-
1
-
-
3142768347
-
Chromatin regulates origin activity in Drosophila follicle cells
-
Aggarwal, B.D. and Calvi, B.R. 2004. Chromatin regulates origin activity in Drosophila follicle cells. Nature 430: 372-376.
-
(2004)
Nature
, vol.430
, pp. 372-376
-
-
Aggarwal, B.D.1
Calvi, B.R.2
-
2
-
-
34548789595
-
Replication in hydroxyurea: It's a matter of time
-
Alvino, G.M., Collingwood, D., Murphy, J.M., Delrow, J., Brewer, B.J., and Raghuraman, M.K. 2007. Replication in hydroxyurea: It's a matter of time. Mol. Cell. Biol. 27: 6396-6406.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 6396-6406
-
-
Alvino, G.M.1
Collingwood, D.2
Murphy, J.M.3
Delrow, J.4
Brewer, B.J.5
Raghuraman, M.K.6
-
3
-
-
0030886099
-
Components and dynamics of DNA replication complexes in S. cerevisiae: Redistribution of MCM proteins and Cdc45p during S phase
-
Aparicio, O.M., Weinstein, D.M., and Bell, S.P. 1997. Components and dynamics of DNA replication complexes in S. cerevisiae: Redistribution of MCM proteins and Cdc45p during S phase. Cell 91: 59-69.
-
(1997)
Cell
, vol.91
, pp. 59-69
-
-
Aparicio, O.M.1
Weinstein, D.M.2
Bell, S.P.3
-
4
-
-
2442660397
-
The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharo- myces cerevisiae
-
Aparicio, J.G., Viggiani, C.J., Gibson, D.G., and Aparicio, O.M. 2004. The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharo- myces cerevisiae. Mol. Cell. Biol. 24: 4769-4780.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 4769-4780
-
-
Aparicio, J.G.1
Viggiani, C.J.2
Gibson, D.G.3
Aparicio, O.M.4
-
5
-
-
0035997368
-
DNA replication in eukaryotic cells
-
Bell, S.P. and Dutta, A. 2002. DNA replication in eukaryotic cells. Annu. Rev. Biochem. 71: 333-374.
-
(2002)
Annu. Rev. Biochem
, vol.71
, pp. 333-374
-
-
Bell, S.P.1
Dutta, A.2
-
6
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57: 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
0034610367
-
Genome- wide studies of histone deacetylase function in yeast
-
Bernstein, B.E., Tong, J.K., and Schreiber, S.L. 2000. Genome- wide studies of histone deacetylase function in yeast. Proc. Natl. Acad. Sci. 97: 13708-13713.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 13708-13713
-
-
Bernstein, B.E.1
Tong, J.K.2
Schreiber, S.L.3
-
8
-
-
40849124522
-
A role for Chdl and Set2 in negatively regulating DNA replication in Saccharo- myces cerevisiae
-
Biswas, D., Takahata, S., Xin, H., Dutta-Biswas, R., Yu, Y., Formosa, T., and Stillman, D.J. 2008a. A role for Chdl and Set2 in negatively regulating DNA replication in Saccharo- myces cerevisiae. Genetics 178: 649-659.
-
(2008)
Genetics
, vol.178
, pp. 649-659
-
-
Biswas, D.1
Takahata, S.2
Xin, H.3
Dutta-Biswas, R.4
Yu, Y.5
Formosa, T.6
Stillman, D.J.7
-
9
-
-
47049102833
-
Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S)
-
Biswas, D., Takahata, S., and Stillman, D.J. 2008b. Different genetic functions for the Rpd3(L) and Rpd3(S) complexes suggest competition between NuA4 and Rpd3(S). Mol. Cell. Biol. 28: 4445-4458.
-
(2008)
Mol. Cell. Biol
, vol.28
, pp. 4445-4458
-
-
Biswas, D.1
Takahata, S.2
Stillman, D.J.3
-
10
-
-
0037425623
-
Periodic transcription: A cycle within a cycle
-
doi: 10.1016/S0960-9822(02)01386-6
-
Breeden, L.L. 2003. Periodic transcription: A cycle within a cycle. Curr. Biol. 13: R31-R38. doi: 10.1016/S0960-9822(02)01386-6.
-
(2003)
Curr. Biol
, vol.13
-
-
Breeden, L.L.1
-
11
-
-
27744471474
-
Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex
-
Carrozza, M.J., Florens, L., Swanson, S.K., Shia, W.J., Anderson, S., Yates, J., Washburn, M.P., and Workman, J.L. 2005a. Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex. Biochim. Biophys. Acta 1731: 77-87.
