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Volumn 6, Issue 1, 2010, Pages

Co-orientation of replication and transcription preserves genome integrity

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

EID: 76749094639     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000810     Document Type: Article
Times cited : (150)

References (90)
  • 1
    • 0019501853 scopus 로고
    • Growth-ratedependent regulation of ribosome synthesis in E. coli: Expression of the lacZ and galK genes fused to ribosomal promoters
    • Miura A, Krueger JH, Itoh S, de Boer HA, Nomura M (1981) Growth-ratedependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters. Cell 25: 773-782.
    • (1981) Cell , vol.25 , pp. 773-782
    • Miura, A.1    Krueger, J.H.2    Itoh, S.3    de Boer, H.A.4    Nomura, M.5
  • 2
    • 0029820872 scopus 로고    scopus 로고
    • rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli
    • Gourse RL, Gaal T, Bartlett MS, Appleman JA, Ross W (1996) rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli. Annu Rev Microbiol 50: 645-677.
    • (1996) Annu Rev Microbiol , vol.50 , pp. 645-677
    • Gourse, R.L.1    Gaal, T.2    Bartlett, M.S.3    Appleman, J.A.4    Ross, W.5
  • 3
    • 0000640710 scopus 로고    scopus 로고
    • Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate
    • Neidhardt FC, Curtiss RI, Ingraham JL, Lin ECC, Low KB, et al, eds, Washington, DC: ASM Press. pp
    • Bremer H, Dennis P (1996) Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate. In: Neidhardt FC, Curtiss RI, Ingraham JL, Lin ECC, Low KB, et al, eds. Escherichia coli and Salmonella: Cellular and Molecular Biology. Washington, DC: ASM Press. pp 1553-1569.
    • (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology , pp. 1553-1569
    • Bremer, H.1    Dennis, P.2
  • 4
    • 0014413357 scopus 로고
    • Chromosome replication and the division cycle of Escherichia coli B/r
    • Cooper S, Helmstetter CE (1968) Chromosome replication and the division cycle of Escherichia coli B/r. J Mol Biol 31: 519-540.
    • (1968) J Mol Biol , vol.31 , pp. 519-540
    • Cooper, S.1    Helmstetter, C.E.2
  • 5
    • 0026733965 scopus 로고
    • Consequences of replication fork movement through transcription units in vivo
    • French S (1992) Consequences of replication fork movement through transcription units in vivo. Science 258: 1362-1365.
    • (1992) Science , vol.258 , pp. 1362-1365
    • French, S.1
  • 6
    • 57649129186 scopus 로고    scopus 로고
    • The replisome uses mRNA as a primer after colliding with RNA polymerase
    • Pomerantz RT, O'Donnell M (2008) The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature 456: 762-766.
    • (2008) Nature , vol.456 , pp. 762-766
    • Pomerantz, R.T.1    O'Donnell, M.2
  • 7
    • 66049138588 scopus 로고    scopus 로고
    • Replisome structure and conformational dynamics underlie fork progression past obstacles
    • Yao NY, O'Donnell M (2009) Replisome structure and conformational dynamics underlie fork progression past obstacles. Curr Opin Cell Biol 21: 336-343.
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 336-343
    • Yao, N.Y.1    O'Donnell, M.2
  • 8
    • 33947432388 scopus 로고    scopus 로고
    • Replication fork stalling at natural impediments
    • Mirkin EV, Mirkin SM (2007) Replication fork stalling at natural impediments. Microbiol Mol Biol Rev 71: 13-35.
    • (2007) Microbiol Mol Biol Rev , vol.71 , pp. 13-35
    • Mirkin, E.V.1    Mirkin, S.M.2
  • 9
    • 58449118337 scopus 로고    scopus 로고
    • The organization of the bacterial genome
    • Rocha EP (2008) The organization of the bacterial genome. Annu Rev Genet 42: 211-233.
    • (2008) Annu Rev Genet , vol.42 , pp. 211-233
    • Rocha, E.P.1
  • 10
    • 0028908039 scopus 로고
    • Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex
    • Liu B, Alberts BM (1995) Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex. Science 267: 1131-1137.
    • (1995) Science , vol.267 , pp. 1131-1137
    • Liu, B.1    Alberts, B.M.2
  • 11
    • 0029740114 scopus 로고    scopus 로고
    • DNA replication fork pause sites dependent on transcription
    • Deshpande AM, Newlon CS (1996) DNA replication fork pause sites dependent on transcription. Science 272: 1030-1033.
