메뉴 건너뛰기




Volumn 28, Issue 17, 2008, Pages 5265-5274

In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; DNA; THYMINE; TRANSCRIPTION FACTOR;

EID: 50249154897     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.00181-08     Document Type: Article
Times cited : (30)

References (44)
  • 1
    • 3142768347 scopus 로고    scopus 로고
    • Chromatin regulates origin activity in Drosophila follicle cells
    • Aggarwal, B. D., and B. R. Calvi. 2004. Chromatin regulates origin activity in Drosophila follicle cells. Nature 430:372-376.
    • (2004) Nature , vol.430 , pp. 372-376
    • Aggarwal, B.D.1    Calvi, B.R.2
  • 2
    • 34447565003 scopus 로고    scopus 로고
    • Replication in context: Dynamic regulation of DNA replication patterns in metazoans
    • Aladjem, M. I. 2007. Replication in context: dynamic regulation of DNA replication patterns in metazoans. Nat. Rev. Genet. 8:588-600.
    • (2007) Nat. Rev. Genet , vol.8 , pp. 588-600
    • Aladjem, M.I.1
  • 3
    • 0042743766 scopus 로고    scopus 로고
    • Dynamics of DNA replication in mammalian somatic cells: Nucleotide pool modulates origin choice and interorigin spacing
    • Anglana, M., F. Apiou, A. Bensimon, and M. Debatisse. 2003. Dynamics of DNA replication in mammalian somatic cells: nucleotide pool modulates origin choice and interorigin spacing. Cell 114:385-394.
    • (2003) Cell , vol.114 , pp. 385-394
    • Anglana, M.1    Apiou, F.2    Bensimon, A.3    Debatisse, M.4
  • 4
    • 0033569403 scopus 로고    scopus 로고
    • Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element
    • Austin, R. J., T. L. Orr-Weaver, and S. P. Bell. 1999. Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element. Genes Dev. 13:2639-2649.
    • (1999) Genes Dev , vol.13 , pp. 2639-2649
    • Austin, R.J.1    Orr-Weaver, T.L.2    Bell, S.P.3
  • 5
    • 0032472223 scopus 로고    scopus 로고
    • Discrete start sites for DNA synthesis in the yeast ARS1 origin
    • Bielinsky, A. K., and S. A. Gerbi. 1998. Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science 279:95-98.
    • (1998) Science , vol.279 , pp. 95-98
    • Bielinsky, A.K.1    Gerbi, S.A.2
  • 6
    • 0022981734 scopus 로고
    • Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs
    • Blow, J. J., and R. A. Laskey. 1986. Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell 47:577-587.
    • (1986) Cell , vol.47 , pp. 577-587
    • Blow, J.J.1    Laskey, R.A.2
  • 7
    • 0035825156 scopus 로고    scopus 로고
    • Replication origins in Xenopus egg extract are 5-15 kilobases apart and are activated in clusters that fire at different times
    • Blow, J. J., P. J. Gillespie, D. Francis, and D. A. Jackson. 2001. Replication origins in Xenopus egg extract are 5-15 kilobases apart and are activated in clusters that fire at different times. J. Cell Biol. 152:15-25.
    • (2001) J. Cell Biol , vol.152 , pp. 15-25
    • Blow, J.J.1    Gillespie, P.J.2    Francis, D.3    Jackson, D.A.4
  • 8
    • 0033055057 scopus 로고    scopus 로고
    • The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks
    • Chuang, R. Y., and T. J. Kelly. 1999. The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks. Proc. Natl. Acad. Sci. USA 96:2656-2661.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2656-2661
    • Chuang, R.Y.1    Kelly, T.J.2
  • 9
    • 0025808241 scopus 로고
    • DNA replication occurs at discrete sites in pseudonuclei assembled from purified DNA in vitro
    • Cox, L. S., and R. A. Laskey. 1991. DNA replication occurs at discrete sites in pseudonuclei assembled from purified DNA in vitro. Cell 66:271-275.
    • (1991) Cell , vol.66 , pp. 271-275
    • Cox, L.S.1    Laskey, R.A.2
  • 11
    • 0033043743 scopus 로고    scopus 로고
    • Replication origins in metazoan chromosomes: Fact or fiction?
    • DePamphilis, M. L. 1999. Replication origins in metazoan chromosomes: fact or fiction? Bioessays 21:5-16.
    • (1999) Bioessays , vol.21 , pp. 5-16
    • DePamphilis, M.L.1
  • 12
    • 0141557808 scopus 로고    scopus 로고
    • CpG methylation of DNA restricts prereplication complex assembly in Xenopus egg extracts
    • Harvey, K. J., and J. Newport. 2003. CpG methylation of DNA restricts prereplication complex assembly in Xenopus egg extracts. Mol. Cell. Biol. 23:6769-6779.