-
(2005)
Biochim. Biophys. Acta
, vol.1731
, pp. 77-87
-
-
Carrozza, M.J.1
Florens, L.2
Swanson, S.K.3
Shia, W.J.4
Anderson, S.5
Yates, J.6
Washburn, M.P.7
Workman, J.L.8
-
12
-
-
27744577727
-
Histone H3 methylation by Set2 directs deace- tylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
Carrozza, M.J., Li, B., Florens, L., Suganuma, T., Swanson, S.K., Lee, K.K., Shia, W.J., Anderson, S., Yates, J., Washburn, M.P., et al. 2005b. Histone H3 methylation by Set2 directs deace- tylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123: 581-592.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
-
13
-
-
0037214352
-
Targeting the MEF2-like transcription factor Smp1 by the stress-activated Hog1 mitogen-activated protein kinase
-
de Nadal, E., Casadome, L., and Posas, F. 2003. Targeting the MEF2-like transcription factor Smp1 by the stress-activated Hog1 mitogen-activated protein kinase. Mol. Cell. Biol. 23: 229-237.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 229-237
-
-
de Nadal, E.1
Casadome, L.2
Posas, F.3
-
14
-
-
1642580754
-
The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes
-
de Nadal, E., Zapater, M., Alepuz, P.M., Sumoy, L., Mas, G., and Posas, F. 2004. The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes. Nature 427: 370-374.
-
(2004)
Nature
, vol.427
, pp. 370-374
-
-
de Nadal, E.1
Zapater, M.2
Alepuz, P.M.3
Sumoy, L.4
Mas, G.5
Posas, F.6
-
15
-
-
0032134456
-
CLB5-dependent activation of late replication origins in S. cerevisiae
-
Donaldson, A.D., Raghuraman, M.K., Friedman, K.L., Cross, F.R., Brewer, B.J., and Fangman, W.L. 1998. CLB5-dependent activation of late replication origins in S. cerevisiae. Mol. Cell 2: 173-182.
-
(1998)
Mol. Cell
, vol.2
, pp. 173-182
-
-
Donaldson, A.D.1
Raghuraman, M.K.2
Friedman, K.L.3
Cross, F.R.4
Brewer, B.J.5
Fangman, W.L.6
-
16
-
-
0034817393
-
Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression
-
Fazzio, T.G., Kooperberg, C., Goldmark, J.P., Neal, C., Basom, R., Delrow, J., and Tsukiyama, T. 2001. Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression. Mol. Cell. Biol. 21: 6450-6460.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 6450-6460
-
-
Fazzio, T.G.1
Kooperberg, C.2
Goldmark, J.P.3
Neal, C.4
Basom, R.5
Delrow, J.6
Tsukiyama, T.7
-
17
-
-
33645152790
-
Genomic mapping of single-stranded DNA in hydroxyurea- challenged yeasts identifies origins of replication
-
Feng, W., Collingwood, D., Boeck, M.E., Fox, L.A., Alvino, G.M., Fangman, W.L., Raghuraman, M.K., and Brewer, B.J. 2006. Genomic mapping of single-stranded DNA in hydroxyurea- challenged yeasts identifies origins of replication. Nat. Cell Biol. 8: 148-155.
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 148-155
-
-
Feng, W.1
Collingwood, D.2
Boeck, M.E.3
Fox, L.A.4
Alvino, G.M.5
Fangman, W.L.6
Raghuraman, M.K.7
Brewer, B.J.8
-
18
-
-
0031265756
-
Replication profile of Saccharomyces cerevisiae chromosome VI
-
Friedman, K.L., Brewer, B.J., and Fangman, W.L. 1997. Replication profile of Saccharomyces cerevisiae chromosome VI. Genes Cells 2: 667-678.
-
(1997)
Genes Cells
, vol.2
, pp. 667-678
-
-
Friedman, K.L.1
Brewer, B.J.2
Fangman, W.L.3
-
19
-
-
0036591890
-
Replication timing and transcriptional control: Beyond cause and effect
-
Gilbert, D.M. 2002. Replication timing and transcriptional control: Beyond cause and effect. Curr. Opin. Cell Biol. 14: 377-383.