    • (1996) Science , vol.272 , pp. 1030-1033
    • Deshpande, A.M.1    Newlon, C.S.2
  • 12
    • 0033570150 scopus 로고    scopus 로고
    • Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation
    • Elias-Arnanz M, Salas M (1999) Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation. Embo J 18: 5675-5682.
    • (1999) Embo J , vol.18 , pp. 5675-5682
    • Elias-Arnanz, M.1    Salas, M.2
  • 13
    • 67449113551 scopus 로고    scopus 로고
    • Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae
    • Azvolinsky A, Giresi PG, Lieb JD, Zakian VA (2009) Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae. Mol Cell 34: 722-734.
    • (2009) Mol Cell , vol.34 , pp. 722-734
    • Azvolinsky, A.1    Giresi, P.G.2    Lieb, J.D.3    Zakian, V.A.4
  • 14
    • 33645823661 scopus 로고    scopus 로고
    • Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex
    • Wellinger RE, Prado F, Aguilera A (2006) Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex. Mol Cell Biol 26: 3327-3334.
    • (2006) Mol Cell Biol , vol.26 , pp. 3327-3334
    • Wellinger, R.E.1    Prado, F.2    Aguilera, A.3
  • 15
    • 22544464455 scopus 로고    scopus 로고
    • RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription
    • Trautinger BW, Jaktaji RP, Rusakova E, Lloyd RG (2005) RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription. Mol Cell 19: 247-258.
    • (2005) Mol Cell , vol.19 , pp. 247-258
    • Trautinger, B.W.1    Jaktaji, R.P.2    Rusakova, E.3    Lloyd, R.G.4
  • 17
    • 0024276903 scopus 로고
    • When polymerases collide: Replication and the transcriptional organization of the E. coli chromosome
    • Brewer BJ (1988) When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell 53: 679-686.
    • (1988) Cell , vol.53 , pp. 679-686
    • Brewer, B.J.1
  • 18
    • 3142679507 scopus 로고    scopus 로고
    • The replication-related organization of bacterial genomes
    • Rocha EP (2004) The replication-related organization of bacterial genomes. Microbiology 150: 1609-1627.
    • (2004) Microbiology , vol.150 , pp. 1609-1627
    • Rocha, E.P.1
  • 19
    • 0042667165 scopus 로고    scopus 로고
    • Essentiality, not expressiveness, drives gene-strand bias in bacteria
    • Rocha EP, Danchin A (2003) Essentiality, not expressiveness, drives gene-strand bias in bacteria. Nat Genet 34: 377-378.
    • (2003) Nat Genet , vol.34 , pp. 377-378
    • Rocha, E.P.1    Danchin, A.2
  • 20
    • 5444276316 scopus 로고    scopus 로고
    • Genometric analyses of the organization of circular chromosomes: A universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication
    • Guy L, Roten CA (2004) Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication. Gene 340: 45-52.
    • (2004) Gene , vol.340 , pp. 45-52
    • Guy, L.1    Roten, C.A.2
  • 21
    • 0020085937 scopus 로고
    • Chromosomal locations of the genes for rRNA in Escherichia coli K-12
    • Ellwood M, Nomura M (1982) Chromosomal locations of the genes for rRNA in Escherichia coli K-12. J Bacteriol 149: 458-468.
    • (1982) J Bacteriol , vol.149 , pp. 458-468
    • Ellwood, M.1    Nomura, M.2
  • 22
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the gram-positive bacterium Bacillus subtilis
    • Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390: 249-256.
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1    Ogasawara, N.2    Moszer, I.3    Albertini, A.M.4    Alloni, G.5
  • 24
    • 0036709941 scopus 로고    scopus 로고
    • Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
    • Rocha E (2002) Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? Trends Microbiol 10: 393-395.
    • (2002) Trends Microbiol , vol.10 , pp. 393-395
    • Rocha, E.1
  • 25
    • 0025310941 scopus 로고
    • Orientation of genes in the Bacillus subtilis chromosome
    • Zeigler DR, Dean DH (1990) Orientation of genes in the Bacillus subtilis chromosome. Genetics 125: 703-708.
    • (1990) Genetics , vol.125 , pp. 703-708
    • Zeigler, D.R.1    Dean, D.H.2
  • 26
    • 0024291357 scopus 로고
    • A replication fork barrier at the 39 end of yeast ribosomal RNA genes
    • Brewer BJ, Fangman WL (1988) A replication fork barrier at the 39 end of yeast ribosomal RNA genes. Cell 55: 637-643.