    • (2003) Mol. Cell. Biol , vol.23 , pp. 6769-6779
    • Harvey, K.J.1    Newport, J.2
  • 13
    • 0026550509 scopus 로고
    • Plasmid replication in Xenopus eggs and egg extracts: A 2D gel electrophoretic analysis
    • Hyrien, O., and M. Mechali. 1992. Plasmid replication in Xenopus eggs and egg extracts: a 2D gel electrophoretic analysis. Nucleic Acids Res. 20:1463-1469.
    • (1992) Nucleic Acids Res , vol.20 , pp. 1463-1469
    • Hyrien, O.1    Mechali, M.2
  • 14
    • 0027370672 scopus 로고
    • Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos
    • Hyrien, O., and M. Mechali. 1993. Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos. EMBO J. 12:4511-4520.
    • (1993) EMBO J , vol.12 , pp. 4511-4520
    • Hyrien, O.1    Mechali, M.2
  • 15
    • 0028829358 scopus 로고
    • Transition in specification of embryonic metazoan DNA replication origins
    • Hyrien, O., C. Marie, and M. Mechali. 1995. Transition in specification of embryonic metazoan DNA replication origins. Science 270:994-997.
    • (1995) Science , vol.270 , pp. 994-997
    • Hyrien, O.1    Marie, C.2    Mechali, M.3
  • 16
    • 0035158487 scopus 로고    scopus 로고
    • Site-specific DNA binding of the Schizosaccharomyces pombe origin recognition complex is determined by the Orc4 subunit
    • Kong, D., and M. L. DePamphilis. 2001. Site-specific DNA binding of the Schizosaccharomyces pombe origin recognition complex is determined by the Orc4 subunit. Mol. Cell. Biol. 21:8095-8103.
    • (2001) Mol. Cell. Biol , vol.21 , pp. 8095-8103
    • Kong, D.1    DePamphilis, M.L.2
  • 17
    • 0037587580 scopus 로고    scopus 로고
    • Xenopus origin recognition complex (ORC) initiates DNA replication preferentially at sequences targeted by Schizosaccharomyces pombe ORC
    • Kong, D., T. R. Coleman, and M. L. DePamphilis. 2003. Xenopus origin recognition complex (ORC) initiates DNA replication preferentially at sequences targeted by Schizosaccharomyces pombe ORC. EMBO J. 22:3441-3450.
    • (2003) EMBO J , vol.22 , pp. 3441-3450
    • Kong, D.1    Coleman, T.R.2    DePamphilis, M.L.3
  • 18
    • 0020401041 scopus 로고
    • Replication origins in the Xenopus egg
    • Laskey, R. A., and R. M. Harland. 1982. Replication origins in the Xenopus egg. Cell 31:503.
    • (1982) Cell , vol.31 , pp. 503
    • Laskey, R.A.1    Harland, R.M.2
  • 19
    • 28344440877 scopus 로고    scopus 로고
    • Mitotic remodeling of the replicon and chromosome structure
    • Lemaitre, J. M., E. Danis, P. Pasero, Y. Vassetzky, and M. Mechali. 2005. Mitotic remodeling of the replicon and chromosome structure. Cell 123:787-801.
    • (2005) Cell , vol.123 , pp. 787-801
    • Lemaitre, J.M.1    Danis, E.2    Pasero, P.3    Vassetzky, Y.4    Mechali, M.5
  • 20
    • 0035923508 scopus 로고    scopus 로고
    • Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein
    • Lee, J. K., K. Y. Moon, Y. Jiang, and J. Hurwitz. 2001. Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein. Proc. Natl. Acad. Sci. USA 98:13589-13594.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 13589-13594
    • Lee, J.K.1    Moon, K.Y.2    Jiang, Y.3    Hurwitz, J.4
  • 21
    • 0034106643 scopus 로고    scopus 로고
    • Selective activation of pre-replication complexes in vitro at specific sites in mammalian nuclei
    • Li, C. J., J. A. Bogan, D. A. Natale, and M. L. DePamphilis. 2000. Selective activation of pre-replication complexes in vitro at specific sites in mammalian nuclei. J. Cell Sci. 113:887-898.
    • (2000) J. Cell Sci , vol.113 , pp. 887-898
    • Li, C.J.1    Bogan, J.A.2    Natale, D.A.3    DePamphilis, M.L.4
  • 22
    • 0037599235 scopus 로고    scopus 로고
    • Dynamic alterations of replication timing in mammalian cells
    • Lin, C. M., H. Fu, M. Martinovsky, E. Bouhassira, and M. I. Aladjem. 2003. Dynamic alterations of replication timing in mammalian cells. Curr. Biol. 13:1019-1028.