-
(2002)
Curr. Opin. Cell Biol
, vol.14
, pp. 377-383
-
-
Gilbert, D.M.1
-
20
-
-
0034721670
-
The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p
-
Goldmark, J.P., Fazzio, T.G., Estep, P.W., Church, G.M., and Tsukiyama, T. 2000. The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell 103: 423-433.
-
(2000)
Cell
, vol.103
, pp. 423-433
-
-
Goldmark, J.P.1
Fazzio, T.G.2
Estep, P.W.3
Church, G.M.4
Tsukiyama, T.5
-
21
-
-
44149084708
-
DNA replication timing of the human (b-globin domain is controlled by histone modification at the origin
-
Goren, A., Tabib, A., Hecht, M., and Cedar, H. 2008. DNA replication timing of the human (b-globin domain is controlled by histone modification at the origin. Genes & Dev. 22: 1319-1324.
-
(2008)
Genes & Dev
, vol.22
, pp. 1319-1324
-
-
Goren, A.1
Tabib, A.2
Hecht, M.3
Cedar, H.4
-
22
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison, C.T., Gordon, D.B., Lee, T.I., Rinaldi, N.J., Macisaac, K.D., Danford, T.W., Hannett, N.M., Tagne, J.B., Reynolds, D.B., Yoo, J., et al. 2004. Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
-
23
-
-
23744505997
-
Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression
-
Irlbacher, H., Franke, J., Manke, T., Vingron, M., and Ehrenhofer- Murray, A.E. 2005. Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression. Genes & Dev. 19: 1811-1822.
-
(2005)
Genes & Dev
, vol.19
, pp. 1811-1822
-
-
Irlbacher, H.1
Franke, J.2
Manke, T.3
Vingron, M.4
Ehrenhofer- Murray, A.E.5
-
24
-
-
29144468972
-
Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
-
Joshi, A.A. and Struhl, K. 2005. Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol. Cell 20: 971-978.
-
(2005)
Mol. Cell
, vol.20
, pp. 971-978
-
-
Joshi, A.A.1
Struhl, K.2
-
25
-
-
0032520953
-
Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
-
Kadosh, D. and Struhl, K. 1998a. Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo. Genes & Dev. 12: 797-805.
-
(1998)
Genes & Dev
, vol.12
, pp. 797-805
-
-
Kadosh, D.1
Struhl, K.2
-
26
-
-
0031865050
-
Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo
-
Kadosh, D. and Struhl, K. 1998b. Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo. Mol. Cell. Biol. 18: 5121-5127.
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 5121-5127
-
-
Kadosh, D.1
Struhl, K.2
-
27
-
-
27744587302
-
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
-
Keogh, M.C., Kurdistani, S.K., Morris, S.A., Ahn, S.H., Podolny, V., Collins, S.R., Schuldiner, M., Chin, K., Punna, T., Thompson, N.J., et al. 2005. Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123: 593-605.
-
(2005)
Cell
, vol.123
, pp. 593-605
-
-
Keogh, M.C.1
Kurdistani, S.K.2
Morris, S.A.3
Ahn, S.H.4
Podolny, V.5
Collins, S.R.6
Schuldiner, M.7
Chin, K.8
Punna, T.9
Thompson, N.J.10
-
28
-
-
0036649756
-
Genome-wide binding map of the histone deacetylase Rpd3 in yeast
-
Kurdistani, S.K., Robyr, D., Tavazoie, S., and Grunstein, M. 2002. Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nat. Genet. 31: 248-254.
-
(2002)
Nat. Genet
, vol.31
, pp. 248-254
-
-
Kurdistani, S.K.1
Robyr, D.2
Tavazoie, S.3
Grunstein, M.4
-
29
-
-
34147156583
-
A site to remember: H3K36 methylation a mark for histone deacetylation
-
Lee, J.S. and Shilatifard, A. 2007. A site to remember: H3K36 methylation a mark for histone deacetylation. Mutat. Res. 618: 130-134.
-
(2007)
Mutat. Res
, vol.618
, pp. 130-134
-
-
Lee, J.S.1
Shilatifard, A.2
-
30
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., et al. 2002. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298: 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
31
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., Carey, M., and Workman, J.L. 2007a. The role of chromatin during transcription. Cell 128: 707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
32
-
-
34249874030
-
Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
-
Li, B., Gogol, M., Carey, M., Pattenden, S.G., Seidel, C., and Workman, J.L. 2007b. Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes & Dev. 21: 1422-1430.
