메뉴 건너뛰기




Volumn 13, Issue 5, 1996, Pages 660-665

Asymmetric substitution patterns in the two DNA strands of bacteria

Author keywords

chirochore; DNA evolution model; DNA replication and repair; mutational bias; substitution asymmetry; substitution patterns

Indexed keywords

BACTERIAL DNA;

EID: 0029985398     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025626     Document Type: Article
Times cited : (633)

References (34)
  • 1
    • 0027067071 scopus 로고
    • Genetics and enzymology of DNA replication in Escherichia coli
    • BAKER, T. A., and S. H. WICKNER, 1992. Genetics and enzymology of DNA replication in Escherichia coli. Annu. Rev. Genet. 26:447-477.
    • (1992) Annu. Rev. Genet. , vol.26 , pp. 447-477
    • Baker, T.A.1    Wickner, S.H.2
  • 2
    • 0024805395 scopus 로고
    • The isochore organization of the human genome
    • BERNARDI, G. 1989. The isochore organization of the human genome. Annu. Rev. Genet. 23:637-661.
    • (1989) Annu. Rev. Genet. , vol.23 , pp. 637-661
    • Bernardi, G.1
  • 3
    • 0027519504 scopus 로고
    • Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes
    • BLATTNER, F. R., V. BURLAND, G. PLUNKETT, H. J. SOFIA, and D. L. DANIELS. 1993. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Nucl. Acids. Res. 21:5408-5417.
    • (1993) Nucl. Acids. Res. , vol.21 , pp. 5408-5417
    • Blattner, F.R.1    Burland, V.2    Plunkett, G.3    Sofia, H.J.4    Daniels, D.L.5
  • 4
    • 0029098986 scopus 로고
    • Genetic and transcriptional organization of the beta subunit of Bacillus subtilis RNA polymerase
    • BOOR, K. J., M. L. DUNCAN, and C. W. PRICE. 1995. Genetic and transcriptional organization of the beta subunit of Bacillus subtilis RNA polymerase. J. Biol. Chem. 270:20329-20336.
    • (1995) J. Biol. Chem. , vol.270 , pp. 20329-20336
    • Boor, K.J.1    Duncan, M.L.2    Price, C.W.3
  • 5
    • 0025748810 scopus 로고
    • Strand symmetry of mutation rates in the β-globin region
    • BULMER, M. 1991. Strand symmetry of mutation rates in the β-globin region. J. Mol. Evol. 33:305-310.
    • (1991) J. Mol. Evol. , vol.33 , pp. 305-310
    • Bulmer, M.1
  • 6
    • 0027210404 scopus 로고
    • DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication
    • BURLAND, V., G. PLUNKETT, D. L. DANIELS, and E R. BLATTNER. 1993. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Genomics 16:551-561.
    • (1993) Genomics , vol.16 , pp. 551-561
    • Burland, V.1    Plunkett, G.2    Daniels, D.L.3    Blattner, E.R.4
  • 7
    • 0026754531 scopus 로고
    • Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes
    • DANIELS, D. L., G. PLUNKETT, V. BURLAND, and F. R. BLATTNER. 1992. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Science 257:771-778.
    • (1992) Science , vol.257 , pp. 771-778
    • Daniels, D.L.1    Plunkett, G.2    Burland, V.3    Blattner, F.R.4
  • 8
    • 0029051398 scopus 로고
    • Correlation of GC content with replication timing and repair mechanisms in weakly expressed E. coli genes
    • DESCHAVANNE, P., and J. FILIPSKI. 1995. Correlation of GC content with replication timing and repair mechanisms in weakly expressed E. coli genes. Nucl. Acids. Res. 23:1350-1353.
    • (1995) Nucl. Acids. Res. , vol.23 , pp. 1350-1353
    • Deschavanne, P.1    Filipski, J.2
  • 9
    • 0002479366 scopus 로고
    • Evolution of DNA sequence, contributions of mutational bias and selection to the origin of chromosomal compartments
    • G. OLE, ed. Springer-Verlag, Berlin
    • FILIPSKI, J. 1990. Evolution of DNA sequence, contributions of mutational bias and selection to the origin of chromosomal compartments. Pp. 1-54 in G. OLE, ed. Advances in mutagenesis research 2. Springer-Verlag, Berlin.
    • (1990) Advances in Mutagenesis Research 2 , pp. 1-54
    • Filipski, J.1
  • 10
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzas Rd