    • (2003) Curr. Biol , vol.13 , pp. 1019-1028
    • Lin, C.M.1    Fu, H.2    Martinovsky, M.3    Bouhassira, E.4    Aladjem, M.I.5
  • 23
    • 0034711945 scopus 로고    scopus 로고
    • Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos
    • Lucas, I., M. Chevrier-Miller, J. M. Sogo, and O. Hyrien. 2000. Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos. J. Mol. Biol. 296:769-786.
    • (2000) J. Mol. Biol , vol.296 , pp. 769-786
    • Lucas, I.1    Chevrier-Miller, M.2    Sogo, J.M.3    Hyrien, O.4
  • 24
    • 10644297436 scopus 로고    scopus 로고
    • Coordination of replication and transcription along a Drosophila chromosome
    • MacAlpine, D. M., H. K. Rodriguez, and S. P. Bell. 2004. Coordination of replication and transcription along a Drosophila chromosome. Genes Dev. 18:3094-3105.
    • (2004) Genes Dev , vol.18 , pp. 3094-3105
    • MacAlpine, D.M.1    Rodriguez, H.K.2    Bell, S.P.3
  • 25
    • 0026520626 scopus 로고
    • DNA replication initiates at multiple sites on plasmid DNA in Xenopus egg extracts
    • Mahbubani, H. M., T. Pauli, J. K. Elder, and J. J. Blow. 1992. DNA replication initiates at multiple sites on plasmid DNA in Xenopus egg extracts. Nucleic Acids Res. 20:1457-1462.
    • (1992) Nucleic Acids Res , vol.20 , pp. 1457-1462
    • Mahbubani, H.M.1    Pauli, T.2    Elder, J.K.3    Blow, J.J.4
  • 26
    • 0026508417 scopus 로고
    • A yeast chromosomal origin of DNA replication defined by multiple functional elements
    • Marahrens, Y., and B. Stillman. 1992. A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science 255:817-823.
    • (1992) Science , vol.255 , pp. 817-823
    • Marahrens, Y.1    Stillman, B.2
  • 27
    • 0021056749 scopus 로고
    • Tumor promoter TPA increases initiation of replication on DNA injected into Xenopus eggs
    • Mechali, M., F. Mechali, and R. A. Laskey. 1983. Tumor promoter TPA increases initiation of replication on DNA injected into Xenopus eggs. Cell 35:63-69.
    • (1983) Cell , vol.35 , pp. 63-69
    • Mechali, M.1    Mechali, F.2    Laskey, R.A.3
  • 28
    • 0021714731 scopus 로고
    • Lack of specific sequence requirement for DNA replication in Xenopus eggs compared with high sequence specificity in yeast
    • Mechali, M., and S. Kearsey. 1984. Lack of specific sequence requirement for DNA replication in Xenopus eggs compared with high sequence specificity in yeast. Cell 38:55-64.
    • (1984) Cell , vol.38 , pp. 55-64
    • Mechali, M.1    Kearsey, S.2
  • 29
    • 0035430416 scopus 로고    scopus 로고
    • DNA replication origins: From sequence specificity to epigentics
    • Mechali, M. 2001. DNA replication origins: from sequence specificity to epigentics. Nat. Rev. Genet. 2:640-645.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 640-645
    • Mechali, M.1
  • 30
    • 0003037938 scopus 로고    scopus 로고
    • DNA replication and chromatin assembly using Xenopus egg extracts
    • J. D. Richter ed, Oxford University Press, Oxford, United Kingdom
    • Menut, S., J. M. Lemaitre, A. Hair, and M. Mechali. 1999. DNA replication and chromatin assembly using Xenopus egg extracts, p. 196-226. In J. D. Richter (ed.), Advances in molecular biology. Oxford University Press, Oxford, United Kingdom.
    • (1999) Advances in molecular biology , pp. 196-226
    • Menut, S.1    Lemaitre, J.M.2    Hair, A.3    Mechali, M.4
  • 32
    • 0023667788 scopus 로고
    • Nuclear reconstitution in vitro: Stages of assembly around protein-free DNA
    • Newport, J. 1987. Nuclear reconstitution in vitro: stages of assembly around protein-free DNA. Cell 48:205-217.
    • (1987) Cell , vol.48 , pp. 205-217
    • Newport, J.1
  • 33
    • 0032822630 scopus 로고    scopus 로고
    • Clustered adenine/thymine stretches are essential for function of a fission yeast replication origin
    • Okuno, Y., H. Satoh, M. Sekiguchi, and H. Masukata. 1999. Clustered adenine/thymine stretches are essential for function of a fission yeast replication origin. Mol. Cell. Biol. 19:6699-6709.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 6699-6709
    • Okuno, Y.1    Satoh, H.2    Sekiguchi, M.3    Masukata, H.4
  • 34
    • 0036791653 scopus 로고    scopus 로고
    • Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus
    • Pasero, P., A. Bensimon, and E. Schwob. 2002. Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus. Genes Dev. 16:2479-2484.
