karakaidos, P.3
-
245
-
-
17244367849
-
DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis
-
Bartkova J, Horejsi Z, Koed K, et al. DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis. Nature. 2005;434:864-870
-
(2005)
Nature
, vol.434
, pp. 864-870
-
-
Bartkova, J.1
Horejsi, Z.2
Koed, K.3
-
246
-
-
0036902410
-
53BP1 functions in an ATM-dependent checkpoint pathway that is constitutively activated in human cancer
-
DiTullio RA Jr., Mochan TA, Venere M, et al. 53BP1 functions in an ATM-dependent checkpoint pathway that is constitutively activated in human cancer. Nat Cell Biol. 2002;4:998-1002
-
(2002)
Nat Cell Biol
, vol.4
, pp. 998-1002
-
-
Ditullio Jr., R.A.1
Mochan, T.A.2
Venere, M.3
-
247
-
-
33845235459
-
Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints
-
Bartkova J, Rezaei N, Liontos M, et al. Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints. Nature. 2006;444:633-637
-
(2006)
Nature
, vol.444
, pp. 633-637
-
-
Bartkova, J.1
Rezaei, N.2
Liontos, M.3
-
248
-
-
33845269825
-
Oncogene-induced senescence is a DNA damage response triggered by DNA hyperreplication
-
Di Micco R, Fumagalli M, Cicalese A, et al. Oncogene-induced senescence is a DNA damage response triggered by DNA hyperreplication. Nature. 2006;444:638-642
-
(2006)
Nature
, vol.444
, pp. 638-642
-
-
Di Micco, R.1
Fumagalli, M.2
Cicalese, A.3
-
249
-
-
40449120350
-
An oncogene-induced DNA damage model for cancer development
-
Halazonetis TD, Gorgoulis VG, Bartek J. An oncogene-induced DNA damage model for cancer development. Science. 2008;319:1352-1355
-
(2008)
Science
, vol.319
, pp. 1352-1355
-
-
Halazonetis, T.D.1
Gorgoulis, V.G.2
Bartek, J.3
-
250
-
-
0028338927
-
The human Ha-ras oncogene induces genomic instability in murine fibroblasts within one cell cycle
-
Denko NC, Giaccia AJ, Stringer JR, Stambrook PJ. The human Ha-ras oncogene induces genomic instability in murine fibroblasts within one cell cycle. Proc Natl Acad Sci U S A. 1994;91:5124-5128
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 5124-5128
-
-
Denko, N.C.1
Giaccia, A.J.2
Stringer, J.R.3
Stambrook, P.J.4
-
251
-
-
0029742122
-
Genomic instability in MycER-activated Rat1A-MycER cells
-
Mai S, Fluri M, Siwarski D, Huppi K. Genomic instability in MycER-activated Rat1A-MycER cells. Chromosome Res. 1996;4:365-371
-
(1996)
Chromosome Res
, vol.4
, pp. 365-371
-
-
Mai, S.1
Fluri, M.2
Siwarski, D.3
Huppi, K.4
-
252
-
-
0033616602
-
Transient excess of MYC activity can elicit genomic instability and tumorigenesis
-
Felsher DW, Bishop JM. Transient excess of MYC activity can elicit genomic instability and tumorigenesis. Proc Natl Acad Sci U S A. 1999;96:3940-3944
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 3940-3944
-
-
Felsher, D.W.1
Bishop, J.M.2
-
253
-
-
0033575920
-
Deregulated cyclin E Induces Chromosome Instability
-
Spruck CH, Won KA, Reed SI. Deregulated cyclin E induces chromosome instability. Nature. 1999;401:297-300
-
(1999)
Nature
, vol.401
, pp. 297-300
-
-
Spruck, C.H.1
Won, K.A.2
Reed, S.I.3
-
254
-
-
34547928992
-
Clurman BE. p53 and SCFFbw7 cooperatively restrain cyclin E-associated genome instability
-
Minella AC, Grim JE, Welcker M, Clurman BE. p53 and SCFFbw7 cooperatively restrain cyclin E-associated genome instability. Oncogene. 2007;26:6948-6953
-
(2007)
Oncogene
, vol.26
, pp. 6948-6953
-
-
Minella, A.C.1
Grim, J.E.2
Welcker, M.3
-
255
-
-
0036278984
-
The yeast CDK inhibitor Sic1 prevents genomic instability by promoting replication origin licensing in late G(1)
-
Lengronne A, Schwob E. The yeast CDK inhibitor Sic1 prevents genomic instability by promoting replication origin licensing in late G(1). Mol Cell. 2002;9:1067-1078
-
(2002)
Mol Cell
, vol.9
, pp. 1067-1078
-
-
Lengronne, A.1
Schwob, E.2
-
256
-
-
33748623634
-
Common fragile sites as targets for chromosome rearrangements
-
Arlt MF, Durkin SG, Ragland RL, Glover TW. Common fragile sites as targets for chromosome rearrangements. DNA Repair. 2006;5:1126-1135
-
(2006)
DNA Repair
, vol.5
, pp. 1126-1135
-
-
Arlt, M.F.1
Durkin, S.G.2
Ragland, R.L.3
Glover, T.W.4
-
257
-
-
0029929885
-
