Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe

EMBO Reports

Volumn 4, Issue 11, 2003, Pages 1048-1053

  Segurado, Mónica ^a   de Luis, Alberto ^a   Antequera, Francisco ^a  

^a UNIVERSITY OF SALAMANCA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AT RICH SEQUENCE; CENTROMERE; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA REPLICATION ORIGIN; GENE LOCATION; GENE LOCUS; GENE SEQUENCE; GENE SILENCING; GENE TARGETING; GENETIC ANALYSIS; GENETIC VARIABILITY; MATING; MOLECULAR RECOGNITION; NONHUMAN; PREDICTION; PRIORITY JOURNAL; RNA TRANSLATION; SCHIZOSACCHAROMYCES POMBE;

AT RICH SEQUENCE; GENOME, FUNGAL; REPLICATION ORIGIN; SCHIZOSACCHAROMYCES; SEQUENCE ANALYSIS, DNA;

SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE;

EID: 0346873031     PISSN: 1469221X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.embor.7400008     Document Type: Article

References (31)

1. Ahmed, S., Saini, S., Arora, S. & Singh, J. (2001) Chromodomain protein Swi6-mediated role of DNA polymerase α in establishment of silencing in fission yeast. J. Biol. Chem., 276, 47814-47821.
2. Brewer, B.J., Sena, E. P. & Fangman, W.L. (1988) in Cancer Cells Vol. 6 (eds Kelly, T. & Stillman, B.) 229-234. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA.
3. Broach, J.R., et al. (1983) Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Quant. Biol., 47, 1165-1173.
4. Chuang, R.Y. & Kelly, T.J. (1999) The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks. Proc. Natl Acad. Sci. USA, 96, 2656-2661.
5. Clyne, R.K. & Kelly, T.J. (1995) Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe. EMBO J., 14, 6348-6357.
6. Dalgaard, J.Z. & Klar, A.J. (2001) A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes Dev., 15, 2060-2068.
7. Delgado, S., Gómez, M., Bird, A. & Antequera, F. (1998) Initiation of DNA replication at CpG islands in mammalian chromosomes. EMBO J. 17, 2426-2435.
8. Dubey, D.D., Zhu, J., Carlson, D.L. Sharma, K. & Huberman, J.A. (1994) Three ARS elements contribute to the ura4 replication origin region in the fission yeast Schizosaccharomyces pombe. EMBO J., 13, 3638-3647.
9. Dubey, D.D., Kim, S.M., Todorov, I.T. & Huberman, J.A. (1996) Large, complex modular structure of a fission yeast DNA replication origin. Curr. Biol., 6, 467-473.
10. Fox, C.A., Loo, S., Dillin, A. & Rine, J. (1995) The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication. Genes Dev., 9, 911-924.
11. Gómez, M. & Antequera, F. (1999) Organization of DNA replication origins in the fission yeast genome. EMBO J., 18, 5683-5690.
12. Huberman, J.A. (1993) in The Cell Cycle. A Practical Approach (eds Fantes, P. & Brooks, R.) 213-234. Oxford University Press, Oxford, UK.
13. Kong, D. & DePamphilis, M.L. (2002) Site-specific ORC binding, pre-replication complex assembly and DNA synthesis at Schizosaccharomyces pombe replication origins. EMBO J., 21, 5567-5576.
14. Lee, J.K., Moon, K.Y., Jiang, Y. & Hurwitz, J. (2001) The Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein. Proc. Natl Acad. Sci. USA, 98, 13589-13594.
15. Maundrell, K., Hutchinson, A. & Shall, S. (1988) Sequence analysis of ARS elements in fission yeast. EMBO J., 7, 2203-2209.
16. Nakayama, J., Allshire, R.C., Klar, A.J. & Grewal, S.I. (2001) A role for DNA polymerase α in epigenetic control of transcriptional silencing in fission yeast. EMBO J., 20, 2857-2866.
17. Newlon, C.S. & Theis, J.F. (1993) The structure and function of yeast ARS elements. Curr. Opin. Gen. Dev. 3, 752-758.
18. Okuno, Y., Okazaki, T. & Masukata, H. (1997) Identification of a predominant replication origin in fission yeast. Nucleic Acids Res., 25, 530 536.
19. Okuno, Y., Satoh, H., Sekiguchi, M. & Masukata, H. (1999) Clustered adenine/thymine stretches are essential for function of a fission yeast replication origin. Mol. Cell. Biol., 19, 6699-6709.
20. Pak, D.T., et al. (1997) Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes. Cell, 91, 311-323.
21. Palacios DeBeer, M.A., Müller, U. & Fox, C.A. (2003) Differential DNA affinity specifies roles for the origin recognition complex in budding yeast heterochromatin. Genes Dev. 17, 1817-1822.
22. Raghuraman, M.K. et al. (2001) Replication dynamics of the yeast genome. Science, 294, 115-121.
23. Reeves, R. & Beckerbauer, L. (2001) HMGI/Y proteins: flexible regulators of transcription and chromatin structure. Biochim. Biophys. Acta, 1519, 13-29.
24. Sanchez, A., Kim, S.M. & Huberman, J. (1998) Ribosomal DNA replication in the fission yeast Schizosaccharomyces pombe. Exp. Cell Res. 238, 220-230.
25. Segurado, M., Gómez, M. & Antequera, F. (2002) Increased recombination intermediates and homologous integration hot spots at DNA replication origins. Mol. Cell, 10, 907-916.
26. Smith, J.G. et al. (1995) Replication of centromere II of Schizosaccharomyces pombe. Mol. Cell. Biol., 15, 5165-5172.
27. Takahashi, T., Ohara, E., Nishitani, H. & Masukata, H. (2003) Multiple ORC binding sites are required for efficient MCM loading and origin firing in fission yeast. EMBO J., 22, 964-974.
28. Theis, J.F. & Newlon, C.S. (1997) The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence. Proc. Natl Acad. Sci. USA, 94, 10786-10791.
29. Theis, J.F. & Newlon, C.S. (2001) Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites. Mol. Cell. Biol., 21, 2790-2801.
30. Wood, V. et al. (2002) The genome sequence of Schizosaccharomyces pombe. Nature, 415, 871-880.
31. Wyrick, J. et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science, 294, 2357-2360.