    • (1988) Cell , vol.55 , pp. 637-643
    • Brewer, B.J.1    Fangman, W.L.2
  • 27
    • 20444485193 scopus 로고    scopus 로고
    • Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication
    • Price MN, Alm EJ, Arkin AP (2005) Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication. Nucleic Acids Res 33: 3224-3234.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3224-3234
    • Price, M.N.1    Alm, E.J.2    Arkin, A.P.3
  • 28
    • 34548396264 scopus 로고    scopus 로고
    • Human gene organization driven by the coordination of replication and transcription
    • Huvet M, Nicolay S, Touchon M, Audit B, d'Aubenton-Carafa Y, et al. (2007) Human gene organization driven by the coordination of replication and transcription. Genome Res 17: 1278-1285.
    • (2007) Genome Res , vol.17 , pp. 1278-1285
    • Huvet, M.1    Nicolay, S.2    Touchon, M.3    Audit, B.4    d'Aubenton-Carafa, Y.5
  • 29
    • 8844263096 scopus 로고    scopus 로고
    • Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication
    • Omont N, Kepes F (2004) Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication. Bioinformatics 20: 2719-2725.
    • (2004) Bioinformatics , vol.20 , pp. 2719-2725
    • Omont, N.1    Kepes, F.2
  • 30
    • 12844265439 scopus 로고    scopus 로고
    • Mechanisms of transcription-replication collisions in bacteria
    • Mirkin EV, Mirkin SM (2005) Mechanisms of transcription-replication collisions in bacteria. Mol Cell Biol 25: 888-895.
    • (2005) Mol Cell Biol , vol.25 , pp. 888-895
    • Mirkin, E.V.1    Mirkin, S.M.2
  • 31
    • 34248394295 scopus 로고    scopus 로고
    • Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
    • Wang JD, Berkmen MB, Grossman AD (2007) Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. Proc Natl Acad Sci U S A 104: 5608-5613.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 5608-5613
    • Wang, J.D.1    Berkmen, M.B.2    Grossman, A.D.3
  • 32
    • 17144426028 scopus 로고    scopus 로고
    • Impairment of replication fork progression mediates RNA polII transcription-associated recombination
    • Prado F, Aguilera A (2005) Impairment of replication fork progression mediates RNA polII transcription-associated recombination. Embo J 24: 1267-1276.
    • (2005) Embo J , vol.24 , pp. 1267-1276
    • Prado, F.1    Aguilera, A.2
  • 33
    • 1642417690 scopus 로고    scopus 로고
    • Local chromatin structure at the ribosomal DNA causes replication fork pausing and genome instability in the absence of the S. cerevisiae DNA helicase Rrm3p
    • Torres JZ, Bessler JB, Zakian VA (2004) Local chromatin structure at the ribosomal DNA causes replication fork pausing and genome instability in the absence of the S. cerevisiae DNA helicase Rrm3p. Genes Dev 18: 498-503.
    • (2004) Genes Dev , vol.18 , pp. 498-503
    • Torres, J.Z.1    Bessler, J.B.2    Zakian, V.A.3
  • 34
    • 0029805686 scopus 로고    scopus 로고
    • Transcription-induced deletions in plasmid vectors: M13 DNA replication as a source of instability
    • Vilette D, Ehrlich SD, Michel B (1996) Transcription-induced deletions in plasmid vectors: M13 DNA replication as a source of instability. Mol Gen Genet 252: 398-403.
    • (1996) Mol Gen Genet , vol.252 , pp. 398-403
    • Vilette, D.1    Ehrlich, S.D.2    Michel, B.3
  • 35
    • 34547789312 scopus 로고    scopus 로고
    • Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication
    • Kim N, Abdulovic AL, Gealy R, Lippert MJ, Jinks-Robertson S (2007) Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication. DNA Repair (Amst) 6: 1285-1296.
    • (2007) DNA Repair (Amst) , vol.6 , pp. 1285-1296
    • Kim, N.1    Abdulovic, A.L.2    Gealy, R.3    Lippert, M.J.4    Jinks-Robertson, S.5
  • 36
    • 0037195084 scopus 로고    scopus 로고
    • Does RNA polymerase help drive chromosome segregation in bacteria?