-
(2007)
Genes & Dev
, vol.21
, pp. 1422-1430
-
-
Li, B.1
Gogol, M.2
Carey, M.3
Pattenden, S.G.4
Seidel, C.5
Workman, J.L.6
-
33
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
Longtine, M.S., McKenzie 3rd, A., Demarini, D.J., Shah, N.G., Wach, A., Brachat, A., Philippsen, P., and Pringle, J.R. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961.
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie 3rd, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
34
-
-
34247565469
-
Functional and physical interactions between yeast 14-3-3 proteins, acetyltransferases, and deacetylases in response to DNA replication perturbations
-
Lottersberger, F., Panza, A., Lucchini, G., and Longhese, M.P. 2007. Functional and physical interactions between yeast 14-3-3 proteins, acetyltransferases, and deacetylases in response to DNA replication perturbations. Mol. Cell. Biol. 27: 3266-3281.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 3266-3281
-
-
Lottersberger, F.1
Panza, A.2
Lucchini, G.3
Longhese, M.P.4
-
35
-
-
23444434202
-
A genomic view of eukaryotic DNA replication
-
MacAlpine, D.M. and Bell, S.P. 2005. A genomic view of eukaryotic DNA replication. Chromosome Res. 13: 309-326.
-
(2005)
Chromosome Res
, vol.13
, pp. 309-326
-
-
MacAlpine, D.M.1
Bell, S.P.2
-
36
-
-
61849083545
-
The temporal program of chromosome replication: Genomewide replication in clb5A Saccharomyces cerevisiae
-
McCune, H.J., Danielson, L.S., Alvino, G.M., Collingwood, D., Delrow, J.J., Fangman, W.L., Brewer, B.J., and Raghuraman, M.K. 2008. The temporal program of chromosome replication: Genomewide replication in clb5A Saccharomyces cerevisiae. Genetics 180: 1833-1847.
-
(2008)
Genetics
, vol.180
, pp. 1833-1847
-
-
McCune, H.J.1
Danielson, L.S.2
Alvino, G.M.3
Collingwood, D.4
Delrow, J.J.5
Fangman, W.L.6
Brewer, B.J.7
Raghuraman, M.K.8
-
37
-
-
0033981095
-
RAP, RAP, open up! New wrinkles for RAP1 in yeast
-
Morse, R.H. 2000. RAP, RAP, open up! New wrinkles for RAP1 in yeast. Trends Genet. 16: 51-53.
-
(2000)
Trends Genet
, vol.16
, pp. 51-53
-
-
Morse, R.H.1
-
38
-
-
33846110760
-
OriDB: A DNA replication origin database
-
doi: 10.1093/nar/gkl758
-
Nieduszynski, C.A., Hiraga, S., Ak, P., Benham, C.J., and Donaldson, A.D. 2007. OriDB: A DNA replication origin database. Nucleic Acids Res. 35: D40-D46. doi: 10.1093/nar/gkl758.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Nieduszynski, C.A.1
Hiraga, S.2
Ak, P.3
Benham, C.J.4
Donaldson, A.D.5
-
39
-
-
0035812808
-
Replication dynamics of the yeast genome
-
Raghuraman, M.K., Winzeler, E.A., Collingwood, D., Hunt, S., Wodicka, L., Conway, A., Lockhart, D.J., Davis, R.W., Brewer, B.J., and Fangman, W.L. 2001. Replication dynamics of the yeast genome. Science 294: 115-121.
-
(2001)
Science
, vol.294
, pp. 115-121
-
-
Raghuraman, M.K.1
Winzeler, E.A.2
Collingwood, D.3
Hunt, S.4
Wodicka, L.5
Conway, A.6
Lockhart, D.J.7
Davis, R.W.8
Brewer, B.J.9
Fangman, W.L.10
-
40
-
-
0347986672
-
Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae
-
Reid, J.L., Moqtaderi, Z., and Struhl, K. 2004. Eaf3 regulates the global pattern of histone acetylation in Saccharomyces cerevisiae. Mol. Cell. Biol. 24: 757-764.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 757-764
-
-
Reid, J.L.1
Moqtaderi, Z.2
Struhl, K.3
-
41
-
-
33751520767
-
DNA replication timing: Random thoughts about origin firing
-
Rhind, N. 2006. DNA replication timing: Random thoughts about origin firing. Nat. Cell Biol. 8: 1313-1316.