    • FLEISCHMANN, R. D., M. D. ADAMS, O. WHITE et al. (40 coauthors). 1995. Whole-genome random sequencing and assembly of Haemophilus influenzas Rd. Science 269:496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3
  • 11
    • 0025898481 scopus 로고
    • Heterogeneity of DNA repair at the gene level
    • HANAWALT, P. C. 1991. Heterogeneity of DNA repair at the gene level. Mutat. Res. 247:203-211.
    • (1991) Mutat. Res. , vol.247 , pp. 203-211
    • Hanawalt, P.C.1
  • 12
    • 0016359052 scopus 로고
    • Correspondence analysis: A neglected multivariate method
    • HILL, M. O. 1974. Correspondence analysis: a neglected multivariate method. Appl. Statis. 23:340-354.
    • (1974) Appl. Statis. , vol.23 , pp. 340-354
    • Hill, M.O.1
  • 13
    • 0027440950 scopus 로고
    • Isolation and characterization of the secE homologue gene of Bacillus subtilis
    • JEONG, S. M., H. YOSHIKAWA, and H. TAKAHASHI. 1993. Isolation and characterization of the secE homologue gene of Bacillus subtilis. Mol. Microbiol. 10:133-142.
    • (1993) Mol. Microbiol. , vol.10 , pp. 133-142
    • Jeong, S.M.1    Yoshikawa, H.2    Takahashi, H.3
  • 14
    • 0029000323 scopus 로고
    • Evidence from analyses of intergenic regions for strand-specific directional mutation pressure in metazoan mitochondrial DNA
    • JERMIIN, L. S., D. GRAUR, and R. H. CROZIER. 1995. Evidence from analyses of intergenic regions for strand-specific directional mutation pressure in metazoan mitochondrial DNA. Mol. Biol. Evol 12:558-563.
    • (1995) Mol. Biol. Evol , vol.12 , pp. 558-563
    • Jermiin, L.S.1    Graur, D.2    Crozier, R.H.3
  • 15
    • 0026007193 scopus 로고
    • Sites of preferential induction of cyclubutane pyrimidine dimers in the nontranscribed strand of lacl correspond with sites of UV-induced mutation in Escherichia coli
    • KOEHLER, D. R., S. S. AWADALLAH, and B. W. GLICKMAN. 1991. Sites of preferential induction of cyclubutane pyrimidine dimers in the nontranscribed strand of lacl correspond with sites of UV-induced mutation in Escherichia coli. J. Biol. Chem. 266:11766-11773.
    • (1991) J. Biol. Chem. , vol.266 , pp. 11766-11773
    • Koehler, D.R.1    Awadallah, S.S.2    Glickman, B.W.3
  • 16
    • 0028998597 scopus 로고
    • Collapse and repair of replication forks in Escherichia coli
    • KUZMINOV, A. 1995. Collapse and repair of replication forks in Escherichia coli. Mol. Microbiol. 16:373-384.
    • (1995) Mol. Microbiol. , vol.16 , pp. 373-384
    • Kuzminov, A.1
  • 17
    • 0028956546 scopus 로고
    • Properties of a general model of DNA evolution under no-strand-bias conditions
    • LOBRY, J. R. 1995. Properties of a general model of DNA evolution under no-strand-bias conditions. J. Mol. Evol. 40:326-330.
    • (1995) J. Mol. Evol. , vol.40 , pp. 326-330
    • Lobry, J.R.1
  • 18
    • 0028968727 scopus 로고
    • Preferential repair of the transcribed DNA strand in the dihydrofolate reductase gene throughout the cell cycle in UV-irradiated human cells
    • LOMMEL, L., C. CARSWELL-CRUMPTON, and P. C. HANAWALT. 1995. Preferential repair of the transcribed DNA strand in the dihydrofolate reductase gene throughout the cell cycle in UV-irradiated human cells. Mutat. Res. 336:181-192.
    • (1995) Mutat. Res. , vol.336 , pp. 181-192
    • Lommel, L.1    Carswell-Crumpton, C.2    Hanawalt, P.C.3
  • 19
    • 0026777126 scopus 로고
    • Prokaryotic DNA replication
    • MARIANS, K. J. 1992. Prokaryotic DNA replication. Annu. Rev. Biochem. 61:673-719.
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 673-719
    • Marians, K.J.1
  • 20
    • 0024426244 scopus 로고
    • Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand
    • MELLON, I., and P. C. HANAWALT. 1989. Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature 342:95-98.
    • (1989) Nature , vol.342 , pp. 95-98