    • Dworkin J, Losick R (2002) Does RNA polymerase help drive chromosome segregation in bacteria? Proc Natl Acad Sci U S A 99: 14089-14094.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14089-14094
    • Dworkin, J.1    Losick, R.2
  • 38
    • 37749029027 scopus 로고    scopus 로고
    • Chromosome structuring limits genome plasticity in Escherichia coli
    • Esnault E, Valens M, Espeli O, Boccard F (2007) Chromosome structuring limits genome plasticity in Escherichia coli. PLoS Genet 3: e226.
    • (2007) PLoS Genet , vol.3
    • Esnault, E.1    Valens, M.2    Espeli, O.3    Boccard, F.4
  • 39
    • 58149142956 scopus 로고    scopus 로고
    • Lesterlin C, Pages C, Dubarry N, Dasgupta S, Cornet F (2008) Asymmetry of chromosome Replichores renders the DNA translocase activity of FtsK essential for cell division and cell shape maintenance in Escherichia coli. PLoS Genet 4: e1000288.
    • Lesterlin C, Pages C, Dubarry N, Dasgupta S, Cornet F (2008) Asymmetry of chromosome Replichores renders the DNA translocase activity of FtsK essential for cell division and cell shape maintenance in Escherichia coli. PLoS Genet 4: e1000288.
  • 40
    • 33845716783 scopus 로고    scopus 로고
    • Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the replication initiator DnaA
    • Berkmen MB, Grossman AD (2007) Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the replication initiator DnaA. Mol Microbiol 63: 150-165.
    • (2007) Mol Microbiol , vol.63 , pp. 150-165
    • Berkmen, M.B.1    Grossman, A.D.2
  • 41
    • 0014148110 scopus 로고
    • Characterization of a temperature-sensitive mutant of Bacillus subtilis defective in deoxyribonucleic acid replication
    • Mendelson NH, Gross JD (1967) Characterization of a temperature-sensitive mutant of Bacillus subtilis defective in deoxyribonucleic acid replication. J Bacteriol 94: 1603-1608.
    • (1967) J Bacteriol , vol.94 , pp. 1603-1608
    • Mendelson, N.H.1    Gross, J.D.2
  • 42
    • 0014724607 scopus 로고
    • Isolation and genetic analysis of temperature-sensitive mutants of B. subtilis defective in DNA synthesis
    • Karamata D, Gross JD (1970) Isolation and genetic analysis of temperature-sensitive mutants of B. subtilis defective in DNA synthesis. Mol Gen Genet 108: 277-287.
    • (1970) Mol Gen Genet , vol.108 , pp. 277-287
    • Karamata, D.1    Gross, J.D.2
  • 43
    • 15244359893 scopus 로고    scopus 로고
    • Independence of replisomes in Escherichia coli chromosomal replication
    • Breier AM, Weier HU, Cozzarelli NR (2005) Independence of replisomes in Escherichia coli chromosomal replication. Proc Natl Acad Sci U S A 102: 3942-3947.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 3942-3947
    • Breier, A.M.1    Weier, H.U.2    Cozzarelli, N.R.3
  • 44
    • 33847383586 scopus 로고    scopus 로고
    • Nutritional control of elongation of DNA replication by (p)ppGpp
    • Wang JD, Sanders GM, Grossman AD (2007) Nutritional control of elongation of DNA replication by (p)ppGpp. Cell 128: 865-875.
    • (2007) Cell , vol.128 , pp. 865-875
    • Wang, J.D.1    Sanders, G.M.2    Grossman, A.D.3
  • 45
    • 33846586523 scopus 로고    scopus 로고
    • Replication is required for the RecA localization response to DNA damage in Bacillus subtilis
    • Simmons LA, Grossman AD, Walker GC (2007) Replication is required for the RecA localization response to DNA damage in Bacillus subtilis. Proc Natl Acad Sci U S A 104: 1360-1365.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 1360-1365
    • Simmons, L.A.1    Grossman, A.D.2    Walker, G.C.3
  • 46
    • 34250344604 scopus 로고    scopus 로고
    • SOS induction in a subpopulation of structural maintenance of chromosome (Smc) mutant cells in Bacillus subtilis
    • Britton RA, Kuster-Schock E, Auchtung TA, Grossman AD (2007) SOS induction in a subpopulation of structural maintenance of chromosome (Smc) mutant cells in Bacillus subtilis. J Bacteriol 189: 4359-4366.