    • (2002) Genes Dev , vol.16 , pp. 2479-2484
    • Pasero, P.1    Bensimon, A.2    Schwob, E.3
  • 36
    • 1842509904 scopus 로고    scopus 로고
    • DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding
    • Remus, D., E. L. Beall, and M. R. Botchan. 2004. DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding. EMBO J. 23:897-907.
    • (2004) EMBO J , vol.23 , pp. 897-907
    • Remus, D.1    Beall, E.L.2    Botchan, M.R.3
  • 37
    • 0032906460 scopus 로고    scopus 로고
    • Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster
    • Sasaki, T., T. Sawado, M. Yamaguchi, and T. Shinomiya. 1999. Specification of regions of DNA replication initiation during embryogenesis in the 65-kilobase DNApolalpha-dE2F locus of Drosophila melanogaster. Mol. Cell. Biol. 19:547-555.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 547-555
    • Sasaki, T.1    Sawado, T.2    Yamaguchi, M.3    Shinomiya, T.4
  • 38
    • 0346873031 scopus 로고    scopus 로고
    • Segurado, M., A. de Luis, and F. Antequera. 2003. Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep. 4:1048-1053.
    • Segurado, M., A. de Luis, and F. Antequera. 2003. Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep. 4:1048-1053.
  • 39
    • 0242353369 scopus 로고    scopus 로고
    • In vitro protein-DNA interactions at the human lamin B2 replication origin
    • Stefanovic, D., S. Stanojcic, A. Vindigni, A. Ochem, and A. Falaschi. 2003. In vitro protein-DNA interactions at the human lamin B2 replication origin. J. Biol. Chem. 278:42737-42743.
    • (2003) J. Biol. Chem , vol.278 , pp. 42737-42743
    • Stefanovic, D.1    Stanojcic, S.2    Vindigni, A.3    Ochem, A.4    Falaschi, A.5
  • 40
    • 0034763194 scopus 로고    scopus 로고
    • Interaction of fission yeast ORC with essential adenine/thymine stretches in replication origins
    • Takahashi, T., and H. Masukata. 2001. Interaction of fission yeast ORC with essential adenine/thymine stretches in replication origins. Genes Cells 6:837-849.
    • (2001) Genes Cells , vol.6 , pp. 837-849
    • Takahashi, T.1    Masukata, H.2
  • 41
    • 0042125189 scopus 로고    scopus 로고
    • Sequence-independent DNA binding and replication initiation by the human origin recognition complex
    • Vashee, S., C. Cvetic, W. Lu, P. Simancek, T. J. Kelly, and J. C. Walter. 2003. Sequence-independent DNA binding and replication initiation by the human origin recognition complex. Genes Dev. 17:1894-1908.
    • (2003) Genes Dev , vol.17 , pp. 1894-1908
    • Vashee, S.1    Cvetic, C.2    Lu, W.3    Simancek, P.4    Kelly, T.J.5    Walter, J.C.6
  • 42
    • 0031037467 scopus 로고    scopus 로고
    • Regulation of replicon size in Xenopus egg extracts
    • Walter, J., and J. W. Newport. 1997. Regulation of replicon size in Xenopus egg extracts. Science 275:993-995.
    • (1997) Science , vol.275 , pp. 993-995
    • Walter, J.1    Newport, J.W.2
  • 43
    • 0033637837 scopus 로고    scopus 로고
    • Initiation of eukaryotic DNA replication: Origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase alpha
    • Walter, J., and J. W. Newport. 2000. Initiation of eukaryotic DNA replication: origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase alpha. Mol. Cell 5:617-627.
    • (2000) Mol. Cell , vol.5 , pp. 617-627
    • Walter, J.1    Newport, J.W.2
  • 44
    • 33747886684 scopus 로고    scopus 로고
    • Cooperative sequence modules determine replication initiation sites at the human beta-globin locus
    • Wang, L., C. M. Lin, J. O. Lopreiato, and M. I. Aladjem. 2006. Cooperative sequence modules determine replication initiation sites at the human beta-globin locus. Hum. Mol. Genet. 15:2613-2622.
    • (2006) Hum. Mol. Genet , vol.15 , pp. 2613-2622
    • Wang, L.1    Lin, C.M.2    Lopreiato, J.O.3    Aladjem, M.I.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.