Frequent microsatellite alterations at chromosomes 9p21 and 3p14 in oral premalignant lesions and their value in cancer risk assessment
-
Mao L, Lee JS, Fan YH, et al. Frequent microsatellite alterations at chromosomes 9p21 and 3p14 in oral premalignant lesions and their value in cancer risk assessment. Nat Med. 1996;2:682-685
-
(1996)
Nat Med
, vol.2
, pp. 682-685
-
-
Mao, L.1
Lee, J.S.2
Fan, Y.H.3
-
258
-
-
78650959663
-
Massive genomic rearrangement acquired in a single catastrophic event during cancer development
-
Stephens PJ, Greenman CD, Fu B, et al. Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell. 2011;144:27-40
-
(2011)
Cell
, vol.144
, pp. 27-40
-
-
Stephens, P.J.1
Greenman, C.D.2
Fu, B.3
-
259
-
-
80052916562
-
Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements
-
Liu P, Erez A, Nagamani SC, et al. Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements. Cell. 2011;146:889-903
-
(2011)
Cell
, vol.146
, pp. 889-903
-
-
Liu, P.1
Erez, A.2
Nagamani, S.C.3
-
260
-
-
83255165727
-
High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
-
Fudenberg G, Getz G, Meyerson M, Mirny LA. High order chromatin architecture shapes the landscape of chromosomal alterations in cancer. Nat Biotechnol. 2011;29:1109-1113
-
(2011)
Nat Biotechnol
, vol.29
, pp. 1109-1113
-
-
Fudenberg, G.1
Getz, G.2
Meyerson, M.3
Mirny, L.A.4
-
261
-
-
84862778059
-
Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
-
Zhang Y, McCord RP, Ho YJ, et al. Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell. 2012;148:908-921
-
(2012)
Cell
, vol.148
, pp. 908-921
-
-
Zhang, Y.1
McCord, R.P.2
Ho, Y.J.3
-
262
-
-
80053558376
-
Genomewide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells
-
Chiarle R, Zhang Y, Frock RL, et al. Genomewide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell. 2011;147:107-119
-
(2011)
Cell
, vol.147
, pp. 107-119
-
-
Chiarle, R.1
Zhang, Y.2
Frock, R.L.3
-
263
-
-
84860378609
-
Cancer-associated isocitrate dehydrogenase mutations inactivate NADPH-dependent reductive carboxylation
-
Leonardi R, Subramanian C, Jackowski S, Rock CO. Cancer-associated isocitrate dehydrogenase mutations inactivate NADPH-dependent reductive carboxylation. J Biol Chem. 2012;287: 14615-14620
-
(2012)
J Biol Chem
, vol.287
, pp. 14615-14620
-
-
Leonardi, R.1
Subramanian, C.2
Jackowski, S.3
Rock, C.O.4
-
264
-
-
77649305610
-
The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate
-
Ward PS, Patel J, Wise DR, et al. The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate. Cancer Cell. 2010;17:225-234
-
(2010)
Cancer Cell
, vol.17
, pp. 225-234
-
-
Ward, P.S.1
Patel, J.2
Wise, D.R.3
-
265
-
-
78650019179
-
Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
-
Figueroa ME, Abdel-Wahab O, Lu, C, et al. Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation. Cancer Cell. 2010;18:553-567
-
(2010)
Cancer Cell
, vol.18
, pp. 553-567
-
-
Figueroa, M.E.1
Abdel-Wahab, O.2
Lu, C.3
-
266
-
-
84858796262
-
IDH mutation impairs histone demethylation and results in a block to cell differentiation
-
Lu C, Ward PS, Kapoor GS, et al. IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature. 2012;483:474-478
-
(2012)
Nature
, vol.483
, pp. 474-478
-
-
Lu, C.1
Ward, P.S.2
Kapoor, G.S.3
-
267
-
-
84862266735
-
TET2 mutations in acute myeloid leukemia (AML): Results from a comprehensive genetic and clinical analysis of the AML study group
-
Gaidzik VI, Paschka P, Spath D, et al. TET2 mutations in acute myeloid leukemia (AML): results from a comprehensive genetic and clinical analysis of the AML study group. J Clin Oncol. 2012;30:1350-1357
-
(2012)
J Clin Oncol
, vol.30
, pp. 1350-1357
-
-
Gaidzik, V.I.1
Paschka, P.2
Spath, D.3
-
268
-
-
84866510310
-
IDH1/2 mutation is a prognostic marker for survival and predicts response to chemotherapy for grade II gliomas concomitantly treated with radiation therapy
-
Okita Y, Narita Y, Miyakita Y, et al. IDH1/2 mutation is a prognostic marker for survival and predicts response to chemotherapy for grade II gliomas concomitantly treated with radiation therapy. Int J Oncol. Epub 2012 Jul 20
-
(2012)
Int J Oncol.