    • (2007) J Bacteriol , vol.189 , pp. 4359-4366
    • Britton, R.A.1    Kuster-Schock, E.2    Auchtung, T.A.3    Grossman, A.D.4
  • 47
    • 1842506691 scopus 로고    scopus 로고
    • Novel rpoB mutations conferring rifampin resistance on Bacillus subtilis: Global effects on growth, competence, sporulation, and germination
    • Maughan H, Galeano B, Nicholson WL (2004) Novel rpoB mutations conferring rifampin resistance on Bacillus subtilis: global effects on growth, competence, sporulation, and germination. J Bacteriol 186: 2481-2486.
    • (2004) J Bacteriol , vol.186 , pp. 2481-2486
    • Maughan, H.1    Galeano, B.2    Nicholson, W.L.3
  • 48
    • 0034540939 scopus 로고    scopus 로고
    • Mutations in the ss subunit of the Bacillus subtilis RNA polymerase that confer both rifampicin resistance and hypersensitivity to NusG
    • Ingham CJ, Furneaux PA (2000) Mutations in the ss subunit of the Bacillus subtilis RNA polymerase that confer both rifampicin resistance and hypersensitivity to NusG. Microbiology 146 Pt 12: 3041-3049.
    • (2000) Microbiology , vol.146 , Issue.PART 12 , pp. 3041-3049
    • Ingham, C.J.1    Furneaux, P.A.2
  • 49
    • 0034006621 scopus 로고    scopus 로고
    • Determining mutation rates in bacterial populations
    • Rosche WA, Foster PL (2000) Determining mutation rates in bacterial populations. Methods 20: 4-17.
    • (2000) Methods , vol.20 , pp. 4-17
    • Rosche, W.A.1    Foster, P.L.2
  • 50
    • 0030150662 scopus 로고    scopus 로고
    • A method to invert DNA segments of the Bacillus subtilis 168 genome by recombination between two homologous sequences
    • Toda T, Tanaka T, Itaya M (1996) A method to invert DNA segments of the Bacillus subtilis 168 genome by recombination between two homologous sequences. Biosci Biotechnol Biochem 60: 773-778.
    • (1996) Biosci Biotechnol Biochem , vol.60 , pp. 773-778
    • Toda, T.1    Tanaka, T.2    Itaya, M.3
  • 51
    • 0023750111 scopus 로고
    • Rearrangement of the bacterial chromosome: Forbidden inversions
    • Segall A, Mahan MJ, Roth JR (1988) Rearrangement of the bacterial chromosome: forbidden inversions. Science 241: 1314-1318.
    • (1988) Science , vol.241 , pp. 1314-1318
    • Segall, A.1    Mahan, M.J.2    Roth, J.R.3
  • 52
    • 0042237296 scopus 로고
    • Detection and possible role of two large nondivisible zones on the Escherichia coli chromosome
    • Rebollo JE, Francois V, Louarn JM (1988) Detection and possible role of two large nondivisible zones on the Escherichia coli chromosome. Proc Natl Acad Sci U S A 85: 9391-9395.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 9391-9395
    • Rebollo, J.E.1    Francois, V.2    Louarn, J.M.3
  • 53
    • 0017395108 scopus 로고
    • Method for the isolation of Escherichia coli mutants with enhanced recombination between chromosomal duplications
    • Konrad EB (1977) Method for the isolation of Escherichia coli mutants with enhanced recombination between chromosomal duplications. J Bacteriol 130: 167-172.
    • (1977) J Bacteriol , vol.130 , pp. 167-172
    • Konrad, E.B.1
  • 54
    • 0024060034 scopus 로고
    • Effects of chromosomal inversion on cell fitness in Escherichia coli K-12
    • Hill CW, Gray JA (1988) Effects of chromosomal inversion on cell fitness in Escherichia coli K-12. Genetics 119: 771-778.
    • (1988) Genetics , vol.119 , pp. 771-778
    • Hill, C.W.1    Gray, J.A.2
  • 56
    • 22144463194 scopus 로고    scopus 로고
    • Roles for replichores and macrodomains in segregation of the Escherichia coli chromosome
    • Lesterlin C, Mercier R, Boccard F, Barre FX, Cornet F (2005) Roles for replichores and macrodomains in segregation of the Escherichia coli chromosome. EMBO Rep 6: 557-562.