    • Mellon, I.1    Hanawalt, P.C.2
  • 21
    • 0020657475 scopus 로고
    • Prokaryotic DNA replication systems
    • NOSSAL, N. G. 1983. Prokaryotic DNA replication systems. Annu. Rev. Biochem. 52:581-615.
    • (1983) Annu. Rev. Biochem. , vol.52 , pp. 581-615
    • Nossal, N.G.1
  • 22
    • 0028700721 scopus 로고
    • Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin
    • OGASAWARA, N., S. NAKAI, and H. YOSHIKAWA. 1994. Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. DNA Res. 1:1-14.
    • (1994) DNA Res. , vol.1 , pp. 1-14
    • Ogasawara, N.1    Nakai, S.2    Yoshikawa, H.3
  • 23
    • 0018895114 scopus 로고
    • Discontinuous DNA replication
    • OGAWA, T., and T. OKAZAKI. 1980. Discontinuous DNA replication. Annu. Rev. Biochem. 49:421-457.
    • (1980) Annu. Rev. Biochem. , vol.49 , pp. 421-457
    • Ogawa, T.1    Okazaki, T.2
  • 25
    • 0030003657 scopus 로고    scopus 로고
    • NRSub: A non-redundant data base for Bacillus subtilis
    • PERRIERE, G., I. MOSZER, and T. GOJOBORI. 1996. NRSub: a non-redundant data base for Bacillus subtilis. Nucl. Acids Res. 24:41-45.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 41-45
    • Perriere, G.1    Moszer, I.2    Gojobori, T.3
  • 26
    • 0027219606 scopus 로고
    • Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes
    • PLUNKETT, G., V. BURLAND, D. L. DANIELS, and F. R. BLATTNER. 1993. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Nucl. Acids Res. 21:3391-3398.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3391-3398
    • Plunkett, G.1    Burland, V.2    Daniels, D.L.3    Blattner, F.R.4
  • 28
    • 0028356059 scopus 로고
    • Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes
    • SOFIA, H. J., V. BURLAND, D. L. DANIELS, G. PLUNKETT, and F. R. BLATTNER. 1994. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Nucl. Acids Res. 22:2576-2586.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 2576-2586
    • Sofia, H.J.1    Burland, V.2    Daniels, D.L.3    Plunkett, G.4    Blattner, F.R.5
  • 29
    • 0028922156 scopus 로고
    • Intrastrand parity rules of DNA base composition and usage biases of synonymous codons
    • SUEOKA, N. 1995. Intrastrand parity rules of DNA base composition and usage biases of synonymous codons. J. Mol. Evol. 40:318-325.
    • (1995) J. Mol. Evol. , vol.40 , pp. 318-325
    • Sueoka, N.1
  • 30
    • 0013997435 scopus 로고
    • Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis
    • SZYBALSKI, W., H. KUBINSKI, and P SHELDRICK. 1966. Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis. Cold. Spring Harbor Symp. Quant. Biol. 31.123-127.
    • (1966) Cold. Spring Harbor Symp. Quant. Biol. , vol.31 , pp. 123-127
    • Szybalski, W.1    Kubinski, H.2    Sheldrick, P.3
  • 31
    • 0024849301 scopus 로고
    • Discontinuous DNA replication in a lig-7 strain of Escherichia coli is not the result of mismatch repair, nucleotide-excision repair, or the base-excision repair of DNA uracil
    • WANG, T.-C. V., and K. C. SMITH. 1989. Discontinuous DNA replication in a lig-7 strain of Escherichia coli is not the result of mismatch repair, nucleotide-excision repair, or the base-excision repair of DNA uracil. Biochem. Biophys. Res. Comm. 165:685-688.
    • (1989) Biochem. Biophys. Res. Comm. , vol.165 , pp. 685-688
    • Wang, T.-C.V.1    Smith, K.C.2
  • 32
    • 0023653121 scopus 로고
    • Inequality in mutation rates of the two strands of DNA
    • Wu, C.-I., and N. MAEDA. 1987. Inequality in mutation rates of the two strands of DNA. Nature 327:169-170.
    • (1987) Nature , vol.327 , pp. 169-170
    • Wu, C.-I.1    Maeda, N.2
  • 33
    • 0025916537 scopus 로고
    • DNA strand asymmetry
    • Wu, C.-I. 1991. DNA strand asymmetry. Nature 352:114-114.
    • (1991) Nature , vol.352 , pp. 114-114
    • Wu, C.-I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.