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 1313-1316
-
-
Rhind, N.1
-
42
-
-
6344270167
-
Global position and recruitment of HATs and HDACs in the yeast genome
-
Robert, F., Pokholok, D.K., Hannett, N.M., Rinaldi, N.J., Chandy, M., Rolfe, A., Workman, J.L., Gifford, D.K., and Young, R.A. 2004. Global position and recruitment of HATs and HDACs in the yeast genome. Mol. Cell 16: 199-209.
-
(2004)
Mol. Cell
, vol.16
, pp. 199-209
-
-
Robert, F.1
Pokholok, D.K.2
Hannett, N.M.3
Rinaldi, N.J.4
Chandy, M.5
Rolfe, A.6
Workman, J.L.7
Gifford, D.K.8
Young, R.A.9
-
43
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
Robyr, D., Suka, Y., Xenarios, I., Kurdistani, S.K., Wang, A., Suka, N., and Grunstein, M. 2002. Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell 109: 437-446.
-
(2002)
Cell
, vol.109
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
Suka, N.6
Grunstein, M.7
-
44
-
-
0032560117
-
Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
-
Rundlett, S.E., Carmen, A.A., Suka, N., Turner, B.M., and Grunstein, M. 1998. Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392: 831-835.
-
(1998)
Nature
, vol.392
, pp. 831-835
-
-
Rundlett, S.E.1
Carmen, A.A.2
Suka, N.3
Turner, B.M.4
Grunstein, M.5
-
45
-
-
4744339263
-
Genome-wide analysis of the relationship between transcrip- tional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast
-
Sabet, N., Volo, S., Yu, C., Madigan, J.P., and Morse, R.H. 2004. Genome-wide analysis of the relationship between transcrip- tional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast. Mol. Cell. Biol. 24: 8823-8833.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 8823-8833
-
-
Sabet, N.1
Volo, S.2
Yu, C.3
Madigan, J.P.4
Morse, R.H.5
-
46
-
-
0032497529
-
A Mec1- and Rad53- dependent checkpoint controls late-firing origins of DNA replication
-
Santocanale, C. and Diffley, J.F. 1998. A Mec1- and Rad53- dependent checkpoint controls late-firing origins of DNA replication. Nature 395: 615-618.
-
(1998)
Nature
, vol.395
, pp. 615-618
-
-
Santocanale, C.1
Diffley, J.F.2
-
47
-
-
0038383032
-
Loss of Sin3/Rpd3 his-tone deacetylase restores the DNA damage response in checkpoint-deficient strains of Saccharomyces cerevisiae
-
Scott, K.L. and Plon, S.E. 2003. Loss of Sin3/Rpd3 his-tone deacetylase restores the DNA damage response in checkpoint-deficient strains of Saccharomyces cerevisiae. Mol. Cell. Biol. 23: 4522-4531.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 4522-4531
-
-
Scott, K.L.1
Plon, S.E.2
-
48
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article, doi: 10.2202/1444-6115.1027
-
Smyth, G.K. 2004. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3: Article 3. doi: 10.2202/1444-6115.1027.
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
49
-
-
0033556028
-
Telomeric chroma- tin modulates replication timing near chromosome ends
-
Stevenson, J.B. and Gottschling, D.E. 1999. Telomeric chroma- tin modulates replication timing near chromosome ends. Genes & Dev. 13: 146-151.
-
(1999)
Genes & Dev
, vol.13
, pp. 146-151
-
-
Stevenson, J.B.1
Gottschling, D.E.2
-
50
-
-
0035037796
-
A novel form of transcriptional silencing by Sum1-1 requires Hst1 and the origin recognition complex
-
Sutton, A., Heller, R.C., Landry, J., Choy, J.S., Sirko, A., and Sternglanz, R. 2001. A novel form of transcriptional silencing by Sum1-1 requires Hst1 and the origin recognition complex. Mol. Cell. Biol. 21: 3514-3522.
-
(2001)
Mol. Cell. Biol
, vol.21
, pp. 3514-3522
-
-
Sutton, A.1
Heller, R.C.2
Landry, J.3
Choy, J.S.4
Sirko, A.5
Sternglanz, R.6
-
51
-
-
24044463869
-
Mrc1 is required for normal progression of replication forks throughout chromatin in S. cerevisiae
-
Szyjka, S.J., Viggiani, C.J., and Aparicio, O.M. 2005. Mrc1 is required for normal progression of replication forks throughout chromatin in S. cerevisiae. Mol. Cell 19: 691-697.