    • (2005) EMBO Rep , vol.6 , pp. 557-562
    • Lesterlin, C.1    Mercier, R.2    Boccard, F.3    Barre, F.X.4    Cornet, F.5
  • 57
    • 0034568798 scopus 로고    scopus 로고
    • Evidence for symmetric chromosomal inversions around the replication origin in bacteria
    • RESEARCH0011
    • Eisen JA, Heidelberg JF, White O, Salzberg SL (2000) Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol 1: RESEARCH0011.
    • (2000) Genome Biol , vol.1
    • Eisen, J.A.1    Heidelberg, J.F.2    White, O.3    Salzberg, S.L.4
  • 59
    • 0031458777 scopus 로고    scopus 로고
    • Test of synergistic interactions among deleterious mutations in bacteria
    • Elena SF, Lenski RE (1997) Test of synergistic interactions among deleterious mutations in bacteria. Nature 390: 395-398.
    • (1997) Nature , vol.390 , pp. 395-398
    • Elena, S.F.1    Lenski, R.E.2
  • 60
    • 0016792854 scopus 로고
    • The effect of gene concentration and relative gene dosage on gene output in Escherichia coli
    • Chandler MG, Pritchard RH (1975) The effect of gene concentration and relative gene dosage on gene output in Escherichia coli. Mol Gen Genet 138: 127-141.
    • (1975) Mol Gen Genet , vol.138 , pp. 127-141
    • Chandler, M.G.1    Pritchard, R.H.2
  • 61
    • 65549149524 scopus 로고    scopus 로고
    • Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation
    • Sullivan NL, Marquis KA, Rudner DZ (2009) Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation. Cell 137: 697-707.
    • (2009) Cell , vol.137 , pp. 697-707
    • Sullivan, N.L.1    Marquis, K.A.2    Rudner, D.Z.3
  • 62
    • 65549135760 scopus 로고    scopus 로고
    • Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis
    • Gruber S, Errington J (2009) Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis. Cell 137: 685-696.
    • (2009) Cell , vol.137 , pp. 685-696
    • Gruber, S.1    Errington, J.2
  • 63
    • 0032489548 scopus 로고    scopus 로고
    • Identification and characterization of a bacterial chromosome partitioning site
    • Lin DC, Grossman AD (1998) Identification and characterization of a bacterial chromosome partitioning site. Cell 92: 675-685.
    • (1998) Cell , vol.92 , pp. 675-685
    • Lin, D.C.1    Grossman, A.D.2
  • 64
    • 0041669435 scopus 로고    scopus 로고
    • Control of rRNA expression by small molecules is dynamic and nonredundant
    • Murray HD, Schneider DA, Gourse RL (2003) Control of rRNA expression by small molecules is dynamic and nonredundant. Mol Cell 12: 125-134.
    • (2003) Mol Cell , vol.12 , pp. 125-134
    • Murray, H.D.1    Schneider, D.A.2    Gourse, R.L.3
  • 67
    • 0036965964 scopus 로고    scopus 로고
    • DNA knotting caused by head-on collision of transcription and replication
    • Olavarrieta L, Hernandez P, Krimer DB, Schvartzman JB (2002) DNA knotting caused by head-on collision of transcription and replication. J Mol Biol 322: 1-6.
    • (2002) J Mol Biol , vol.322 , pp. 1-6
    • Olavarrieta, L.1    Hernandez, P.2    Krimer, D.B.3    Schvartzman, J.B.4
  • 68
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu LF, Wang JC (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A 84: 7024-7027.
    • (1987) Proc Natl Acad Sci U S A , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 69
    • 33745743449 scopus 로고    scopus 로고
    • Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo
    • Possoz C, Filipe SR, Grainge I, Sherratt DJ (2006) Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo. Embo J 25: 2596-2604.
    • (2006) Embo J , vol.25 , pp. 2596-2604
    • Possoz, C.1    Filipe, S.R.2    Grainge, I.3    Sherratt, D.J.4
  • 70
    • 0017685320 scopus 로고
    • DNA repair in Bacillus subtilis. I. The presence of an inducible system
    • Yasbin RE (1977) DNA repair in Bacillus subtilis. I. The presence of an inducible system. Mol Gen Genet 153: 211-218.
    • (1977) Mol Gen Genet , vol.153 , pp. 211-218
    • Yasbin, R.E.1
  • 71
    • 60849101060 scopus 로고    scopus 로고
    • Comparison of responses to double-strand breaks between Escherichia coli and Bacillus subtilis reveals different requirements for SOS induction
    • Simmons LA, Goranov AI, Kobayashi H, Davies BW, Yuan DS, et al. (2009) Comparison of responses to double-strand breaks between Escherichia coli and Bacillus subtilis reveals different requirements for SOS induction. J Bacteriol 191: 1152-1161.