, pp. 20
-
-
Okita, Y.1
Narita, Y.2
Miyakita, Y.3
-
269
-
-
84856466311
-
IDH mutations predict longer survival and response to temozolomide in secondary glioblastoma
-
SongTao Q, Lei Y, Si G, et al. IDH mutations predict longer survival and response to temozolomide in secondary glioblastoma. Cancer Sci. 2012;103:269-273
-
(2012)
Cancer Sci
, vol.103
, pp. 269-273
-
-
Songtao, Q.1
Lei, Y.2
Si, G.3
-
270
-
-
84868342138
-
Potential application of IDH1 and IDH2 mutations as prognostic indicators in nonpromyelocytic acute myeloid leukemia: A metaanalysis
-
Zhou KG, Jiang LJ, Shang Z, Wang J, Huang L, Zhou JF. Potential application of IDH1 and IDH2 mutations as prognostic indicators in nonpromyelocytic acute myeloid leukemia: a metaanalysis. Leuk Lymphoma. 2012;53:2423-2429.
-
(2012)
Leuk Lymphoma
, vol.53
, pp. 2423-2429
-
-
Zhou, K.G.1
Jiang, L.J.2
Shang, Z.3
Wang, J.4
Huang, L.5
Zhou, J.F.6
-
271
-
-
77954697566
-
Isocitrate dehydrogenase 1 and 2 mutations in cancer: Alterations at a crossroads of cellular metabolism
-
Reitman, ZJ, Yan H. Isocitrate dehydrogenase 1 and 2 mutations in cancer: alterations at a crossroads of cellular metabolism. J Natl Cancer Inst. 2010;102:932-941.
-
(2010)
J Natl Cancer Inst
, vol.102
, pp. 932-941
-
-
Reitman, Z.J.1
Yan, H.2
-
272
-
-
0037340215
-
Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process
-
Bruniquel D, Schwartz RH. Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process. Nat Immunol. 2003;4:235-240
-
(2003)
Nat Immunol
, vol.4
, pp. 235-240
-
-
Bruniquel, D.1
Schwartz, R.H.2
-
273
-
-
40449123137
-
Cyclical DNA methylation of a transcriptionally active promoter
-
Metivier R, Gallais R, Tiffoche C, et al. Cyclical DNA methylation of a transcriptionally active promoter. Nature. 2008;452:45-50
-
(2008)
Nature
, vol.452
, pp. 45-50
-
-
Metivier, R.1
Gallais, R.2
Tiffoche, C.3
-
274
-
-
40449104358
-
Transient cyclical methylation of promoter DNA
-
Kangaspeska S, Stride B, Metivier R, et al. Transient cyclical methylation of promoter DNA. Nature. 2008;452:112-115
-
(2008)
Nature
, vol.452
, pp. 112-115
-
-
Kangaspeska, S.1
Stride, B.2
Metivier, R.3
-
275
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T, Jones S, Wood LD, et al. The consensus coding sequences of human breast and colorectal cancers. Science. 2006;314:268-274
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
-
276
-
-
44349125900
-
Array painting reveals a high frequency of balanced translocations in breast cancer cell lines that break in cancer-relevant genes
-
Howarth KD, Blood KA, Ng BL, et al. Array painting reveals a high frequency of balanced translocations in breast cancer cell lines that break in cancer-relevant genes. Oncogene. 2008;27:3345-3359.
-
(2008)
Oncogene
, vol.27
, pp. 3345-3359
-
-
Howarth, K.D.1
Blood, K.A.2
Ng, B.L.3
|