-
(2005)
Mol. Cell
, vol.19
, pp. 691-697
-
-
Szyjka, S.J.1
Viggiani, C.J.2
Aparicio, O.M.3
-
52
-
-
0021691970
-
Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions
-
Thoma, F., Bergman, L.W., and Simpson, R.T. 1984. Nuclease digestion of circular TRP1ARS1 chromatin reveals positioned nucleosomes separated by nuclease-sensitive regions. J. Mol. Biol. 177: 715-733.
-
(1984)
J. Mol. Biol
, vol.177
, pp. 715-733
-
-
Thoma, F.1
Bergman, L.W.2
Simpson, R.T.3
-
53
-
-
33751578231
-
New vectors for simplified construction of BrdU-Incorporating strains of Saccharo- myces cerevisiae
-
Viggiani, C.J. and Aparicio, O.M. 2006. New vectors for simplified construction of BrdU-Incorporating strains of Saccharo- myces cerevisiae. Yeast 23: 1045-1051.
-
(2006)
Yeast
, vol.23
, pp. 1045-1051
-
-
Viggiani, C.J.1
Aparicio, O.M.2
-
54
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
Vogelauer, M., Rubbi, L., Lucas, I., Brewer, B.J., and Grunstein, M. 2002. Histone acetylation regulates the time of replication origin firing. Mol. Cell 10: 1223-1233.
-
(2002)
Mol. Cell
, vol.10
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
55
-
-
56749105947
-
Control of replication initiation by the Sum1/Rfm1/Hst1 histone deacetylase
-
doi: 10.1186/ 1471-2199-9-100
-
Weber, J.M., Irlbacher, H., and Ehrenhofer-Murray, A.E. 2008. Control of replication initiation by the Sum1/Rfm1/Hst1 histone deacetylase. BMC Mol. Biol. 9: 100. doi: 10.1186/ 1471-2199-9-100.
-
(2008)
BMC Mol. Biol
, vol.9
, pp. 100
-
-
Weber, J.M.1
Irlbacher, H.2
Ehrenhofer-Murray, A.E.3
-
56
-
-
1542268353
-
The activities of eukaryotic replication origins in chromatin
-
Weinreich, M. Palacios DeBeer, M.A., and Fox, C.A., 2004. The activities of eukaryotic replication origins in chromatin. Biochim. Biophys. Acta 1677: 142-157.
-
(2004)
Biochim. Biophys. Acta
, vol.1677
, pp. 142-157
-
-
Weinreich, M.1
Palacios DeBeer, M.A.2
Fox, C.A.3
-
57
-
-
0033570901
-
Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Sac- charomyces cerevisiae
-
Xie, J., Pierce, M., Gailus-Durner, V., Wagner, M., Winter, E., and Vershon, A.K. 1999. Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Sac- charomyces cerevisiae. EMBO J. 18: 6448-6454.
-
(1999)
EMBO J
, vol.18
, pp. 6448-6454
-
-
Xie, J.1
Pierce, M.2
Gailus-Durner, V.3
Wagner, M.4
Winter, E.5
Vershon, A.K.6
-
58
-
-
34547236841
-
Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae
-
doi: 10.1186/1471-2164-7-276
-
Xu, W., Aparicio, J.G., Aparicio, O.M., and Tavare, S. 2006. Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. BMC Genomics 7: 276. doi: 10.1186/1471-2164-7-276.
-
(2006)
BMC Genomics
, vol.7
, pp. 276
-
-
Xu, W.1
Aparicio, J.G.2
Aparicio, O.M.3
Tavare, S.4
-
59
-
-
0036668464
-
Mapping of early firing origins on a replication profile of budding yeast
-
Yabuki, N., Terashima, H., and Kitada, K. 2002. Mapping of early firing origins on a replication profile of budding yeast. Genes Cells 7: 781-789.
-
(2002)
Genes Cells
, vol.7
, pp. 781-789
-
-
Yabuki, N.1
Terashima, H.2
Kitada, K.3
-
60
-
-
0031261584
-
The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI
-
Yamashita, M., Hori, Y., Shinomiya, T., Obuse, C., Tsurimoto, T., Yoshikawa, H., and Shirahige, K. 1997. The efficiency and timing of initiation of replication of multiple replicons of Saccharomyces cerevisiae chromosome VI. Genes Cells 2: 655-665.
-
(1997)
Genes Cells
, vol.2
, pp. 655-665
-
-
Yamashita, M.1
Hori, Y.2
Shinomiya, T.3
Obuse, C.4
Tsurimoto, T.5
Yoshikawa, H.6
Shirahige, K.7
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