    • (2009) J Bacteriol , vol.191 , pp. 1152-1161
    • Simmons, L.A.1    Goranov, A.I.2    Kobayashi, H.3    Davies, B.W.4    Yuan, D.S.5
  • 72
    • 0028998597 scopus 로고
    • Collapse and repair of replication forks in Escherichia coli
    • Kuzminov A (1995) Collapse and repair of replication forks in Escherichia coli. Mol Microbiol 16: 373-384.
    • (1995) Mol Microbiol , vol.16 , pp. 373-384
    • Kuzminov, A.1
  • 73
    • 0037099681 scopus 로고    scopus 로고
    • Replication fork collapse at replication terminator sequences
    • Bidnenko V, Ehrlich SD, Michel B (2002) Replication fork collapse at replication terminator sequences. Embo J 21: 3898-3907.
    • (2002) Embo J , vol.21 , pp. 3898-3907
    • Bidnenko, V.1    Ehrlich, S.D.2    Michel, B.3
  • 74
    • 33645055663 scopus 로고    scopus 로고
    • Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes
    • Couturier E, Rocha EP (2006) Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes. Mol Microbiol 59: 1506-1518.
    • (2006) Mol Microbiol , vol.59 , pp. 1506-1518
    • Couturier, E.1    Rocha, E.P.2
  • 75
    • 0030902447 scopus 로고    scopus 로고
    • Enhanced deletion formation by aberrant DNA replication in Escherichia coli
    • Saveson CJ, Lovett ST (1997) Enhanced deletion formation by aberrant DNA replication in Escherichia coli. Genetics 146: 457-470.
    • (1997) Genetics , vol.146 , pp. 457-470
    • Saveson, C.J.1    Lovett, S.T.2
  • 76
    • 24944477416 scopus 로고    scopus 로고
    • A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation
    • Ponder RG, Fonville NC, Rosenberg SM (2005) A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation. Mol Cell 19: 791-804.
    • (2005) Mol Cell , vol.19 , pp. 791-804
    • Ponder, R.G.1    Fonville, N.C.2    Rosenberg, S.M.3
  • 77
    • 67650831457 scopus 로고    scopus 로고
    • The active form of DNA polymerase V is UmuD'2C-RecA-ATP
    • Jiang Q, Karata K, Woodgate R, Cox MM, Goodman MF (2009) The active form of DNA polymerase V is UmuD'2C-RecA-ATP. Nature 460: 359-363.
    • (2009) Nature , vol.460 , pp. 359-363
    • Jiang, Q.1    Karata, K.2    Woodgate, R.3    Cox, M.M.4    Goodman, M.F.5
  • 78
    • 2942614909 scopus 로고    scopus 로고
    • Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs
    • Reimers JM, Schmidt KH, Longacre A, Reschke DK, Wright BE (2004) Increased transcription rates correlate with increased reversion rates in leuB and argH Escherichia coli auxotrophs. Microbiology 150: 1457-1466.
    • (2004) Microbiology , vol.150 , pp. 1457-1466
    • Reimers, J.M.1    Schmidt, K.H.2    Longacre, A.3    Reschke, D.K.4    Wright, B.E.5
  • 79
    • 0033608998 scopus 로고    scopus 로고
    • Hypermutation in derepressed operons of Escherichia coli K12
    • Wright BE, Longacre A, Reimers JM (1999) Hypermutation in derepressed operons of Escherichia coli K12. Proc Natl Acad Sci U S A 96: 5089-5094.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 5089-5094
    • Wright, B.E.1    Longacre, A.2    Reimers, J.M.3
  • 80
    • 33750461659 scopus 로고    scopus 로고
    • Novel role of mfd: Effects on stationary-phase mutagenesis in Bacillus subtilis
    • Ross C, Pybus C, Pedraza-Reyes M, Sung HM, Yasbin RE, et al. (2006) Novel role of mfd: effects on stationary-phase mutagenesis in Bacillus subtilis. J Bacteriol 188: 7512-7520.
    • (2006) J Bacteriol , vol.188 , pp. 7512-7520
    • Ross, C.1    Pybus, C.2    Pedraza-Reyes, M.3    Sung, H.M.4    Yasbin, R.E.5
  • 81
    • 39449096135 scopus 로고    scopus 로고
    • Genome instability: A mechanistic view of its causes and consequences
    • Aguilera A, Gomez-Gonzalez B (2008) Genome instability: a mechanistic view of its causes and consequences. Nat Rev Genet 9: 204-217.
    • (2008) Nat Rev Genet , vol.9 , pp. 204-217
    • Aguilera, A.1    Gomez-Gonzalez, B.2
  • 82
    • 58649088239 scopus 로고    scopus 로고
    • Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli
    • Cohen SE, Godoy VG, Walker GC (2009) Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli. J Bacteriol 191: 665-672.
    • (2009) J Bacteriol , vol.191 , pp. 665-672
    • Cohen, S.E.1    Godoy, V.G.2    Walker, G.C.3
  • 83
    • 0019168132 scopus 로고
    • Enzyme changes during Bacillus subtilis sporulation caused by deprivation of guanine nucleotides
    • Vasantha N, Freese E (1980) Enzyme changes during Bacillus subtilis sporulation caused by deprivation of guanine nucleotides. J Bacteriol 144: 1119-1125.
    • (1980) J Bacteriol , vol.144 , pp. 1119-1125
    • Vasantha, N.1    Freese, E.2
  • 85
    • 0017718533 scopus 로고
    • Alteration of the Bacillus subtilis glutamine synthetase results in overproduction of the enzyme
    • Dean DR, Hoch JA, Aronson AI (1977) Alteration of the Bacillus subtilis glutamine synthetase results in overproduction of the enzyme. J Bacteriol 131: 981-987.
    • (1977) J Bacteriol , vol.131 , pp. 981-987
    • Dean, D.R.1    Hoch, J.A.2    Aronson, A.I.3
  • 86
    • 0019252610 scopus 로고
    • Properties of Bacillus subtilis 168 derivatives freed of their natural prophages
    • Yasbin RE, Fields PI, Andersen BJ (1980) Properties of Bacillus subtilis 168 derivatives freed of their natural prophages. Gene 12: 155-159.
    • (1980) Gene , vol.12 , pp. 155-159
    • Yasbin, R.E.1    Fields, P.I.2    Andersen, B.J.3
  • 87
    • 24644481914 scopus 로고    scopus 로고
    • Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
    • Auchtung JM, Lee CA, Monson RE, Lehman AP, Grossman AD (2005) Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. Proc Natl Acad Sci U S A 102: 12554-12559.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 12554-12559
    • Auchtung, J.M.1    Lee, C.A.2    Monson, R.E.3    Lehman, A.P.4    Grossman, A.D.5
  • 88
    • 0036683053 scopus 로고    scopus 로고
    • A large dispersed chromosomal region required for chromosome segregation in sporulating cells of Bacillus subtilis
    • Wu LJ, Errington J (2002) A large dispersed chromosomal region required for chromosome segregation in sporulating cells of Bacillus subtilis. Embo J 21: 4001-4011.
    • (2002) Embo J , vol.21 , pp. 4001-4011
    • Wu, L.J.1    Errington, J.2
  • 89
    • 0002436360 scopus 로고
    • Methods for genetic manipulation, cloning, and functional analysis of sporulation genes in Bacillus subtilis
    • Smith I, Slepecky R, Setlow P, eds, Washington, D.C, American Society for Microbiology. pp
    • Youngman P, Poth H, Green B, York K, Olmedo G, et al. (1989) Methods for genetic manipulation, cloning, and functional analysis of sporulation genes in Bacillus subtilis. In: Smith I, Slepecky R, Setlow P, eds. Regulation of procaryotic development. Washington, D.C.: American Society for Microbiology. pp 65-87.
    • (1989) Regulation of procaryotic development , pp. 65-87
    • Youngman, P.1    Poth, H.2    Green, B.3    York, K.4    Olmedo, G.5
  • 90
    • 0024324770 scopus 로고
    • A neomycin resistance gene cassette selectable in a single copy state in the Bacillus subtilis chromosome
    • Itaya M, Kondo K, Tanaka T (1989) A neomycin resistance gene cassette selectable in a single copy state in the Bacillus subtilis chromosome. Nucleic Acids Res 17: 4410.
    • (1989) Nucleic Acids Res , vol.17 , pp. 4410
    • Itaya, M.1    Kondo, K.2    Tanaka, T.3


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